1
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Wang T, Jimmidi R, Roubinet B, Landemarre L, Vincent SP. Glycofullerene-AuNPs as multivalent ligands of DC-SIGN and bacterial lectin FimH: tuning nanoparticle size and ligand density. NANOSCALE 2023. [PMID: 37378654 DOI: 10.1039/d3nr01611k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/29/2023]
Abstract
Glycoclusters have been extensively investigated for their inhibition of multivalent carbohydrate-protein interactions, which is often the first step for bacterial and viral pathogens to selectively bind their host cells. Glycoclusters may thus prevent infections by blocking the microbe attachment onto the host cell surface. The potency of multivalent carbohydrate-protein interactions is largely derived from the spatial arrangement of the ligand and the nature and flexibility of the linker. The size of the glycocluster may also have a dramatic impact on the multivalent effect. The main objective of this study is to provide a systematic comparison of gold nanoparticles of three representative sizes and ligand densities at their surface. Therefore, AuNPs with diameters of 20, 60, and 100 nm were coupled either to a monomeric D-mannoside or a decameric glycofullerene. Lectin DC-SIGN and lectin FimH were selected as representative models of viral and bacterial infections, respectively. We also report the synthesis of a hetero-cluster built from 20 nm AuNPs and a mannose-derived glycofullerene and monomeric fucosides. All final glycoAuNPs were evaluated as ligands of DC-SIGN- and FimH using the GlycoDiag LectProfile technology. This investigation revealed that the 20 nm AuNPs bearing glycofullerenes with short linker are the most potent binders of both DC-SIGN and FimH. Moreover, the hetero-glycoAuNPs showed an enhanced selectivity and inhibitory ability towards DC-SIGN. Hemagglutination inhibition assays using uropathogenic E. coli corroborated the in vitro assays. Overall, these results showed smaller glycofullerene-AuNPs (20 nm) exhibited the best potential as anti-adhesive materials for a variety of bacterial and viral pathogens.
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Affiliation(s)
- Tao Wang
- University of Namur (UNamur, Institut Narilis), Laboratoire de Chimie Bio-Organique, rue de Bruxelles 61, B-5000 Namur, Belgium.
| | - Ravikumar Jimmidi
- University of Namur (UNamur, Institut Narilis), Laboratoire de Chimie Bio-Organique, rue de Bruxelles 61, B-5000 Namur, Belgium.
| | | | | | - Stéphane P Vincent
- University of Namur (UNamur, Institut Narilis), Laboratoire de Chimie Bio-Organique, rue de Bruxelles 61, B-5000 Namur, Belgium.
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2
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Ramos-Soriano J, Ghirardello M, Galan MC. Carbon-based glyco-nanoplatforms: towards the next generation of glycan-based multivalent probes. Chem Soc Rev 2022; 51:9960-9985. [PMID: 36416290 PMCID: PMC9743786 DOI: 10.1039/d2cs00741j] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2022] [Indexed: 11/24/2022]
Abstract
Cell surface carbohydrates mediate a wide range of carbohydrate-protein interactions key to healthy and disease mechanisms. Many of such interactions are multivalent in nature and in order to study these processes at a molecular level, many glycan-presenting platforms have been developed over the years. Among those, carbon nanoforms such as graphene and their derivatives, carbon nanotubes, carbon dots and fullerenes, have become very attractive as biocompatible platforms that can mimic the multivalent presentation of biologically relevant glycosides. The most recent examples of carbon-based nanoplatforms and their applications developed over the last few years to study carbohydrate-mediate interactions in the context of cancer, bacterial and viral infections, among others, are highlighted in this review.
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Affiliation(s)
- Javier Ramos-Soriano
- School of Chemistry, University of Bristol, Cantock's Close, Bristol BS8 1TS, UK.
- Glycosystems Laboratory, Instituto de Investigaciones Químicas (IIQ), CSIC and Universidad de Sevilla, Américo Vespucio, 49, 41092 Sevilla, Spain.
| | - Mattia Ghirardello
- School of Chemistry, University of Bristol, Cantock's Close, Bristol BS8 1TS, UK.
- Departamento de Química, Universidad de La Rioja, Calle Madre de Dios 53, 26006 Logroño, Spain.
| | - M Carmen Galan
- School of Chemistry, University of Bristol, Cantock's Close, Bristol BS8 1TS, UK.
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3
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Rim-differentiation vs. mixture of constitutional isomers: A binding study between pillar[5]arene-based glycoclusters and lectins from pathogenic bacteria. CHINESE CHEM LETT 2022. [DOI: 10.1016/j.cclet.2022.107872] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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4
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Wojtczak K, Byrne JP. Structural Considerations for Building Synthetic Glycoconjugates as Inhibitors for Pseudomonas aeruginosa Lectins. ChemMedChem 2022; 17:e202200081. [PMID: 35426976 PMCID: PMC9321714 DOI: 10.1002/cmdc.202200081] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2022] [Revised: 04/13/2022] [Indexed: 11/16/2022]
Abstract
Pseudomonas aeruginosa is a pathogenic bacterium, responsible for a large portion of nosocomial infections globally and designated as critical priority by the World Health Organisation. Its characteristic carbohydrate-binding proteins LecA and LecB, which play a role in biofilm-formation and lung-infection, can be targeted by glycoconjugates. Here we review the wide range of inhibitors for these proteins (136 references), highlighting structural features and which impact binding affinity and/or therapeutic effects, including carbohydrate selection; linker length and rigidity; and scaffold topology, particularly for multivalent candidates. We also discuss emerging therapeutic strategies, which build on targeting of LecA and LecB, such as anti-biofilm activity, anti-adhesion and drug-delivery, with promising prospects for medicinal chemistry.
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Affiliation(s)
- Karolina Wojtczak
- School of Biological and Chemical SciencesNational University of Ireland GalwayUniversity RoadGalwayIreland
| | - Joseph P. Byrne
- School of Biological and Chemical SciencesNational University of Ireland GalwayUniversity RoadGalwayIreland
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5
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Vincent SP, Chen W. Copillar[5]arene Chemistry: Synthesis and Applications. SYNTHESIS-STUTTGART 2022. [DOI: 10.1055/s-0040-1738369] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
AbstractResearch on pillar[n]arenes has witnessed a very quick expansion. This emerging class of functionalized macrocyclic oligoarenes not only offers host–guest properties due to the presence of the central cavity, but also presents a wide variety of covalent functionalization possibilities. This short review focuses on copillararenes, a subfamily of pillar[n]arenes. In copillararenes, at least one of the hydroquinone units bears different functional groups compared to the others. After having defined the particular features of copillararenes, this short review compares the different synthetic strategies allowing their construction. Some key applications and future perspectives are also described. 1 Introduction2 General Features of Pillar[5]arenes3 Synthesis of Functionalized Copillar[4+1]arenes4 Concluding Remarks
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Affiliation(s)
| | - Wenzhang Chen
- Guizhou Provincial Engineering Technology Research Center for Chemical Drug R&D, Guizhou Medical University
- Department of Chemistry, UNamur, NARILIS
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6
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Nishida T, Yokoyama R, Kubohira Y, Maeda Y, Takeo T, Nakagata N, Takagi H, Ishikura K, Yanagihara K, Misumi S, Kishimoto N, Ishitsuka Y, Kondo Y, Irie T, Soga M, Era T, Onodera R, Higashi T, Motoyama K. Lactose-Appended Hydroxypropyl-β-Cyclodextrin Lowers Cholesterol Accumulation and Alleviates Motor Dysfunction in Niemann-Pick Type C Disease Model Mice. ACS APPLIED BIO MATERIALS 2022; 5:2377-2388. [PMID: 35506864 DOI: 10.1021/acsabm.2c00233] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Niemann-Pick disease type C (NPC) is characterized by the accumulation of glycolipids such as free cholesterol, sphingomyelin, and gangliosides in late endosomes/lysosomes (endolysosomes) due to abnormalities in the membrane proteins NPC1 or NPC2. The main symptoms of NPC caused by free cholesterol accumulation in various tissues vary depending on the time of onset, but hepatosplenomegaly and neurological symptoms accompanied by decreased motor, cognitive, and mental functions are observed in all age groups. However, the efficacy of NPC treatment remains limited. Herein, we have fabricated lactose-appended hydroxypropyl-β-cyclodextrin (Lac-HPβCD) and evaluated its lowering effects on cholesterol accumulation in NPC model mice. We reveal that Lac-HPβCD lowers cholesterol accumulation in the liver and spleen by reducing the amount of free cholesterol. Moreover, Lac-HPβCD reduces the amount of free cholesterol in the cerebrum and slightly alleviates motor dysfunction. These results suggest that Lac-HPβCD has potential for the treatment of NPC.
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Affiliation(s)
- Takumi Nishida
- Graduate School of Pharmaceutical Sciences, Kumamoto University, 5-1 Oe-honmachi, Chuo-ku, Kumamoto 862-0973, Japan
| | - Ryoma Yokoyama
- Graduate School of Pharmaceutical Sciences, Kumamoto University, 5-1 Oe-honmachi, Chuo-ku, Kumamoto 862-0973, Japan
| | - Yuto Kubohira
- Graduate School of Pharmaceutical Sciences, Kumamoto University, 5-1 Oe-honmachi, Chuo-ku, Kumamoto 862-0973, Japan
| | - Yuki Maeda
- Graduate School of Pharmaceutical Sciences, Kumamoto University, 5-1 Oe-honmachi, Chuo-ku, Kumamoto 862-0973, Japan.,Program for Leading Graduate Schools "HIGO (Health life science: Interdisciplinary and Glocal Oriented) Program", Kumamoto University, 5-1 Oe-honmachi, Chuo-ku, Kumamoto 862-0973, Japan
| | - Toru Takeo
- Center for Animal Resources and Development (CARD), Kumamoto University, 2-2-1 Honjo, Chuo-ku, Kumamoto 860-0811, Japan
| | - Naomi Nakagata
- Center for Animal Resources and Development (CARD), Kumamoto University, 2-2-1 Honjo, Chuo-ku, Kumamoto 860-0811, Japan
| | - Hiroki Takagi
- Research Institute of Nihon Shokuhin Kako Co., Ltd., 30 Tajima, Fuji 417-8530, Shizuoka, Japan
| | - Kandai Ishikura
- Research Institute of Nihon Shokuhin Kako Co., Ltd., 30 Tajima, Fuji 417-8530, Shizuoka, Japan
| | - Kazunori Yanagihara
- Research Institute of Nihon Shokuhin Kako Co., Ltd., 30 Tajima, Fuji 417-8530, Shizuoka, Japan
| | - Shogo Misumi
- Graduate School of Pharmaceutical Sciences, Kumamoto University, 5-1 Oe-honmachi, Chuo-ku, Kumamoto 862-0973, Japan
| | - Naoki Kishimoto
- Graduate School of Pharmaceutical Sciences, Kumamoto University, 5-1 Oe-honmachi, Chuo-ku, Kumamoto 862-0973, Japan
| | - Yoichi Ishitsuka
- Graduate School of Pharmaceutical Sciences, Kumamoto University, 5-1 Oe-honmachi, Chuo-ku, Kumamoto 862-0973, Japan
| | - Yuki Kondo
- Graduate School of Pharmaceutical Sciences, Kumamoto University, 5-1 Oe-honmachi, Chuo-ku, Kumamoto 862-0973, Japan
| | - Tetsumi Irie
- Graduate School of Pharmaceutical Sciences, Kumamoto University, 5-1 Oe-honmachi, Chuo-ku, Kumamoto 862-0973, Japan.,Program for Leading Graduate Schools "HIGO (Health life science: Interdisciplinary and Glocal Oriented) Program", Kumamoto University, 5-1 Oe-honmachi, Chuo-ku, Kumamoto 862-0973, Japan
| | - Minami Soga
- Department of Cell Modulation, Institute of Molecular Embryology and Genetics, Kumamoto University, 2-2-1 Honjo, Chuo-ku, Kumamoto 860-0811, Japan
| | - Takumi Era
- Department of Cell Modulation, Institute of Molecular Embryology and Genetics, Kumamoto University, 2-2-1 Honjo, Chuo-ku, Kumamoto 860-0811, Japan
| | - Risako Onodera
- Graduate School of Pharmaceutical Sciences, Kumamoto University, 5-1 Oe-honmachi, Chuo-ku, Kumamoto 862-0973, Japan
| | - Taishi Higashi
- Graduate School of Pharmaceutical Sciences, Kumamoto University, 5-1 Oe-honmachi, Chuo-ku, Kumamoto 862-0973, Japan.,Priority Organization for Innovation and Excellence, Kumamoto University, 5-1 Oe-honmachi, Chuo-ku, Kumamoto 862-0973, Japan
| | - Keiichi Motoyama
- Graduate School of Pharmaceutical Sciences, Kumamoto University, 5-1 Oe-honmachi, Chuo-ku, Kumamoto 862-0973, Japan
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7
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Tanzi L, Terreni M, Zhang Y. Synthesis and biological application of glyco- and peptide derivatives of fullerene C60. Eur J Med Chem 2022; 230:114104. [DOI: 10.1016/j.ejmech.2022.114104] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2021] [Revised: 01/06/2022] [Accepted: 01/06/2022] [Indexed: 01/02/2023]
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8
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Mohy El Dine T, Jimmidi R, Diaconu A, Fransolet M, Michiels C, De Winter J, Gillon E, Imberty A, Coenye T, Vincent SP. Pillar[5]arene-Based Polycationic Glyco[2]rotaxanes Designed as Pseudomonas aeruginosa Antibiofilm Agents. J Med Chem 2021; 64:14728-14744. [PMID: 34542288 DOI: 10.1021/acs.jmedchem.1c01241] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
Pseudomonas aeruginosa (P.A.) is a human pathogen belonging to the top priorities for the discovery of new therapeutic solutions. Its propensity to generate biofilms strongly complicates the treatments required to cure P.A. infections. Herein, we describe the synthesis of a series of novel rotaxanes composed of a central galactosylated pillar[5]arene, a tetrafucosylated dendron, and a tetraguanidinium subunit. Besides the high affinity of the final glycorotaxanes for the two P.A. lectins LecA and LecB, potent inhibition levels of biofilm growth were evidenced, showing that their three subunits work synergistically. An antibiofilm assay using a double ΔlecAΔlecB mutant compared to the wild type demonstrated that the antibiofilm activity of the best glycorotaxane is lectin-mediated. Such antibiofilm potency had rarely been reached in the literature. Importantly, none of the final rotaxanes was bactericidal, showing that their antibiofilm activity does not depend on bacteria killing, which is a rare feature for antibiofilm agents.
