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Kurpik G, Walczak A, Gołdyn M, Harrowfield J, Stefankiewicz AR. Pd(II) Complexes with Pyridine Ligands: Substituent Effects on the NMR Data, Crystal Structures, and Catalytic Activity. Inorg Chem 2022; 61:14019-14029. [PMID: 35985051 PMCID: PMC9455277 DOI: 10.1021/acs.inorgchem.2c01996] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
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A wide range of functionalized pyridine ligands have
been employed
to synthesize a variety of Pd(II) complexes of the general formulas
[PdL4](NO3)2 and [PdL2Y2], where L = 4-X-py
and Y = Cl– or NO3–. Their structures have been unambiguously established via analytical
and spectroscopic methods in solution (NMR spectroscopy and mass spectrometry)
as well as in the solid state (X-ray diffraction). This in-depth characterization
has shown that the functionalization of ligand molecules with groups
of either electron-withdrawing or -donating nature (EWG and EDG) results
in significant changes in the physicochemical properties of the desired
coordination compounds. Downfield shifts of signals in the 1H NMR spectra were observed upon coordination within and across the
complex families, clearly indicating the relationship between NMR
chemical shifts and the ligand basicity as estimated from pKa values. A detailed crystallographic study
has revealed the operation of a variety of weak interactions, which
may be factors explaining aspects of the solution chemistry of the
complexes. The Pd(II) complexes have been found to be efficient and
versatile precatalysts in Suzuki–Miyaura and Heck cross-coupling
reactions within a scope of structurally distinct substrates, and
factors have been identified that have contributed to efficiency improvement
in both processes. A wide range
of pyridine derivatives have been employed
to synthesize a variety of di- and tetrasubstituted Pd(II) complexes
of square-planar geometry. This in-depth characterization has shown
that the functionalization of ligand molecules with groups of either
electron-withdrawing or -donating nature results in significant changes
in the physicochemical properties of the coordination compounds. Moreover,
the complexes have been found to be of practical utility as efficient
precatalysts for both Suzuki−Miyaura and Heck cross-coupling
reactions.
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Affiliation(s)
- Gracjan Kurpik
- Faculty of Chemistry, Adam Mickiewicz University in Poznań, Uniwersytetu Poznańskiego 8, Poznań 61-614, Poland.,Center for Advanced Technology, Adam Mickiewicz University in Poznań, Uniwersytetu Poznańskiego 10, Poznań 61-614, Poland
| | - Anna Walczak
- Faculty of Chemistry, Adam Mickiewicz University in Poznań, Uniwersytetu Poznańskiego 8, Poznań 61-614, Poland.,Center for Advanced Technology, Adam Mickiewicz University in Poznań, Uniwersytetu Poznańskiego 10, Poznań 61-614, Poland
| | - Mateusz Gołdyn
- Faculty of Chemistry, Adam Mickiewicz University in Poznań, Uniwersytetu Poznańskiego 8, Poznań 61-614, Poland
| | - Jack Harrowfield
- Institut de Science et d'Ingénierie Supramoléculaires, Université de Strasbourg, 8 allée Gaspard Monge, Strasbourg 67083, France
| | - Artur R Stefankiewicz
- Faculty of Chemistry, Adam Mickiewicz University in Poznań, Uniwersytetu Poznańskiego 8, Poznań 61-614, Poland.,Center for Advanced Technology, Adam Mickiewicz University in Poznań, Uniwersytetu Poznańskiego 10, Poznań 61-614, Poland
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Suma Y, Kang CS, Kim HS. Noncovalent and covalent immobilization of oxygenase on single-walled carbon nanotube for enzymatic decomposition of aromatic hydrocarbon intermediates. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2016; 23:1015-1024. [PMID: 25655752 DOI: 10.1007/s11356-015-4168-5] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2014] [Accepted: 01/22/2015] [Indexed: 06/04/2023]
Abstract
The decomposition of various aromatic hydrocarbon intermediates was examined using a recombinant oxidative enzyme immobilized on single-walled carbon nanotubes (SWCNTs). Hydroxyquinol 1,2-dioxygenase (CphA-I), which catalyzes ring cleavage of catechol and its analogues, was obtained from Arthrobacter chlorophenolicus A6 via cloning, overexpression, and subsequent purification. This recombinant enzyme was immobilized on SWCNTs by physical adsorption and covalent coupling in the absence and presence of N-hydroxysuccinimide. The immobilization yield was as high as 52.1%, and a high level of enzyme activity of up to 64.7% was preserved after immobilization. Kinetic analysis showed that the substrate utilization rates (vmax) and catalytic efficiencies (kcat/KM) of the immobilized enzyme for all substrates evaluated were similar to those of the free enzyme, indicating minimal loss of enzyme activity during immobilization. The immobilized enzyme was more stable toward extreme pH, temperature, and ionic strength conditions than the free enzyme. Thus, the oxidative enzyme immobilized on SWCNTs can be used as an effective and stable biocatalyst for the biochemical remediation process if further investigations would be carried out under field conditions.
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Affiliation(s)
- Yanasinee Suma
- Department of Advanced Technology Fusion, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul, 143-701, Korea
- Department of Environmental Engineering, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul, 143-701, Korea
| | - Christina S Kang
- Department of Environmental Engineering, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul, 143-701, Korea
| | - Han S Kim
- Department of Environmental Engineering, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul, 143-701, Korea.
