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Liu Y, Roccapriore K, Checa M, Valleti SM, Yang JC, Jesse S, Vasudevan RK. AEcroscopy: A Software-Hardware Framework Empowering Microscopy Toward Automated and Autonomous Experimentation. SMALL METHODS 2024; 8:e2301740. [PMID: 38639016 DOI: 10.1002/smtd.202301740] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2023] [Revised: 03/31/2024] [Indexed: 04/20/2024]
Abstract
Microscopy has been pivotal in improving the understanding of structure-function relationships at the nanoscale and is by now ubiquitous in most characterization labs. However, traditional microscopy operations are still limited largely by a human-centric click-and-go paradigm utilizing vendor-provided software, which limits the scope, utility, efficiency, effectiveness, and at times reproducibility of microscopy experiments. Here, a coupled software-hardware platform is developed that consists of a software package termed AEcroscopy (short for Automated Experiments in Microscopy), along with a field-programmable-gate-array device with LabView-built customized acquisition scripts, which overcome these limitations and provide the necessary abstractions toward full automation of microscopy platforms. The platform works across multiple vendor devices on scanning probe microscopes and electron microscopes. It enables customized scan trajectories, processing functions that can be triggered locally or remotely on processing servers, user-defined excitation waveforms, standardization of data models, and completely seamless operation through simple Python commands to enable a plethora of microscopy experiments to be performed in a reproducible, automated manner. This platform can be readily coupled with existing machine-learning libraries and simulations, to provide automated decision-making and active theory-experiment optimization to turn microscopes from characterization tools to instruments capable of autonomous model refinement and physics discovery.
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Affiliation(s)
- Yongtao Liu
- Center for Nanophase Materials Sciences, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Kevin Roccapriore
- Center for Nanophase Materials Sciences, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Marti Checa
- Center for Nanophase Materials Sciences, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Sai Mani Valleti
- Bredesen Center for Interdisciplinary Research, University of Tennessee, Knoxville, TN, 37996, USA
| | - Jan-Chi Yang
- Department of Physics, National Cheng Kung University, Tainan, 70101, Taiwan
| | - Stephen Jesse
- Center for Nanophase Materials Sciences, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Rama K Vasudevan
- Center for Nanophase Materials Sciences, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
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2
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Patel B, Yadav VK, Desai R, Patel S, Amari A, Choudhary N, Osman H, Patel R, Balram D, Lian KY, Sahoo DK, Patel A. Bacteriogenic synthesis of morphologically diverse silver nanoparticles and their assessment for methyl orange dye removal and antimicrobial activity. PeerJ 2024; 12:e17328. [PMID: 38770094 PMCID: PMC11104345 DOI: 10.7717/peerj.17328] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2023] [Accepted: 04/11/2024] [Indexed: 05/22/2024] Open
Abstract
Nanotechnology and nanoparticles have gained massive attention in the scientific community in recent years due to their valuable properties. Among various AgNPs synthesis methods, microbial approaches offer distinct advantages in terms of cost-effectiveness, biocompatibility, and eco-friendliness. In the present research work, investigators have synthesized three different types of silver nanoparticles (AgNPs), namely AgNPs-K, AgNPs-M, and AgNPs-E, by using Klebsiella pneumoniae (MBC34), Micrococcus luteus (MBC23), and Enterobacter aerogenes (MBX6), respectively. The morphological, chemical, and elemental features of the synthesized AgNPs were analyzed by using UV-Vis spectroscopy (UV-Vis), Fourier transform-infrared spectroscopy (FTIR), X-ray diffraction (XRD), field emission scanning electron microscope (FESEM) and energy-dispersive spectroscopy (EDX). UV-Vis absorbance peaks were obtained at 475, 428, and 503 nm for AgNPs-K, AgNPs-M, and AgNPs-E, respectively. The XRD analysis confirmed the crystalline nature of the synthesized AgNPs, having peaks at 26.2°, 32.1°, and 47.2°. At the same time, the FTIR showed bands at 599, 963, 1,693, 2,299, 2,891, and 3,780 cm-1 for all the types of AgNPs indicating the presence of bacterial biomolecules with the developed AgNPs. The size and morphology of the AgNPs varied from 10 nm to several microns and exhibited spherical to porous sheets-like structures. The percentage of Ag varied from 37.8% (wt.%) to 61.6%, i.e., highest in AgNPs-K and lowest in AgNPs-M. Furthermore, the synthesized AgNPs exhibited potential for environmental remediation, with AgNPs-M exhibiting the highest removal efficiency (19.24% at 120 min) for methyl orange dye in simulated wastewater. Further, all three types of AgNPs were evaluated for the removal of methyl orange dye from the simulated wastewater, where the highest dye removal percentage was 19.24% at 120 min by AgNPs-M. Antibacterial potential of the synthesized AgNPs assessment against both Gram-positive (GPB) Bacillus subtilis (MBC23), B. cereus (MBC24), and Gram-negative bacteria Enterococcus faecalis (MBP13) revealed promising results, with AgNPs-M, exhibiting the largest zone of inhibition (12 mm) against GPB B. megaterium. Such investigation exhibits the potential of the bacteria for the synthesis of AgNPs with diverse morphology and potential applications in environmental remediation and antibacterial therapy-based synthesis of AgNPs.