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Affiliation(s)
- Tharwat Mohy El Dine
- Department of Chemistry, Laboratory of Bio-Organic Chemistry - NAmur Research Institute for LIfe Sciences (NARILIS), University of Namur (UNamur), Rue de Bruxelles 61, 5000 Namur, Belgium
| | - Ravikumar Jimmidi
- Department of Chemistry, Laboratory of Bio-Organic Chemistry - NAmur Research Institute for LIfe Sciences (NARILIS), University of Namur (UNamur), Rue de Bruxelles 61, 5000 Namur, Belgium
| | - Andrei Diaconu
- Department of Chemistry, Laboratory of Bio-Organic Chemistry - NAmur Research Institute for LIfe Sciences (NARILIS), University of Namur (UNamur), Rue de Bruxelles 61, 5000 Namur, Belgium.,Center of Advanced Research in Bionanoconjugates and Biopolymers "Petru Poni", Institute of Macromolecular Chemistry of Romanian Academy, 41A, Aleea Gr. Ghica Voda, 700487 Iasi, Romania
| | - Maude Fransolet
- Department of Chemistry, Laboratory of Bio-Organic Chemistry - NAmur Research Institute for LIfe Sciences (NARILIS), University of Namur (UNamur), Rue de Bruxelles 61, 5000 Namur, Belgium
| | - Carine Michiels
- Department of Chemistry, Laboratory of Bio-Organic Chemistry - NAmur Research Institute for LIfe Sciences (NARILIS), University of Namur (UNamur), Rue de Bruxelles 61, 5000 Namur, Belgium
| | - Julien De Winter
- Department of Chemistry, Laboratory of Organic Synthesis and Mass Spectrometry, University of Mons (Umons), 20 place du parc, 7000 Mons, Belgium
| | - Emilie Gillon
- Centre de recherches sur les macromolécules végétales (CERMAV), University of Genoble Alpes, CNRS, 601 rue de la chimie, 38000 Grenoble, France
| | - Anne Imberty
- Centre de recherches sur les macromolécules végétales (CERMAV), University of Genoble Alpes, CNRS, 601 rue de la chimie, 38000 Grenoble, France
| | - Tom Coenye
- Laboratory of Pharmaceutical Microbiology, University of Ghent (UGent), Ottergemsesteenweg 460, 9000 Gent, Belgium
| | - Stéphane P Vincent
- Department of Chemistry, Laboratory of Bio-Organic Chemistry - NAmur Research Institute for LIfe Sciences (NARILIS), University of Namur (UNamur), Rue de Bruxelles 61, 5000 Namur, Belgium
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9
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Al-Mughaid H, Khazaaleh M. α-d-Mannoside ligands with a valency ranging from one to three: Synthesis and hemagglutination inhibitory properties. Carbohydr Res 2021; 508:108396. [PMID: 34298357 DOI: 10.1016/j.carres.2021.108396] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2021] [Revised: 06/29/2021] [Accepted: 07/06/2021] [Indexed: 11/28/2022]
Abstract
Six mono-, di-, and trivalent α-d-mannopyranosyl conjugates built on aromatic scaffolds were synthesized in excellent yields by Cu(I) catalyzed azide-alkyne cycloaddition reaction (CuAAC). These conjugates were designed to have unique, flexible tails that combine a mid-tail triazole ring, to interact with the tyrosine gate, with a terminal phenyl group armed with benzylic hydroxyl groups to avoid solubility problems as well as to provide options to connect to other supports. Biological evaluation of the prepared conjugates in hemagglutination inhibition (HAI) assay revealed that potency increases with valency and the trivalent ligand 6d (HAI = 0.005 mM) is approximately sevenfold better than the best meta-oriented monovalent analogues 2d and 4d (HAI ≈ 0.033 mM) and so may serve as a good starting point to find new lead ligands.
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Affiliation(s)
- Hussein Al-Mughaid
- Department of Chemistry, Jordan University of Science and Technology, PO Box 3030, Irbid 22110, Jordan.
| | - Maha Khazaaleh
- Department of Chemistry, Jordan University of Science and Technology, PO Box 3030, Irbid 22110, Jordan
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10
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Abstract
Carbohydrates are the most abundant and one of the most important biomacromolecules in Nature. Except for energy-related compounds, carbohydrates can be roughly divided into two categories: Carbohydrates as matter and carbohydrates as information. As matter, carbohydrates are abundantly present in the extracellular matrix of animals and cell walls of various plants, bacteria, fungi, etc., serving as scaffolds. Some commonly found polysaccharides are featured as biocompatible materials with controllable rigidity and functionality, forming polymeric biomaterials which are widely used in drug delivery, tissue engineering, etc. As information, carbohydrates are usually referred to the glycans from glycoproteins, glycolipids, and proteoglycans, which bind to proteins or other carbohydrates, thereby meditating the cell-cell and cell-matrix interactions. These glycans could be simplified as synthetic glycopolymers, glycolipids, and glycoproteins, which could be afforded through polymerization, multistep synthesis, or a semisynthetic strategy. The information role of carbohydrates can be demonstrated not only as targeting reagents but also as immune antigens and adjuvants. The latter are also included in this review as they are always in a macromolecular formulation. In this review, we intend to provide a relatively comprehensive summary of carbohydrate-based macromolecular biomaterials since 2010 while emphasizing the fundamental understanding to guide the rational design of biomaterials. Carbohydrate-based macromolecules on the basis of their resources and chemical structures will be discussed, including naturally occurring polysaccharides, naturally derived synthetic polysaccharides, glycopolymers/glycodendrimers, supramolecular glycopolymers, and synthetic glycolipids/glycoproteins. Multiscale structure-function relationships in several major application areas, including delivery systems, tissue engineering, and immunology, will be detailed. We hope this review will provide valuable information for the development of carbohydrate-based macromolecular biomaterials and build a bridge between the carbohydrates as matter and the carbohydrates as information to promote new biomaterial design in the near future.
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Affiliation(s)
- Lu Su
- The State Key Laboratory of Molecular Engineering of Polymers and Department of Macromolecular Science, Fudan University, Shanghai 200433, China.,Institute for Complex Molecular Systems, Laboratory of Macromolecular and Organic Chemistry, Eindhoven University of Technology, Eindhoven 5600, The Netherlands
| | - Yingle Feng
- The State Key Laboratory of Molecular Engineering of Polymers and Department of Macromolecular Science, Fudan University, Shanghai 200433, China.,Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education and School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, Shaanxi 710119, P. R. China
| | - Kongchang Wei
- Empa, Swiss Federal Laboratories for Materials Science and Technology, Department of Materials meet Life, Laboratory for Biomimetic Membranes and Textiles, Lerchenfeldstrasse 5, St. Gallen 9014, Switzerland
| | - Xuyang Xu
- The State Key Laboratory of Molecular Engineering of Polymers and Department of Macromolecular Science, Fudan University, Shanghai 200433, China
| | - Rongying Liu
- The State Key Laboratory of Molecular Engineering of Polymers and Department of Macromolecular Science, Fudan University, Shanghai 200433, China
| | - Guosong Chen
- The State Key Laboratory of Molecular Engineering of Polymers and Department of Macromolecular Science, Fudan University, Shanghai 200433, China.,Multiscale Research Institute of Complex Systems, Fudan University, Shanghai 200433, China
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11
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Meichsner E, Schillinger F, Trinh TMN, Guerra S, Hahn U, Nierengarten I, Holler M, Nierengarten J. Regioselective Synthesis of Fullerene Tris‐adducts for the Preparation of Clickable Fullerene [3:3]‐Hexa‐adduct Scaffolds. European J Org Chem 2021. [DOI: 10.1002/ejoc.202100572] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Eric Meichsner
- Laboratoire de Chimie des Matériaux Moléculaires Université de Strasbourg et CNRS (UMR 7042 LIMA) Ecole Européenne de Chimie, Polymères et Matériaux 25 rue Becquerel 67087 Strasbourg Cedex 2 France
| | - Franck Schillinger
- Laboratoire de Chimie des Matériaux Moléculaires Université de Strasbourg et CNRS (UMR 7042 LIMA) Ecole Européenne de Chimie, Polymères et Matériaux 25 rue Becquerel 67087 Strasbourg Cedex 2 France
| | - Thi Minh Nguyet Trinh
- Laboratoire de Chimie des Matériaux Moléculaires Université de Strasbourg et CNRS (UMR 7042 LIMA) Ecole Européenne de Chimie, Polymères et Matériaux 25 rue Becquerel 67087 Strasbourg Cedex 2 France
| | - Sebastiano Guerra
- Laboratoire de Chimie des Matériaux Moléculaires Université de Strasbourg et CNRS (UMR 7042 LIMA) Ecole Européenne de Chimie, Polymères et Matériaux 25 rue Becquerel 67087 Strasbourg Cedex 2 France
| | - Uwe Hahn
- Laboratoire de Chimie des Matériaux Moléculaires Université de Strasbourg et CNRS (UMR 7042 LIMA) Ecole Européenne de Chimie, Polymères et Matériaux 25 rue Becquerel 67087 Strasbourg Cedex 2 France
| | - Iwona Nierengarten
- Laboratoire de Chimie des Matériaux Moléculaires Université de Strasbourg et CNRS (UMR 7042 LIMA) Ecole Européenne de Chimie, Polymères et Matériaux 25 rue Becquerel 67087 Strasbourg Cedex 2 France
| | - Michel Holler
- Laboratoire de Chimie des Matériaux Moléculaires Université de Strasbourg et CNRS (UMR 7042 LIMA) Ecole Européenne de Chimie, Polymères et Matériaux 25 rue Becquerel 67087 Strasbourg Cedex 2 France
| | - Jean‐François Nierengarten
- Laboratoire de Chimie des Matériaux Moléculaires Université de Strasbourg et CNRS (UMR 7042 LIMA) Ecole Européenne de Chimie, Polymères et Matériaux 25 rue Becquerel 67087 Strasbourg Cedex 2 France
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12
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Ruiz-Santaquiteria M, Illescas BM, Abdelnabi R, Boonen A, Mills A, Martí-Marí O, Noppen S, Neyts J, Schols D, Gago F, San-Félix A, Camarasa MJ, Martín N. Multivalent Tryptophan- and Tyrosine-Containing [60]Fullerene Hexa-Adducts as Dual HIV and Enterovirus A71 Entry Inhibitors. Chemistry 2021; 27:10700-10710. [PMID: 33851758 PMCID: PMC8361981 DOI: 10.1002/chem.202101098] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2021] [Indexed: 01/04/2023]
Abstract
Unprecedented 3D hexa‐adducts of [60]fullerene peripherally decorated with twelve tryptophan (Trp) or tyrosine (Tyr) residues have been synthesized. Studies on the antiviral activity of these novel compounds against HIV and EV71 reveal that they are much more potent against HIV and equally active against EV71 than the previously described dendrimer prototypes AL‐385 and AL‐463, which possess the same number of Trp/Tyr residues on the periphery but attached to a smaller and more flexible pentaerythritol core. These results demonstrate the relevance of the globular 3D presentation of the peripheral groups (Trp/Tyr) as well as the length of the spacer connecting them to the central core to interact with the viral envelopes, particularly in the case of HIV, and support the hypothesis that [60]fullerene can be an alternative and attractive biocompatible carbon‐based scaffold for this type of highly symmetrical dendrimers. In addition, the functionalized fullerenes here described, which display twelve peripheral negatively charged indole moieties on their globular surface, define a new and versatile class of compounds with a promising potential in biomedical applications.
