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Mattioli EJ, Cipriani B, Zerbetto F, Marforio TD, Calvaresi M. Interaction of Au(III) with amino acids: a vade mecum for medicinal chemistry and nanotechnology. J Mater Chem B 2024; 12:5162-5170. [PMID: 38687242 DOI: 10.1039/d4tb00204k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/02/2024]
Abstract
Au(III) is highly reactive. At odds with its reduced counterpart, Au(I), it is hardly present in structural databases. And yet, it is the starting reactant to form gold nanoclusters (AuNCs) and the constitutive component of a new class of drugs. Its reactivity is a world apart from that of the iso-electronic Pt(II) species. Rather than DNA, it targets proteins. Its interaction with amino acid residues is manifold. It can strongly interact with the residue backbones, amino acid side chains and protein ends, it can form appropriate complexes whose stabilization energy reaches up to more than 40 kcal mol-1, it can affect the pKa of amino acid residues, and it can promote charge transfer from the residues to the amount that it is reduced. Here, quantum chemical calculations provide quantitative information on all the processes where Au(III) can be involved. A myriad of structural arrangements are examined in order to determine the strongest interactions and quantify the amount of charge transfer between protonated and deprotonated residues and Au(III). The calculated interaction energies of the amino acid side chains with Au(III) quantitatively reproduce the experimental tendency of Au(III) to interact with selenocysteine, cysteine and histidine and negatively charged amino acids such as Glu and Asp. Also, aromatic residues such as tyrosine and tryptophan strongly interact with Au(III). In proteins, basic pH plays a role in the deprotonation of cysteine, lysine and tyrosine and strongly increases the binding affinity of Au(III) toward these amino acids. The amino acid residues in the protein can also trigger the reduction of Au(III) ions. Sulfur-containing amino acids (cysteine and methionine) and selenocysteine provide almost one electron to Au(III) upon binding. Tyrosine also shows a considerable tendency to act as a reductant. Other amino acids, commonly identified in Au-protein adducts, such as Ser, Trp, Thr, Gln, Glu, Asn, Asp, Lys, Arg and His, possess a notable reducing power toward Au(III). These results and their discussion form a vade mecum that can find application in medicinal chemistry and nanotech applications of Au(III).
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Affiliation(s)
- Edoardo Jun Mattioli
- Dipartimento di Chimica ''G. Ciamician'', Alma Mater Studiorum - Universita di Bologna, via F. Selmi 2, 40126 Bologna, Italy.
| | - Beatrice Cipriani
- Dipartimento di Chimica ''G. Ciamician'', Alma Mater Studiorum - Universita di Bologna, via F. Selmi 2, 40126 Bologna, Italy.
| | - Francesco Zerbetto
- Dipartimento di Chimica ''G. Ciamician'', Alma Mater Studiorum - Universita di Bologna, via F. Selmi 2, 40126 Bologna, Italy.
| | - Tainah Dorina Marforio
- Dipartimento di Chimica ''G. Ciamician'', Alma Mater Studiorum - Universita di Bologna, via F. Selmi 2, 40126 Bologna, Italy.
| | - Matteo Calvaresi
- Dipartimento di Chimica ''G. Ciamician'', Alma Mater Studiorum - Universita di Bologna, via F. Selmi 2, 40126 Bologna, Italy.
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Tiwari V, Garg S, Karmakar T. Insights into the Interactions of Peptides with Monolayer-Protected Metal Nanoclusters. ACS APPLIED BIO MATERIALS 2024; 7:685-691. [PMID: 36820798 DOI: 10.1021/acsabm.2c00997] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/24/2023]
Abstract
Monolayer-protected atomically precise metal nanoclusters (MPCs) have potential applications in catalysis, imaging, and drug delivery. Understanding their interactions with biomolecules such as peptides is of paramount interest for their use in cell imaging and drug delivery. Here we have carried out atomistic molecular dynamics simulations to investigate the interactions between MPCs and an anticancer peptide, melittin. Melittin gets attached to the MPCs surface by the formation of multiple hydrogen bonds between its amino acid residues with MPCs ligands. Additionally, the positively charged Lys, Arg, and peptide's N-terminal strongly anchor the peptide to the MPC metal surface, providing extra stabilization.
