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Kesler KW, Abuelo A. Mitochondrial function of dairy calf lymphocytes from birth to immunologic maturity. J Dairy Sci 2024:S0022-0302(24)00870-1. [PMID: 38825145 DOI: 10.3168/jds.2024-24849] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2024] [Accepted: 04/23/2024] [Indexed: 06/04/2024]
Abstract
The inability of dairy calves to fully respond to immune stimuli until they reach maturity at 6 mo of age severely limits the use of parenteral vaccines to protect calves against disease. Immune responses are metabolically demanding, and immune cells rely on mitochondrial metabolites for their functionality. Due to the essential role of mitochondria in driving T-cell responses necessary for vaccine efficacy, we hypothesized that the mitochondrial function of dairy calf lymphocytes changes with age, from birth to immunologic maturity. In this cross-sectional study, groups of dairy calves (n = 4/group) were blood sampled at birth before colostrum intake and at 1, 2, 3, 4, 6, 8, 16, and 24 wk of age. Mid-lactation adult cows (n = 4) were also sampled to reference fully mature immune cell populations. B, CD4+, CD8+, and γδ T lymphocytes were enriched using magnetic-activated cell sorting, and their mitochondrial function was assessed with an extracellular flux analyzer. Non-mitochondrial oxygen consumption, basal respiration, maximal respiration, spare respiratory capacity, proton leak, and the oxygen consumption rate (OCR) to extracellular acidification rate (ECAR) ratio were reported. Results were compared among groups using a Kruskal-Wallis test. The OCR to ECAR ratio is an indicator of the relative proportions of oxidative phosphorylation and aerobic glycolysis which is associated with effector functions in lymphocytes. The ratio was lower in 0 wk than adults in CD4+ T-cells. For CD8+ T-cells, the OCR to ECAR ratio for the 2 wk group was lower than the 3 wk group. A lower OCR to ECAR ratio indicates more reliance on glycolytic metabolism than oxidative phosphorylation. Maximal respiration is an indication of mitochondrial efficiency and is often associated with mitochondrial mass. For γδ T-cells, the 3 wk group had higher maximal respiration than the 16 wk group, whereas for B cells maximal respiration was higher in the 1 wk compared with the 16 wk group. Basal respiration indicates all cell functions that require oxygen and was lower in the 0 wk group than the 1 wk and 3 wk groups for CD4+ T-cells. γδ T-cells exhibited lower basal respiration in the 2 wk group than the 24 wk one. Although we found minimal differences in the mitochondrial outcomes reported from non-stimulated lymphocytes from birth through 6 mo of age and mid-lactation adults who served as mature immune cell populations, these results align with previous reports from weaning aged calf and adult CD4+ T-cells. In conclusion, there was insufficient evidence to suggest that the mitochondria in the lymphocytes of dairy calves from birth through immunologic maturity had functional changes associated with age. In conclusion, the capacity of unstimulated calf mitochondria to perform oxidative phosphorylation is not associated with age.
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Affiliation(s)
- Kathryn W Kesler
- Department of Large Animal Clinical Sciences, College of Veterinary Medicine, Michigan State University, East Lansing, 48824
| | - Angel Abuelo
- Department of Large Animal Clinical Sciences, College of Veterinary Medicine, Michigan State University, East Lansing, 48824.
