Effect of the nitrification inhibitor 3,4-dimethylpyrazole phosphate (DMPP) on N-turnover, the N2O reductase-gene nosZ and N2O:N2 partitioning from agricultural soils

New trends in sugarcane fertilization: Implications for NH3 volatilization, N2O emissions and crop yields

Recycling nutrients helps to reduce the environmental impact of agriculture and contributes to alleviating the effects of global climate change. A recent trend in sugarcane cultivation is the application of concentrated vinasse (CV) combined with fertilizers into an organo-mineral formulation to improve logistics, reduce costs and foster the circular economy. However, the implications of the application of such organo-mineral formulation in sugarcane fields are unclear. In this study, we evaluated the effects of the organo-mineral formulation containing granular urea (UR), and a nitrification inhibitor (NI) on crop yields, NH3 volatilization, and N2O emissions. Field experiments were conducted during two fertilization seasons, dry and wet, and the treatments were: control; UR; UR + NI; CV; CV + UR; and CV + UR + NI. CV was applied at 7 m3 ha-1. The treatments (except control and CV) were balanced to receive the same amount of N and K. Compared with UR, the organo-mineral formulation of CV + UR decreased NH3 volatilization losses from 7% to 4% in the dry season and from 3.5% to 0.5% in the wet season. Conversely, compared with UR, N2O emissions increased significantly (p ≤ 0.05) in CV + UR in the wet season from 1% to 2% of applied N. In the dry season, no differences were observed. The addition of NI was effective in mitigating N2O emissions in both seasons. Emission reductions ranged from 43 to 48% in the dry season and from 71 to 84%, in the wet season. Fertilization with UR or the organo-mineral formulation influenced sugarcane yield only in the dry season, with the highest yield in CV + UR. NI did not affect crop yield. In general, emission intensities (kg CO2eq Mg-1 of stalk) were highest in CV + UR. We conclude that the organo-mineral formulation reduced NH3 losses and increased N2O emissions compared with regular solid fertilizer and that NI was effective for mitigating N2O emissions.

Effects of Nitrogen Input on Community Structure of the Denitrifying Bacteria with Nitrous Oxide Reductase Gene (nosZ I): a Long-Term Pond Experiment

Excessive nitrogen (N) input is an important factor influencing aquatic ecosystems and has received increasing public attention in the past decades. It remains unclear how N input affects the denitrifying bacterial communities that play a key role in regulating N cycles in various ecosystems. To test our hypothesis-that the abundance and biodiversity of denitrifying bacterial communities decrease with increasing N-we compared the abundance and composition of denitrifying bacteria having nitrous oxide reductase gene (nosZ I) from sediments (0-20 cm) in five experimental ponds with different nitrogen fertilization treatment (TN10, TN20, TN30, TN40, TN50) using quantitative PCR and pyrosequencing techniques. We found that (1) N addition significantly decreased nosZ I gene abundance, (2) the Invsimpson and Shannon indices (reflecting biodiversity) first increased significantly along with the increasing N loading in TN10-TN40 followed by a decrease in TN50, (3) the beta diversity of the nosZ I denitrifier was clustered into three groups along the TN concentration levels: Cluster I (TN50), Cluster II (TN40), and Cluster III (TN10-TN30), (4) the proportions of Alphaproteobacteria and Betaproteobacteria in the high-N treatment (TN50) were significantly lower than in the lower N treatments (TN10-TN30). (5) The TN concentration was the most important factor driving the alteration of denitrifying bacteria assemblages. Our findings shed new light on the response of denitrification-related bacteria to long-term N loading at pond scale and on the response of denitrifying microorganisms to N pollution.

Investigation of the effect of nitrification inhibition on the performance and effluent quality of aerobic sequential batch reactors

