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For: Tantardini M, Ieva F, Tajoli L, Piccardi C. Comparing methods for comparing networks. Sci Rep 2019;9:17557. [PMID: 31772246 PMCID: PMC6879644 DOI: 10.1038/s41598-019-53708-y] [Citation(s) in RCA: 62] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2019] [Accepted: 10/25/2019] [Indexed: 11/17/2022]  Open
Number Cited by Other Article(s)
1
Dall'Amico L, Barrat A, Cattuto C. An embedding-based distance for temporal graphs. Nat Commun 2024;15:9954. [PMID: 39551774 PMCID: PMC11570630 DOI: 10.1038/s41467-024-54280-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2024] [Accepted: 11/06/2024] [Indexed: 11/19/2024]  Open
2
Wiśniewski J, Więcek K, Ali H, Pyrc K, Kula-Păcurar A, Wagner M, Chen HC. Distinguishable topology of the task-evoked functional genome networks in HIV-1 reservoirs. iScience 2024;27:111222. [PMID: 39559761 PMCID: PMC11570469 DOI: 10.1016/j.isci.2024.111222] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2024] [Revised: 10/07/2024] [Accepted: 10/18/2024] [Indexed: 11/20/2024]  Open
3
Karamveer, Uzun Y. Approaches for Benchmarking Single-Cell Gene Regulatory Network Methods. Bioinform Biol Insights 2024;18:11779322241287120. [PMID: 39502448 PMCID: PMC11536393 DOI: 10.1177/11779322241287120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2024] [Accepted: 09/10/2024] [Indexed: 11/08/2024]  Open
4
Kebaya LMN, Tang L, Altamimi T, Kowalczyk A, Musabi M, Roychaudhuri S, Vahidi H, Meyerink P, de Ribaupierre S, Bhattacharya S, de Moraes LTAR, Lawrence KS, Duerden EG. Altered functional connectivity in preterm neonates with intraventricular hemorrhage assessed using functional near-infrared spectroscopy. Sci Rep 2024;14:22300. [PMID: 39333278 PMCID: PMC11437059 DOI: 10.1038/s41598-024-72515-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2024] [Accepted: 09/09/2024] [Indexed: 09/29/2024]  Open
5
Macocco I, Mira A, Laio A. Intrinsic dimension as a multi-scale summary statistics in network modeling. Sci Rep 2024;14:17756. [PMID: 39085320 PMCID: PMC11291743 DOI: 10.1038/s41598-024-68113-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2024] [Accepted: 07/19/2024] [Indexed: 08/02/2024]  Open
6
Feng R, Xu T, Xie X, Zhang ZK, Liu C, Zhan XX. A hyper-distance-based method for hypernetwork comparison. CHAOS (WOODBURY, N.Y.) 2024;34:083120. [PMID: 39146451 DOI: 10.1063/5.0221267] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2024] [Accepted: 07/23/2024] [Indexed: 08/17/2024]
7
Li R, Xu S, Li Y, Tang Z, Feng D, Cai J, Ma S. Incorporating prior information in gene expression network-based cancer heterogeneity analysis. Biostatistics 2024:kxae028. [PMID: 39074174 DOI: 10.1093/biostatistics/kxae028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2024] [Revised: 07/04/2024] [Accepted: 07/08/2024] [Indexed: 07/31/2024]  Open
8
Ramanan V, Sarkar IN. Augmenting bacterial similarity measures using a graph-based genome representation. mSystems 2024;9:e0049724. [PMID: 38940518 PMCID: PMC11265277 DOI: 10.1128/msystems.00497-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2024] [Accepted: 06/05/2024] [Indexed: 06/29/2024]  Open
9
Stark P, Hasenbein L, Kasneci E, Göllner R. Gaze-based attention network analysis in a virtual reality classroom. MethodsX 2024;12:102662. [PMID: 38577409 PMCID: PMC10993185 DOI: 10.1016/j.mex.2024.102662] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2023] [Accepted: 03/11/2024] [Indexed: 04/06/2024]  Open
10