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Sadler DE, Watts PC, Uusi-Heikkilä S. Directional selection, not the direction of selection, affects telomere length and copy number at ribosomal RNA loci. Sci Rep 2024; 14:12162. [PMID: 38802448 PMCID: PMC11130246 DOI: 10.1038/s41598-024-63030-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2024] [Accepted: 05/23/2024] [Indexed: 05/29/2024] Open
Abstract
Many fisheries exert directional selection on traits such as body size and growth rate. Whether directional selection impacts regions of the genome associated with traits related to growth is unknown. To address this issue, we characterised copy number variation in three regions of the genome associated with cell division, (1) telomeric DNA, (2) loci transcribed as ribosomal RNA (rDNA), and (3) mitochondrial DNA (mtDNA), in three selection lines of zebrafish reared at three temperatures (22 °C, 28 °C, and 34 °C). Selection lines differed in (1) the direction of selection (two lines experienced directional selection for large or small body size) and (2) whether they experienced any directional selection itself. Lines that had experienced directional selection were smaller, had lower growth rate, shorter telomeres, and lower rDNA copy number than the line that experiencing no directional selection. Neither telomere length nor rDNA copy number were affected by temperature. In contrast, mtDNA content increased at elevated temperature but did not differ among selection lines. Though directional selection impacts rDNA and telomere length, direction of such selection did not matter, whereas mtDNA acts as a stress marker for temperature. Future work should examine the consequences of these genomic changes in natural fish stocks.
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Affiliation(s)
- Daniel E Sadler
- Department of Biological and Environmental Science, University of Jyväskylä, 40014, Jyväskylä, Finland.
| | - Phillip C Watts
- Department of Biological and Environmental Science, University of Jyväskylä, 40014, Jyväskylä, Finland
| | - Silva Uusi-Heikkilä
- Department of Biological and Environmental Science, University of Jyväskylä, 40014, Jyväskylä, Finland
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Thoral E, Dargère L, Medina-Suárez I, Clair A, Averty L, Sigaud J, Morales A, Salin K, Teulier L. Non-lethal sampling for assessment of mitochondrial function does not affect metabolic rate and swimming performance. Philos Trans R Soc Lond B Biol Sci 2024; 379:20220483. [PMID: 38186271 PMCID: PMC10772603 DOI: 10.1098/rstb.2022.0483] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2023] [Accepted: 09/26/2023] [Indexed: 01/09/2024] Open
Abstract
A fundamental issue in the metabolic field is whether it is possible to understand underlying mechanisms that characterize individual variation. Whole-animal performance relies on mitochondrial function as it produces energy for cellular processes. However, our lack of longitudinal measures to evaluate how mitochondrial function can change within and among individuals and with environmental context makes it difficult to assess individual variation in mitochondrial traits. The aims of this study were to test the repeatability of muscle mitochondrial metabolism by performing two biopsies of red muscle, and to evaluate the effects of biopsies on whole-animal performance in goldfish Carassius auratus. Our results show that basal mitochondrial respiration and net phosphorylation efficiency are repeatable at 14-day intervals. We also show that swimming performance (optimal cost of transport and critical swimming speed) was repeatable in biopsied fish, whereas the repeatability of individual oxygen consumption (standard and maximal metabolic rates) seemed unstable over time. However, we noted that the means of individual and mitochondrial traits did not change over time in biopsied fish. This study shows that muscle biopsies allow the measurement of mitochondrial metabolism without sacrificing animals and that two muscle biopsies 14 days apart affect the intraspecific variation in fish performance without affecting average performance of individuals. This article is part of the theme issue 'The evolutionary significance of variation in metabolic rates'.