The use of nitrification inhibition as a concentrating step for ammonium (NH₄⁺), for the purpose of increasing the potential for simultaneous recovery of phosphate (PO₄^3-) and NH₄⁺ from effluent streams of an aerobic sequencing batch reactor (SBR) system, has never been investigated in the literature. Therefore, the present study aimed to determine the effect of the inhibition of nitrification on both the reactor performance and effluent quality in a laboratory scale aerobic SBR system. In order to compare the observed results, a separate reactor, where the inhibition was not applied, was operated as a control reactor (CR) under the identical operational conditions used for the inhibitory reactor (IR). Experimental results for the reactor performance showed that effluents with low total suspended solids (< 50 mg/L) and chemical oxygen demand concentrations (> 90% of removal efficiency based on the influent concentration of 500 mg/L) were achieved for both SBRs by obtaining an activated sludge with a sludge volume index < 60 mL/g after the acclimation period. In the same period, the effluent PO₄^3-, NH₄⁺, and nitrate (NO₃^-) concentrations were found to be 17.0 ± 4.0, 1.26 ± 0.84, and 21.5 ± 39 mg/L for the CR and 10.0 ± 4.4, 3.9 ± 2.4, and 9.2 ± 1.5 mg/L for the IR, respectively. During this period, 94% of the removed NH₄⁺ (NH₄⁺_rem.) was converted to NO₃^- in the CR, indicating almost complete nitrification occurred in the reactor. However, only 47% of the NH₄⁺_rem. was converted to NO₃^- in the IR as a result of the inhibition of nitrification, meaning a partial inhibition (53%) occurred due to the inhibition treatment. These results clearly demonstrated that the inhibition of nitrification allowed the effluent NH₄⁺ concentrations to increase by suppressing the formation of NO₃^- ions. Based on the results, it can be concluded that inhibition of nitrification in an aerobic SBR system creates a potential for conserving the effluent NH₄⁺ concentration and increasing consecutive recovery of PO₄^3- together with NH₄⁺ from the effluent discharges.

Mitigation of nitrous oxide emission through fertigation and 'N' inhibitors - A sustainable climatic crop cultivation in tomato

The impact of nitrous oxide (N₂O) released from the fertilized agro-ecosystems are of increasing concern. Governing fertilizer requirements and utilizing nitrification inhibitors (NI) are effective methodologies to increase nitrogen retention and reduce N₂O emissions from soil. Therefore, the effect of potassium thiosulfate (KTS) and neem-coated urea (NCU) on N₂O efflux under irrigated tomato cultivation was assessed. Soil Test Crop Response (STCR) based recommendation of NPK with normal Urea and KTS at 1% of applied N (183:160:125 kg ha^-1) (STCR-U + KTS) recorded the least N₂O emission and high efficiency in suppressing the nitrate reductase activity. STCR-NCU was on par with STCR-U + KTS, reporting a higher reduction of N₂O (21.1, 31.2, and 34.4% during the basal application, 1^st and 2^nd top dressing, respectively) compared to the blanket recommendation of nutrients. Similarly, STCR-U + KTS recorded the highest reduction (26.2, 25.6, and 30.9% during the basal application, 1^st and 2^nd top dressing, respectively) after fertilizer application. Besides, the yield of tomatoes is increased in the STCR-NCU (14.08%) and STCR-U + KTS (12.48%) with good quality fruit along (AA, Lycopene, and TSS contents) with low N₂O emissions. The DeNitrification-DeComposition (DNDC) model further revealed that the simulated data and assessed findings were in good accord, proving the model's reliability and use as a tool for predicting the efficiency of fertilizer application.

Dimethylpyrazole-based nitrification inhibitors have a dual role in N2O emissions mitigation in forage systems under Atlantic climate conditions

Nitrogen fertilization is the most important factor increasing nitrous oxide (N₂O) emissions from agriculture, which is a powerful greenhouse gas. These emissions are mainly produced by the soil microbial processes of nitrification and denitrification, and the application of nitrification inhibitors (NIs) together with an ammonium-based fertilizer has been proved as an efficient way to decrease them. In this work the NIs dimethylpyrazole phosphate (DMPP) and dimethylpyrazole succinic acid (DMPSA) were evaluated in a temperate grassland under environmental changing field conditions in terms of their efficiency reducing N₂O emissions and their effect on the amount of nitrifying and denitrifying bacterial populations responsible of these emissions. The stimulation of nitrifying bacteria induced by the application of ammonium sulphate as fertilizer was efficiently avoided by the application of both DMPP and DMPSA whatever the soil water content. The denitrifying bacteria population capable of reducing N₂O up to N₂ was also enhanced by both NIs provided that sufficiently high soil water conditions and low nitrate content were occurring. Therefore, both NIs showed the capacity to promote the denitrification process up to N₂ as a mechanism to mitigate N₂O emissions. DMPSA proved to be a promising NI, since it showed a more significant effect than DMPP in decreasing N₂O emissions and increasing ryegrass yield.