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Affiliation(s)
- Marta Ruiz-Santaquiteria
- Departamento de Química Orgánica, Facultad de Química, Universidad Complutense, 28040, Madrid, Spain
| | - Beatriz M Illescas
- Departamento de Química Orgánica, Facultad de Química, Universidad Complutense, 28040, Madrid, Spain
| | - Rana Abdelnabi
- Department of Microbiology and Immunology, Rega Institute for Medical Research, Laboratory of Virology and Chemotherapy, University of Leuven, 3000, Leuven, Belgium
| | - Arnaud Boonen
- Department of Microbiology and Immunology, Rega Institute for Medical Research, Laboratory of Virology and Chemotherapy, University of Leuven, 3000, Leuven, Belgium
| | - Alberto Mills
- Departamento de Ciencias Biomédicas y Unidad Asociada IQM-UAH, Universidad de Alcalá, 28805 Alcalá de Henares, Madrid, Spain
| | - Olaia Martí-Marí
- Instituto de Química Médica (IQM-CSIC), IQM-CSIC, 28006, Madrid, Spain
| | - Sam Noppen
- Department of Microbiology and Immunology, Rega Institute for Medical Research, Laboratory of Virology and Chemotherapy, University of Leuven, 3000, Leuven, Belgium
| | - Johan Neyts
- Department of Microbiology and Immunology, Rega Institute for Medical Research, Laboratory of Virology and Chemotherapy, University of Leuven, 3000, Leuven, Belgium
| | - Dominique Schols
- Department of Microbiology and Immunology, Rega Institute for Medical Research, Laboratory of Virology and Chemotherapy, University of Leuven, 3000, Leuven, Belgium
| | - Federico Gago
- Departamento de Ciencias Biomédicas y Unidad Asociada IQM-UAH, Universidad de Alcalá, 28805 Alcalá de Henares, Madrid, Spain
| | - Ana San-Félix
- Instituto de Química Médica (IQM-CSIC), IQM-CSIC, 28006, Madrid, Spain
| | | | - Nazario Martín
- Departamento de Química Orgánica, Facultad de Química, Universidad Complutense, 28040, Madrid, Spain.,IMDEA-Nanoscience, C/ Faraday 9, Campus de Cantoblanco, 28049, Madrid, Spain
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13
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Hoyos P, Perona A, Juanes O, Rumbero Á, Hernáiz MJ. Synthesis of Glycodendrimers with Antiviral and Antibacterial Activity. Chemistry 2021; 27:7593-7624. [PMID: 33533096 DOI: 10.1002/chem.202005065] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2020] [Indexed: 12/27/2022]
Abstract
Glycodendrimers are an important class of synthetic macromolecules that can be used to mimic many structural and functional features of cell-surface glycoconjugates. Their carbohydrate moieties perform key important functions in bacterial and viral infections, often regulated by carbohydrate-protein interactions. Several studies have shown that the molecular structure, valency and spatial organisation of carbohydrate epitopes in glycoconjugates are key factors in the specificity and avidity of carbohydrate-protein interactions. Choosing the right glycodendrimers almost always helps to interfere with such interactions and blocks bacterial or viral adhesion and entry into host cells as an effective strategy to inhibit bacterial or viral infections. Herein, the state of the art in the design and synthesis of glycodendrimers employed for the development of anti-adhesion therapy against bacterial and viral infections is described.
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Affiliation(s)
- Pilar Hoyos
- Chemistry in Pharmaceutical Sciences Department, Complutense University of Madrid, Plaza Ramón y Cajal s/n, 28040, Madrid, Spain
| | - Almudena Perona
- Chemistry in Pharmaceutical Sciences Department, Complutense University of Madrid, Plaza Ramón y Cajal s/n, 28040, Madrid, Spain
| | - Olga Juanes
- Organic Chemistry Department, Autónoma University of Madrid, Francisco Tomás y Valiente 7, 28049, Madrid, Spain
| | - Ángel Rumbero
- Organic Chemistry Department, Autónoma University of Madrid, Francisco Tomás y Valiente 7, 28049, Madrid, Spain
| | - María J Hernáiz
- Chemistry in Pharmaceutical Sciences Department, Complutense University of Madrid, Plaza Ramón y Cajal s/n, 28040, Madrid, Spain
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14
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Ramos-Soriano J, Rojo J. Glycodendritic structures as DC-SIGN binders to inhibit viral infections. Chem Commun (Camb) 2021; 57:5111-5126. [PMID: 33977972 DOI: 10.1039/d1cc01281a] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
DC-SIGN, a lectin discovered two decades ago, plays a relevant role in innate immunity. Since its discovery, it has turned out to be a target for developing antiviral drugs based on carbohydrates due to its participation in the infection process of several pathogens. A plethora of carbohydrate multivalent systems using different scaffolds have been described to achieve this goal. Our group has made significant contributions to this field, which are revised herein.
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Affiliation(s)
- Javier Ramos-Soriano
- Glycosystems Laboratory, Instituto de Investigaciones Químicas (IIQ), Centro de Investigaciones Científicas Isla de La Cartuja, CSIC and Universidad de Sevilla, Américo Vespucio, 49, 41092 Sevilla, Spain.
| | - Javier Rojo
- Glycosystems Laboratory, Instituto de Investigaciones Químicas (IIQ), Centro de Investigaciones Científicas Isla de La Cartuja, CSIC and Universidad de Sevilla, Américo Vespucio, 49, 41092 Sevilla, Spain.
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15
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Grafting Dendrons onto Pillar[5]Arene Scaffolds. Molecules 2021; 26:molecules26082358. [PMID: 33919656 PMCID: PMC8073356 DOI: 10.3390/molecules26082358] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2021] [Revised: 04/14/2021] [Accepted: 04/14/2021] [Indexed: 11/16/2022] Open
Abstract
With their ten peripheral substituents, pillar[5]arenes are attractive compact scaffolds for the construction of nanomaterials with a controlled number of functional groups distributed around the macrocyclic core. This review paper is focused on the functionalization of pillar[5]arene derivatives with small dendrons to generate dendrimer-like nanomaterials and bioactive compounds. Examples include non-viral gene vectors, bioactive glycoclusters, and liquid-crystalline materials.
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16
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Biglova YN. [2 + 1] Cycloaddition reactions of fullerene C 60 based on diazo compounds. Beilstein J Org Chem 2021; 17:630-670. [PMID: 33747235 PMCID: PMC7940820 DOI: 10.3762/bjoc.17.55] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2020] [Accepted: 02/23/2021] [Indexed: 11/24/2022] Open
Abstract
The most common variant of fullerene core functionalization is the [2 + 1] cycloaddition process. Of these, reactions leading to methanofullerenes are the most promising. They are synthesized in two main reactions: nucleophilic cyclopropanation according to the Bingel method and thermal addition of diazo compounds. This present review summarizes the material on the synthesis of monofunctionalized methanofullerenes - analogues of [60]PCBM - based on various diazo compounds. The main cyclopropanating agents for the synthesis of monosubstituted methanofullerenes, the optimal conditions and the mechanism of the [2 + 1] cycloaddition, as well as the practical application of the target products are analyzed.
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Affiliation(s)
- Yuliya N Biglova
- Department of Chemistry, Bashkir State University, 450076, Ufa, Russian Federation
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17
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Hatton NE, Baumann CG, Fascione MA. Developments in Mannose-Based Treatments for Uropathogenic Escherichia coli-Induced Urinary Tract Infections. Chembiochem 2021; 22:613-629. [PMID: 32876368 PMCID: PMC7894189 DOI: 10.1002/cbic.202000406] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2020] [Revised: 08/28/2020] [Indexed: 12/16/2022]
Abstract
During their lifetime almost half of women will experience a symptomatic urinary tract infection (UTI) with a further half experiencing a relapse within six months. Currently UTIs are treated with antibiotics, but increasing antibiotic resistance rates highlight the need for new treatments. Uropathogenic Escherichia coli (UPEC) is responsible for the majority of symptomatic UTI cases and thus has become a key pathological target. Adhesion of type one pilus subunit FimH at the surface of UPEC strains to mannose-saturated oligosaccharides located on the urothelium is critical to pathogenesis. Since the identification of FimH as a therapeutic target in the late 1980s, a substantial body of research has been generated focusing on the development of FimH-targeting mannose-based anti-adhesion therapies. In this review we will discuss the design of different classes of these mannose-based compounds and their utility and potential as UPEC therapeutics.
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Affiliation(s)
- Natasha E. Hatton
- York Structural Biology Lab, Department of ChemistryUniversity of YorkHeslington RoadYorkYO10 5DDUK
| | | | - Martin A. Fascione
- York Structural Biology Lab, Department of ChemistryUniversity of YorkHeslington RoadYorkYO10 5DDUK
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18
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19
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Magnan F, Dhindsa JS, Anghel M, Bazylewski P, Fanchini G, Gilroy JB. A divergent strategy for the synthesis of redox-active verdazyl radical polymers. Polym Chem 2021. [DOI: 10.1039/d1py00217a] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
We describe a divergent synthetic strategy based on ATRP and CuAAC chemistry for the production of stable radical polymers. As a proof of concept, we prepare verdazyl radical polymers with properties suitable for use in organic electronics.
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Affiliation(s)
- François Magnan
- Department of Chemistry
- The University of Western Ontario
- London
- Canada
- The Centre for Advanced Materials and Biomaterials Research (CAMBR)
| | - Jasveer S. Dhindsa
- Department of Chemistry
- The University of Western Ontario
- London
- Canada
- The Centre for Advanced Materials and Biomaterials Research (CAMBR)
| | - Michael Anghel
- Department of Chemistry
- The University of Western Ontario
- London
- Canada
- The Centre for Advanced Materials and Biomaterials Research (CAMBR)
| | - Paul Bazylewski
- The Centre for Advanced Materials and Biomaterials Research (CAMBR)
- The University of Western Ontario
- London
- Canada
- Department of Physics and Astronomy
| | - Giovanni Fanchini
- Department of Chemistry
- The University of Western Ontario
- London
- Canada
- The Centre for Advanced Materials and Biomaterials Research (CAMBR)
| | - Joe B. Gilroy
- Department of Chemistry
- The University of Western Ontario
- London
- Canada
- The Centre for Advanced Materials and Biomaterials Research (CAMBR)
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20
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Xu J, Zheng T, Zhao C, Huang X, Du W. Resistance of nepetin and its analogs on the fibril formation of human islet amyloid polypeptide. Int J Biol Macromol 2020; 166:435-447. [PMID: 33127549 DOI: 10.1016/j.ijbiomac.2020.10.202] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2020] [Revised: 10/10/2020] [Accepted: 10/24/2020] [Indexed: 12/17/2022]
Abstract
The self-aggregation of human islet amyloid polypeptide (hIAPP) into toxic oligomers and fibrils is closely linked to the pathogenesis of type II diabetes mellitus. Inhibitors can resist hIAPP misfolding, and the resistance can be considered an alternative therapeutic strategy for this disease. Flavones have been applied in the field of diabetes research, however, the inhibition mechanism of many compounds on the fibril formation of related pathogenic peptides remains unclear. In this work, four flavones, namely, nepetin (1), genkwanin (2), luteolin (3), and apigenin (4), were used to impede the peptide aggregation of hIAPP and compared with that on Aβ protein, which is correlated with Alzheimer's disease. Results indicated that the four flavones effectively inhibited the aggregation of the two peptides and mostly dispersed the mature fibrils to monomers. The interactions of flavones with the two peptides demonstrated a spontaneous and exothermic reaction through predominant hydrophobic and hydrogen bonding interactions. The binding affinities of 1 and 3 were stronger than those of 2 and 4 possibly because of the difference in the substituent groups of these molecules. These flavones could also decrease membrane leakage and upregulate cell viability by reducing the formation of toxic oligomers. Moreover, the performance of these flavones in terms of binding affinity, cellular viability, and decreased oligomerization was better on hIAPP than on Aβ. This work offered valuable data about these flavones as prospective therapeutic agents against relevant diseases.