Krasnov BR, Barki G, Khokhlova IS. Dissimilarity in flea and host assemblages and their interaction networks along a spatial distance gradient: different patterns revealed by different network dissimilarity metrics. Oecologia 2024;205:397-409. [PMID: 38842685 DOI: 10.1007/s00442-024-05578-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2024] [Accepted: 05/29/2024] [Indexed: 06/07/2024]
11
Luppi AI, Olbrich E, Finn C, Suárez LE, Rosas FE, Mediano PA, Jost J. Quantifying synergy and redundancy between networks. CELL REPORTS. PHYSICAL SCIENCE 2024;5:101892. [PMID: 38720789 PMCID: PMC11077508 DOI: 10.1016/j.xcrp.2024.101892] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Revised: 01/18/2024] [Accepted: 03/01/2024] [Indexed: 05/12/2024]
12
Tang L, Kebaya LMN, Altamimi T, Kowalczyk A, Musabi M, Roychaudhuri S, Vahidi H, Meyerink P, de Ribaupierre S, Bhattacharya S, de Moraes LTAR, St Lawrence K, Duerden EG. Altered resting-state functional connectivity in newborns with hypoxic ischemic encephalopathy assessed using high-density functional near-infrared spectroscopy. Sci Rep 2024;14:3176. [PMID: 38326455 PMCID: PMC10850364 DOI: 10.1038/s41598-024-53256-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2023] [Accepted: 01/30/2024] [Indexed: 02/09/2024]  Open
13
Xie C, Ke Q, Chen H, Liu C, Zhan XX. Directed Network Comparison Using Motifs. ENTROPY (BASEL, SWITZERLAND) 2024;26:128. [PMID: 38392383 PMCID: PMC10887553 DOI: 10.3390/e26020128] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2024] [Revised: 01/28/2024] [Accepted: 01/28/2024] [Indexed: 02/24/2024]
14
Lecca P, Lecca M. Graph embedding and geometric deep learning relevance to network biology and structural chemistry. Front Artif Intell 2023;6:1256352. [PMID: 38035201 PMCID: PMC10687447 DOI: 10.3389/frai.2023.1256352] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2023] [Accepted: 10/16/2023] [Indexed: 12/02/2023]  Open
15
Davies BM, Banerjee A, Mowforth OD, Kotter MRN, Newcombe VFJ. Is the type and/or co-existence of degenerative spinal pathology associated with the occurrence of degenerative cervical myelopathy? A single centre retrospective analysis of individuals with MRI defined cervical cord compression. J Clin Neurosci 2023;117:84-90. [PMID: 37783068 DOI: 10.1016/j.jocn.2023.09.015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2023] [Revised: 09/13/2023] [Accepted: 09/17/2023] [Indexed: 10/04/2023]
16
Shaukat MA, Nguyen TT, Hsu EB, Yang S, Bhatti A. Comparative study of encoded and alignment-based methods for virus taxonomy classification. Sci Rep 2023;13:18662. [PMID: 37907535 PMCID: PMC10618506 DOI: 10.1038/s41598-023-45461-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2023] [Accepted: 10/19/2023] [Indexed: 11/02/2023]  Open
17
Piccardi C. Metrics for network comparison using egonet feature distributions. Sci Rep 2023;13:14657. [PMID: 37669967 PMCID: PMC10480166 DOI: 10.1038/s41598-023-40938-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2023] [Accepted: 08/18/2023] [Indexed: 09/07/2023]  Open
18
Zhao B, Huepenbecker S, Zhu G, Rajan SS, Fujimoto K, Luo X. Comorbidity network analysis using graphical models for electronic health records. Front Big Data 2023;6:846202. [PMID: 37663273 PMCID: PMC10470017 DOI: 10.3389/fdata.2023.846202] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2021] [Accepted: 07/25/2023] [Indexed: 09/05/2023]  Open
19
Robben M, Nasr MS, Das A, Veerla JP, Huber M, Jaworski J, Weidanz J, Luber J. Comparison of the Strengths and Weaknesses of Machine Learning Algorithms and Feature Selection on KEGG Database Microbial Gene Pathway Annotation and Its Effects on Reconstructed Network Topology. J Comput Biol 2023;30:766-782. [PMID: 37437088 DOI: 10.1089/cmb.2022.0370] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/14/2023]  Open
20
