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Rocha J, Shapiro LR, Chimileski S, Kolter R. Complementary roles of EPS, T3SS and Expansin for virulence of Erwinia tracheiphila, the causative agent of cucurbit wilt. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.06.24.600446. [PMID: 38979168 PMCID: PMC11230154 DOI: 10.1101/2024.06.24.600446] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/10/2024]
Abstract
Erwinia tracheiphila (Smith) is a recently emerged plant pathogen that causes severe economic losses in cucurbit crops in temperate Eastern North America. E. tracheiphila is xylem restricted, and virulence is thought to be related to Exopolysaccharides (EPS) and biofilm formation, which occlude the passage of sap in xylem vessels and causes systemic wilt. However, the role of EPS and biofilm formation, and their contribution to disease in relation to other virulence loci are unknown. Here, we use deletion mutants to explore the roles of EPS, Hrp Type III secretion system (Hrp T3SS) and Expansin in plant colonization and virulence. Then, we quantify the expression of the genes encoding these factors during infection. Our results show that Exopolysaccharides are essential for E. tracheiphila survival in host plants, while Hrp T3SS and Expansin are dispensable for survival but needed for systemic wilt symptom development. EPS and Hrp T3SS display contrasting expression patterns in the plant, reflecting their relevance in different stages of the infection. Finally, we show that expression of the eps and hrpT3SS operons is downregulated in mildly increased temperatures, suggesting a link between expression of these virulence factors and geographic restriction of E. tracheiphila to temperate regions. Our work highlights how E. tracheiphila virulence is a complex trait where several loci are coordinated during infection. These results further shed light into the relationship between virulence factors and the ecology of this pathosystem, which will be essential for developing sustainable management strategies for this emerging pathogen.
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Affiliation(s)
- Jorge Rocha
- Department of Microbiology, Harvard Medical School. 77 Avenue Louis Pasteur, Boston MA, US 02115
- Progama de Agricultura en Zonas Áridas; Centro de Investigaciones Biológicas del Noroeste. Av. Instituto Politécnico Nacional 195, La Paz, B.C.S. México 23096
| | - Lori R Shapiro
- Department of Microbiology, Harvard Medical School. 77 Avenue Louis Pasteur, Boston MA, US 02115
| | - Scott Chimileski
- Department of Microbiology, Harvard Medical School. 77 Avenue Louis Pasteur, Boston MA, US 02115
- Josephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory; Woods Hole, MA, US 02543
| | - Roberto Kolter
- Department of Microbiology, Harvard Medical School. 77 Avenue Louis Pasteur, Boston MA, US 02115
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Jenny LA, Shapiro LR, Davis CC, Jonathan Davies T, Pierce NE, Meineke E. Herbarium specimens reveal herbivory patterns across the genus Cucurbita. AMERICAN JOURNAL OF BOTANY 2023; 110:e16126. [PMID: 36633920 DOI: 10.1002/ajb2.16126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2022] [Revised: 12/12/2022] [Accepted: 12/14/2022] [Indexed: 06/17/2023]
Abstract
PREMISE Quantifying how closely related plant species differ in susceptibility to insect herbivory is important for understanding the variation in evolutionary pressures on plant functional traits. However, empirically measuring in situ variation in herbivory spanning the geographic range of a plant-insect complex is logistically difficult. Recently, new methods have been developed using herbarium specimens to investigate patterns in plant-insect symbioses across large geographic scales. Such investigations provide insights into how accelerated anthropogenic changes may impact plant-insect interactions that are of ecological or agricultural importance. METHODS Here, we analyze 274 pressed herbarium samples to investigate variation in herbivory damage in 13 different species of the economically important plant genus Cucurbita (Cucurbitaceae). This collection is composed of specimens of wild, undomesticated Cucurbita that were collected from across their native range, and Cucurbita cultivars collected from both within their native range and from locations where they have been introduced for agriculture in temperate North America. RESULTS Herbivory is common on individuals of all Cucurbita species collected throughout their geographic ranges. However, estimates of herbivory varied considerably among individuals, with mesophytic species accruing more insect damage than xerophytic species, and wild specimens having more herbivory than specimens collected from human-managed habitats. CONCLUSIONS Our study suggests that long-term evolutionary changes in habitat from xeric to mesic climates and wild to human-managed habitats may mediate the levels of herbivory pressure from coevolved herbivores. Future investigations into the potential factors that contribute to herbivory may inform the management of domesticated crop plants and their insect herbivores.