Management and implications of using nitrification inhibitors to reduce nitrous oxide emissions from urine patches on grazed pasture soils - A review

Livestock urine patches are the main source of nitrous oxide (N₂O) emissions in pastoral system, and nitrification inhibitors (NIs) have been widely investigated as a N₂O mitigation strategy. This study reviews the current understanding of the effect of NIs use on N₂O emissions from urine patches, including the factors that affect their efficacy, as well as the unintended consequences of NIs use. It brings together the fundamental aspects of targeted management of urine patches for reducing N₂O emissions involving inhibitors. The available literature of 196 datasets indicates that dicyandiamide (DCD), 3,4-dimethylpyrazole phosphate (DMPP), and 2-chloro-6-(trichloromethyl) pyridine (nitrapyrin) reduced N₂O emissions from urine patches by 44 ± 2%, 28 ± 38% and 28 ± 5%, (average ± s.e.), respectively. DCD also increased pasture dry matter and nitrogen (N) uptake by 13 ± 2% and 15 ± 3%, (average ± s.e.), respectively. The effect of DMPP and nitrapyrin on pasture dry matter and N uptake, assessed in only one study, was not significant. It also suggests that harmonizing the timing of inhibitor use with urine-N transformation increase the efficacy of NIs. No negative impacts on non-targeted soil and aquatic organisms have been reported with the recommended rate of DCD applied to urine and recommended applications of DMPP and nitrapyrin for treated mineral fertilisers and manures. However, there was evidence of the presence of small amounts of DCD residues in milk products as a result of its use on livestock grazed pasture. DMPP and nitrapyrin can also enter the food chain via grazing livestock. The study concludes that for the use of NIs in livestock grazed systems, research is needed to establish acceptable maximum residue level (MRL) of NIs in soil, plant, and animal products, and develop technologies that optimise physical mixing between NIs and urine patches.

Gross Ammonification and Nitrification Rates in Soil Amended with Natural and NH4-Enriched Chabazite Zeolite and Nitrification Inhibitor DMPP

Using zeolite-rich tuffs for improving soil properties and crop N-use efficiency is becoming popular. However, the mechanistic understanding of their influence on soil N-processes is still poor. This paper aims to shed new light on how natural and NH4+-enriched chabazite zeolites alter short-term N-ammonification and nitrification rates with and without the use of nitrification inhibitor (DMPP). We employed the 15N pool dilution technique to determine short-term gross rates of ammonification and nitrification in a silty-clay soil amended with two typologies of chabazite-rich tuff: (1) at natural state and (2) enriched with NH4+-N from an animal slurry. Archaeal and bacterial amoA, nirS and nosZ genes, N2O-N and CO2-C emissions were also evaluated. The results showed modest short-term effects of chabazite at natural state only on nitrate production rates, which was slightly delayed compared to the unamended soil. On the other hand, the addition of NH4+-enriched chabazite stimulated NH4+-N production, N2O-N emissions, but reduced NO3−-N production and abundance of nirS-nosZ genes. DMPP efficiency in reducing nitrification rates was dependent on N addition but not affected by the two typologies of zeolites tested. The outcomes of this study indicated the good compatibility of both natural and NH4+-enriched chabazite zeolite with DMPP. In particular, the application of NH4+-enriched zeolites with DMPP is recommended to mitigate short-term N losses.

The model structure of the copper-dependent ammonia monooxygenase

Abstract

Ammonia monooxygenase is a copper-dependent membrane-bound enzyme that catalyzes the first step of nitrification in ammonia-oxidizing bacteria to convert ammonia to hydroxylamine, through the reductive insertion of a dioxygen-derived O atom in an N–H bond. This reaction is analogous to that carried out by particulate methane monooxygenase, which catalyzes the conversion of methane to methanol. The enzymatic activity of ammonia monooxygenase must be modulated to reduce the release of nitrogen-based soil nutrients for crop production into the atmosphere or underground waters, a phenomenon known to significantly decrease the efficiency of primary production as well as increase air and water pollution. The structure of ammonia monooxygenase is not available, rendering the rational design of enzyme inhibitors impossible. This study describes a successful attempt to build a structural model of ammonia monooxygenase, and its accessory proteins AmoD and AmoE, from Nitrosomonas europaea, taking advantage of the high sequence similarity with particulate methane monooxygenase and the homologous PmoD protein, for which crystal structures are instead available. The results obtained not only provide the structural details of the proteins ternary and quaternary structures, but also suggest a location for the copper-containing active site for both ammonia and methane monooxygenases, as well as support a proposed structure of a CuA-analogue dinuclear copper site in AmoD and PmoD.

Graphic abstract

Electronic supplementary material

The online version of this article (10.1007/s00775-020-01820-0) contains supplementary material, which is available to authorized users.