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Affiliation(s)
- Vikas Tiwari
- Department of Chemistry, Indian Institute of Technology, Delhi, Hauz Khas, 110016 New Delhi, India
| | - Sonali Garg
- Department of Chemistry, Indian Institute of Technology, Delhi, Hauz Khas, 110016 New Delhi, India
| | - Tarak Karmakar
- Department of Chemistry, Indian Institute of Technology, Delhi, Hauz Khas, 110016 New Delhi, India
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Balan JL, Morato-Márquez JA, Torres-Torres JG, Cabellos JL, Ortiz-Chi F. Structural and optical properties of the Ag n-tyrosine complexes ( n = 3-12): a density functional theory study. ROYAL SOCIETY OPEN SCIENCE 2023; 10:230908. [PMID: 38094276 PMCID: PMC10716649 DOI: 10.1098/rsos.230908] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/29/2023] [Accepted: 11/21/2023] [Indexed: 01/11/2024]
Abstract
We study the optical properties of Agn (n = 3-12) neutral clusters and their coordination with a tyrosine (Tyr) molecule. A global search strategy coupled with density functional theory (DFT) computations explored the potential energy surface. Adsorption energy calculations predicted that Tyr coordination stabilizes the metal clusters, favouring the Agn-Tyr complexes with an even number of silver atoms. For the Agn low-lying isomers, the general shape and the major transitions of the calculated time dependent-DFT (TD-DFT) absorption spectra align with those of previous reports measured in an argon environment. We use the analysis of non-covalent interactions to identify the specific interactions between each silver cluster and functional groups of Tyr. The TD-DFT absorption spectra for the Agn-Tyr complexes showed that Tyr significantly modifies the optical properties of the coordinated silver clusters and affects the smaller systems to a greater extent. The optical absorption results of the bare Agn clusters and the Agn-Tyr complexes are compared and discussed in detail.
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Affiliation(s)
- José Luis Balan
- División Académica de Ciencias Básicas, Universidad Juárez Autónoma de Tabasco, Cunduacán 86690, Tabasco, México
| | - José Aminadat Morato-Márquez
- División Académica de Ciencias Básicas, Universidad Juárez Autónoma de Tabasco, Cunduacán 86690, Tabasco, México
- Tecnológico Nacional de México, Instituto Tecnológico de Villahermosa, Departamento de Ciencias de la Tierra, Villahermosa, 86010, Tabasco, México
| | - José Gilberto Torres-Torres
- División Académica de Ciencias Básicas, Universidad Juárez Autónoma de Tabasco, Cunduacán 86690, Tabasco, México
| | - José Luis Cabellos
- Universidad Politécnica de Tapachula, Coordinación de Investigación y Desarrollo Tecnológico, Tapachula 30830, Chiapas, México
| | - Filiberto Ortiz-Chi
- CONAHCYT-División Académica de Ciencias Básicas, Universidad Juárez Autónoma de Tabasco, Cunduacán 86690, Tabasco, México
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Mathew MS, Krishnan G, Mathews AA, Sunil K, Mathew L, Antoine R, Thomas S. Recent Progress on Ligand-Protected Metal Nanoclusters in Photocatalysis. NANOMATERIALS (BASEL, SWITZERLAND) 2023; 13:1874. [PMID: 37368304 DOI: 10.3390/nano13121874] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/04/2023] [Revised: 06/07/2023] [Accepted: 06/13/2023] [Indexed: 06/28/2023]
Abstract
The reckless use of non-replenishable fuels by the growing population for energy and the resultant incessant emissions of hazardous gases and waste products into the atmosphere have insisted that scientists fabricate materials capable of managing these global threats at once. In recent studies, photocatalysis has been employed to focus on utilizing renewable solar energy to initiate chemical processes with the aid of semiconductors and highly selective catalysts. A wide range of nanoparticles has showcased promising photocatalytic properties. Metal nanoclusters (MNCs) with sizes below 2 nm, stabilized by ligands, show discrete energy levels and exhibit unique optoelectronic properties, which are vital to photocatalysis. In this review, we intend to compile information on the synthesis, true nature, and stability of the MNCs decorated with ligands and the varying photocatalytic efficiency of metal NCs concerning changes in the aforementioned domains. The review discusses the photocatalytic activity of atomically precise ligand-protected MNCs and their hybrids in the domain of energy conversion processes such as the photodegradation of dyes, the oxygen evolution reaction (ORR), the hydrogen evolution reaction (HER), and the CO2 reduction reaction (CO2RR).