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Affiliation(s)
- Laura A Jenny
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, 02138, United States
| | - Lori R Shapiro
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, 02138, United States
- Department of Applied Ecology, North Carolina State University, Raleigh, North Carolina, 27695, United States
| | - Charles C Davis
- Harvard University Herbaria, Department of Organismal and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, 02138, United States
| | - T Jonathan Davies
- Departments of Botany, and Forest & Conservation Sciences, University of British Columbia, Vancouver, British Columbia, BC V6T 1Z4, Canada
- African Centre for DNA Barcoding, University of Johannesburg, Johannesburg, Gauteng, 2028, South Africa
| | - Naomi E Pierce
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, 02138, United States
| | - Emily Meineke
- Department of Entomology and Nematology, University of California, Davis, Davis, California, 95616, United States
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Parvathi MS, Antony PD, Kutty MS. Multiple Stressors in Vegetable Production: Insights for Trait-Based Crop Improvement in Cucurbits. FRONTIERS IN PLANT SCIENCE 2022; 13:861637. [PMID: 35592574 PMCID: PMC9111534 DOI: 10.3389/fpls.2022.861637] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/24/2022] [Accepted: 03/14/2022] [Indexed: 06/15/2023]
Abstract
Vegetable production is a key determinant of contribution from the agricultural sector toward national Gross Domestic Product in a country like India, the second largest producer of fresh vegetables in the world. This calls for a careful scrutiny of the threats to vegetable farming in the event of climate extremes, environmental degradation and incidence of plant pests/diseases. Cucurbits are a vast group of vegetables grown almost throughout the world, which contribute to the daily diet on a global scale. Increasing food supply to cater to the ever-increasing world population, calls for intensive, off-season and year-round cultivation of cucurbits. Current situation predisposes these crops to a multitude of stressors, often simultaneously, under field conditions. This scenario warrants a systematic understanding of the different stress specific traits/mechanisms/pathways and their crosstalk that have been examined in cucurbits and identification of gaps and formulation of perspectives on prospective research directions. The careful dissection of plant responses under specific production environments will help in trait identification for genotype selection, germplasm screens to identify superior donors or for direct genetic manipulation by modern tools for crop improvement. Cucurbits exhibit a wide range of acclimatory responses to both biotic and abiotic stresses, among which a few like morphological characters like waxiness of cuticle; primary and secondary metabolic adjustments; membrane thermostability, osmoregulation and, protein and reactive oxygen species homeostasis and turnover contributing to cellular tolerance, appear to be common and involved in cross talk under combinatorial stress exposures. This is assumed to have profound influence in triggering system level acclimation responses that safeguard growth and metabolism. The possible strategies attempted such as grafting initiatives, molecular breeding, novel genetic manipulation avenues like gene editing and ameliorative stress mitigation approaches, have paved way to unravel the prospects for combined stress tolerance. The advent of next generation sequencing technologies and big data management of the omics output generated have added to the mettle of such emanated concepts and ideas. In this review, we attempt to compile the progress made in deciphering the biotic and abiotic stress responses of cucurbits and their associated traits, both individually and in combination.
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Affiliation(s)
- M. S. Parvathi
- Department of Plant Physiology, College of Agriculture Vellanikkara, Kerala Agricultural University, Thrissur, India
| | - P. Deepthy Antony
- Centre for Intellectual Property Rights, Technology Management and Trade, College of Agriculture Vellanikkara, Kerala Agricultural University, Thrissur, India
| | - M. Sangeeta Kutty
- Department of Vegetable Science, College of Agriculture Vellanikkara, Kerala Agricultural University, Thrissur, India
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Wielkopolan B, Jakubowska M, Obrępalska-Stęplowska A. Beetles as Plant Pathogen Vectors. FRONTIERS IN PLANT SCIENCE 2021; 12:748093. [PMID: 34721475 PMCID: PMC8549695 DOI: 10.3389/fpls.2021.748093] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2021] [Accepted: 09/15/2021] [Indexed: 05/16/2023]
Abstract
Herbivorous insects, likewise, other organisms, are exposed to diverse communities of microbes from the surrounding environment. Insects and microorganisms associated with them share a range of relationships, including symbiotic and pathogenic. Insects damage plants by feeding on them and delivering plant pathogens to wounded places, from where pathogens spread over the plant. Thus insects can be considered as both pests and reservoirs or vectors of plant pathogens. Although beetles are not mentioned in the first place as plant pathogen vectors, their transmission of pathogens also takes place and affects the ecosystem. Here we present an overview of beetles as vectors of plant pathogens, including viruses, bacteria, fungi, nematodes, and Oomycota, which are responsible for developing plant diseases that can have a significant impact on crop yield and quality.
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Affiliation(s)
- Beata Wielkopolan
- Department of Monitoring and Signaling of Agrophages, Institute of Plant Protection – National Research Institute, Poznań, Poland
| | - Magdalena Jakubowska
- Department of Monitoring and Signaling of Agrophages, Institute of Plant Protection – National Research Institute, Poznań, Poland
| | - Aleksandra Obrępalska-Stęplowska
- Department of Molecular Biology and Biotechnology, Institute of Plant Protection – National Research Institute, Poznań, Poland
- *Correspondence: Aleksandra Obrępalska-Stęplowska,
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Rocha J, Shapiro LR, Kolter R. A horizontally acquired expansin gene increases virulence of the emerging plant pathogen Erwinia tracheiphila. Sci Rep 2020; 10:21743. [PMID: 33303810 PMCID: PMC7729394 DOI: 10.1038/s41598-020-78157-w] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2020] [Accepted: 11/09/2020] [Indexed: 12/16/2022] Open
Abstract
Erwinia tracheiphila is a bacterial plant pathogen that causes a fatal wilt infection in some cucurbit crop plants. Wilt symptoms are thought to be caused by systemic bacterial colonization through xylem that impedes sap flow. However, the genetic determinants of within-plant movement are unknown for this pathogen species. Here, we find that E. tracheiphila has horizontally acquired an operon with a microbial expansin (exlx) gene adjacent to a glycoside hydrolase family 5 (gh5) gene. Plant inoculation experiments with deletion mutants in the individual genes (Δexlx and Δgh5) and the full operon (Δexlx-gh5) resulted in decreased severity of wilt symptoms, decreased mortality rate, and impaired systemic colonization compared to the Wt strain. Co-inoculation experiments with Wt and Δexlx-gh5 rescued the movement defect of the mutant strain, suggesting that expansin and GH5 function extracellularly. Together, these results show that expansin-GH5 contributes to systemic movement through xylem, leading to rapid wilt symptom development and higher rates of plant death. The presence of expansin genes in diverse species of bacterial and fungal wilt-inducing pathogens suggests that microbial expansin proteins may be an under-appreciated virulence factor for many pathogen species.
