Hydrazone exchange: a viable route for the solid-tethered synthesis of [2]rotaxanes

Using a hydrazone exchange methodology, resin beads were functionalised with [2]rotaxanes at up to 80% efficiency—higher than using other dynamic or irreversible synthetic approaches to form self-assembled structures on solid supports.

Dynamic covalent synthesis of [2]- and [3]rotaxanes both in solution and on solid supports

Here we demonstrate the application of a dynamic covalent chemistry methodology for the synthesis of [2]- and [3]-rotaxanes not only in solution, but also on solid supports with 65% rotaxane functionalisation of the polymer resins observed.

Surface-Assembled Mechanically Interlocked Architectures

Since the advent of supramolecular chemistry, there has been keen interest in the synthesis of interlocked molecules, given their unique potential to act as receptors, molecular machines and even motors. Despite advances in the complexity of molecular machines that can be synthesised and operated in solution, reports of the operation or even attachment of complex supramolecular systems on solid surfaces are less common. Synthetic challenges and a lack of adequate characterisation techniques to monitor the thermodynamic and kinetic influences governing assembly at the solution-surface interface has slowed progress in this area of research. This Review looks at the developments in the field of covalently assembled interlocked architectures on gold, silica and polymer surfaces, highlighting the differences observed between solution and surface assembly of these unique structures.

Synthesis of phototrappable shape-shifting molecules for adaptive guest binding

We have designed and synthesized oligosubstituted bullvalenes 1 and 2 as adaptive molecules that can change their shapes in order to bind tightly to a suitable guest. By incorporation of a photolabile o-nitroveratryloxycarbonate (NVOC) group into bullvalenes 1 and 2, tightly binding species can be selectively isolated from a population of hundreds of interconverting structural isomers. Spontaneous strain-assisted Cope rearrangements allow these shape-shifting molecules to exist in a dynamic equilibrium of configurationally distinct valence isomers, as revealed by dynamic NMR and HPLC studies. When NVOC bullvalenes 1 and 2 were exposed to UV light, the cleavage of the NVOC group resulted in a mixture of static isomers of the corresponding bullvalone. Binding studies of NVOC bisporphyrin bullvalene 1 demonstrated that the dynamic isomeric equilibrium shifted in the presence of C(60), favoring configurations with more favorable binding affinities. Irradiation of a mixture of 1 and C(60) with UV light and isolation of the major static isomer yielded an isomer of bisporphyrin bullvalone with a binding affinity for C(60) that was ∼2 times larger than that of the nonadapted isomer bisporphyrin bullvalone 41.

Supramolecular interactions between library members modulate the behavior of dynamic combinatorial libraries

The presence of a supramolecular network of interactions between library members can lead to very different responses when libraries with identical molecular composition are exposed to the same template. Numerical simulations demonstrate that supramolecular interactions between library members of covalent dynamic combinatorial libraries (DCLs) can affect both degree and selectivity of the response of the library when a template molecule is added.

Designing multistep transformations using the Hammett equation: imine exchange on a copper(I) template

Herein, we quantify how imine exchange may be used to selectively transform one metallo-organic structure into another. A series of imine exchange reactions were studied, involving a set of 4-substituted anilines, their 2-pyridylimines and 1,10-phenanthrolyl-2,9-diimines, as well as the copper complexes of these imine ligands. Electron-rich anilines were found to displace electron-poor anilines in all cases. Linear free energy relationships (LFERs) were discovered connecting the electron-donating or -withdrawing character of the 4-substituent of an aniline, as measured by the Hammett sigma(para) parameter, to that aniline's ability to compete with unsubstituted aniline to form imines. The quality of these LFERs allowed for quantitative predictions: to obtain the desired degree of selectivity in an imine exchange between anilines A and B, the required sigma(para) differential could be predicted using a variant of the Hammett equation, log(K(AB)) = rho(sigma(A) - sigma(B)). We validated this methodology by designing and executing a three-step transformation of a series of copper(I)-containing structures. Each step proceeded in predictably high yield, as calculated from sigma differentials. At each step in the series of transformations, macrocyclic structures could be created or destroyed through the selection of mono- or di-amines as subcomponents. The same methodology could be used to predict the formation of a diverse dynamic library of helicates from a set of four aniline precursors, as well as the collapse of this library into one helicate upon the addition of a fifth aniline.