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Affiliation(s)
- Meegle S Mathew
- School of Energy Materials, Mahatma Gandhi University, Kottayam 686560, India
- Research and Post Graduate Department of Chemistry, Mar Athanasius College, Kothamangalam 686666, India
| | - Greeshma Krishnan
- School of Energy Materials, Mahatma Gandhi University, Kottayam 686560, India
| | - Amita Aanne Mathews
- School of Energy Materials, Mahatma Gandhi University, Kottayam 686560, India
| | - Kevin Sunil
- School of Energy Materials, Mahatma Gandhi University, Kottayam 686560, India
| | - Leo Mathew
- School of Energy Materials, Mahatma Gandhi University, Kottayam 686560, India
| | - Rodolphe Antoine
- Institut Lumière Matière UMR 5306, Univ Lyon, Université Claude Bernard Lyon 1, CNRS, F-69100 Villeurbanne, France
| | - Sabu Thomas
- School of Energy Materials, Mahatma Gandhi University, Kottayam 686560, India
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Peng B, Zhou JF, Ding M, Shan BQ, Chen T, Zhang K. Structural water molecules dominated p band intermediate states as a unified model for the origin on the photoluminescence emission of noble metal nanoclusters: from monolayer protected clusters to cage confined nanoclusters. SCIENCE AND TECHNOLOGY OF ADVANCED MATERIALS 2023; 24:2210723. [PMID: 37205011 PMCID: PMC10187113 DOI: 10.1080/14686996.2023.2210723] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/27/2023] [Revised: 04/29/2023] [Accepted: 04/29/2023] [Indexed: 05/21/2023]
Abstract
In the past several decades, noble metal nanoclusters (NMNCs) have been developed as an emerging class of luminescent materials due to their superior photo-stability and biocompatibility, but their luminous quantum yield is relatively low and the physical origin of the bright photoluminescence (PL) of NMNCs remain elusive, which limited their practical application. As the well-defined structure and composition of NMNCs have been determined, in this mini-review, the effect of each component (metal core, ligand shell and interfacial water) on their PL properties and corresponded working mechanism were comprehensively introduced, and a model that structural water molecules dominated p band intermediate state was proposed to give a unified understanding on the PL mechanism of NMNCs and a further perspective to the future developments of NMNCs by revisiting the development of our studies on the PL mechanism of NMNCs in the past decade.