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Affiliation(s)
- Jorge Rocha
- Department of Microbiology, Harvard Medical School, Boston, MA, USA.
- Conacyt-Centro de Investigación y Desarrollo en Agrobiotecnología Alimentaria, San Agustin Tlaxiaca, 42163, Hidalgo, Mexico.
| | - Lori R Shapiro
- Department of Microbiology, Harvard Medical School, Boston, MA, USA
| | - Roberto Kolter
- Department of Microbiology, Harvard Medical School, Boston, MA, USA
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de Souza Pacheco I, Manzano Galdeano D, Spotti Lopes JR, Machado MA. Development on Infected Citrus over Generations Increases Vector Infection by ' Candidatus Liberibacter Asiaticus in Diaphorina citri'. INSECTS 2020; 11:insects11080469. [PMID: 32722346 PMCID: PMC7469140 DOI: 10.3390/insects11080469] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2020] [Revised: 06/29/2020] [Accepted: 06/30/2020] [Indexed: 05/13/2023]
Abstract
'Candidatus Liberibacter asiaticus' (CLas) is a major causal agent of citrus Huanglongbing (HLB), which is transmitted by Asian citrus psyllid (ACP), Diaphorina citri, causing severe losses in various regions of the world. Vector efficiency is higher when acquisition occurs by ACP immature stages and over longer feeding periods. In this context, our goal was to evaluate the progression of CLas population and infection rate over four ACP generations that continuously developed on infected citrus plants. We showed that the frequency of CLas-positive adult samples increased from 42% in the parental generation to 100% in the fourth generation developing on CLas-infected citrus. The bacterial population in the vector also increased over generations. This information reinforces the importance of HLB management strategies, such as vector control and eradication of diseased citrus trees, to avoid the development of CLas-infected ACP generations with higher bacterial loads and, likely, a higher probability of spreading the pathogen in citrus orchards.
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Affiliation(s)
- Inaiara de Souza Pacheco
- Centro de Citricultura Sylvio Moreira, Instituto Agronômico de Campinas, Cordeirópolis, São Paulo 13490-970, Brazil; (D.M.G.); (M.A.M.)
- Instituto de Biologia, Universidade Estadual de Campinas, Campinas, São Paulo 13083-862, Brazil
- Correspondence:
| | - Diogo Manzano Galdeano
- Centro de Citricultura Sylvio Moreira, Instituto Agronômico de Campinas, Cordeirópolis, São Paulo 13490-970, Brazil; (D.M.G.); (M.A.M.)
| | - João Roberto Spotti Lopes
- Departamento de Entomologia e Acarologia, Escola Superior de Agricultura “Luiz de Queiroz”—Universidade de São Paulo, Piracicaba, São Paulo 13418-900, Brazil;
| | - Marcos Antonio Machado
- Centro de Citricultura Sylvio Moreira, Instituto Agronômico de Campinas, Cordeirópolis, São Paulo 13490-970, Brazil; (D.M.G.); (M.A.M.)
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Adler LS, Barber NA, Biller OM, Irwin RE. Flowering plant composition shapes pathogen infection intensity and reproduction in bumble bee colonies. Proc Natl Acad Sci U S A 2020; 117:11559-11565. [PMID: 32393622 PMCID: PMC7261119 DOI: 10.1073/pnas.2000074117] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022] Open
Abstract
Pathogens pose significant threats to pollinator health and food security. Pollinators can transmit diseases during foraging, but the consequences of plant species composition for infection is unknown. In agroecosystems, flowering strips or hedgerows are often used to augment pollinator habitat. We used canola as a focal crop in tents and manipulated flowering strip composition using plant species we had previously shown to result in higher or lower bee infection in short-term trials. We also manipulated initial colony infection to assess impacts on foraging behavior. Flowering strips using high-infection plant species nearly doubled bumble bee colony infection intensity compared to low-infection plant species, with intermediate infection in canola-only tents. Both infection treatment and flowering strips reduced visits to canola, but we saw no evidence that infection treatment shifted foraging preferences. Although high-infection flowering strips increased colony infection intensity, colony reproduction was improved with any flowering strips compared to canola alone. Effects of flowering strips on colony reproduction were explained by nectar availability, but effects of flowering strips on infection intensity were not. Thus, flowering strips benefited colony reproduction by adding floral resources, but certain plant species also come with a risk of increased pathogen infection intensity.
