Carbon isotope fractionation reveals distinct process of CH4 emission from different compartments of paddy ecosystem

Overlooked drivers of the greenhouse effect: The nutrient-methane nexus mediated by submerged macrophytes

Submerged macrophytes remediation is a commonly used technique for improving water quality and restoring habitat in aquatic ecosystems. However, the drivers of success in the submerged macrophytes assembly process and their specific impacts on methane emissions are poorly understood. Thus, we conducted a mesocosm experiment to test the growth plasticity and carbon fixation of widespread submerged macrophytes (Vallisneria natans) under different nutrient conditions. A refined dynamic chamber method was utilized to concurrently collect and quantify methane emission fluxes arising from ebullition and diffusion processes. Significant correlations were found between methane flux and variations in the physiological activities of V. nantas by the fluorescence imaging system. Our results show that exceeding tolerance thresholds of ammonia in the water significantly interfered with the photosynthetic systems in submerged leaves and the radial oxygen loss in adventitious roots. The recovery process of V. natans accelerated the consumption of dissolved oxygen, leading to increase in the populations of methanogen (153.3 % increase of mcrA genes) and subsequently elevating CH4 emission fluxes (23.7 %) under high nutrient concentrations. Conversely, V. natans increased the available organic carbon under low nutrient conditions by radial oxygen loss, further increasing CH4 emission fluxes (94.7 %). Quantitative genetic and modeling analyses revealed that plant restoration processes drive ecological niche differentiation of methanogenic and methane oxidation microorganisms, affecting methane release fluxes within the restored area. The speciation process of V. natans is incapable of simultaneously meeting improved water purification and reduced methane emissions goals.

The effect of integrated rice-frog ecosystem on rice morphological traits and methane emission from paddy fields

Integrated Rice-frog Ecosystem (IRFE) has the potential to reduce methane (CH₄) emission and maintain yields from paddy fields. However, the quantitative relationship between rice morphological traits and CH₄ emission remains to be explored. In this study, a 2-year field experiment was conducted to evaluate the effect of IRFE on rice morphological traits and CH₄ emission from paddy fields and the ecological mechanisms. This study was conducted to analyze twelve aboveground and eight underground rice morphological traits, rice yields, and CH₄ flux and emission from the paddy fields with six frog densities (0, 3750, 7500, 15,000, 30,000, and 60,000 frogs ha^-1). The results showed that IRFE reduced CH₄ emission by 24.70%-41.75% and 21.68%-51.21% in the 2018 and 2019 rice growth seasons, respectively. Moreover, CH₄ emission decreased with the increase of frogs. Frogs also increased the diameter, biomass, and volume of rice roots, thus promoting rice growth. Root biomass, thousand-grain weight, and harvest index were also closely related to the yield. Root porosity and oxygen secretion capacity were negatively correlated with CH₄ flux. Frogs increased root porosity and oxygen secretion, thereby reducing CH₄ emission. The present study demonstrated that reducing CH₄ emission and improving rice yields could be simultaneously achieved by altering rice morphological traits in IRFE.

Bark-dwelling methanotrophic bacteria decrease methane emissions from trees

Tree stems are an important and unconstrained source of methane, yet it is uncertain whether internal microbial controls (i.e. methanotrophy) within tree bark may reduce methane emissions. Here we demonstrate that unique microbial communities dominated by methane-oxidising bacteria (MOB) dwell within bark of Melaleuca quinquenervia, a common, invasive and globally distributed lowland species. In laboratory incubations, methane-inoculated M. quinquenervia bark mediated methane consumption (up to 96.3 µmol m^-2 bark d^-1) and reveal distinct isotopic δ¹³C-CH₄ enrichment characteristic of MOB. Molecular analysis indicates unique microbial communities reside within the bark, with MOB primarily from the genus Methylomonas comprising up to 25 % of the total microbial community. Methanotroph abundance was linearly correlated to methane uptake rates (R² = 0.76, p = 0.006). Finally, field-based methane oxidation inhibition experiments demonstrate that bark-dwelling MOB reduce methane emissions by 36 ± 5 %. These multiple complementary lines of evidence indicate that bark-dwelling MOB represent a potentially significant methane sink, and an important frontier for further research.

Methane and carbon dioxide emissions from different ecosystems at the end of dry period in South Vietnam

The carbon cycle includes important fluxes of methane (CH4) and carbon dioxide (CO2) between the ecosystem and the atmosphere. The fluxes may acquire either positive (release) or negative values (consumption). We calculated these fluxes based on short-campaign in situ chamber measurements from four ecosystems of South Vietnam: intact mountain rain forest, rice field, Melaleuca forest and mangroves (different sites with Avicennia or Rhizophora and a typhoon-disturbed gap). Soil measurements were supplemented by chamber measurements of gas fluxes from the tree stems. Measuring CH4 and CO2 together facilitates the assessment of the ratio between these two gases in connection with current conditions and specificity of individual ecosystems. The highest fluxes of CH4 were recorded in the Melaleuca forest, being within the range from 356.7 to 784.2 mg CH4–C m−2 day−1 accompanied by higher fluxes of CH4 release from Melaleuca tree stems (8.0–262.1 mg CH4–C m−2 day−1). Significant negative soil fluxes of CH4 were recorded in the mountain rain forest, within the range from − 0.3 to − 0.8 mg CH4–C m−2 day−1. Fluxes of CO2 indicate prevailing aerobic activity in the soils of the ecosystems investigated. Quite a large variability of CO2 fluxes was recorded in the soil of the Avicennia mangroves. The in situ measurements of different ecosystems are fundamental for follow-up measurements at different levels such as aerial and satellite gas fluxes observations.