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Affiliation(s)
- Bhakti Patel
- Department of Life Sciences, Hemchandracharya North Gujarat University, Patan, Gujarat, India
| | - Virendra Kumar Yadav
- Department of Life Sciences, Hemchandracharya North Gujarat University, Patan, Gujarat, India
| | - Reema Desai
- Department of Life Sciences, Hemchandracharya North Gujarat University, Patan, Gujarat, India
| | - Shreya Patel
- Department of Life Sciences, Hemchandracharya North Gujarat University, Patan, Gujarat, India
| | - Abdelfattah Amari
- Department of Chemical Engineering, College of Engineering, King Khalid University, Abha, Saudi Arabia
| | - Nisha Choudhary
- Department of Life Sciences, Hemchandracharya North Gujarat University, Patan, Gujarat, India
| | - Haitham Osman
- Department of Chemical Engineering, College of Engineering, King Khalid University, Abha, Saudi Arabia
| | - Rajat Patel
- Department of Life Sciences, Hemchandracharya North Gujarat University, Patan, Gujarat, India
| | - Deepak Balram
- Department of Electrical Engineering, National Taipei University of Technology, Taipei, Taiwan
| | - Kuang-Yow Lian
- Department of Electrical Engineering, National Taipei University of Technology, Taipei, Taiwan
| | - Dipak Kumar Sahoo
- Department of Veterinary Clinical Sciences, Iowa State University, Ames, Iowa, United States
| | - Ashish Patel
- Department of Life Sciences, Hemchandracharya North Gujarat University, Patan, Gujarat, India
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3
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Gande VV, Podupu PKR, Berry B, Nere NK, Pushpavanam S, Singh MR. Engineering advancements in microfluidic systems for enhanced mixing at low Reynolds numbers. BIOMICROFLUIDICS 2024; 18:011502. [PMID: 38298373 PMCID: PMC10827338 DOI: 10.1063/5.0178939] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2023] [Accepted: 01/04/2024] [Indexed: 02/02/2024]
Abstract
Mixing within micro- and millichannels is a pivotal element across various applications, ranging from chemical synthesis to biomedical diagnostics and environmental monitoring. The inherent low Reynolds number flow in these channels often results in a parabolic velocity profile, leading to a broad residence time distribution. Achieving efficient mixing at such small scales presents unique challenges and opportunities. This review encompasses various techniques and strategies to evaluate and enhance mixing efficiency in these confined environments. It explores the significance of mixing in micro- and millichannels, highlighting its relevance for enhanced reaction kinetics, homogeneity in mixed fluids, and analytical accuracy. We discuss various mixing methodologies that have been employed to get a narrower residence time distribution. The role of channel geometry, flow conditions, and mixing mechanisms in influencing the mixing performance are also discussed. Various emerging technologies and advancements in microfluidic devices and tools specifically designed to enhance mixing efficiency are highlighted. We emphasize the potential applications of micro- and millichannels in fields of nanoparticle synthesis, which can be utilized for biological applications. Additionally, the prospects of machine learning and artificial intelligence are offered toward incorporating better mixing to achieve precise control over nanoparticle synthesis, ultimately enhancing the potential for applications in these miniature fluidic systems.