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Affiliation(s)
- Lynn S Adler
- Department of Biology, University of Massachusetts, Amherst, MA 01003;
| | - Nicholas A Barber
- Ecology Program Area, Department of Biology, San Diego State University, San Diego, CA 92182
| | - Olivia M Biller
- Department of Occupational Therapy, Thomas Jefferson University, Philadelphia, PA 19107
| | - Rebecca E Irwin
- Department of Applied Ecology, North Carolina State University, Raleigh, NC 27695
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8
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Vrisman CM, Deblais L, Helmy YA, Johnson R, Rajashekara G, Miller SA. Discovery and Characterization of Low-Molecular Weight Inhibitors of Erwinia tracheiphila. PHYTOPATHOLOGY 2020; 110:989-998. [PMID: 31971868 DOI: 10.1094/phyto-11-19-0440-r] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Plant pathogenic bacteria in the genus Erwinia cause economically important diseases, including bacterial wilt of cucurbits caused by Erwinia tracheiphila. Conventional bactericides are insufficient to control this disease. Using high-throughput screening, 464 small molecules (SMs) with either cidal or static activity at 100 µM against a cucumber strain of E. tracheiphila were identified. Among them, 20 SMs (SM1 to SM20), composed of nine distinct chemical moiety structures, were cidal to multiple E. tracheiphila strains at 100 µM. These lead SMs had low toxicity to human cells and honey bees at 100 µM. No phytotoxicity was observed on melon plants at 100 µM, except when SM12 was either mixed with Silwet L-77 and foliar sprayed or when delivered through the roots. Lead SMs did not inhibit the growth of beneficial Pseudomonas and Enterobacter species but inhibited the growth of Bacillus species. Nineteen SMs were cidal to Xanthomonas cucurbitae and showed >50% growth inhibition against Pseudomonas syringae pv. lachrymans. In addition, 19 SMs were cidal or static against Erwinia amylovora in vitro. Five SMs demonstrated potential to suppress E. tracheiphila when foliar sprayed on melon plants at 2× the minimum bactericidal concentration. Thirteen SMs reduced Et load in melon plants when delivered via roots. Temperature and light did not affect the activity of SMs. In vitro cidal activity was observed after 3 to 10 h of exposure to these five SMs. Here, we report 19 SMs that provide chemical scaffolds for future development of bactericides against plant pathogenic bacterial species.
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Affiliation(s)
- Cláudio M Vrisman
- Department of Plant Pathology, Ohio Agricultural Research and Development Center, The Ohio State University, Wooster, OH 44691
| | - Loïc Deblais
- Food Animal Health Research Program, Ohio Agricultural Research and Development Center, The Ohio State University, Wooster, OH 44691
| | - Yosra A Helmy
- Food Animal Health Research Program, Ohio Agricultural Research and Development Center, The Ohio State University, Wooster, OH 44691
| | - Reed Johnson
- Department of Entomology, Ohio Agricultural Research and Development Center, The Ohio State University, Wooster, OH 44691
| | - Gireesh Rajashekara
- Food Animal Health Research Program, Ohio Agricultural Research and Development Center, The Ohio State University, Wooster, OH 44691
| | - Sally A Miller
- Department of Plant Pathology, Ohio Agricultural Research and Development Center, The Ohio State University, Wooster, OH 44691
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Ingwell LL, Kaplan I. Insect Exclusion Screens Reduce Cucumber Beetle Infestations in High Tunnels, Increasing Cucurbit Yield. JOURNAL OF ECONOMIC ENTOMOLOGY 2019; 112:1765-1773. [PMID: 30924503 DOI: 10.1093/jee/toz060] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2018] [Indexed: 06/09/2023]
Abstract
As high tunnel vegetable production acreage increases in the United States, so does the need for management strategies tailored to their unique growing environment. Cucumbers are an ideal crop in these systems; they can be vertically trellised to maximize the production area and provide high yields to balance the increased costs associated with high tunnel construction. One of the most limiting factors in cucurbit production in general is the cucumber beetle complex and the bacterial pathogen they transmit. In this study, we investigated the optimal size of netting installed on high tunnels to prevent cucumber beetle colonization while maintaining ventilation to reduce heat stress. Of the three mesh sizes investigated across 4 yr, the intermediate mesh with a pore size of 0.72 × 0.97 mm was optimal to exclude cucumber beetles, maintain ventilation, and produce the highest yields for both cucumber and melon plants. The smallest (0.16 mm2) and intermediate mesh sizes resulted in secondary pest outbreaks (e.g., aphids), which did not occur in open tunnels and to a lesser extent in tunnels covered with the largest (1.00 × 4.00 mm) mesh. Despite these secondary pests, yield was higher in small- and intermediate-sized mesh treatments due to relief from cucumber beetle infestations, including striped (Acalymma vittatum Fabr. (Coleoptera: Chrysomelidae)) and spotted (Diabrotica undecimpunctata howardi Barber (Coleoptera: Chrysomelidae)) beetles. Overall, we conclude that insect exclusion netting is an effective method to exclude cucumber beetles from high tunnels, but mesh size should be carefully considered when weighing the collective effects on yield and primary/secondary pest abundance.
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Affiliation(s)
- Laura L Ingwell
- Department of Entomology, Purdue University, West Lafayette, IN
| | - Ian Kaplan
- Department of Entomology, Purdue University, West Lafayette, IN
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10
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Draft Genome Sequence of an Erwinia tracheiphila Isolate from an Infected Muskmelon (Cucumis melo). Microbiol Resour Announc 2018; 7:MRA01058-18. [PMID: 30533754 PMCID: PMC6256489 DOI: 10.1128/mra.01058-18] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2018] [Accepted: 10/04/2018] [Indexed: 02/01/2023] Open
Abstract
Erwinia tracheiphila is a bacterial plant pathogen emerging in eastern North America. To aid in understanding genetic variation within E. tracheiphila, here we sequence the first reference genome of an infected muskmelon (Cucumis melo). Erwinia tracheiphila is a bacterial plant pathogen emerging in eastern North America. To aid in understanding genetic variation within E. tracheiphila, here we sequence the first reference genome of an infected muskmelon (Cucumis melo). The genome assembles into a single chromosomal contig, three plasmid contigs, and one bacteriophage contig.