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Affiliation(s)
- Elisa Thoral
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, ENTPE, UMR 5023 LEHNA, F-69622, Villeurbanne, France
- Department of Biology, Section for Evolutionary Ecology, Lund University, Sölvegatan 37, Lund 223 62, Sweden
| | - Lauréliane Dargère
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, ENTPE, UMR 5023 LEHNA, F-69622, Villeurbanne, France
| | - Ione Medina-Suárez
- Instituto de Oceanografía y Cambio Global, IOCAG, Universidad de Las Palmas de Gran Canaria, Unidad Asociada ULPGC-CSIC, Campus de Taliarte, 35214 Telde, Gran Canaria, Canary Islands, Spain
| | - Angéline Clair
- Plateforme Animalerie Conventionnelle et Sauvage Expérimentale de la Doua (ACSED), Fédération de Recherche 3728, Univ Lyon, Université Claude Bernard Lyon 1, CNRS, ENS-Lyon, INRAE, INSA, VetAgroSup 69622, Villeurbanne, France
| | - Laetitia Averty
- Plateforme Animalerie Conventionnelle et Sauvage Expérimentale de la Doua (ACSED), Fédération de Recherche 3728, Univ Lyon, Université Claude Bernard Lyon 1, CNRS, ENS-Lyon, INRAE, INSA, VetAgroSup 69622, Villeurbanne, France
| | - Justine Sigaud
- Plateforme Animalerie Conventionnelle et Sauvage Expérimentale de la Doua (ACSED), Fédération de Recherche 3728, Univ Lyon, Université Claude Bernard Lyon 1, CNRS, ENS-Lyon, INRAE, INSA, VetAgroSup 69622, Villeurbanne, France
| | - Anne Morales
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, ENTPE, UMR 5023 LEHNA, F-69622, Villeurbanne, France
| | - Karine Salin
- Ifremer, CNRS, RD, Laboratory of Environmental Marine Sciences, Université de Brest, 29280 Plouzané, France
| | - Loïc Teulier
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, ENTPE, UMR 5023 LEHNA, F-69622, Villeurbanne, France
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Péron M, Simon V, Le Grand F, Soudant P, Mazurais D, Vagner M. Non-lethal sampling method for the analysis of white muscle fatty acid profiles in European sea bass (Dicentrarchus labrax). FISH PHYSIOLOGY AND BIOCHEMISTRY 2023; 49:1381-1390. [PMID: 37948014 DOI: 10.1007/s10695-023-01262-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2023] [Accepted: 11/01/2023] [Indexed: 11/12/2023]
Abstract
This study presents a novel non-lethal sampling method for assessing fatty acid (FA) composition in juvenile European sea bass (Dicentrarchus labrax) using subcutaneous white muscle biopsies. This research aimed to evaluate the suitability of the biopsy for FA analysis using two lipid extraction protocols and comparing them to a lethal routine method. The results showed that a mass of fresh tissue as low as 1.4 mg provided good quality FA chromatograms for both reserve and membrane lipids. Although the biopsy method displayed high variability in terms of FA quantity among intra-individual replicates, it showed good FA profile repeatability in both reserve and membrane lipids. The study highlights the potential of this non-lethal approach for studying FA dynamics in fish, with its application being particularly promising for ecological and experimental studies. However, careful biopsy implementation is recommended to account for potential lipid droplet and lipid distribution variability within the tissue.
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Affiliation(s)
- Mickaël Péron
- Univ Brest, CNRS, IRD, Ifremer, LEMAR, F-29280, Plouzané, France.
| | - Victor Simon
- Univ Brest, CNRS, IRD, Ifremer, LEMAR, F-29280, Plouzané, France
| | | | - Philippe Soudant
- Univ Brest, CNRS, IRD, Ifremer, LEMAR, F-29280, Plouzané, France
| | - David Mazurais
- Univ Brest, CNRS, IRD, Ifremer, LEMAR, F-29280, Plouzané, France
| | - Marie Vagner
- Univ Brest, CNRS, IRD, Ifremer, LEMAR, F-29280, Plouzané, France
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Metcalfe NB, Bellman J, Bize P, Blier PU, Crespel A, Dawson NJ, Dunn RE, Halsey LG, Hood WR, Hopkins M, Killen SS, McLennan D, Nadler LE, Nati JJH, Noakes MJ, Norin T, Ozanne SE, Peaker M, Pettersen AK, Przybylska-Piech A, Rathery A, Récapet C, Rodríguez E, Salin K, Stier A, Thoral E, Westerterp KR, Westerterp-Plantenga MS, Wojciechowski MS, Monaghan P. Solving the conundrum of intra-specific variation in metabolic rate: A multidisciplinary conceptual and methodological toolkit: New technical developments are opening the door to an understanding of why metabolic rate varies among individual animals of a species: New technical developments are opening the door to an understanding of why metabolic rate varies among individual animals of a species. Bioessays 2023; 45:e2300026. [PMID: 37042115 DOI: 10.1002/bies.202300026] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2023] [Revised: 03/24/2023] [Accepted: 03/27/2023] [Indexed: 04/13/2023]
Abstract
Researchers from diverse disciplines, including organismal and cellular physiology, sports science, human nutrition, evolution and ecology, have sought to understand the causes and consequences of the surprising variation in metabolic rate found among and within individual animals of the same species. Research in this area has been hampered by differences in approach, terminology and methodology, and the context in which measurements are made. Recent advances provide important opportunities to identify and address the key questions in the field. By bringing together researchers from different areas of biology and biomedicine, we describe and evaluate these developments and the insights they could yield, highlighting the need for more standardisation across disciplines. We conclude with a list of important questions that can now be addressed by developing a common conceptual and methodological toolkit for studies on metabolic variation in animals.