The CO2 -equivalent balance of freshwater ecosystems is non-linearly related to productivity

Eutrophication of fresh waters results in increased CO₂ uptake by primary production, but at the same time increased emissions of CH₄ to the atmosphere. Given the contrasting effects of CO₂ uptake and CH₄ release, the net effect of eutrophication on the CO₂ -equivalent balance of fresh waters is not clear. We measured carbon fluxes (CO₂ and CH₄ diffusion, CH₄ ebullition) and CH₄ oxidation in 20 freshwater mesocosms with 10 different nutrient concentrations (total phosphorus range: mesotrophic 39 µg/L until hypereutrophic 939 µg/L) and planktivorous fish in half of them. We found that the CO₂ -equivalent balance had a U-shaped relationship with productivity, up to a threshold in hypereutrophic systems. CO₂ -equivalent sinks were confined to a narrow range of net ecosystem production (NEP) between 5 and 19 mmol O₂  m^-3  day^-1 . Our findings indicate that eutrophication can shift fresh waters from sources to sinks of CO₂ -equivalents due to enhanced CO₂ uptake, but continued eutrophication enhances CH₄ emission and transforms freshwater ecosystems to net sources of CO₂ -equivalents to the atmosphere. Nutrient enrichment but also planktivorous fish presence increased productivity, thereby regulating the resulting CO₂ -equivalent balance. Increasing planktivorous fish abundance, often concomitant with eutrophication, will consequently likely affect the CO₂ -equivalent balance of fresh waters.

Control Effects of Chelonus munakatae Against Chilo suppressalis and Impact on Greenhouse Gas Emissions From Paddy Fields

Field and pot experiments were conducted to investigate the control effects of parasitoid wasps (Chelonus munakatae Munakata) on striped rice stem borers and their impacts on N2O and CH4 emissions from paddy fields. Three treatments including no insect (NI), striped stem borer (CS) and parasitoid wasp + striped stem borer (CS+CM) were implemented. The abundance of GHG-related microorganisms in soils was determined by absolute real-time qPCR. Compared with NI, CS and CS+CM significantly increased the ratio of dead tillers, inhibited the growth and vitality of rice roots, and decreased the rice grain yield, while they significantly reduced the seasonal cumulative emissions of N2O and CH4 by 17.7-24.6 and 13.6-35.1%, and decreased the total seasonal global warming potential (GWP) by 13.6-34.7%, respectively. Moreover, compared with CS, CS+CM significantly enhanced the growth and vitality of rice roots, decreased the ratio of dead tillers, improved the rice grain yield, as well as increased the seasonal cumulative CH4 emissions and the total seasonal GWP. Principal component analysis indicated that the morphological features of rice roots play a more important role in regulating GHG emissions than GHG-related microorganisms. The results suggested that C. munakatae can effectively control the outbreak of C. suppressalis and alleviate crop damage with acceptably higher GHG emissions. It is concluded that it can be recommended as an effective, environment-friendly and sustainable approach to prevent and control C. suppressalis.

Stable Isotopes in Greenhouse Gases from Soil: A Review of Theory and Application

Greenhouse gases emitted from soil play a crucial role in the atmospheric environment and global climate change. The theory and technique of detecting stable isotopes in the atmosphere has been widely used to an investigate greenhouse gases from soil. In this paper, we review the current literature on greenhouse gases emitted from soil, including carbon dioxide (CO2), methane (CH4), and nitrous oxide (N2O). We attempt to synthesize recent advances in the theory and application of stable isotopes in greenhouse gases from soil and discuss future research needs and directions.

Stratification of Diversity and Activity of Methanogenic and Methanotrophic Microorganisms in a Nitrogen-Fertilized Italian Paddy Soil

Paddy fields are important ecosystems, as rice is the primary food source for about half of the world's population. Paddy fields are impacted by nitrogen fertilization and are a major anthropogenic source of methane. Microbial diversity and methane metabolism were investigated in the upper 60 cm of a paddy soil by qPCR, 16S rRNA gene amplicon sequencing and anoxic 13C-CH4 turnover with a suite of electron acceptors. The bacterial community consisted mainly of Acidobacteria, Chloroflexi, Proteobacteria, Planctomycetes, and Actinobacteria. Among archaea, Euryarchaeota and Bathyarchaeota dominated over Thaumarchaeota in the upper 30 cm of the soil. Bathyarchaeota constituted up to 45% of the total archaeal reads in the top 5 cm. In the methanogenic community, Methanosaeta were generally more abundant than the versatile Methanosarcina. The measured maximum methane production rate was 444 nmol gdwh-1, and the maximum rates of nitrate-, nitrite-, and iron-dependent anaerobic oxidation of methane (AOM) were 57 nmol, 55 nmol, and 56 nmol gdwh-1, respectively, at different depths. qPCR revealed a higher abundance of 'Candidatus Methanoperedens nitroreducens' than methanotrophic NC10 phylum bacteria at all depths, except at 60 cm. These results demonstrate that there is substantial potential for AOM in fertilized paddy fields, with 'Candidatus Methanoperedens nitroreducens' archaea as a potential important contributor.