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Shapiro LR, Paulson JN, Arnold BJ, Scully ED, Zhaxybayeva O, Pierce NE, Rocha J, Klepac-Ceraj V, Holton K, Kolter R. An Introduced Crop Plant Is Driving Diversification of the Virulent Bacterial Pathogen Erwinia tracheiphila. mBio 2018; 9:e01307-18. [PMID: 30279283 PMCID: PMC6168856 DOI: 10.1128/mbio.01307-18] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2018] [Accepted: 08/17/2018] [Indexed: 12/14/2022] Open
Abstract
Erwinia tracheiphila is the causal agent of bacterial wilt of cucurbits, an economically important phytopathogen affecting an economically important phytopathogen affecting few cultivated Cucurbitaceae few cultivated Cucurbitaceae host plant species in temperate eastern North America. However, essentially nothing is known about E. tracheiphila population structure or genetic diversity. To address this shortcoming, a representative collection of 88 E. tracheiphila isolates was gathered from throughout its geographic range, and their genomes were sequenced. Phylogenomic analysis revealed three genetic clusters with distinct hrpT3SS virulence gene repertoires, host plant association patterns, and geographic distributions. Low genetic heterogeneity within each cluster suggests a recent population bottleneck followed by population expansion. We showed that in the field and greenhouse, cucumber (Cucumis sativus), which was introduced to North America by early Spanish conquistadors, is the most susceptible host plant species and the only species susceptible to isolates from all three lineages. The establishment of large agricultural populations of highly susceptible C. sativus in temperate eastern North America may have facilitated the original emergence of E. tracheiphila into cucurbit agroecosystems, and this introduced plant species may now be acting as a highly susceptible reservoir host. Our findings have broad implications for agricultural sustainability by drawing attention to how worldwide crop plant movement, agricultural intensification, and locally unique environments may affect the emergence, evolution, and epidemic persistence of virulent microbial pathogens.IMPORTANCEErwinia tracheiphila is a virulent phytopathogen that infects two genera of cucurbit crop plants, Cucurbita spp. (pumpkin and squash) and Cucumis spp. (muskmelon and cucumber). One of the unusual ecological traits of this pathogen is that it is limited to temperate eastern North America. Here, we complete the first large-scale sequencing of an E. tracheiphila isolate collection. From phylogenomic, comparative genomic, and empirical analyses, we find that introduced Cucumis spp. crop plants are driving the diversification of E. tracheiphila into multiple lineages. Together, the results from this study show that locally unique biotic (plant population) and abiotic (climate) conditions can drive the evolutionary trajectories of locally endemic pathogens in unexpected ways.
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Affiliation(s)
- Lori R Shapiro
- Department of Microbiology and Immunology, Harvard Medical School, Boston, Massachusetts, USA
- Department of Organismal and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, USA
- Department of Applied Ecology, North Carolina State University, Raleigh, North Carolina, USA
| | - Joseph N Paulson
- Department of Biostatistics, Product Development, Genentech Inc., San Francisco, California, USA
| | - Brian J Arnold
- Center for Communicable Disease Dynamics, Harvard T. H. Chan School of Public Health, Boston, Massachusetts, USA
| | - Erin D Scully
- Stored Product Insect and Engineering Research Unit, USDA-ARS Center for Grain and Animal Health Research, Manhattan, Kansas, USA
| | - Olga Zhaxybayeva
- Department of Biological Sciences, Dartmouth College, Hanover, New Hampshire, USA
- Department of Computer Science, Dartmouth College, Hanover, New Hampshire, USA
| | - Naomi E Pierce
- Department of Organismal and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, USA
| | - Jorge Rocha
- Department of Microbiology and Immunology, Harvard Medical School, Boston, Massachusetts, USA
- CIDEA Consortium Conacyt-Centro de Investigación en Alimentación y Desarrollo, Hermosillo, Mexico
| | - Vanja Klepac-Ceraj
- Department of Biological Sciences, Wellesley College, Wellesley, Massachusetts, USA
| | - Kristina Holton
- Department of Biostatistics, Dana-Farber Cancer Institute, Boston, Massachusetts, USA
| | - Roberto Kolter
- Department of Microbiology and Immunology, Harvard Medical School, Boston, Massachusetts, USA
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12
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Roberts DC, Fleischer SJ, Sakamoto JM, Rasgon JL. Potential biological control of Erwinia tracheiphila by internal alimentary canal interactions in Acalymma vittatum with Pseudomonas fluorescens. J Appl Microbiol 2018; 125:1137-1146. [PMID: 29890026 DOI: 10.1111/jam.13950] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2018] [Revised: 05/01/2018] [Accepted: 05/19/2018] [Indexed: 11/27/2022]
Abstract
AIMS We aim to determine if Pseudomonas fluorescens is a viable biological control for Erwinia tracheiphila within the insect vector, Acalymma vittatum. METHODS AND RESULTS Pseudomonas fluorescens secreted fluorescein and inhibited growth of E. tracheiphila in disc diffusion assays. To determine if this antagonism was conserved within the insect vector, we performed in vivo assays by orally injecting beetles with bacterial treatments and fluorescent in situ hybridization to determine bacterial presence within the alimentary canal. CONCLUSIONS Pseudomonas fluorescens inhibited the growth of E. tracheiphila on a nutrient-limiting medium. In situ experiments demonstrated that P. fluorescens is maintained within the alimentary canal of the beetle for at least 4 days, and co-occurred with E. tracheiphila. When beetles were first presented with Pseudomonas and then challenged with E. tracheiphila, E. tracheiphila was not recovered via FISH after 4 days. These data suggest that P. fluorescens has potential as a biological control agent to limit E. tracheiphila within the insect vector. SIGNIFICANCE AND IMPACT OF THE STUDY This is a novel approach for controlling E. tracheiphila that has the potential to decrease reliance on insecticides, providing a safer environment for pollinators and growers.