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Affiliation(s)
- Neil B Metcalfe
- School of Biodiversity, One Health & Veterinary Medicine, University of Glasgow, Glasgow, UK
| | - Jakob Bellman
- Department of Physiology, Institute of Neuroscience and Physiology, University of Gothenburg, Gothenburg, Sweden
| | - Pierre Bize
- Swiss Ornithological Institute, Sempach, Switzerland
| | - Pierre U Blier
- Département de Biologie, Université de Québec à Rimouski, Rimouski, Canada
| | - Amélie Crespel
- Department of Biology, University of Turku, Turku, Finland
| | - Neal J Dawson
- School of Biodiversity, One Health & Veterinary Medicine, University of Glasgow, Glasgow, UK
| | - Ruth E Dunn
- Lancaster Environment Centre, University of Lancaster, Lancaster, UK
| | - Lewis G Halsey
- School of Life and Health Sciences, University of Roehampton, London, UK
| | - Wendy R Hood
- Department of Biological Sciences, Auburn University, Auburn, USA
| | - Mark Hopkins
- School of Food Science and Nutrition, Leeds University, Leeds, UK
| | - Shaun S Killen
- School of Biodiversity, One Health & Veterinary Medicine, University of Glasgow, Glasgow, UK
| | - Darryl McLennan
- School of Biodiversity, One Health & Veterinary Medicine, University of Glasgow, Glasgow, UK
| | - Lauren E Nadler
- Ocean and Earth Science, NOC, University of Southampton, Southampton, UK
| | - Julie J H Nati
- Ocean Sciences Center, Memorial University of Newfoundland, St John's, Canada
| | - Matthew J Noakes
- School of Animal, Plant, and Environmental Sciences, University of the Witwatersrand, Johannesburg, South Africa
| | - Tommy Norin
- DTU Aqua: National Institute of Aquatic Resources, Technical University of Denmark, Kongens Lyngby, Denmark
| | - Susan E Ozanne
- Wellcome-MRC Institute of Metabolic Science, University of Cambridge, Cambridge, UK
| | | | - Amanda K Pettersen
- School of Biodiversity, One Health & Veterinary Medicine, University of Glasgow, Glasgow, UK
- School of Life & Environmental Sciences, The University of Sydney, Sydney, Australia
| | - Anna Przybylska-Piech
- Department of Vertebrate Zoology & Ecology, Nicolaus Copernicus University, Toruń, Poland
| | - Alann Rathery
- School of Life and Health Sciences, University of Roehampton, London, UK
| | - Charlotte Récapet
- Universite de Pau et des Pays de l'Adour, E2S UPPA, INRAE, ECOBIOP, Saint-Pée-sur-, Nivelle, France
| | - Enrique Rodríguez
- Department of Genetics, Evolution & Environment, University College London, London, UK
| | - Karine Salin
- IFREMER, Univ Brest, CNRS, IRD, Laboratory of Environmental Marine Sciences, Plouzané, France
| | - Antoine Stier
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, ENTPE, UMR 5023 LEHNA, Villeurbanne, France
| | - Elisa Thoral
- Department of Biology, Lund University, Lund, Sweden
| | - Klaas R Westerterp
- Department of Nutrition & Movement Sciences, Maastricht University, Maastricht, The Netherlands
| | | | - Michał S Wojciechowski
- Department of Vertebrate Zoology & Ecology, Nicolaus Copernicus University, Toruń, Poland
| | - Pat Monaghan
- School of Biodiversity, One Health & Veterinary Medicine, University of Glasgow, Glasgow, UK
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Escamez S, Robinson KM, Luomaranta M, Gandla ML, Mähler N, Yassin Z, Grahn T, Scheepers G, Stener LG, Jansson S, Jönsson LJ, Street NR, Tuominen H. Genetic markers and tree properties predicting wood biorefining potential in aspen (Populus tremula) bioenergy feedstock. BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS 2023; 16:65. [PMID: 37038157 PMCID: PMC10088276 DOI: 10.1186/s13068-023-02315-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2023] [Accepted: 03/31/2023] [Indexed: 04/12/2023]