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Affiliation(s)
- Jufei Xu
- Department of Chemistry, Renmin University of China, Beijing 100872, China
| | - Ting Zheng
- Department of Chemistry, Renmin University of China, Beijing 100872, China
| | - Cong Zhao
- Department of Chemistry, Renmin University of China, Beijing 100872, China
| | - Xiangyi Huang
- Department of Chemistry, Renmin University of China, Beijing 100872, China
| | - Weihong Du
- Department of Chemistry, Renmin University of China, Beijing 100872, China.
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21
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Jacobi F, Wilms D, Seiler T, Queckbörner T, Tabatabai M, Hartmann L, Schmidt S. Effect of PEGylation on Receptor Anchoring and Steric Shielding at Interfaces: An Adhesion and Surface Plasmon Resonance Study with Precision Polymers. Biomacromolecules 2020; 21:4850-4856. [PMID: 32986404 DOI: 10.1021/acs.biomac.0c01060] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
This study aims at quantifying the steric shielding effect of multivalent glycoconjugates targeting pathogens by blocking their carbohydrate binding sites. Specifically, PEGylated and non-PEGylated glycoconjugates are studied as inhibitors of lectins and bacterial adhesins evaluating the steric repulsion effect of the nonbinding PEG chains. We use the soft colloidal probe (SCP) adhesion assay to monitor the change in the adhesion energy of mannose (Man)-decorated hydrogel particles on a layer of concanavalin A (ConA) in the presence of sequence-defined multivalent glycoconjugate inhibitors over time. The results show that PEGylated glycoconjugates achieve a stronger adhesion inhibition when compared to non-PEGylated glycoconjugates although the dissociation constants (KD) of the PEGgylated compounds to ConA were larger. These results appear in line with Escherichia coli adhesion inhibition assays showing a small increase of bacteria detachment by PEGgylated glycoconjugates compared to non-PEGylated compounds. This suggests that an increase of sterical shielding via PEGylation may help reduce the invasiveness of pathogens even after they have adhered. Adhesion studies based on electrostatic interactions using amine-linked PEG of varying molecular weight confirm that such sterical shielding effect is not limited to carbohydrate-mediated adhesion.
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Affiliation(s)
- Fawad Jacobi
- Institute of Organic and Macromolecular Chemistry, Heinrich-Heine-University Düsseldorf, Universitätsstraße 1, 40225 Dusseldorf, Germany
| | - Dimitri Wilms
- Institute of Organic and Macromolecular Chemistry, Heinrich-Heine-University Düsseldorf, Universitätsstraße 1, 40225 Dusseldorf, Germany
| | - Theresa Seiler
- Institute of Organic and Macromolecular Chemistry, Heinrich-Heine-University Düsseldorf, Universitätsstraße 1, 40225 Dusseldorf, Germany
| | - Torben Queckbörner
- Institute of Organic and Macromolecular Chemistry, Heinrich-Heine-University Düsseldorf, Universitätsstraße 1, 40225 Dusseldorf, Germany
| | - Monir Tabatabai
- Institute of Organic and Macromolecular Chemistry, Heinrich-Heine-University Düsseldorf, Universitätsstraße 1, 40225 Dusseldorf, Germany
| | - Laura Hartmann
- Institute of Organic and Macromolecular Chemistry, Heinrich-Heine-University Düsseldorf, Universitätsstraße 1, 40225 Dusseldorf, Germany
| | - Stephan Schmidt
- Institute of Organic and Macromolecular Chemistry, Heinrich-Heine-University Düsseldorf, Universitätsstraße 1, 40225 Dusseldorf, Germany
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22
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Martínez-Bailén M, Galbis E, Carmona AT, de-Paz MV, Robina I. Preparation of water-soluble glycopolymers derived from five-membered iminosugars. Eur Polym J 2019. [DOI: 10.1016/j.eurpolymj.2019.07.027] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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23
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Ramos-Soriano J, Reina JJ, Illescas BM, de la Cruz N, Rodríguez-Pérez L, Lasala F, Rojo J, Delgado R, Martín N. Synthesis of Highly Efficient Multivalent Disaccharide/[60]Fullerene Nanoballs for Emergent Viruses. J Am Chem Soc 2019; 141:15403-15412. [DOI: 10.1021/jacs.9b08003] [Citation(s) in RCA: 64] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Affiliation(s)
- Javier Ramos-Soriano
- Departamento de Química Orgánica, Facultad de Química, Universidad Complutense, 28040 Madrid, Spain
- Glycosystems Laboratory, Instituto de Investigaciones Químicas (IIQ), CSIC − Universidad de Sevilla, Av. Américo Vespucio 49, Seville 41092, Spain
| | - José J. Reina
- Glycosystems Laboratory, Instituto de Investigaciones Químicas (IIQ), CSIC − Universidad de Sevilla, Av. Américo Vespucio 49, Seville 41092, Spain
| | - Beatriz M. Illescas
- Departamento de Química Orgánica, Facultad de Química, Universidad Complutense, 28040 Madrid, Spain
| | - Noelia de la Cruz
- Glycosystems Laboratory, Instituto de Investigaciones Químicas (IIQ), CSIC − Universidad de Sevilla, Av. Américo Vespucio 49, Seville 41092, Spain
| | - Laura Rodríguez-Pérez
- Departamento de Química Orgánica, Facultad de Química, Universidad Complutense, 28040 Madrid, Spain
| | - Fátima Lasala
- Laboratorio de Microbiología Molecular, Instituto de Investigación Hospital, 12 de Octubre (imas12), 28041 Madrid, Spain
| | - Javier Rojo
- Glycosystems Laboratory, Instituto de Investigaciones Químicas (IIQ), CSIC − Universidad de Sevilla, Av. Américo Vespucio 49, Seville 41092, Spain
| | - Rafael Delgado
- Laboratorio de Microbiología Molecular, Instituto de Investigación Hospital, 12 de Octubre (imas12), 28041 Madrid, Spain
| | - Nazario Martín
- Departamento de Química Orgánica, Facultad de Química, Universidad Complutense, 28040 Madrid, Spain
- IMDEA-Nanoscience, Campus Cantoblanco, 28049 Madrid, Spain
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24
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Padole MC, Deshpande PA. Structural and electronic properties of chemically modified fullerenes. MOLECULAR SIMULATION 2019. [DOI: 10.1080/08927022.2019.1572892] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- Manjusha C. Padole
- Quantum and Molecular Engineering Laboratory, Department of Chemical Engineering, Indian Institute of Technology Kharagpur, Kharagpur, India
| | - Parag A. Deshpande
- Quantum and Molecular Engineering Laboratory, Department of Chemical Engineering, Indian Institute of Technology Kharagpur, Kharagpur, India
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25
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Abellán-Flos M, Timmer BJJ, Altun S, Aastrup T, Vincent SP, Ramström O. QCM sensing of multivalent interactions between lectins and well-defined glycosylated nanoplatforms. Biosens Bioelectron 2019; 139:111328. [PMID: 31136921 DOI: 10.1016/j.bios.2019.111328] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2019] [Revised: 04/29/2019] [Accepted: 05/14/2019] [Indexed: 12/29/2022]
Abstract
Quartz crystal microbalance (QCM) methodology has been adopted to unravel important factors contributing to the "cluster glycoside effect" observed in carbohydrate-lectin interactions. Well-defined, glycosylated nanostructures of precise sizes, geometries and functionalization patterns were designed and synthesized, and applied to analysis of the interaction kinetics and thermodynamics with immobilized lectins. The nanostructures were based on Borromean rings, dodecaamine cages, and fullerenes, each of which carrying a defined number of carbohydrate ligands at precise locations. The synthesis of the Borromeates and dodecaamine cages was easily adjustable due to the modular assembly of the structures, resulting in variations in presentation mode. The binding properties of the glycosylated nanoplatforms were evaluated using flow-through QCM technology, as well as hemagglutination inhibition assays, and compared with dodecaglycosylated fullerenes and a monovalent reference. With the QCM setup, the association and dissociation rate constants and the associated equilibrium constants of the interactions could be estimated, and the results used to delineate the multivalency effects of the lectin-nanostructure interactions.
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Affiliation(s)
- Marta Abellán-Flos
- University of Namur, Départment de Chimie, Laboratoire de Chimie Bio-Organique, rue de Bruxelles 61, B-5000, Namur, Belgium
| | - Brian J J Timmer
- KTH - Royal Institute of Technology, Department of Chemistry, Teknikringen 36, S-100 44, Stockholm, Sweden
| | - Samuel Altun
- Attana AB, Björnnäsvägen 21, SE-114, 19 Stockholm, Sweden
| | - Teodor Aastrup
- Attana AB, Björnnäsvägen 21, SE-114, 19 Stockholm, Sweden.
| | - Stéphane P Vincent
- University of Namur, Départment de Chimie, Laboratoire de Chimie Bio-Organique, rue de Bruxelles 61, B-5000, Namur, Belgium.
| | - Olof Ramström
- KTH - Royal Institute of Technology, Department of Chemistry, Teknikringen 36, S-100 44, Stockholm, Sweden; University of Massachusetts Lowell, Department of Chemistry, One University Ave., Lowell, MA, 01854, USA; Linnaeus University, Department of Chemical and Biomedical Sciences, SE-39182, Kalmar, Sweden.
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26
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A New Approach for Glyco-Functionalization of Collagen-Based Biomaterials. Int J Mol Sci 2019; 20:ijms20071747. [PMID: 30970594 PMCID: PMC6480084 DOI: 10.3390/ijms20071747] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2019] [Revised: 04/01/2019] [Accepted: 04/03/2019] [Indexed: 12/30/2022] Open
Abstract
The cell microenvironment plays a pivotal role in mediating cell adhesion, survival, and proliferation in physiological and pathological states. The relevance of extracellular matrix (ECM) proteins in cell fate control is an important issue to take into consideration for both tissue engineering and cell biology studies. The glycosylation of ECM proteins remains, however, largely unexplored. In order to investigate the physio-pathological effects of differential ECM glycosylation, the design of affordable chemoselective methods for ECM components glycosylation is desirable. We will describe a new chemoselective glycosylation approach exploitable in aqueous media and on non-protected substrates, allowing rapid access to glyco-functionalized biomaterials.
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27
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Schönemann W, Cramer J, Mühlethaler T, Fiege B, Silbermann M, Rabbani S, Dätwyler P, Zihlmann P, Jakob RP, Sager CP, Smieško M, Schwardt O, Maier T, Ernst B. Improvement of Aglycone π-Stacking Yields Nanomolar to Sub-nanomolar FimH Antagonists. ChemMedChem 2019; 14:749-757. [PMID: 30710416 DOI: 10.1002/cmdc.201900051] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2019] [Indexed: 11/08/2022]
Abstract
Antimicrobial resistance has become a serious concern for the treatment of urinary tract infections. In this context, an anti-adhesive approach targeting FimH, a bacterial lectin enabling the attachment of E. coli to host cells, has attracted considerable interest. FimH can adopt a low/medium-affinity state in the absence and a high-affinity state in the presence of shear forces. Until recently, mostly the high-affinity state has been investigated, despite the fact that a therapeutic antagonist should bind predominantly to the low-affinity state. In this communication, we demonstrate that fluorination of biphenyl α-d-mannosides leads to compounds with perfect π-π stacking interactions with the tyrosine gate of FimH, yielding low nanomolar to sub-nanomolar KD values for the low- and high-affinity states, respectively. The face-to-face alignment of the perfluorinated biphenyl group of FimH ligands and Tyr48 was confirmed by crystal structures as well as 1 H,15 N-HSQC NMR analysis. Finally, fluorination improves pharmacokinetic parameters predictive for oral availability.