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Affiliation(s)
- D C Roberts
- The Pennsylvania State University, University Park, PA, USA
| | - S J Fleischer
- The Pennsylvania State University, University Park, PA, USA
| | - J M Sakamoto
- The Pennsylvania State University, University Park, PA, USA
| | - J L Rasgon
- The Pennsylvania State University, University Park, PA, USA
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Harth JE, Ferrari MJ, Helms AM, Tooker JF, Stephenson AG. Zucchini Yellow Mosaic Virus Infection Limits Establishment and Severity of Powdery Mildew in Wild Populations of Cucurbita pepo. FRONTIERS IN PLANT SCIENCE 2018; 9:792. [PMID: 29951077 PMCID: PMC6008421 DOI: 10.3389/fpls.2018.00792] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2017] [Accepted: 05/24/2018] [Indexed: 06/01/2023]
Abstract
Few studies have examined the combined effect of multiple parasites on host fitness. Previous work in the Cucurbita pepo pathosystem indicates that infection with Zucchini yellow mosaic virus (ZYMV) reduces exposure to a second insect-vectored parasite (Erwinia tracheiphila). In this study, we performed two large-scale field experiments employing wild gourds (Cucurbita pepo ssp. texana), including plants with a highly introgressed transgene conferring resistance to ZYMV, to examine the interaction of ZYMV and powdery mildew, a common fungal disease. We found that ZYMV-infected plants are more resistant to powdery mildew (i.e., less likely to experience powdery mildew infection and when infected with powdery mildew, have reduced severity of powdery mildew symptoms). As a consequence, during widespread viral epidemics, proportionally more transgenic plants get powdery mildew than non-transgenic plants, potentially mitigating the benefits of the transgene. A greenhouse study using ZYMV-inoculated and non-inoculated controls (non-transgenic plants) revealed that ZYMV-infected plants were more resistant to powdery mildew than controls, suggesting that the transgene itself had no direct effect on the powdery mildew resistance in our field study. Additionally, we found evidence of elevated levels of salicylic acid, a phytohormone that mediates anti-pathogen defenses, in ZYMV-infected plants, suggesting that viral infection induces a plant immune response (systemic acquired resistance), thereby reducing plant susceptibility to powdery mildew infection.
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Affiliation(s)
- Jacquelyn E. Harth
- Department of Biology, The Pennsylvania State University, University Park, PA, United States
| | - Matthew J. Ferrari
- Department of Biology, The Pennsylvania State University, University Park, PA, United States
- Center for Infectious Disease Dynamics, The Pennsylvania State University, University Park, PA, United States
| | - Anjel M. Helms
- Department of Entomology, The Pennsylvania State University, University Park, PA, United States
| | - John F. Tooker
- Department of Entomology, The Pennsylvania State University, University Park, PA, United States
| | - Andrew G. Stephenson
- Department of Biology, The Pennsylvania State University, University Park, PA, United States
- Center for Infectious Disease Dynamics, The Pennsylvania State University, University Park, PA, United States
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14
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Buchanan AL, Hooks CRR. Influence of Winter Cover Crop Mulch on Arthropods in a Reduced Tillage Cucurbit System. ENVIRONMENTAL ENTOMOLOGY 2018; 47:292-299. [PMID: 29438476 DOI: 10.1093/ee/nvy004] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Winter cover crop mulches can diversify agricultural habitats and provide a range of benefits for crop production and pest management. Here we report the influence of strip tilled winter cover crop mulches on arthropod abundance in organic vegetable plots. Crookneck squash (Cucurbita pepo L.; Cucurbitales: Cucurbitaceae) was direct seeded into mowed and strip tilled barley (Hordeum vulgare L.; Poales: Poaceae), crimson clover (Trifolium incarnatum L.; Fabales: Fabaceae), a barley + crimson clover mixture, or a no-cover crop control. Arthropods on squash plants were assessed weekly using visual counts. Seed predation was assessed using weed seed arenas. In 2013, mixed species cover crops produced the most ground cover, fewest weeds, and largest squash plants, but herbivore and predator abundance were not correlated with any of those factors. In 2014, mixed species cover crops again produced the most ground cover and fewest weeds, but the largest squash plants were found in no-cover crop control plots, which also had the highest herbivore abundance per plant. Predator and herbivore abundance were positively correlated with squash plant size in 2014. There were no differences in seed predation across treatments. Differences in ground cover biomass and weed presence between the 2 yr may have contributed to differences in squash plant quality and subsequent herbivore abundance between seasons. Results suggest that arthropods on plants responded largely indirectly to cover crops through host plant quality. Results are interpreted in light of overall costs and benefits of cover cropping.