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Affiliation(s)
- Vamsi Vikram Gande
- Department of Chemical Engineering, University of Illinois Chicago, Chicago, Illinois 60607, USA
| | - Prem K. R. Podupu
- Department of Chemical Engineering, University of Illinois Chicago, Chicago, Illinois 60607, USA
| | - Bianca Berry
- LaGrange Highlands Middle School, LaGrange Highlands, Illinois 60525, USA
| | | | - S. Pushpavanam
- Department of Chemical Engineering, Indian Institute of Technology Madras, Chennai 600036, India
| | - Meenesh R. Singh
- Department of Chemical Engineering, University of Illinois Chicago, Chicago, Illinois 60607, USA
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Domingues JM, Miranda CS, Homem NC, Felgueiras HP, Antunes JC. Nanoparticle Synthesis and Their Integration into Polymer-Based Fibers for Biomedical Applications. Biomedicines 2023; 11:1862. [PMID: 37509502 PMCID: PMC10377033 DOI: 10.3390/biomedicines11071862] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2023] [Revised: 06/23/2023] [Accepted: 06/26/2023] [Indexed: 07/30/2023] Open
Abstract
The potential of nanoparticles as effective drug delivery systems combined with the versatility of fibers has led to the development of new and improved strategies to help in the diagnosis and treatment of diseases. Nanoparticles have extraordinary characteristics that are helpful in several applications, including wound dressings, microbial balance approaches, tissue regeneration, and cancer treatment. Owing to their large surface area, tailor-ability, and persistent diameter, fibers are also used for wound dressings, tissue engineering, controlled drug delivery, and protective clothing. The combination of nanoparticles with fibers has the power to generate delivery systems that have enhanced performance over the individual architectures. This review aims at illustrating the main possibilities and trends of fibers functionalized with nanoparticles, focusing on inorganic and organic nanoparticles and polymer-based fibers. Emphasis on the recent progress in the fabrication procedures of several types of nanoparticles and in the description of the most used polymers to produce fibers has been undertaken, along with the bioactivity of such alliances in several biomedical applications. To finish, future perspectives of nanoparticles incorporated within polymer-based fibers for clinical use are presented and discussed, thus showcasing relevant paths to follow for enhanced success in the field.
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Affiliation(s)
- Joana M Domingues
- Centre for Textile Science and Technology (2C2T), Campus of Azurém, University of Minho, 4800-058 Guimarães, Portugal
| | - Catarina S Miranda
- Centre for Textile Science and Technology (2C2T), Campus of Azurém, University of Minho, 4800-058 Guimarães, Portugal
| | - Natália C Homem
- Simoldes Plastics S.A., Rua Comendador António da Silva Rodrigues 165, 3720-193 Oliveira de Azeméis, Portugal
| | - Helena P Felgueiras
- Centre for Textile Science and Technology (2C2T), Campus of Azurém, University of Minho, 4800-058 Guimarães, Portugal
| | - Joana C Antunes
- Centre for Textile Science and Technology (2C2T), Campus of Azurém, University of Minho, 4800-058 Guimarães, Portugal
- Fibrenamics, Institute of Innovation on Fiber-Based Materials and Composites, Campus of Azurém, University of Minho, 4800-058 Guimarães, Portugal
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5
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Ivanišević I. The Role of Silver Nanoparticles in Electrochemical Sensors for Aquatic Environmental Analysis. SENSORS (BASEL, SWITZERLAND) 2023; 23:3692. [PMID: 37050752 PMCID: PMC10099384 DOI: 10.3390/s23073692] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Revised: 03/30/2023] [Accepted: 03/31/2023] [Indexed: 06/19/2023]
Abstract
With rapidly increasing environmental pollution, there is an urgent need for the development of fast, low-cost, and effective sensing devices for the detection of various organic and inorganic substances. Silver nanoparticles (AgNPs) are well known for their superior optoelectronic and physicochemical properties, and have, therefore, attracted a great deal of interest in the sensor arena. The introduction of AgNPs onto the surface of two-dimensional (2D) structures, incorporation into conductive polymers, or within three-dimensional (3D) nanohybrid architectures is a common strategy to fabricate novel platforms with improved chemical and physical properties for analyte sensing. In the first section of this review, the main wet chemical reduction approaches for the successful synthesis of functional AgNPs for electrochemical sensing applications are discussed. Then, a brief section on the sensing principles of voltammetric and amperometric sensors is given. The current utilization of silver nanoparticles and silver-based composite nanomaterials for the fabrication of voltammetric and amperometric sensors as novel platforms for the detection of environmental pollutants in water matrices is summarized. Finally, the current challenges and future directions for the nanosilver-based electrochemical sensing of environmental pollutants are outlined.