Bröhl T, Lehnertz K. A perturbation-based approach to identifying potentially superfluous network constituents. CHAOS (WOODBURY, N.Y.) 2023;33:2894464. [PMID: 37276550 DOI: 10.1063/5.0152030] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2023] [Accepted: 05/16/2023] [Indexed: 06/07/2023]
21
Lewis M, Santini T, Theis N, Muldoon B, Dash K, Rubin J, Keshavan M, Prasad K. Modular architecture and resilience of structural covariance networks in first-episode antipsychotic-naive psychoses. Sci Rep 2023;13:7751. [PMID: 37173346 PMCID: PMC10181992 DOI: 10.1038/s41598-023-34210-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2022] [Accepted: 04/26/2023] [Indexed: 05/15/2023]  Open
22
Shvydun S. Models of similarity in complex networks. PeerJ Comput Sci 2023;9:e1371. [PMID: 37346584 PMCID: PMC10280390 DOI: 10.7717/peerj-cs.1371] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Accepted: 04/06/2023] [Indexed: 06/23/2023]
23
Brimacombe C, Bodner K, Michalska-Smith M, Poisot T, Fortin MJ. Shortcomings of reusing species interaction networks created by different sets of researchers. PLoS Biol 2023;21:e3002068. [PMID: 37011096 PMCID: PMC10101633 DOI: 10.1371/journal.pbio.3002068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2022] [Revised: 04/13/2023] [Accepted: 03/07/2023] [Indexed: 04/05/2023]  Open
24
Wang Z, Natekar P, Tea C, Tamir S, Hakozaki H, Schöneberg J. MitoTNT: Mitochondrial Temporal Network Tracking for 4D live-cell fluorescence microscopy data. PLoS Comput Biol 2023;19:e1011060. [PMID: 37083820 PMCID: PMC10184899 DOI: 10.1371/journal.pcbi.1011060] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2022] [Revised: 05/15/2023] [Accepted: 03/29/2023] [Indexed: 04/22/2023]  Open
25
Pedigo BD, Powell M, Bridgeford EW, Winding M, Priebe CE, Vogelstein JT. Generative network modeling reveals quantitative definitions of bilateral symmetry exhibited by a whole insect brain connectome. eLife 2023;12:e83739. [PMID: 36976249 PMCID: PMC10115445 DOI: 10.7554/elife.83739] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2022] [Accepted: 03/27/2023] [Indexed: 03/29/2023]  Open
26
Duroux D, Van Steen K. netANOVA: novel graph clustering technique with significance assessment via hierarchical ANOVA. Brief Bioinform 2023;24:bbad029. [PMID: 36738256 PMCID: PMC10025436 DOI: 10.1093/bib/bbad029] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2022] [Revised: 01/02/2023] [Accepted: 01/12/2023] [Indexed: 02/05/2023]  Open
27
Roux J, Bez N, Rochet P, Joo R, Mahévas S. Graphlet correlation distance to compare small graphs. PLoS One 2023;18:e0281646. [PMID: 36791120 PMCID: PMC9931116 DOI: 10.1371/journal.pone.0281646] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2022] [Accepted: 01/28/2023] [Indexed: 02/16/2023]  Open
28
Faskowitz J, Puxeddu MG, van den Heuvel MP, Mišić B, Yovel Y, Assaf Y, Betzel RF, Sporns O. Connectome topology of mammalian brains and its relationship to taxonomy and phylogeny. Front Neurosci 2023;16:1044372. [PMID: 36711139 PMCID: PMC9874302 DOI: 10.3389/fnins.2022.1044372] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2022] [Accepted: 12/12/2022] [Indexed: 01/12/2023]  Open
29
Mauro G, Luca M, Longa A, Lepri B, Pappalardo L. Generating mobility networks with generative adversarial networks. EPJ DATA SCIENCE 2022;11:58. [PMID: 36530793 PMCID: PMC9734834 DOI: 10.1140/epjds/s13688-022-00372-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/22/2022] [Accepted: 11/16/2022] [Indexed: 06/17/2023]
30
Li Q, Steeg GV, Yu S, Malo J. Functional Connectome of the Human Brain with Total Correlation. ENTROPY (BASEL, SWITZERLAND) 2022;24:1725. [PMID: 36554129 PMCID: PMC9777567 DOI: 10.3390/e24121725] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/12/2022] [Revised: 11/14/2022] [Accepted: 11/21/2022] [Indexed: 06/17/2023]