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Affiliation(s)
- Wojciech Schönemann
- Department of Pharmaceutical Sciences, University of Basel, Klingelbergstrasse 50, 4056, Basel, Switzerland
| | - Jonathan Cramer
- Department of Pharmaceutical Sciences, University of Basel, Klingelbergstrasse 50, 4056, Basel, Switzerland
| | - Tobias Mühlethaler
- Department of Pharmaceutical Sciences, University of Basel, Klingelbergstrasse 50, 4056, Basel, Switzerland
| | - Brigitte Fiege
- Department of Pharmaceutical Sciences, University of Basel, Klingelbergstrasse 50, 4056, Basel, Switzerland
| | - Marleen Silbermann
- Department of Pharmaceutical Sciences, University of Basel, Klingelbergstrasse 50, 4056, Basel, Switzerland
| | - Said Rabbani
- Department of Pharmaceutical Sciences, University of Basel, Klingelbergstrasse 50, 4056, Basel, Switzerland
| | - Philipp Dätwyler
- Department of Pharmaceutical Sciences, University of Basel, Klingelbergstrasse 50, 4056, Basel, Switzerland
| | - Pascal Zihlmann
- Department of Pharmaceutical Sciences, University of Basel, Klingelbergstrasse 50, 4056, Basel, Switzerland
| | - Roman P Jakob
- Department Biozentrum, Focal Area Structural Biology, University of Basel, Klingelbergstrasse 70, 4056, Basel, Switzerland
| | - Christoph P Sager
- Department of Pharmaceutical Sciences, University of Basel, Klingelbergstrasse 50, 4056, Basel, Switzerland
| | - Martin Smieško
- Department of Pharmaceutical Sciences, University of Basel, Klingelbergstrasse 50, 4056, Basel, Switzerland
| | - Oliver Schwardt
- Department of Pharmaceutical Sciences, University of Basel, Klingelbergstrasse 50, 4056, Basel, Switzerland
| | - Timm Maier
- Department Biozentrum, Focal Area Structural Biology, University of Basel, Klingelbergstrasse 70, 4056, Basel, Switzerland
| | - Beat Ernst
- Department of Pharmaceutical Sciences, University of Basel, Klingelbergstrasse 50, 4056, Basel, Switzerland
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28
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Agrahari AK, Singh AS, Singh AK, Mishra N, Singh M, Prakash P, Tiwari VK. Click inspired synthesis of hexa and octadecavalent peripheral galactosylated glycodendrimers and their possible therapeutic applications. NEW J CHEM 2019. [DOI: 10.1039/c9nj02564b] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Click inspired glycodendrimers comprising a rigid hexapropargyloxy benzene core with peripheral β-d-galactopyranosidic units were developed and evaluated for their therapeutic potential.
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Affiliation(s)
- Anand K. Agrahari
- Department of Chemistry
- Institute of Science
- Banaras Hindu University
- Varanasi-221005
- India
| | - Anoop S. Singh
- Department of Chemistry
- Institute of Science
- Banaras Hindu University
- Varanasi-221005
- India
| | - Ashish Kumar Singh
- Department of Microbiology
- Institute of Medical Sciences
- Banaras Hindu University
- Varanasi-221005
- India
| | - Nidhi Mishra
- Department of Chemistry
- Institute of Science
- Banaras Hindu University
- Varanasi-221005
- India
| | - Mala Singh
- Department of Chemistry
- Institute of Science
- Banaras Hindu University
- Varanasi-221005
- India
| | - Pradyot Prakash
- Department of Microbiology
- Institute of Medical Sciences
- Banaras Hindu University
- Varanasi-221005
- India
| | - Vinod K. Tiwari
- Department of Chemistry
- Institute of Science
- Banaras Hindu University
- Varanasi-221005
- India
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29
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A Novel Integrated Way for Deciphering the Glycan Code for the FimH Lectin. Molecules 2018; 23:molecules23112794. [PMID: 30373288 PMCID: PMC6278545 DOI: 10.3390/molecules23112794] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2018] [Revised: 10/18/2018] [Accepted: 10/25/2018] [Indexed: 12/17/2022] Open
Abstract
The fimbrial lectin FimH from uro- and enteropathogenic Escherichia coli binds with nanomolar affinity to oligomannose glycans exposing Manα1,3Man dimannosides at their non-reducing end, but only with micromolar affinities to Manα1,2Man dimannosides. These two dimannoses play a significantly distinct role in infection by E. coli. Manα1,2Man has been described early on as shielding the (Manα1,3Man) glycan that is more relevant to strong bacterial adhesion and invasion. We quantified the binding of the two dimannoses (Manα1,2Man and Manα1,3Man to FimH using ELLSA and isothermal microcalorimetry and calculated probabilities of binding modes using molecular dynamics simulations. Our experimentally and computationally determined binding energies confirm a higher affinity of FimH towards the dimannose Manα1,3Man. Manα1,2Man displays a much lower binding enthalpy combined with a high entropic gain. Most remarkably, our molecular dynamics simulations indicate that Manα1,2Man cannot easily take its major conformer from water into the FimH binding site and that FimH is interacting with two very different conformers of Manα1,2Man that occupy 42% and 28% respectively of conformational space. The finding that Manα1,2Man binding to FimH is unstable agrees with the earlier suggestion that E. coli may use the Manα1,2Man epitope for transient tethering along cell surfaces in order to enhance dispersion of the infection.
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Kalograiaki I, Abellán-Flos M, Fernández LÁ, Menéndez M, Vincent SP, Solís D. Direct Evaluation of Live Uropathogenic Escherichia coli Adhesion and Efficiency of Antiadhesive Compounds Using a Simple Microarray Approach. Anal Chem 2018; 90:12314-12321. [DOI: 10.1021/acs.analchem.8b04235] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Affiliation(s)
- Ioanna Kalograiaki
- Instituto de Química Física Rocasolano, CSIC, Serrano 119, 28006 Madrid, Spain
- CIBER de Enfermedades Respiratorias (CIBERES), Avda Monforte de Lemos 3-5, 28029 Madrid, Spain
- Centro de Investigaciones Biológicas, CSIC, Ramiro de Maeztu 9, 28040 Madrid, Spain
| | - Marta Abellán-Flos
- Département de Chimie, Laboratoire de Chimie Bio-Organique, University of Namur (UNamur), Rue de Bruxelles 61, B-5000 Namur, Belgium
| | - Luis Ángel Fernández
- Centro Nacional de Biotecnología (CNB), CSIC, Darwin 3, Campus UAM Cantoblanco, 28049 Madrid, Spain
| | - Margarita Menéndez
- Instituto de Química Física Rocasolano, CSIC, Serrano 119, 28006 Madrid, Spain
- CIBER de Enfermedades Respiratorias (CIBERES), Avda Monforte de Lemos 3-5, 28029 Madrid, Spain
| | - Stéphane P. Vincent
- Département de Chimie, Laboratoire de Chimie Bio-Organique, University of Namur (UNamur), Rue de Bruxelles 61, B-5000 Namur, Belgium
| | - Dolores Solís
- Instituto de Química Física Rocasolano, CSIC, Serrano 119, 28006 Madrid, Spain
- CIBER de Enfermedades Respiratorias (CIBERES), Avda Monforte de Lemos 3-5, 28029 Madrid, Spain
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Rodríguez-Pérez L, Ramos-Soriano J, Pérez-Sánchez A, Illescas BM, Muñoz A, Luczkowiak J, Lasala F, Rojo J, Delgado R, Martín N. Nanocarbon-Based Glycoconjugates as Multivalent Inhibitors of Ebola Virus Infection. J Am Chem Soc 2018; 140:9891-9898. [DOI: 10.1021/jacs.8b03847] [Citation(s) in RCA: 51] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Laura Rodríguez-Pérez
- Departamento de Química Orgánica, Facultad de Química, Universidad Complutense de Madrid, Avenida Complutense s/n, 28040 Madrid, Spain
| | - Javier Ramos-Soriano
- Departamento de Química Orgánica, Facultad de Química, Universidad Complutense de Madrid, Avenida Complutense s/n, 28040 Madrid, Spain
| | - Alfonso Pérez-Sánchez
- Departamento de Química Orgánica, Facultad de Química, Universidad Complutense de Madrid, Avenida Complutense s/n, 28040 Madrid, Spain
| | - Beatriz M. Illescas
- Departamento de Química Orgánica, Facultad de Química, Universidad Complutense de Madrid, Avenida Complutense s/n, 28040 Madrid, Spain
| | - Antonio Muñoz
- Departamento de Química Orgánica, Facultad de Química, Universidad Complutense de Madrid, Avenida Complutense s/n, 28040 Madrid, Spain
| | - Joanna Luczkowiak
- Laboratorio de Microbiología Molecular, Instituto de Investigación Hospital 12 de Octubre (imas12), 28041 Madrid, Spain
| | - Fátima Lasala
- Laboratorio de Microbiología Molecular, Instituto de Investigación Hospital 12 de Octubre (imas12), 28041 Madrid, Spain
| | - Javier Rojo
- Glycosystems Laboratory, Instituto de Investigaciones Químicas (IIQ), CSIC−Universidad de Sevilla, Avenida Américo Vespucio 49, 41092 Seville, Spain
| | - Rafael Delgado
- Laboratorio de Microbiología Molecular, Instituto de Investigación Hospital 12 de Octubre (imas12), 28041 Madrid, Spain
| | - Nazario Martín
- Departamento de Química Orgánica, Facultad de Química, Universidad Complutense de Madrid, Avenida Complutense s/n, 28040 Madrid, Spain
- IMDEA-Nanoscience, Campus Cantoblanco, 28049 Madrid, Spain
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Gavat O, Nguyet Trinh TM, Moulin E, Ellis T, Maaloum M, Buhler E, Fleith G, Nierengarten JF, Giuseppone N. 3D supramolecular self-assembly of [60]fullerene hexaadducts decorated with triarylamine molecules. Chem Commun (Camb) 2018; 54:7657-7660. [PMID: 29932182 DOI: 10.1039/c8cc04079f] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
A clickable fullerene hexa-adduct scaffold has been functionalized with twelve triarylamine subunits. The light-triggered self-assembly of this molecular unit leads to 3D honeycomb-like structures with inner pores of around 10 nm diameter. Multiple grafting of triarylamine subunits onto a hard-core C60 unit increases the dimensionality of the self-assembly process by reticulating the 1D nanowires typically obtained from the supramolecular polymerization of triarylamine monomers.
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Affiliation(s)
- Odile Gavat
- SAMS Research Group, Institut Charles Sadron, CNRS, University of Strasbourg, 23 rue du Loess, 67034 Strasbourg Cedex 2, BP 84087, France.
| | - Thi Minh Nguyet Trinh
- Laboratoire de Chimie des Matériaux Moléculaires, Université de Strasbourg et CNRS (LIMA - UMR 7042), Ecole Européenne de Chimie, Matériaux et Polymères (ECPM), 25 rue Becquerel, 67087 Strasbourg Cedex 2, France.
| | - Emilie Moulin
- SAMS Research Group, Institut Charles Sadron, CNRS, University of Strasbourg, 23 rue du Loess, 67034 Strasbourg Cedex 2, BP 84087, France.
| | - Thomas Ellis
- SAMS Research Group, Institut Charles Sadron, CNRS, University of Strasbourg, 23 rue du Loess, 67034 Strasbourg Cedex 2, BP 84087, France.
| | - Mounir Maaloum
- SAMS Research Group, Institut Charles Sadron, CNRS, University of Strasbourg, 23 rue du Loess, 67034 Strasbourg Cedex 2, BP 84087, France.
| | - Eric Buhler
- Matière et Systèmes Complexes (MSC) Laboratory, UMR CNRS 7057, Sorbonne Paris Cité, University of Paris Diderot-Paris VII, 75205 Paris Cedex 13, France
| | - Guillaume Fleith
- SAMS Research Group, Institut Charles Sadron, CNRS, University of Strasbourg, 23 rue du Loess, 67034 Strasbourg Cedex 2, BP 84087, France.
| | - Jean-François Nierengarten
- Laboratoire de Chimie des Matériaux Moléculaires, Université de Strasbourg et CNRS (LIMA - UMR 7042), Ecole Européenne de Chimie, Matériaux et Polymères (ECPM), 25 rue Becquerel, 67087 Strasbourg Cedex 2, France.
| | - Nicolas Giuseppone
- SAMS Research Group, Institut Charles Sadron, CNRS, University of Strasbourg, 23 rue du Loess, 67034 Strasbourg Cedex 2, BP 84087, France.