A dynamic tricopper double helicate

The reaction between 8-aminoquinoline, 1,10-phenantholine-2,9-dicarbaldehyde, and copper(I) tetrafluoroborate gave a quantitative yield of a tricopper double helicate. The presence of dynamic covalent imine (C=N) bonds allowed this assembly to participate in two reactions not previously known in helicate chemistry: 1) It could be prepared through subcomponent substitution from a dicopper double helicate that contained aniline residues. An electron-poor aniline was quantitatively displaced; a more electron-rich aniline competed effectively with the aminoquinoline, setting up an equilibrium between dicopper and tricopper helicates that could be displaced towards the tricopper through the addition of further copper(I). 2) Both dicopper and tricopper helicates could be prepared simultaneously from a mixture of phenanthroline dialdehyde, aniline, and aminoquinoline, which contained all possible imine condensation products in equilibrium. Following the addition of copper(I), thermodynamic equilibration on both covalent and coordinative levels eliminated all partially-formed and mixed imine ligands from the mixture, leaving the helicates as exclusive products.

Controlling the morphology of aggregates of an amphiphilic synthetic receptor through host-guest interactions

A new amphiphilic receptor containing a macrocyclic anionic headgroup and a single alkyl chain was prepared through an efficient templated synthesis. The interdependence of the aggregation behavior and the host-guest chemistry was studied. In the absence of any guest the terminus of the alkyl chain of the receptor is included inside the hydrophobic cavity of the macrocycle (as evident from 1H NMR studies) leading to self-assembly into micrometer-long nanotubes (as evident from TEM studies). The alkyl chain can be displaced by an acridizinium bromide guest (as evident from 1H NMR and ITC), which leads to a dramatic change in aggregate size and morphology (as evident from DLS). Studies of the solubilization of Nile red suggest that the resulting aggregates are micelles with a cmc of around 35 microM. These results represent a new addition to the still small number of water-soluble amphiphilic receptors and one of the first examples in which specific host-guest chemistry controls the size and shape of nanoscale aggregates.

Easy to Optimize: Dynamic Combinatorial Libraries of Metal−Dye Complexes as Flexible Sensors for Tripeptides

A dynamic combinatorial library (DCL) of dye complexes of Cu2+ and Ni2+ was used to sense the sequence isomeric tripeptides His-Gly-Gly, Gly-His-Gly, and Gly-Gly-His. The DCL sensor was obtained by mixing buffered aqueous solution of three commercially available dyes together with CuCl2 and NiCl2. The addition of the peptide analytes resulted in characteristic changes in the UV-vis spectrum of the mixture, which allowed the identification of the peptide. Due to the modular nature of the sensor, it was possible to optimize the sensor by variation of the amounts and ratio of its constituent building blocks. The composition of the best sensor was found to vary substantially, depending on the sensing problem to be addressed. Whereas a Cu2+/Ni2+ ratio of 1:3 gave the best differentiation for Gly-His-Gly and Gly-Gly-His, a sensor containing exclusively Cu2+ was found to provide the best discrimination between His-Gly-Gly and Gly-Gly-His.

Reinforced molecular recognition as an alternative to rigid receptors

In theory, a perfectly rigid receptor will probably be an unbeatable binder. However, rigidity may not be easy to achieve in practice and it is certainly not Nature's method to realise high affinity. In many proteins binding affinity is increased through non-covalent interactions within the protein. Thus there is a considerable incentive to follow Nature's example and start exploring the use of secondary intra-receptor interactions to aid in the binding process. Secondary interactions within a receptor will reinforce host-guest binding when the same conformational rearrangement (or freezing of motion) is required for guest binding as for the formation of the intra-receptor interactions. Introducing secondary interactions will require rather elaborate synthetic receptors to be produced. With the recent developments in dynamic combinatorial chemistry, access to the desired structures should be facilitated. Whether or not this approach will develop into a practical method remains to be established, but even if it does not, efforts along these lines will lead to a better understanding of the complex interplay between molecular recognition, folding and dynamics.

Supramolecular chemistry with organometallic half-sandwich complexes

Organometallic half-sandwich complexes of the late transition metals are versatile building blocks for supramolecular chemistry. They can be used to build metallamacrocyclic receptors and coordination cages, to study the adaptive behavior of dynamic combinatorial libraries and to generate indicator displacement assays for the detection of biologically interesting analytes such as peptides and aminoglycosides.

Highly diastereoselective amplification from a dynamic combinatorial library of macrocyclic oligoimines

Cadmium promoted diastereoselective amplification of a single member from a dynamic combinatorial library of stereoisomeric oligoimines of different sizes allows the efficient preparation of a new macrocyclic polyamine.