Differential response for multiple ions: a smart probe to construct optically tunable molecular logic systems

A rhodamine-based optical probe has been designed through a one-pot synthetic protocol involving phenanthroline as a binding motif. The compound showed a bright pink coloration specifically upon the addition of Cu²⁺ and Hg²⁺ ions. However, the appearance of bright red fluorescence was observed only in the presence of Hg²⁺. Considering both, we can detect and discriminate these two ions even at ppb level concentration. Furthermore, these in situ generated metal complexes were utilized for the selective recognition of CN^- and I^- ions. Pre-coated TLC plates were developed for rapid on-site detection of these toxic ions even in remote places. Finally, on a single molecular probe based on differential opto-chemical interactions with different ions (Cu²⁺, Hg²⁺, CN^- and I^-), we were able to design numerous trivial (OR, NOR) and non-trivial (INHIBIT, IMPLICATION, COMPLEMENT, TRANSFER, NOT-TRANSFER) logic gates. Most fascinatingly, we can switch the logic response from one type to another by simply tuning only the optical output channel.

An ultra-low detection limit gold(III) probe based on rhodamine-covalent hydrogel sensor

A highly sensitive and selective optical chemosensor (Arg-Rhoen) for determination of Au³⁺ was prepared by covalent immobilization of rhodamine ethylenediamine on agarose gel. Spectrophotometric studies of complex formation, chemical structures and purity of the hydrogel sensor were carried out using TGA, NMR, TEM, and IR. The complexation study results indicated that this probe can selectively detect Au³⁺ via a metal ion chelation-induced ring-opening reaction, and then caused a remarkable colour change from colourless to pink and a strong fluorescence enhancement. Theoretical DFT calculation results suggested that the hydrogel sensor Arg-Rhoen formed stable complexes with Au³⁺ through a large number of cation-dipole interactions. Reusability has been established by repeatedly dipping and rinsing the hydrogel in aqueous Au³⁺ and EDTA in basic solutions. We believe that this approach may provide an easily measurable and inherently sensitive method for Au³⁺ detection in environmental and biological applications.

A flexible tripod fluorescent probe for multiple cations detection and its application in living cells

To the flexible tripod platform tren (tris(2-aminoethyl)amine), a Rhodamine and two naphthalene fluorophores were introduced. The resulting fluorescence probe named TRN was fully characterized and employed in cell imaging. Probe TRN exhibited high selectivity and excellent sensitivity for the simultaneous fluorescence detection of Zn²⁺/Hg²⁺/Al³⁺/Cu²⁺. The significant changes in the fluorescence color make naked-eye detection possible. Furthermore, fluorescence imaging experiments of Zn²⁺/Hg²⁺/Al³⁺/Cu²⁺ in living PC3 cells demonstrated its value for practical applications in biological systems.

Triazole derived azo-azomethine dye as a new colorimetric anion chemosensor

In the pursue of developing anion sensors, an efficient triazole derived azo-azomethine dye chemosensor (S) that differentially senses F‾ and AcO‾ ions has been reported. The ions recognition ability of S was investigated by colorimetric and UV-visible spectroscopic methods. Interestingly, this chemosensor molecule is virtually inactive in presence of other anions such as Cl‾, Br‾ and I‾ and HSO₄‾. We have further presented a ratiometric approach to differentiate F‾ and AcO‾ ions. The reversibility of F‾ ion binding with S was established by the addition of Ca(NO₃)₂ to the fluoride bound S, which led to the regeneration of S. The quantum chemical calculation of energies of unbound and bound S has been employed using Density Functional Theory (DFT) to understand the interaction between chemosensor and anions. Evidence in support of fluoride-induced deprotonation of a O-H bond during the detection of F⁻ ion has been demonstrated by employing ¹H NMR titration experiments.