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Nierengarten JF. Fullerene hexa-adduct scaffolding for the construction of giant molecules. Chem Commun (Camb) 2018; 53:11855-11868. [PMID: 29051931 DOI: 10.1039/c7cc07479d] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Hexa-substituted fullerenes are unique scaffolds for the fast construction of globular dendrimers. Efficient synthetic methodologies based on the post-functionalization of pre-constructed fullerene hexa-adduct derivatives have been reported in recent years and dendrimers difficult or even impossible to prepare by classical fullerene chemistry are now easily accessible. Fullerodendrimers for various applications have been thus prepared. Examples include liquid crystalline materials, non-viral gene delivery systems and bioactive glycoclusters. On the other hand, fullerene hexa-adduct building blocks have been used for the ultra-fast synthesis of giant dendrimers. Indeed, the resulting dendrimers of first generation are already surrounded by 120 peripheral functional groups. This strategy has been used to prepare giant glycoclusters with anti-viral activity and multivalent glycosidase inhibitors.
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Affiliation(s)
- Jean-François Nierengarten
- Laboratoire de Chimie des Matériaux Moléculaires, Université de Strasbourg et CNRS (UMR 7509), Ecole Européenne de Chimie, Polymères et Matériaux (ECPM), 25 rue Becquerel, 67087 Strasbourg Cedex 2, France.
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Hamer M, Bassi N, Agata Grela D. Development of an electrophoretic method based on nanostructured materials for HbA1c determination. Electrophoresis 2018; 39:1048-1053. [PMID: 29384199 DOI: 10.1002/elps.201700484] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2017] [Revised: 01/24/2018] [Accepted: 01/24/2018] [Indexed: 11/06/2022]
Abstract
Glycosylated hemoglobin (HbA1c) detection is performed routinely in hospitals as it is the most widespread confirmatory diagnosis of diabetes mellitus. Here we present a novel CE method for measuring HbA1c by introducing silica nanoparticles (NPs) modified with a boronic acid derivative (sugar loadings of 51 ± 2 μg/mg) as pseudo-stationary phase. Before the sample injection, SiO2 NP─B(OH)2 were introduced via pressure. Electrophoretic separation was explored through variation of the buffer pH and separation voltage, being the best separation, resolution and shorter separation time achieved with a 25 mM phosphate buffer pH 6.5. The calibration curve obtained was expressed as Area = 182.05%-1 × HbA1c - 377.02; R2 = 0.9826, using a UV/VIS absorbance detector at 415 nm (diode array). No interferences were observed from carbamylated or acetylated hemoglobin and the method shows a noteworthy stability. A paired t-test was applied to compare the developed CE method with a commercial HbA1c test and no significant variations have been observed at a 90% significance level.
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Affiliation(s)
- Mariana Hamer
- Universidad de Buenos Aires, Facultad de Farmacia y Bioquímica, Dpto. Química Analítica y Fisicoquímica, Cátedra de Química Analítica, Junin, Buenos Aires, Argentina.,CONICET-Instituto de Nanosistemas, Universidad de San Martín, Campus Miguelete, San Martín, Provincia de Buenos Aires, Argentina
| | - Narella Bassi
- Universidad de Buenos Aires, Facultad de Farmacia y Bioquímica, Dpto. Química Analítica y Fisicoquímica, Cátedra de Química Analítica, Junin, Buenos Aires, Argentina
| | - Denise Agata Grela
- Universidad de Buenos Aires, Facultad de Farmacia y Bioquímica, Dpto. Química Analítica y Fisicoquímica, Cátedra de Química Analítica, Junin, Buenos Aires, Argentina
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Igde S, Röblitz S, Müller A, Kolbe K, Boden S, Fessele C, Lindhorst TK, Weber M, Hartmann L. Linear Precision Glycomacromolecules with Varying Interligand Spacing and Linker Functionalities Binding to Concanavalin A and the Bacterial Lectin FimH. Macromol Biosci 2017; 17. [DOI: 10.1002/mabi.201700198] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2017] [Revised: 08/18/2017] [Indexed: 12/16/2022]
Affiliation(s)
- Sinaida Igde
- Department for Organic Chemistry and Macromolecular Chemistry; Heinrich-Heine-Universität; Universitätsstraße 1 40225 Düsseldorf Germany
| | - Susanna Röblitz
- Department of Numerical Mathematics; Zuse Institute Berlin (ZIB); Takustr. 7 14195 Berlin Germany
- Department of Mathematics and Computer Science; Freie Universität Berlin; Arnimallee 6 14195 Berlin Germany
| | - Anne Müller
- Otto Diels Institute of Organic Chemistry; Christiana Albertina University of Kiel; Otto-Hahn-Platz 3-4 24118 Kiel Germany
| | - Katharina Kolbe
- Otto Diels Institute of Organic Chemistry; Christiana Albertina University of Kiel; Otto-Hahn-Platz 3-4 24118 Kiel Germany
| | - Sophia Boden
- Department for Organic Chemistry and Macromolecular Chemistry; Heinrich-Heine-Universität; Universitätsstraße 1 40225 Düsseldorf Germany
| | - Claudia Fessele
- Otto Diels Institute of Organic Chemistry; Christiana Albertina University of Kiel; Otto-Hahn-Platz 3-4 24118 Kiel Germany
| | - Thisbe K. Lindhorst
- Otto Diels Institute of Organic Chemistry; Christiana Albertina University of Kiel; Otto-Hahn-Platz 3-4 24118 Kiel Germany
| | - Marcus Weber
- Department of Numerical Mathematics; Zuse Institute Berlin (ZIB); Takustr. 7 14195 Berlin Germany
- Department of Mathematics and Computer Science; Freie Universität Berlin; Arnimallee 6 14195 Berlin Germany
| | - Laura Hartmann
- Department for Organic Chemistry and Macromolecular Chemistry; Heinrich-Heine-Universität; Universitätsstraße 1 40225 Düsseldorf Germany
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Touaibia M, Krammer EM, Shiao TC, Yamakawa N, Wang Q, Glinschert A, Papadopoulos A, Mousavifar L, Maes E, Oscarson S, Vergoten G, Lensink MF, Roy R, Bouckaert J. Sites for Dynamic Protein-Carbohydrate Interactions of O- and C-Linked Mannosides on the E. coli FimH Adhesin. Molecules 2017; 22:molecules22071101. [PMID: 28671638 PMCID: PMC6152123 DOI: 10.3390/molecules22071101] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2017] [Revised: 06/25/2017] [Accepted: 06/28/2017] [Indexed: 01/28/2023] Open
Abstract
Antagonists of the Escherichia coli type-1 fimbrial adhesin FimH are recognized as attractive alternatives for antibiotic therapies and prophylaxes against acute and recurrent bacterial infections. In this study α-d-mannopyranosides O- or C-linked with an alkyl, alkene, alkyne, thioalkyl, amide, or sulfonamide were investigated to fit a hydrophobic substituent with up to two aryl groups within the tyrosine gate emerging from the mannose-binding pocket of FimH. The results were summarized into a set of structure-activity relationships to be used in FimH-targeted inhibitor design: alkene linkers gave an improved affinity and inhibitory potential, because of their relative flexibility combined with a favourable interaction with isoleucine-52 located in the middle of the tyrosine gate. Of particular interest is a C-linked mannoside, alkene-linked to an ortho-substituted biphenyl that has an affinity similar to its O-mannosidic analog but superior to its para-substituted analog. Docking of its high-resolution NMR solution structure to the FimH adhesin indicated that its ultimate, ortho-placed phenyl ring is able to interact with isoleucine-13, located in the clamp loop that undergoes conformational changes under shear force exerted on the bacteria. Molecular dynamics simulations confirmed that a subpopulation of the C-mannoside conformers is able to interact in this secondary binding site of FimH.
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Affiliation(s)
- Mohamed Touaibia
- Pharmaqam, Department of Chemistry, Université du Québec à Montréal, P. O. Box 8888, Succ. Centre-ville, Montréal, QC H3C 3P8, Canada.
- Department of Chemistry and Biochemistry, Université de Moncton, Moncton, NB E1A 3E9, Canada.
| | - Eva-Maria Krammer
- Unité de Glycobiologie Structurale et Fonctionnelle (UGSF), UMR8576 du CNRS, Université de Lille, F-59000 Lille, France.
| | - Tze C Shiao
- Pharmaqam, Department of Chemistry, Université du Québec à Montréal, P. O. Box 8888, Succ. Centre-ville, Montréal, QC H3C 3P8, Canada.
| | - Nao Yamakawa
- Unité de Glycobiologie Structurale et Fonctionnelle (UGSF), UMR8576 du CNRS, Université de Lille, F-59000 Lille, France.
| | - Qingan Wang
- Pharmaqam, Department of Chemistry, Université du Québec à Montréal, P. O. Box 8888, Succ. Centre-ville, Montréal, QC H3C 3P8, Canada.
| | - Anja Glinschert
- Center for Synthesis and Chemical Biology (CSCB), University College Dublin, Belfield, Dublin 4, Ireland.
| | - Alex Papadopoulos
- Pharmaqam, Department of Chemistry, Université du Québec à Montréal, P. O. Box 8888, Succ. Centre-ville, Montréal, QC H3C 3P8, Canada.
| | - Leila Mousavifar
- Pharmaqam, Department of Chemistry, Université du Québec à Montréal, P. O. Box 8888, Succ. Centre-ville, Montréal, QC H3C 3P8, Canada.
| | - Emmanuel Maes
- Unité de Glycobiologie Structurale et Fonctionnelle (UGSF), UMR8576 du CNRS, Université de Lille, F-59000 Lille, France.
| | - Stefan Oscarson
- Center for Synthesis and Chemical Biology (CSCB), University College Dublin, Belfield, Dublin 4, Ireland.
| | - Gerard Vergoten
- Unité de Glycobiologie Structurale et Fonctionnelle (UGSF), UMR8576 du CNRS, Université de Lille, F-59000 Lille, France.
| | - Marc F Lensink
- Unité de Glycobiologie Structurale et Fonctionnelle (UGSF), UMR8576 du CNRS, Université de Lille, F-59000 Lille, France.
| | - René Roy
- Pharmaqam, Department of Chemistry, Université du Québec à Montréal, P. O. Box 8888, Succ. Centre-ville, Montréal, QC H3C 3P8, Canada.
| | - Julie Bouckaert
- Unité de Glycobiologie Structurale et Fonctionnelle (UGSF), UMR8576 du CNRS, Université de Lille, F-59000 Lille, France.
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Mydock-McGrane LK, Hannan TJ, Janetka JW. Rational design strategies for FimH antagonists: new drugs on the horizon for urinary tract infection and Crohn's disease. Expert Opin Drug Discov 2017; 12:711-731. [PMID: 28506090 DOI: 10.1080/17460441.2017.1331216] [Citation(s) in RCA: 63] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
INTRODUCTION The bacterial adhesin FimH is a virulence factor and an attractive therapeutic target for urinary tract infection (UTI) and Crohn's Disease (CD). Located on type 1 pili of uropathogenic E. coli (UPEC), the FimH adhesin plays an integral role in the pathogenesis of UPEC. Recent efforts have culminated in the development of small-molecule mannoside FimH antagonists that target the mannose-binding lectin domain of FimH, inhibiting its function and preventing UPEC from binding mannosylated host cells in the bladder, thereby circumventing infection. Areas covered: The authors describe the structure-guided design of mannoside ligands, and review the structural biology of the FimH lectin domain. Additionally, they discuss the lead optimization of mannosides for therapeutic application in UTI and CD, and describe various assays used to measure mannoside potency in vitro and mouse models used to determine efficacy in vivo. Expert opinion: To date, mannoside optimization has led to a diverse set of small-molecule FimH antagonists with oral bioavailability. With clinical trials already initiated in CD and on the horizon for UTI, it is the authors, opinion that mannosides will be a 'first-in-class' treatment strategy for UTI and CD, and will pave the way for treatment of other Gram-negative bacterial infections.
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Affiliation(s)
| | | | - James W Janetka
- b Department of Biochemistry and Molecular Biophysics , Washington University School of Medicine , Saint Louis , MO , USA
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Trinh TMN, Holler M, Schneider JP, García-Moreno MI, García Fernández JM, Bodlenner A, Compain P, Ortiz Mellet C, Nierengarten JF. Construction of giant glycosidase inhibitors from iminosugar-substituted fullerene macromonomers. J Mater Chem B 2017; 5:6546-6556. [PMID: 32264416 DOI: 10.1039/c7tb01052d] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
An ultra-fast synthetic procedure based on grafting of twelve fullerene macromonomers onto a fullerene hexa-adduct core was used for the preparation of a giant molecule with 120 peripheral iminosugar residues. The inhibition profile of this giant iminosugar ball was evaluated against various glycosidases. In the particular case of the Jack bean α-mannosidase, a dramatic enhancement of the glycosidase inhibitory effect was observed for the giant molecule with 120 peripheral subunits as compared to that of the corresponding mono- and dodecavalent model compounds.