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Chatterjee S, Paine TK. Oxygenative Aromatic Ring Cleavage of 2-Aminophenol with Dioxygen Catalyzed by a Nonheme Iron Complex: Catalytic Functional Model of 2-Aminophenol Dioxygenases. Inorg Chem 2015; 54:1720-7. [DOI: 10.1021/ic502658p] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Affiliation(s)
- Sayanti Chatterjee
- Department of Inorganic Chemistry, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Jadavpur, Kolkata 700032, India
| | - Tapan Kanti Paine
- Department of Inorganic Chemistry, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Jadavpur, Kolkata 700032, India
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Aerobic degradation of trichloroethylene by co-metabolism using phenol and gasoline as growth substrates. Int J Mol Sci 2014; 15:9134-48. [PMID: 24857922 PMCID: PMC4057779 DOI: 10.3390/ijms15059134] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2014] [Revised: 04/24/2014] [Accepted: 05/04/2014] [Indexed: 11/17/2022] Open
Abstract
Trichloroethylene (TCE) is a common groundwater contaminant of toxic and carcinogenic concern. Aerobic co-metabolic processes are the predominant pathways for TCE complete degradation. In this study, Pseudomonas fluorescens was studied as the active microorganism to degrade TCE under aerobic condition by co-metabolic degradation using phenol and gasoline as growth substrates. Operating conditions influencing TCE degradation efficiency were optimized. TCE co-metabolic degradation rate reached the maximum of 80% under the optimized conditions of degradation time of 3 days, initial OD600 of microorganism culture of 0.14 (1.26 × 107 cell/mL), initial phenol concentration of 100 mg/L, initial TCE concentration of 0.1 mg/L, pH of 6.0, and salinity of 0.1%. The modified transformation capacity and transformation yield were 20 μg (TCE)/mg (biomass) and 5.1 μg (TCE)/mg (phenol), respectively. Addition of nutrient broth promoted TCE degradation with phenol as growth substrate. It was revealed that catechol 1,2-dioxygenase played an important role in TCE co-metabolism. The dechlorination of TCE was complete, and less chlorinated products were not detected at the end of the experiment. TCE could also be co-metabolized in the presence of gasoline; however, the degradation rate was not high (28%). When phenol was introduced into the system of TCE and gasoline, TCE and gasoline could be removed at substantial rates (up to 59% and 69%, respectively). This study provides a promising approach for the removal of combined pollution of TCE and gasoline.
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Chatterjee S, Sheet D, Paine TK. Catalytic and regiospecific extradiol cleavage of catechol by a biomimetic iron complex. Chem Commun (Camb) 2013; 49:10251-3. [DOI: 10.1039/c3cc44124e] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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Zhang Q, Qu Y, Zhou J, Zhang X, Zhou H, Ma Q, Li X. Optimization of 2,3-dihydroxybiphenyl 1,2-dioxygenase expression and its application for biosensor. BIORESOURCE TECHNOLOGY 2011; 102:10553-10560. [PMID: 21924604 DOI: 10.1016/j.biortech.2011.08.071] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2011] [Revised: 07/14/2011] [Accepted: 08/17/2011] [Indexed: 05/31/2023]
Abstract
In this study, two statistical experimental designs, Plackett-Burman design (PBD) and response surface methodology (RSM), were employed to enhance the expression of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC_LA-4), which was subsequently used for the construction of catechol biosensor. Ten important factors were evaluated by PBD, and four significant parameters were then optimized by RSM. Under the favorable fermentation conditions, the maximal specific activity of BphC_LA-4 was about 0.58U/mg with catechol as substrate. Meanwhile, homology modeling and molecular docking were utilized to help understand the interaction between BphC_LA-4 and catecholic substrates, which illustrated that BphC_LA-4 presented lower binding affinity towards 4-methylcatechol in comparison with 3-methylcatechol and catechol. Interestingly, the BphC_LA-4 enzyme electrode prepared by SiO2 sol-gel showed good response to all these three catecholic compounds. The differences of selectivity to 4-methylcatechol between free and immobilized enzyme implied that the introduction of electro-catalysis might have an effect on the enzyme-catalysis process.
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Affiliation(s)
- Qiang Zhang
- State Key Laboratory of Fine Chemicals and Industrial Ecology and Environmental Engineering, Ministry of Education, School of Environmental Science and Technology, Dalian University of Technology, Dalian 116024, China
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Cho HJ, Kim K, Sohn SY, Cho HY, Kim KJ, Kim MH, Kim D, Kim E, Kang BS. Substrate binding mechanism of a type I extradiol dioxygenase. J Biol Chem 2010; 285:34643-52. [PMID: 20810655 DOI: 10.1074/jbc.m110.130310] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
A meta-cleavage pathway for the aerobic degradation of aromatic hydrocarbons is catalyzed by extradiol dioxygenases via a two-step mechanism: catechol substrate binding and dioxygen incorporation. The binding of substrate triggers the release of water, thereby opening a coordination site for molecular oxygen. The crystal structures of AkbC, a type I extradiol dioxygenase, and the enzyme substrate (3-methylcatechol) complex revealed the substrate binding process of extradiol dioxygenase. AkbC is composed of an N-domain and an active C-domain, which contains iron coordinated by a 2-His-1-carboxylate facial triad motif. The C-domain includes a β-hairpin structure and a C-terminal tail. In substrate-bound AkbC, 3-methylcatechol interacts with the iron via a single hydroxyl group, which represents an intermediate stage in the substrate binding process. Structure-based mutagenesis revealed that the C-terminal tail and β-hairpin form part of the substrate binding pocket that is responsible for substrate specificity by blocking substrate entry. Once a substrate enters the active site, these structural elements also play a role in the correct positioning of the substrate. Based on the results presented here, a putative substrate binding mechanism is proposed.
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Affiliation(s)
- Hyo Je Cho
- From the School of Life Science and Biotechnology, Kyungpook National University, Daegu 702-701, Korea
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