Abstract
BACKGROUND Wood represents the majority of the biomass on land and constitutes a renewable source of biofuels and other bioproducts. However, wood is recalcitrant to bioconversion, raising a need for feedstock improvement in production of, for instance, biofuels. We investigated the properties of wood that affect bioconversion, as well as the underlying genetics, to help identify superior tree feedstocks for biorefining. RESULTS We recorded 65 wood-related and growth traits in a population of 113 natural aspen genotypes from Sweden ( https://doi.org/10.5061/dryad.gtht76hrd ). These traits included three growth and field performance traits, 20 traits for wood chemical composition, 17 traits for wood anatomy and structure, and 25 wood saccharification traits as indicators of bioconversion potential. Glucose release after saccharification with acidic pretreatment correlated positively with tree stem height and diameter and the carbohydrate content of the wood, and negatively with the content of lignin and the hemicellulose sugar units. Most of these traits displayed extensive natural variation within the aspen population and high broad-sense heritability, supporting their potential in genetic improvement of feedstocks towards improved bioconversion. Finally, a genome-wide association study (GWAS) revealed 13 genetic loci for saccharification yield (on a whole-tree-biomass basis), with six of them intersecting with associations for either height or stem diameter of the trees. CONCLUSIONS The simple growth traits of stem height and diameter were identified as good predictors of wood saccharification yield in aspen trees. GWAS elucidated the underlying genetics, revealing putative genetic markers for bioconversion of bioenergy tree feedstocks.
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Affiliation(s)
- Sacha Escamez
- Department of Plant Physiology, Umeå Plant Science Centre (UPSC), Umeå University, 901 87, Umeå, Sweden
| | - Kathryn M Robinson
- Department of Plant Physiology, Umeå Plant Science Centre (UPSC), Umeå University, 901 87, Umeå, Sweden
| | - Mikko Luomaranta
- Department of Plant Physiology, Umeå Plant Science Centre (UPSC), Umeå University, 901 87, Umeå, Sweden
| | | | - Niklas Mähler
- Department of Plant Physiology, Umeå Plant Science Centre (UPSC), Umeå University, 901 87, Umeå, Sweden
| | - Zakiya Yassin
- RISE AB, Drottning Kristinas Väg 61 B, 114 28, Stockholm, Sweden
| | - Thomas Grahn
- RISE AB, Drottning Kristinas Väg 61 B, 114 28, Stockholm, Sweden
| | | | - Lars-Göran Stener
- The Forestry Research Institute of Sweden, Ekebo, 268 90, Svalöv, Sweden
| | - Stefan Jansson
- Department of Plant Physiology, Umeå Plant Science Centre (UPSC), Umeå University, 901 87, Umeå, Sweden
| | - Leif J Jönsson
- Department of Chemistry, Umeå University, 901 87, Umeå, Sweden
| | - Nathaniel R Street
- Department of Plant Physiology, Umeå Plant Science Centre (UPSC), Umeå University, 901 87, Umeå, Sweden
| | - Hannele Tuominen
- Department of Plant Physiology, Umeå Plant Science Centre (UPSC), Umeå University, 901 87, Umeå, Sweden.
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science Centre (UPSC), Swedish University of Agricultural Sciences, 901 83, Umeå, Sweden.
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