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Affiliation(s)
- Thi Minh Nguyet Trinh
- Laboratoire de Chimie des Matériaux Moléculaires, Université de Strasbourg et CNRS (UMR 7509), Ecole Européenne de Chimie, Polymères et Matériaux, 25 rue Becquerel, 67087 Strasbourg Cedex 2, France.
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Mayer K, Eris D, Schwardt O, Sager CP, Rabbani S, Kleeb S, Ernst B. Urinary Tract Infection: Which Conformation of the Bacterial Lectin FimH Is Therapeutically Relevant? J Med Chem 2017; 60:5646-5662. [PMID: 28471659 DOI: 10.1021/acs.jmedchem.7b00342] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
Frequent antibiotic treatment of urinary tract infections has resulted in the emergence of antimicrobial resistance, necessitating alternative treatment options. One such approach centers around FimH antagonists that block the bacterial adhesin FimH, which would otherwise mediate binding of uropathogenic Escherichia coli to the host urothelium to trigger the infection. Although the FimH lectin can adopt three distinct conformations, the evaluation of FimH antagonists has mainly been performed with a truncated construct of FimH locked in one particular conformation. For a successful therapeutic application, however, FimH antagonists should be efficacious against all physiologically relevant conformations. Therefore, FimH constructs with the capacity to adopt various conformations were applied. By examining the binding properties of a series of FimH antagonists in terms of binding affinity and thermodynamics, we demonstrate that depending on the FimH construct, affinities may be overestimated by a constant factor of 2 orders of magnitude. In addition, we report several antagonists with excellent affinities for all FimH conformations.
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Affiliation(s)
- Katharina Mayer
- Institute of Molecular Pharmacy, Department of Pharmaceutical Sciences, University of Basel , Klingelbergstrasse 50, 4056 Basel, Switzerland
| | - Deniz Eris
- Institute of Molecular Pharmacy, Department of Pharmaceutical Sciences, University of Basel , Klingelbergstrasse 50, 4056 Basel, Switzerland
| | - Oliver Schwardt
- Institute of Molecular Pharmacy, Department of Pharmaceutical Sciences, University of Basel , Klingelbergstrasse 50, 4056 Basel, Switzerland
| | - Christoph P Sager
- Institute of Molecular Pharmacy, Department of Pharmaceutical Sciences, University of Basel , Klingelbergstrasse 50, 4056 Basel, Switzerland
| | - Said Rabbani
- Institute of Molecular Pharmacy, Department of Pharmaceutical Sciences, University of Basel , Klingelbergstrasse 50, 4056 Basel, Switzerland
| | - Simon Kleeb
- Institute of Molecular Pharmacy, Department of Pharmaceutical Sciences, University of Basel , Klingelbergstrasse 50, 4056 Basel, Switzerland
| | - Beat Ernst
- Institute of Molecular Pharmacy, Department of Pharmaceutical Sciences, University of Basel , Klingelbergstrasse 50, 4056 Basel, Switzerland
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Supramolecular Recognition of Escherichia coli Bacteria by Fluorescent Oligo(Phenyleneethynylene)s with Mannopyranoside Termini Groups. SENSORS 2017; 17:s17051025. [PMID: 28471379 PMCID: PMC5469630 DOI: 10.3390/s17051025] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/24/2017] [Revised: 03/15/2017] [Accepted: 04/11/2017] [Indexed: 11/17/2022]
Abstract
Escherichia coli is one the most common bacteria responsible of uropathogenic diseases, which motives the search for rapid and easy methods of detection. By taking advantage of the specific interactions between mannose and type 1 fimbriae, in this work two fluorescent phenyleneethynylene (PE) trimers bearing one or two 4-aminophenyl-α-D-mannopyranoside termini groups were synthesized for the detection of E. coli. Three bacterial strains: ORN 178 (fimbriae I expression), ORN 208 (mutant serotype with no fimbriae expression) and one obtained from a local hospital (SS3) were used. Laser Scanning Confocal Microscopy (LSCM) and Surface Plasmon Resonance (SPR) were applied for the interaction studies following two different approaches: (1) mixing the oligomer solutions with the bacterial suspension, which permitted the observation of stained bacteria and by (2) biosensing as thin films, where bacteria adhered on the surface-functionalized substrate. LSCM allows one to easily visualize that two mannose groups are necessary to have a specific interaction with the fimbriae 1. The sensitivity of SPR assays to E. coli was 104 colony forming unit (CFU)/mL at 50 µL/min flow rate. The combination of PE units with two mannose groups results in a novel molecule that can be used as a specific fluorescent marker as well as a transducer for the detection of E. coli.
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Alvarez Dorta D, Chalopin T, Sivignon A, de Ruyck J, Dumych TI, Bilyy RO, Deniaud D, Barnich N, Bouckaert J, Gouin SG. Physiochemical Tuning of Potent Escherichia coli Anti-Adhesives by Microencapsulation and Methylene Homologation. ChemMedChem 2017; 12:986-998. [PMID: 28257558 DOI: 10.1002/cmdc.201700061] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2017] [Indexed: 11/06/2022]
Abstract
Thiazolylaminomannosides (TazMan) are FimH antagonists with anti-adhesive potential against adherent-invasive Escherichia coli (AIEC) promoting gut inflammation in patients with Crohn's disease. The lead TazMan is highly potent in vitro, but shows limited in vivo efficiency, probably due to low pH stability and water solubility. We recently developed a second generation of stable TazMan, but the anti-adhesive effect was lower than the first. Herein we report a co-crystal structure of the lead TazMan in FimH, revealing that the anomeric NH group and the second thiazole moiety provide a positive hydrogen bonding interaction with a trapped water molecule, and π-stacking with Tyr48 of FimH, respectively. Consequently, we developed NeoTazMan homologated with a methylene group for low-pH and mannosidase stability with a conserved NH group and bearing various heterocyclic aglycones. Microencapsulation of the lead NeoTazMan in γ-cyclodextrin dramatically improved water solubility without disrupting the affinity for FimH or the anti-adhesive effect against AIEC isolated from patients with Crohn's disease.
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Affiliation(s)
- Dimitri Alvarez Dorta
- LUNAM Université, CEISAM, Chimie Et Interdisciplinarité, Synthèse, Analyse, Modélisation, UMR CNRS 6230, UFR des Sciences et des Techniques, 2 rue de la Houssinière, BP 92208, 44322, Nantes Cedex 3, France
| | - Thibaut Chalopin
- LUNAM Université, CEISAM, Chimie Et Interdisciplinarité, Synthèse, Analyse, Modélisation, UMR CNRS 6230, UFR des Sciences et des Techniques, 2 rue de la Houssinière, BP 92208, 44322, Nantes Cedex 3, France
| | - Adeline Sivignon
- Université Clermont Auvergne, Inserm U1071, M2iSH, USC-INRA 2018, 63000, Clermont-Ferrand, France
| | - Jérôme de Ruyck
- Université Lille, Unité de Glycobiologie Structurale et Fonctionnelle, CNRS UMR8576 UGSF, FRABio FR3688, 59000, Lille, France
| | - Tetiana I Dumych
- Danylo Halytsky Lviv National Medical University, Pekarska Str. 69, 79010, Lviv, Ukraine
| | - Rostyslav O Bilyy
- Danylo Halytsky Lviv National Medical University, Pekarska Str. 69, 79010, Lviv, Ukraine
| | - David Deniaud
- LUNAM Université, CEISAM, Chimie Et Interdisciplinarité, Synthèse, Analyse, Modélisation, UMR CNRS 6230, UFR des Sciences et des Techniques, 2 rue de la Houssinière, BP 92208, 44322, Nantes Cedex 3, France
| | - Nicolas Barnich
- Université Clermont Auvergne, Inserm U1071, M2iSH, USC-INRA 2018, 63000, Clermont-Ferrand, France
| | - Julie Bouckaert
- Université Lille, Unité de Glycobiologie Structurale et Fonctionnelle, CNRS UMR8576 UGSF, FRABio FR3688, 59000, Lille, France
| | - Sébastien G Gouin
- LUNAM Université, CEISAM, Chimie Et Interdisciplinarité, Synthèse, Analyse, Modélisation, UMR CNRS 6230, UFR des Sciences et des Techniques, 2 rue de la Houssinière, BP 92208, 44322, Nantes Cedex 3, France
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42
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2- C -Branched mannosides as a novel family of FimH antagonists—Synthesis and biological evaluation. ACTA ACUST UNITED AC 2017. [DOI: 10.1016/j.pisc.2016.10.002] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Rabbani S, Krammer EM, Roos G, Zalewski A, Preston R, Eid S, Zihlmann P, Prévost M, Lensink MF, Thompson A, Ernst B, Bouckaert J. Mutation of Tyr137 of the universal Escherichia coli fimbrial adhesin FimH relaxes the tyrosine gate prior to mannose binding. IUCRJ 2017; 4:7-23. [PMID: 28250938 PMCID: PMC5331462 DOI: 10.1107/s2052252516016675] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2016] [Accepted: 10/18/2016] [Indexed: 05/08/2023]
Abstract
The most prevalent diseases manifested by Escherichia coli are acute and recurrent bladder infections and chronic inflammatory bowel diseases such as Crohn's disease. E. coli clinical isolates express the FimH adhesin, which consists of a mannose-specific lectin domain connected via a pilin domain to the tip of type 1 pili. Although the isolated FimH lectin domain has affinities in the nanomolar range for all high-mannosidic glycans, differentiation between these glycans is based on their capacity to form predominantly hydrophobic interactions within the tyrosine gate at the entrance to the binding pocket. In this study, novel crystal structures of tyrosine-gate mutants of FimH, ligand-free or in complex with heptyl α-d-O-mannopyranoside or 4-biphenyl α-d-O-mannopyranoside, are combined with quantum-mechanical calculations and molecular-dynamics simulations. In the Y48A FimH crystal structure, a large increase in the dynamics of the alkyl chain of heptyl α-d-O-mannopyranoside attempts to compensate for the absence of the aromatic ring; however, the highly energetic and stringent mannose-binding pocket of wild-type FimH is largely maintained. The Y137A mutation, on the other hand, is the most detrimental to FimH affinity and specificity: (i) in the absence of ligand the FimH C-terminal residue Thr158 intrudes into the mannose-binding pocket and (ii) ethylenediaminetetraacetic acid interacts strongly with Glu50, Thr53 and Asn136, in spite of multiple dialysis and purification steps. Upon mutation, pre-ligand-binding relaxation of the backbone dihedral angles at position 137 in the tyrosine gate and their coupling to Tyr48 via the interiorly located Ile52 form the basis of the loss of affinity of the FimH adhesin in the Y137A mutant.
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Affiliation(s)
- Said Rabbani
- Institute of Molecular Pharmacy, Pharmacenter, University of Basel, Klingelbergstrasse 50-70, CH-4056 Basel, Switzerland
| | - Eva-Maria Krammer
- University of Lille, CNRS UMR8576 UGSF (Unité de Glycobiologie Structurale et Fonctionnelle), 59000 Lille, France
- Structure et Fonction des Membranes Biologiques, Université Libre de Bruxelles (ULB), Brussels, Belgium
| | - Goedele Roos
- University of Lille, CNRS UMR8576 UGSF (Unité de Glycobiologie Structurale et Fonctionnelle), 59000 Lille, France
- Structure et Fonction des Membranes Biologiques, Université Libre de Bruxelles (ULB), Brussels, Belgium
| | - Adam Zalewski
- Institute of Molecular Pharmacy, Pharmacenter, University of Basel, Klingelbergstrasse 50-70, CH-4056 Basel, Switzerland
| | - Roland Preston
- Institute of Molecular Pharmacy, Pharmacenter, University of Basel, Klingelbergstrasse 50-70, CH-4056 Basel, Switzerland
| | - Sameh Eid
- Institute of Molecular Pharmacy, Pharmacenter, University of Basel, Klingelbergstrasse 50-70, CH-4056 Basel, Switzerland
| | - Pascal Zihlmann
- Institute of Molecular Pharmacy, Pharmacenter, University of Basel, Klingelbergstrasse 50-70, CH-4056 Basel, Switzerland
| | - Martine Prévost
- Structure et Fonction des Membranes Biologiques, Université Libre de Bruxelles (ULB), Brussels, Belgium
| | - Marc F. Lensink
- University of Lille, CNRS UMR8576 UGSF (Unité de Glycobiologie Structurale et Fonctionnelle), 59000 Lille, France
| | - Andrew Thompson
- Synchrotron SOLEIL, l’Orme de Merisiers, Saint-Aubin BP48, Gif-sur-Yvette CEDEX, France
| | - Beat Ernst
- Institute of Molecular Pharmacy, Pharmacenter, University of Basel, Klingelbergstrasse 50-70, CH-4056 Basel, Switzerland
| | - Julie Bouckaert
- University of Lille, CNRS UMR8576 UGSF (Unité de Glycobiologie Structurale et Fonctionnelle), 59000 Lille, France
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44
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Wang S, Dupin L, Noël M, Carroux CJ, Renaud L, Géhin T, Meyer A, Souteyrand E, Vasseur JJ, Vergoten G, Chevolot Y, Morvan F, Vidal S. Toward the Rational Design of Galactosylated Glycoclusters That Target Pseudomonas aeruginosa Lectin A (LecA): Influence of Linker Arms That Lead to Low-Nanomolar Multivalent Ligands. Chemistry 2016; 22:11785-94. [PMID: 27412649 DOI: 10.1002/chem.201602047] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2016] [Indexed: 02/03/2023]
Abstract
Anti-infectious strategies against pathogen infections can be achieved through antiadhesive strategies by using multivalent ligands of bacterial virulence factors. LecA and LecB are lectins of Pseudomonas aeruginosa implicated in biofilm formation. A series of 27 LecA-targeting glycoclusters have been synthesized. Nine aromatic galactose aglycons were investigated with three different linker arms that connect the central mannopyranoside core. A low-nanomolar (Kd =19 nm, microarray) ligand with a tyrosine-based linker arm could be identified in a structure-activity relationship study. Molecular modeling of the glycoclusters bound to the lectin tetramer was also used to rationalize the binding properties observed.