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15
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Bahar MH, Wist TJ, Bekkaoui DR, Hegedus DD, Olivier CY. Aster leafhopper survival and reproduction, and Aster yellows transmission under static and fluctuating temperatures, using ddPCR for phytoplasma quantification. Sci Rep 2018; 8:227. [PMID: 29321551 PMCID: PMC5762862 DOI: 10.1038/s41598-017-18437-0] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2017] [Accepted: 12/12/2017] [Indexed: 01/14/2023] Open
Abstract
Aster yellows (AY) is an important disease of Brassica crops and is caused by Candidatus Phytoplasma asteris and transmitted by the insect vector, Aster leafhopper (Macrosteles quadrilineatus). Phytoplasma-infected Aster leafhoppers were incubated at various constant and fluctuating temperatures ranging from 0 to 35 °C with the reproductive host plant barley (Hordium vulgare). At 0 °C, leafhopper adults survived for 18 days, but failed to reproduce, whereas at 35 °C insects died within 18 days, but successfully reproduced before dying. Temperature fluctuation increased thermal tolerance in leafhoppers at 25 °C and increased fecundity of leafhoppers at 5 and 20 °C. Leafhopper adults successfully infected and produced AY-symptoms in canola plants after incubating for 18 days at 0-20 °C on barley, indicating that AY-phytoplasma maintains its virulence in this temperature range. The presence and number of AY-phytoplasma in insects and plants were confirmed by droplet digital PCR (ddPCR) quantification. The number of phytoplasma in leafhoppers increased over time, but did not differ among temperatures. The temperatures associated with a typical crop growing season on the Canadian Prairies will not limit the spread of AY disease by their predominant insect vector. Also, ddPCR quantification is a useful tool for early detection and accurate quantification of phytoplasma in plants and insects.
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Affiliation(s)
- Md H Bahar
- Charlottetown Research and Development Centre, Agriculture and Agri-Food Canada, 440 University Avenue, Charlottetown, PE, C1A 4N6, Canada.
| | - Tyler J Wist
- Saskatoon Research Centre, Agriculture and Agri-Food Canada, 7 Science Place, Saskatoon, Saskatchewan, S7N 0X2, Canada
| | - Diana R Bekkaoui
- Saskatoon Research Centre, Agriculture and Agri-Food Canada, 7 Science Place, Saskatoon, Saskatchewan, S7N 0X2, Canada
| | - Dwayne D Hegedus
- Saskatoon Research Centre, Agriculture and Agri-Food Canada, 7 Science Place, Saskatoon, Saskatchewan, S7N 0X2, Canada
| | - Chrystel Y Olivier
- Saskatoon Research Centre, Agriculture and Agri-Food Canada, 7 Science Place, Saskatoon, Saskatchewan, S7N 0X2, Canada
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16
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Quinn NF, Brainard DC, Szendrei Z. The Effect of Conservation Tillage and Cover Crop Residue on Beneficial Arthropods and Weed Seed Predation in Acorn Squash. ENVIRONMENTAL ENTOMOLOGY 2016; 45:1543-1551. [PMID: 28028103 DOI: 10.1093/ee/nvw139] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2016] [Accepted: 09/14/2016] [Indexed: 06/06/2023]
Abstract
Conservation tillage combined with cover crops or mulching may enhance natural enemy activity in agroecosystems by reducing soil disturbance and increasing habitat structural complexity. In particular, weed seed predation can increase with vegetation cover and reduced tillage, indicating that mulches may improve the quality of the habitat for weed seed foraging. The purpose of this study was to quantify the effects of tillage and mulching for conservation biological control in cucurbit fields. The effects of mulch and reduced tillage on arthropods and rates of weed seed loss from arenas were examined in field trials on sandy soils in 2014 and 2015. Experimental factors included tillage and cover crop, each with two levels: strip-tillage or full-tillage, and cover crop mulch (rye residue) or no cover crop mulch (unmulched). Arthropod abundance on the crop foliage was not affected by tillage or cover crops. Contrary to expectations, epigeal natural enemies of insects and rates of weed seed removal either did not respond to treatments or were greater in full-tilled plots and plots without mulch. Our study demonstrates the potential importance of weed seed predators in reducing weed seedbanks in vegetable agroecosystems, and suggests that early-season tillage may not be detrimental to epigeal predator assemblages.
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Affiliation(s)
- N F Quinn
- Department of Entomology, Food Safety and Toxicology Bldg., Michigan State University, 1129 Farm Lane Rm. 348, East Lansing, MI 48824 (; )
- Present Address: Department of Entomology, Virginia Polytechnic and State University, Price Hall, 170 Drillfield Dr., Rm. 216A, Blacksburg, VA 24061
| | - D C Brainard
- Department of Horticulture, Plant and Soil Science Bldg., Michigan State University, 1066 Bogue St., Room A440A, East Lansing, MI 48824
| | - Z Szendrei
- Department of Entomology, Food Safety and Toxicology Bldg., Michigan State University, 1129 Farm Lane Rm. 348, East Lansing, MI 48824 (; )
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17
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Vrisman CM, Deblais L, Rajashekara G, Miller SA. Differential Colonization Dynamics of Cucurbit Hosts by Erwinia tracheiphila. PHYTOPATHOLOGY 2016; 106:684-692. [PMID: 26926487 DOI: 10.1094/phyto-11-15-0289-r] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Bacterial wilt is one of the most destructive diseases of cucurbits in the Midwestern and Northeastern United States. Although the disease has been studied since 1900, host colonization dynamics remain unclear. Cucumis- and Cucurbita-derived strains exhibit host preference for the cucurbit genus from which they were isolated. We constructed a bioluminescent strain of Erwinia tracheiphila (TedCu10-BL#9) and colonization of different cucurbit hosts was monitored. At the second-true-leaf stage, Cucumis melo plants were inoculated with TedCu10-BL#9 via wounded leaves, stems, and roots. Daily monitoring of colonization showed bioluminescent bacteria in the inoculated leaf and petiole beginning 1 day postinoculation (DPI). The bacteria spread to roots via the stem by 2 DPI, reached the plant extremities 4 DPI, and the plant wilted 6 DPI. However, Cucurbita plants inoculated with TedCu10-BL#9 did not wilt, even at 35 DPI. Bioluminescent bacteria were detected 6 DPI in the main stem of squash and pumpkin plants, which harbored approximately 10(4) and 10(1) CFU/g, respectively, of TedCu10-BL#9 without symptoms. Although significantly less systemic plant colonization was observed in nonpreferred host Cucurbita plants compared with preferred hosts, the mechanism of tolerance of Cucurbita plants to E. tracheiphila strains from Cucumis remains unknown.