Macrocycles as Ion Pair Receptors

Cation and anion recognition have both played central roles in the development of supramolecular chemistry. Much of the associated research has focused on the development of receptors for individual cations or anions, as well as their applications in different areas. Rarely is complexation of the counterions considered. In contrast, ion pair recognition chemistry, emerging from cation and anion coordination chemistry, is a specific research field where co-complexation of both anions and cations, so-called ion pairs, is the center of focus. Systems used for the purpose, known as ion pair receptors, are typically di- or polytopic hosts that contain recognition sites for both cations and anions and which permit the concurrent binding of multiple ions. The field of ion pair recognition has blossomed during the past decades. Several smaller reviews on the topic were published roughly 5 years ago. They provided a summary of synthetic progress and detailed the various limiting ion recognition modes displayed by both acyclic and macrocyclic ion pair receptors known at the time. The present review is designed to provide a comprehensive and up-to-date overview of the chemistry of macrocycle-based ion pair receptors. We specifically focus on the relationship between structure and ion pair recognition, as well as applications of ion pair receptors in sensor development, cation and anion extraction, ion transport, and logic gate construction.

A Highly Selective "Turn-on" Fluorescent Probe for Detection of Fe3+ in Cells

A new "turn-on" fluorescent probe Py based on rhodamine and piperonaldehyde was designed and synthesized for detecting Fe³⁺ in cells. The free probe Py was non-fluorescent. While only upon addition of Fe³⁺, the significant increase of the fluorescence and color were observed which could be visible directly by "naked-eye". The probe Py shows high selectivity and sensitivity for Fe³⁺ over other common metal ions in EtOH-H₂O (3/2, v/v) mixed solution. The association constant and the detection limit were calculated to be 4.81 × 10⁴ M^-1 and 1.18 × 10^-8 mol/L respectively. The introduction of piperonaldehyde unit could increase probe rigidity which could enhance its optical properties. Meanwhile, the binding mode between Py and Fe³⁺ was found to be a 1:1 complex formation. The density functional theory (DFT) calculations were performed which would further confirm the recognition mechanism between probe Py and Fe³⁺. In addition, the probe has been proved to be reversible for detecting Fe³⁺. Moreover, the probe Py was used to detect Fe³⁺ in cells successfully.

Design and Investigation of Optical Properties of N-(Rhodamine-B)-Lactam-Ethylenediamine (RhB-EDA) Fluorescent Probe

This study presents chemical modification of a Rhodamine B (RhB) sensor probe by ethylenediamine (EDA), and investigation of its spectral as well as sensor properties to the various metals. The synthesised N-(Rhodamine-B)-lactam-ethylenediamine (RhB-EDA) fluorescent probe shows interesting optical sensor properties, and high sensitivity and selectivity to Ag⁺ ions among all the tested metal ions (K⁺, Mg2+, Cu2+, Ni2+, Fe2+, Pb2+, Na⁺, Mn2+, Li⁺, Al3+, Co2+, Hg2+, Sr2+, Ca2+, Ag⁺, Cd2+ and Zn2+), while the well-known Rhodamine B (RhB) fluorescent probe shows much less sensitivity to Ag⁺ ions, but high sensitivity to Fe2+ ions. The novel fluorescent sensor probe RhB-EDA has the capabilities to sense Ag⁺ ions up to µM ranges by using the fluorescence quenching approach. The probe displayed a dynamic response to Ag⁺ in the range of 0.43 × 10-3-10-6 M with a detection limit of 0.1 μM. The sensing system of an RhB-EDA novel fluorescent probe was optimised according to the spectral properties, effect of pH and buffer, photostability, incubation time, sensitivity, and selectivity. Since all the spectral and sensing properties were tested in green aqueous media, although many other similar sensor systems rely on organic solvent solutions, the RhB-EDA sensing probe may be a good candidate for measuring Ag⁺ ions in real-life applications.

A Single Crystal with Multiple Functions of Optical Waveguide, Aggregation-Induced Emission, and Mechanochromism

A novel single crystal, PyB, is produced in a high yield by the simple method of connecting a pyrene unit and a rhodamine B moiety together. PyB shows multiple functions of aggregation-induced emission, low-loss optical waveguiding, and tricolored mechanochromism. The crucial point for fabricating such a multifunctional single crystal is selecting the C═N group as a spacer, which simplifies the synthetic procedure, confines the molecular conformation to develop single crystals, and allows one to dynamically observe the color variation in situ and quantitatively analyze the effect of applied pressures. Such a simple approach may be extended to other fluorophores, thus providing a new opportunity for the real world application of mechanochromic materials for mechanical sensors, optical encoding, and optoelectronic devices, etc.