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Affiliation(s)
- Bo Peng
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, College of Chemistry and Molecular Engineering, East China Normal University, Shanghai, China
| | - Jia-Feng Zhou
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, College of Chemistry and Molecular Engineering, East China Normal University, Shanghai, China
| | - Meng Ding
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, College of Chemistry and Molecular Engineering, East China Normal University, Shanghai, China
| | - Bing-Qian Shan
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, College of Chemistry and Molecular Engineering, East China Normal University, Shanghai, China
| | - Tong Chen
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, College of Chemistry and Molecular Engineering, East China Normal University, Shanghai, China
| | - Kun Zhang
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, College of Chemistry and Molecular Engineering, East China Normal University, Shanghai, China
- Laboratoire de chimie, Ecole Normale Supérieure de Lyon, Institut de Chimie de Lyon, Université de Lyon, Lyon, France
- Shandong Provincial Key Laboratory of Chemical Energy Storage and Novel Cell Technology, School of Chemistry and Chemical Engineering, Liaocheng University, Liaocheng, Shandong, PR China
- Institute of Eco-Chongming, Shanghai, China
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Bertorelle F, Wegner KD, Perić Bakulić M, Fakhouri H, Comby-Zerbino C, Sagar A, Bernadó P, Resch-Genger U, Bonačić-Koutecký V, Le Guével X, Antoine R. Tailoring the NIR-II Photoluminescence of Single Thiolated Au 25 Nanoclusters by Selective Binding to Proteins. Chemistry 2022; 28:e202200570. [PMID: 35703399 DOI: 10.1002/chem.202200570] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2022] [Indexed: 12/28/2022]
Abstract
Atomically precise gold nanoclusters are a fascinating class of nanomaterials that exhibit molecule-like properties and have outstanding photoluminescence (PL). Their ultrasmall size, molecular chemistry, and biocompatibility make them extremely appealing for selective biomolecule labeling in investigations of biological mechanisms at the cellular and anatomical levels. In this work, we report a simple route to incorporate a preformed Au25 nanocluster into a model bovine serum albumin (BSA) protein. A new approach combining small-angle X-ray scattering and molecular modeling provides a clear localization of a single Au25 within the protein to a cysteine residue on the gold nanocluster surface. Attaching Au25 to BSA strikingly modifies the PL properties with enhancement and a redshift in the second near-infrared (NIR-II) window. This study paves the way to conrol the design of selective sensitive probes in biomolecules through a ligand-based strategy to enable the optical detection of biomolecules in a cellular environment by live imaging.
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Affiliation(s)
- Franck Bertorelle
- Institut Lumière Matière, UMR5306, Université Claude Bernard Lyon1-CNRS, Université de Lyon, 69622, Villeurbanne Cedex, France.,Nantes Université, CNRS, US2B, UMR 6286, 44000, Nantes, France
| | - K David Wegner
- Federal Institute for Materials Research and Testing (BAM), Richard-Willstaetter-Str. 11, 12489, Berlin, Germany
| | - Martina Perić Bakulić
- Center of Excellence for Science and Technology, Integration of Mediterranean Region (STIM) at, Interdisciplinary Center for Advanced Sciences and Technology (ICAST), University of Split, Poljička cesta 35, 21000, Split, Croatia
| | - Hussein Fakhouri
- Institut Lumière Matière, UMR5306, Université Claude Bernard Lyon1-CNRS, Université de Lyon, 69622, Villeurbanne Cedex, France.,Center of Excellence for Science and Technology, Integration of Mediterranean Region (STIM) at, Interdisciplinary Center for Advanced Sciences and Technology (ICAST), University of Split, Poljička cesta 35, 21000, Split, Croatia
| | - Clothilde Comby-Zerbino
- Institut Lumière Matière, UMR5306, Université Claude Bernard Lyon1-CNRS, Université de Lyon, 69622, Villeurbanne Cedex, France
| | - Amin Sagar
- Centre de Biologie Structurale, Université de Montpellier, INSERM, CNRS, 29 rue de Navacelles, 34090, Montpellier, France
| | - Pau Bernadó
- Centre de Biologie Structurale, Université de Montpellier, INSERM, CNRS, 29 rue de Navacelles, 34090, Montpellier, France
| | - Ute Resch-Genger
- Federal Institute for Materials Research and Testing (BAM), Richard-Willstaetter-Str. 11, 12489, Berlin, Germany
| | - Vlasta Bonačić-Koutecký
- Center of Excellence for Science and Technology, Integration of Mediterranean Region (STIM) at, Interdisciplinary Center for Advanced Sciences and Technology (ICAST), University of Split, Poljička cesta 35, 21000, Split, Croatia.,Chemistry Department, Humboldt University of Berlin, Brook-Taylor-Strasse 2, 12489, Berlin, Germany
| | - Xavier Le Guével
- Institute for Advanced Biosciences, Université Grenoble Alpes/ INSERM1209/CNRS-UMR5309, 38700, La Tronche, France
| | - Rodolphe Antoine
- Institut Lumière Matière, UMR5306, Université Claude Bernard Lyon1-CNRS, Université de Lyon, 69622, Villeurbanne Cedex, France
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