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Affiliation(s)
- Cláudio M Vrisman
- First, second, and fourth authors: Department of Plant Pathology, and second and third authors: Food Animal Health Research Program, Ohio Agricultural Research and Development Center, The Ohio State University, Wooster 44691
| | - Loïc Deblais
- First, second, and fourth authors: Department of Plant Pathology, and second and third authors: Food Animal Health Research Program, Ohio Agricultural Research and Development Center, The Ohio State University, Wooster 44691
| | - Gireesh Rajashekara
- First, second, and fourth authors: Department of Plant Pathology, and second and third authors: Food Animal Health Research Program, Ohio Agricultural Research and Development Center, The Ohio State University, Wooster 44691
| | - Sally A Miller
- First, second, and fourth authors: Department of Plant Pathology, and second and third authors: Food Animal Health Research Program, Ohio Agricultural Research and Development Center, The Ohio State University, Wooster 44691
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18
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Shapiro LR, Scully ED, Straub TJ, Park J, Stephenson AG, Beattie GA, Gleason ML, Kolter R, Coelho MC, De Moraes CM, Mescher MC, Zhaxybayeva O. Horizontal Gene Acquisitions, Mobile Element Proliferation, and Genome Decay in the Host-Restricted Plant Pathogen Erwinia Tracheiphila. Genome Biol Evol 2016; 8:649-64. [PMID: 26992913 PMCID: PMC4824170 DOI: 10.1093/gbe/evw016] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/28/2016] [Indexed: 12/18/2022] Open
Abstract
Modern industrial agriculture depends on high-density cultivation of genetically similar crop plants, creating favorable conditions for the emergence of novel pathogens with increased fitness in managed compared with ecologically intact settings. Here, we present the genome sequence of six strains of the cucurbit bacterial wilt pathogen Erwinia tracheiphila (Enterobacteriaceae) isolated from infected squash plants in New York, Pennsylvania, Kentucky, and Michigan. These genomes exhibit a high proportion of recent horizontal gene acquisitions, invasion and remarkable amplification of mobile genetic elements, and pseudogenization of approximately 20% of the coding sequences. These genome attributes indicate that E. tracheiphila recently emerged as a host-restricted pathogen. Furthermore, chromosomal rearrangements associated with phage and transposable element proliferation contribute to substantial differences in gene content and genetic architecture between the six E. tracheiphila strains and other Erwinia species. Together, these data lead us to hypothesize that E. tracheiphila has undergone recent evolution through both genome decay (pseudogenization) and genome expansion (horizontal gene transfer and mobile element amplification). Despite evidence of dramatic genomic changes, the six strains are genetically monomorphic, suggesting a recent population bottleneck and emergence into E. tracheiphila's current ecological niche.
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Affiliation(s)
- Lori R Shapiro
- Department of Organismic and Evolutionary Biology, Harvard University
| | - Erin D Scully
- Grain, Forage, and Bioenergy Research Unit, USDA-ARS, Lincoln, Nebraska and Department of Agronomy and Horticulture, University of Nebraska-Lincoln
| | | | - Jihye Park
- Graduate Program in Bioinformatics and Genomics, Pennsylvania State University Present address: Department of Pediatrics, Massachusetts General Hospital, Boston, Massachusetts
| | | | - Gwyn A Beattie
- Department of Plant Pathology and Microbiology, Iowa State University
| | - Mark L Gleason
- Department of Plant Pathology and Microbiology, Iowa State University
| | - Roberto Kolter
- Department of Microbiology and Immunology, Harvard Medical School, Boston, Massachusetts
| | - Miguel C Coelho
- Department of Molecular and Cellular Biology, Harvard University
| | | | - Mark C Mescher
- Department of Environmental Systems Science, ETH Zürich, Zürich, Switzerland
| | - Olga Zhaxybayeva
- Department of Biological Sciences, Dartmouth College Department of Computer Science, Dartmouth College
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19
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Rojas ES, Batzer JC, Beattie GA, Fleischer SJ, Shapiro LR, Williams MA, Bessin R, Bruton BD, Boucher TJ, Jesse LCH, Gleason ML. Bacterial Wilt of Cucurbits: Resurrecting a Classic Pathosystem. PLANT DISEASE 2015; 99:564-574. [PMID: 30699691 DOI: 10.1094/pdis-10-14-1068-fe] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Bacterial wilt threatens cucurbit crop production in the Midwestern and Northeastern United States. The pathogen, Erwinia tracheiphila, is a xylem-limited bacterium that affects most commercially important cucurbit species, including muskmelon, cucumber, and squash. Bacterial wilt is transmitted and overwintered by striped and spotted cucumber beetles. Since there are few commercially available resistant cultivars, disease management usually relies on use of insecticides to suppress vector populations. Although bacterial wilt was initially described more than 100 years ago, our knowledge of disease ecology and epidemiology advanced slowly for most of the 20th century. However, a recent wave of research has begun to fill in missing pieces of the bacterial wilt puzzle. This article-the first review of research toward understanding the cucurbit bacterial wilt pathosystem-recounts early findings and updates our understanding of the disease cycle, including pathogen and vector biology. We also highlight research areas that could lead to more efficient and ecologically based management of bacterial wilt.
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