Environmentally Robust Rhodamine Reporters for Probe-based Cellular Detection of the Cancer-linked Oxidoreductase hNQO1

We successfully synthesized a fluorescent probe capable of detecting the cancer-associated

NAD(P)H

quinoneoxidoreductase isozyme-1 within human cells, based on results from an investigation of the stability of various rhodamines and seminaphthorhodamines toward the biological reductant NADH, present at ∼100-200 μM within cells. While rhodamines are generally known for their chemical stability, we observe that NADH causes significant and sometimes rapid modification of numerous rhodamine analogues, including those oftentimes used in imaging applications. Results from mechanistic studies lead us to rule out a radical-based reduction pathway, suggesting rhodamine reduction by NADH proceeds by a hydride transfer process to yield the reduced leuco form of the rhodamine and oxidized NAD(+). A relationship between the structural features of the rhodamines and their reactivity with NADH is observed. Rhodamines with increased alkylation on the N3- and N6-nitrogens, as well as the xanthene core, react the least with NADH; whereas, nonalkylated variants or analogues with electron-withdrawing substituents have the fastest rates of reaction. These outcomes allowed us to judiciously construct a seminaphthorhodamine-based, turn-on fluorescent probe that is capable of selectively detecting the cancer-associated, NADH-dependent enzyme

NAD(P)H

quinoneoxidoreductase isozyme-1 in human cancer cells, without the issue of NADH-induced deactivation of the seminaphthorhodamine reporter.

Dipicolylamine coupled rhodamine dyes: new clefts for highly selective naked eye sensing of Cu2+and CN−ions

The dipicolylamine (DPA) motif has been utilized in devising rhodamine labeled compounds1and2for Cu²⁺ions.

A simple highly sensitive and selective TURN-ON fluorescent chemosensor for the detection of cadmium ions in physiological conditions

A very simple fluorophore was synthesized and applied as a chemosensor for Cd²⁺ion detection.

Benzodithieno-imidazole based π-conjugated fluorescent polymer probe for selective sensing of Cu2+

A benzodithieno-imidazole based π-conjugated fluorescent polymer probe shows excellent selectivity towards Cu²⁺ions through fluorescence quenching.

Rhodamine appended hexaphenylbenzene derivative: through bond energy transfer for sensing of picric acid

A rhodamine appended hexaphenylbenzene based derivative 5 has been designed and synthesized, which displays through bond energy transfer in the presence of picric acid in MeOH and serves as a "turn on" sensor for picric acid.

Unusual red shift of the sensor while detecting the presence of Cd2+ in aqueous environment

A norbornene derived 8-hydroxyquinoline (N8HQ) is designed and synthesized. A "turn-on" ratiometric fluorescent response is observed for Cd(2+) in aqueous solution upon binding with N8HQ with a characteristic huge red shift of 164 nm. A lowest detection limit of 1.6 nM of Cd(2+) is achieved in the presence of other heavy metals.

Chromogenic and fluorogenic chemosensors and reagents for anions. A comprehensive review of the years 2010-2011

This review focuses on examples reported in the years 2010-2011 dealing with the design of chromogenic and fluorogenic chemosensors or reagents for anions.

A native-chemical-ligation-mechanism-based ratiometric fluorescent probe for aminothiols

Thiol-containing amino acids (aminothiols) such as cysteine (Cys) and homocysteine (Hcy) play a key role in various biological processes including maintaining the homeostasis of biological thiols. However, abnormal levels of aminothiols are associated with a variety of diseases. The native chemical ligation (NCL) reaction has attracted great attention in the fields of chemistry and biology. NCL of peptide segments involves cascade reactions between a peptide-α-thioester and an N-terminal cysteine peptide. In this work, we employed the NCL reaction mechanism to formulate a Förster resonance energy transfer (FRET) strategy for the design of ratiometric fluorescent probes that were selective toward aminothiols. On the basis of this new strategy, the ratiometric fluorescent probe 1 for aminothiols was judiciously designed. The new probe is highly selective toward aminothiols over other thiols and exhibits a very large variation (up to 160-fold) in its fluorescence ratio (I(458)/I(603)). The new fluorescent probe is capable of ratiometric detection of aminothiols in newborn calf and human serum samples and is also suitable for ratiometric fluorescent imaging of aminothiols in living cells.