31
Ensembles of realistic power distribution networks. Proc Natl Acad Sci U S A 2022;119:e2205772119. [PMID: 36215503 PMCID: PMC9586305 DOI: 10.1073/pnas.2205772119] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
32
Dynamics of short-finned pilot whales long-term social structure in Madeira. Mamm Biol 2022. [DOI: 10.1007/s42991-022-00280-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
33
Fujiwara T, Zhao J, Chen F, Yu Y, Ma KL. Network Comparison with Interpretable Contrastive Network Representation Learning. JOURNAL OF DATA SCIENCE, STATISTICS, AND VISUALISATION 2022;2:10.52933/jdssv.v2i5.56. [PMID: 38318468 PMCID: PMC10840760 DOI: 10.52933/jdssv.v2i5.56] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/07/2024]
34
Wineland SM, Neeson TM. Maximizing the spread of conservation initiatives in social networks. CONSERVATION SCIENCE AND PRACTICE 2022. [DOI: 10.1111/csp2.12740] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]  Open
35
Traquete F, Luz J, Cordeiro C, Sousa Silva M, Ferreira AEN. Graph Properties of Mass-Difference Networks for Profiling and Discrimination in Untargeted Metabolomics. Front Mol Biosci 2022;9:917911. [PMID: 35936789 PMCID: PMC9353772 DOI: 10.3389/fmolb.2022.917911] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2022] [Accepted: 06/03/2022] [Indexed: 11/16/2022]  Open
36
Wang G, Yao W, Zhang X, Li Z. A Mean-Field Game Control for Large-Scale Swarm Formation Flight in Dense Environments. SENSORS (BASEL, SWITZERLAND) 2022;22:5437. [PMID: 35891117 PMCID: PMC9320791 DOI: 10.3390/s22145437] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/19/2022] [Revised: 07/10/2022] [Accepted: 07/18/2022] [Indexed: 06/15/2023]
37
Deshpande AS, Fahrenfeld NL. Abundance, diversity, and host assignment of total, intracellular, and extracellular antibiotic resistance genes in riverbed sediments. WATER RESEARCH 2022;217:118363. [PMID: 35390554 DOI: 10.1016/j.watres.2022.118363] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2022] [Revised: 03/23/2022] [Accepted: 03/24/2022] [Indexed: 06/14/2023]
38
Speyer LG, Hall HA, Ushakova A, Luciano M, Auyeung B, Murray AL. Within-person Relations between Domains of Socio-emotional Development during Childhood and Adolescence. Res Child Adolesc Psychopathol 2022;50:1261-1274. [PMID: 35670883 DOI: 10.1007/s10802-022-00933-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/08/2022] [Indexed: 02/04/2023]
39
Huang CH, Zaenudin E, Tsai JJ, Kurubanjerdjit N, Ng KL. Network subgraph-based approach for analyzing and comparing molecular networks. PeerJ 2022;10:e13137. [PMID: 35529499 PMCID: PMC9074881 DOI: 10.7717/peerj.13137] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2021] [Accepted: 02/28/2022] [Indexed: 01/12/2023]  Open
40
Xavier JB, Monk JM, Poudel S, Norsigian CJ, Sastry AV, Liao C, Bento J, Suchard MA, Arrieta-Ortiz ML, Peterson EJ, Baliga NS, Stoeger T, Ruffin F, Richardson RA, Gao CA, Horvath TD, Haag AM, Wu Q, Savidge T, Yeaman MR. Mathematical models to study the biology of pathogens and the infectious diseases they cause. iScience 2022;25:104079. [PMID: 35359802 PMCID: PMC8961237 DOI: 10.1016/j.isci.2022.104079] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]  Open
41
Bellantuono L, Monaco A, Amoroso N, Aquaro V, Lombardi A, Tangaro S, Bellotti R. Sustainable development goals: conceptualization, communication and achievement synergies in a complex network framework. APPLIED NETWORK SCIENCE 2022;7:14. [PMID: 35308061 PMCID: PMC8919151 DOI: 10.1007/s41109-022-00455-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2021] [Accepted: 03/01/2022] [Indexed: 06/02/2023]