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Affiliation(s)
- Irena Ivanišević
- Department of General and Inorganic Chemistry, Faculty of Chemical Engineering and Technology, University of Zagreb, Marulićev trg 19, 10000 Zagreb, Croatia
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6
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Silver-Based Surface Plasmon Sensors: Fabrication and Applications. Int J Mol Sci 2023; 24:ijms24044142. [PMID: 36835553 PMCID: PMC9963732 DOI: 10.3390/ijms24044142] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2022] [Revised: 02/13/2023] [Accepted: 02/15/2023] [Indexed: 02/22/2023] Open
Abstract
A series of novel phenomena such as optical nonlinear enhancement effect, transmission enhancement, orientation effect, high sensitivity to refractive index, negative refraction and dynamic regulation of low threshold can be generated by the control of surface plasmon (SP) with metal micro-nano structure and metal/material composite structure. The application of SP in nano-photonics, super-resolution imaging, energy, sensor detection, life science, and other fields shows an important prospect. Silver nanoparticles are one of the commonly used metal materials for SP because of their high sensitivity to refractive index change, convenient synthesis, and high controllable degree of shape and size. In this review, the basic concept, fabrication, and applications of silver-based surface plasmon sensors are summarized.
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Avugadda S, Castelli A, Dhanabalan B, Fernandez T, Silvestri N, Collantes C, Baranov D, Imran M, Manna L, Pellegrino T, Arciniegas MP. Highly Emitting Perovskite Nanocrystals with 2-Year Stability in Water through an Automated Polymer Encapsulation for Bioimaging. ACS NANO 2022; 16:13657-13666. [PMID: 35914190 PMCID: PMC9527756 DOI: 10.1021/acsnano.2c01556] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2022] [Accepted: 07/26/2022] [Indexed: 05/29/2023]
Abstract
Lead-based halide perovskite nanocrystals are highly luminescent materials, but their sensitivity to humid environments and their biotoxicity are still important challenges to solve. Here, we develop a stepwise approach to encapsulate representative CsPbBr3 nanocrystals into water-soluble polymer capsules. We show that our protocol can be extended to nanocrystals coated with different ligands, enabling an outstanding high photoluminescence quantum yield of ∼60% that is preserved over two years in capsules dispersed in water. We demonstrate that this on-bench strategy can be implemented on an automated platform with slight modifications, granting access to a faster and more reproducible fabrication process. Also, we reveal that the capsules can be exploited as photoluminescent probes for cell imaging at a dose as low as 0.3 μgPb/mL that is well below the toxicity threshold for Pb and Cs ions. Our approach contributes to expanding significantly the fields of applications of these luminescent materials including biology and biomedicine.
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Affiliation(s)
- Sahitya
Kumar Avugadda
- Nanomaterials
for Biomedical Applications and Nanochemistry, Istituto
Italiano di Tecnologia, Via Morego 30, 16163 Genova, Italy
| | - Andrea Castelli
- Nanomaterials
for Biomedical Applications and Nanochemistry, Istituto
Italiano di Tecnologia, Via Morego 30, 16163 Genova, Italy
| | - Balaji Dhanabalan
- Nanomaterials
for Biomedical Applications and Nanochemistry, Istituto
Italiano di Tecnologia, Via Morego 30, 16163 Genova, Italy
| | - Tamara Fernandez
- Nanomaterials
for Biomedical Applications and Nanochemistry, Istituto
Italiano di Tecnologia, Via Morego 30, 16163 Genova, Italy
| | - Niccolo Silvestri
- Nanomaterials
for Biomedical Applications and Nanochemistry, Istituto
Italiano di Tecnologia, Via Morego 30, 16163 Genova, Italy
| | - Cynthia Collantes
- Nanomaterials
for Biomedical Applications and Nanochemistry, Istituto
Italiano di Tecnologia, Via Morego 30, 16163 Genova, Italy
- Instituto
Interuniversitario de Investigación de Reconocimiento Molecular
y Desarrollo Tecnológico (IDM), Universitat
Politècnica de València-Universitat de València, Camino de Vera s/n, E46022 València, Spain
| | - Dmitry Baranov
- Nanomaterials
for Biomedical Applications and Nanochemistry, Istituto
Italiano di Tecnologia, Via Morego 30, 16163 Genova, Italy
| | - Muhammad Imran
- Nanomaterials
for Biomedical Applications and Nanochemistry, Istituto
Italiano di Tecnologia, Via Morego 30, 16163 Genova, Italy
| | - Liberato Manna
- Nanomaterials
for Biomedical Applications and Nanochemistry, Istituto
Italiano di Tecnologia, Via Morego 30, 16163 Genova, Italy
| | - Teresa Pellegrino
- Nanomaterials
for Biomedical Applications and Nanochemistry, Istituto
Italiano di Tecnologia, Via Morego 30, 16163 Genova, Italy
| | - Milena P. Arciniegas
- Nanomaterials
for Biomedical Applications and Nanochemistry, Istituto
Italiano di Tecnologia, Via Morego 30, 16163 Genova, Italy
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