42
Comparative Agent-Based Simulations on Levels of Multiplicity Using a Network Regression: A Mobile Dating Use-Case. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12041982] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
43
Breda FL, Manchado-Gobatto FB, de Barros Sousa FA, Beck WR, Pinto A, Papoti M, Scariot PPM, Gobatto CA. Complex networks analysis reinforces centrality hematological role on aerobic-anaerobic performances of the Brazilian Paralympic endurance team after altitude training. Sci Rep 2022;12:1148. [PMID: 35064131 PMCID: PMC8782909 DOI: 10.1038/s41598-022-04823-w] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Accepted: 12/15/2021] [Indexed: 01/10/2023]  Open
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The COVID-19 Infection Diffusion in the US and Japan: A Graph-Theoretical Approach. BIOLOGY 2022;11:biology11010125. [PMID: 35053123 PMCID: PMC8773348 DOI: 10.3390/biology11010125] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/17/2021] [Revised: 01/05/2022] [Accepted: 01/08/2022] [Indexed: 12/31/2022]
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Schefzik R, Boland L, Hahn B, Kirschning T, Lindner HA, Thiel M, Schneider-Lindner V. Differential Network Testing Reveals Diverging Dynamics of Organ System Interactions for Survivors and Non-survivors in Intensive Care Medicine. Front Physiol 2022;12:801622. [PMID: 35082693 PMCID: PMC8784681 DOI: 10.3389/fphys.2021.801622] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2021] [Accepted: 12/08/2021] [Indexed: 01/08/2023]  Open
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Kotlyar M, Wong SWH, Pastrello C, Jurisica I. Improving Analysis and Annotation of Microarray Data with Protein Interactions. Methods Mol Biol 2022;2401:51-68. [PMID: 34902122 DOI: 10.1007/978-1-0716-1839-4_5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
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Bodner K, Brimacombe C, Fortin M, Molnár PK. Why body size matters: how larger fish ontogeny shapes ecological network topology. OIKOS 2021. [DOI: 10.1111/oik.08569] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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Aminpour P, Schwermer H, Gray S. Do social identity and cognitive diversity correlate in environmental stakeholders? A novel approach to measuring cognitive distance within and between groups. PLoS One 2021;16:e0244907. [PMID: 34735453 PMCID: PMC8568201 DOI: 10.1371/journal.pone.0244907] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2020] [Accepted: 10/19/2021] [Indexed: 11/19/2022]  Open
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Arlidge WNS, Firth JA, Alfaro-Shigueto J, Ibanez-Erquiaga B, Mangel JC, Squires D, Milner-Gulland EJ. Assessing information-sharing networks within small-scale fisheries and the implications for conservation interventions. ROYAL SOCIETY OPEN SCIENCE 2021;8:211240. [PMID: 34853699 PMCID: PMC8611325 DOI: 10.1098/rsos.211240] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/29/2021] [Accepted: 10/26/2021] [Indexed: 06/13/2023]
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Steen OD, van Borkulo CD, van Loo HM. Symptom networks in major depression do not diverge across sex, familial risk, and environmental risk. J Affect Disord 2021;294:227-234. [PMID: 34303301 DOI: 10.1016/j.jad.2021.07.002] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/23/2021] [Revised: 06/30/2021] [Accepted: 07/02/2021] [Indexed: 01/14/2023]
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