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Affiliation(s)
- Shuai Wang
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires, Laboratoire de Chimie Organique 2 - Glycochimie UMR 5246, CNRS - Université Claude Bernard Lyon 1, 43 Boulevard du 11 Novembre 1918, 69622, Villeurbanne, France
| | - Lucie Dupin
- Institut des Nanotechnologies de Lyon (INL) - UMR CNRS 5270, Ecole Centrale de Lyon, Université de Lyon, 36 Avenue Guy de Collongue, 69134, Ecully cedex, France
| | - Mathieu Noël
- Institut des Biomolécules Max Mousseron (IBMM) - UMR 5247, CNRS - Université Montpellier - ENSCM, Place Eugène Bataillon, CC1704, 34095, Montpellier cedex 5, France
| | - Cindy J Carroux
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires, Laboratoire de Chimie Organique 2 - Glycochimie UMR 5246, CNRS - Université Claude Bernard Lyon 1, 43 Boulevard du 11 Novembre 1918, 69622, Villeurbanne, France
| | - Louis Renaud
- Institut des Nanotechnologies de Lyon, UMR CNRS 5270, Université Claude Bernard Lyon 1, Université de Lyon, 43 Boulevard du 11 Novembre 1918, 69622, Villeurbanne, France
| | - Thomas Géhin
- Institut des Nanotechnologies de Lyon (INL) - UMR CNRS 5270, Ecole Centrale de Lyon, Université de Lyon, 36 Avenue Guy de Collongue, 69134, Ecully cedex, France
| | - Albert Meyer
- Institut des Biomolécules Max Mousseron (IBMM) - UMR 5247, CNRS - Université Montpellier - ENSCM, Place Eugène Bataillon, CC1704, 34095, Montpellier cedex 5, France
| | - Eliane Souteyrand
- Institut des Nanotechnologies de Lyon (INL) - UMR CNRS 5270, Ecole Centrale de Lyon, Université de Lyon, 36 Avenue Guy de Collongue, 69134, Ecully cedex, France
| | - Jean-Jacques Vasseur
- Institut des Biomolécules Max Mousseron (IBMM) - UMR 5247, CNRS - Université Montpellier - ENSCM, Place Eugène Bataillon, CC1704, 34095, Montpellier cedex 5, France
| | - Gérard Vergoten
- Unité de Glycobiologie Structurale et Fonctionnelle (UGSF) - UMR 8576, CNRS - Université de Lille 1, Cité Scientifique, Avenue Mendeleiev, Bat C9, 59655, Villeneuve d'Ascq cedex, France
| | - Yann Chevolot
- Institut des Nanotechnologies de Lyon (INL) - UMR CNRS 5270, Ecole Centrale de Lyon, Université de Lyon, 36 Avenue Guy de Collongue, 69134, Ecully cedex, France.
| | - François Morvan
- Institut des Biomolécules Max Mousseron (IBMM) - UMR 5247, CNRS - Université Montpellier - ENSCM, Place Eugène Bataillon, CC1704, 34095, Montpellier cedex 5, France.
| | - Sébastien Vidal
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires, Laboratoire de Chimie Organique 2 - Glycochimie UMR 5246, CNRS - Université Claude Bernard Lyon 1, 43 Boulevard du 11 Novembre 1918, 69622, Villeurbanne, France.
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45
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Bhatia S, Camacho LC, Haag R. Pathogen Inhibition by Multivalent Ligand Architectures. J Am Chem Soc 2016; 138:8654-66. [DOI: 10.1021/jacs.5b12950] [Citation(s) in RCA: 133] [Impact Index Per Article: 16.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Sumati Bhatia
- Institut
für Chemie
und Biochemie, Freie Universität Berlin, Takustrasse 3, 14195 Berlin, Germany
| | - Luis Cuellar Camacho
- Institut
für Chemie
und Biochemie, Freie Universität Berlin, Takustrasse 3, 14195 Berlin, Germany
| | - Rainer Haag
- Institut
für Chemie
und Biochemie, Freie Universität Berlin, Takustrasse 3, 14195 Berlin, Germany
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Abellán Flos M, García Moreno MI, Ortiz Mellet C, García Fernández JM, Nierengarten JF, Vincent SP. Potent Glycosidase Inhibition with Heterovalent Fullerenes: Unveiling the Binding Modes Triggering Multivalent Inhibition. Chemistry 2016; 22:11450-60. [DOI: 10.1002/chem.201601673] [Citation(s) in RCA: 59] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2016] [Indexed: 12/24/2022]
Affiliation(s)
- Marta Abellán Flos
- Département de Chimie, Laboratoire de Chimie Bio-Organique; University of Namur (UNamur); rue de Bruxelles 61 5000 Namur Belgium
| | - M. Isabel García Moreno
- Departamento de Química Orgánica; Facultad de Química; Universidad de Sevilla; C/Prof. García González 1 41012 Sevilla Spain
| | - Carmen Ortiz Mellet
- Departamento de Química Orgánica; Facultad de Química; Universidad de Sevilla; C/Prof. García González 1 41012 Sevilla Spain
| | - Jose Manuel García Fernández
- Instituto de Investigaciones Químicas (IIQ); CSIC - Universidad de Sevilla; Av. Américo Vespucio 49, Isla de la Cartuja 41092 Sevilla Spain
| | - Jean-Francois Nierengarten
- Laboratoire de Chimie des Matériaux Moléculaires; Université de Strasbourg et CNRS (UMR 7509); Ecole Européenne de Chimie, Polymères et Matériaux; 25 rue Becquerel 67087 Strasbourg France
| | - Stéphane P. Vincent
- Département de Chimie, Laboratoire de Chimie Bio-Organique; University of Namur (UNamur); rue de Bruxelles 61 5000 Namur Belgium
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Sikorska C. When a nanoparticle meets a superhalogen: a case study with C60 fullerene. Phys Chem Chem Phys 2016; 18:18739-49. [PMID: 27346461 DOI: 10.1039/c6cp00380j] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The ability of a selected nanoparticle to form stable systems with superhalogens (i.e. AlF4, AlCl4, MgF3, MgCl3, LiF2, LiCl2, and LiI2) is examined on the basis of theoretical considerations supported by ab initio calculations. It is demonstrated that the C60 fullerene molecule should form stable and strongly bound (C60)˙(+)(superhalogen)(-) radical cation salts when combined with an appropriately chosen superhalogen radical (acting as an oxidizing agent). The conclusion is supported by providing: (i) the structural deformation of superhalogens and C60 nanoparticles upon ionization, (ii) predicted charge flow between the fullerene and each superhalogen (which allows estimating the amount of electron density withdrawn from the C60 molecule during the ionization process), (iii) the localization of the spin density distribution, and (iv) the interaction energies for the compounds obtained both at the B3LYP/6-31+G(d) level and at the B3LYP-D3/6-31+G(d) level. Solvent effects have been considered in the present study by means of the polarizable continuum model. It is found that the stability of C60/superhalogen species can be improved in solvents. We believe that the results provided in this contribution may likely be of prospective relevance in the future studies on the issue of binding and removal of this potentially risky nanoparticle.
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Affiliation(s)
- Celina Sikorska
- Laboratory of Molecular Modeling, Department of Theoretical Chemistry, Faculty of Chemistry, University of Gdansk, Wita Stwosza 63, 80-308 Gdansk, Poland.
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Chalopin T, Brissonnet Y, Sivignon A, Deniaud D, Cremet L, Barnich N, Bouckaert J, Gouin SG. Inhibition profiles of mono- and polyvalent FimH antagonists against 10 different Escherichia coli strains. Org Biomol Chem 2016; 13:11369-75. [PMID: 26440382 DOI: 10.1039/c5ob01581b] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Mono- and polyvalent ligands with strong affinities for the mannose-binding adhesin FimH were synthesised, and their anti-adhesive properties against ten E. coli strains were compared in two cell-based assays. The compounds were assessed against the non-pathogenic E. coli K12 and nine strains isolated by coproculture or from patients with osteoarticular infections (OIs), Crohn's disease (CD) and urinary tract infections (UTIs). The results showed that the compounds could inhibit the whole set of bacterial strains but with marked differences in terms of effective concentrations. The relative inhibitory potency of the monovalent compounds was also conserved for the ten strains and in the two assays. These results clearly suggest that a potent monovalent anti-adhesive assessed on a single E. coli strain will probably be effective on a broad range of strains and may treat diverse E. coli infections (OIs, CD and UTIs). In contrast, the polyvalent compounds showed a significant strain-dependancy in preventing E. coli attachment to intestinal cells. The multivalent antiadhesive effect may therefore vary depending on the E. coli strain tested.
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Affiliation(s)
- T Chalopin
- LUNAM Université, CEISAM, Chimie Et Interdisciplinarité, Synthèse, Analyse, Modélisation, UMR CNRS 6230, UFR des Sciences et des Techniques, 2 rue de la Houssinière, BP 92208, 44322 Nantes Cedex 3, France.
| | - Y Brissonnet
- LUNAM Université, CEISAM, Chimie Et Interdisciplinarité, Synthèse, Analyse, Modélisation, UMR CNRS 6230, UFR des Sciences et des Techniques, 2 rue de la Houssinière, BP 92208, 44322 Nantes Cedex 3, France.
| | - A Sivignon
- Clermont Université, UMR 1071 Inserm/Université d'Auvergne, 63000 Clermont-Ferrand, France and INRA, Unité Sous Contrat 2018, 63000 Clermont-Ferrand, France
| | - D Deniaud
- LUNAM Université, CEISAM, Chimie Et Interdisciplinarité, Synthèse, Analyse, Modélisation, UMR CNRS 6230, UFR des Sciences et des Techniques, 2 rue de la Houssinière, BP 92208, 44322 Nantes Cedex 3, France.
| | - L Cremet
- Université de Nantes, UFR de Médecine, EA3826, Thérapeutiques cliniques et expérimentales des infections, 1 rue G. Veil, 44000 Nantes, France
| | - N Barnich
- Clermont Université, UMR 1071 Inserm/Université d'Auvergne, 63000 Clermont-Ferrand, France and INRA, Unité Sous Contrat 2018, 63000 Clermont-Ferrand, France
| | - J Bouckaert
- Unité de Glycobiologie Structurale et Fonctionnelle (UGSF), UMR 8576 du CNRS, Université de Lille 1, F-59655 Villeneuve d'Ascq Cedex, France
| | - S G Gouin
- LUNAM Université, CEISAM, Chimie Et Interdisciplinarité, Synthèse, Analyse, Modélisation, UMR CNRS 6230, UFR des Sciences et des Techniques, 2 rue de la Houssinière, BP 92208, 44322 Nantes Cedex 3, France.
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49
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Sattin S, Bernardi A. Glycoconjugates and Glycomimetics as Microbial Anti-Adhesives. Trends Biotechnol 2016; 34:483-495. [DOI: 10.1016/j.tibtech.2016.01.004] [Citation(s) in RCA: 53] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2015] [Revised: 01/15/2016] [Accepted: 01/15/2016] [Indexed: 12/31/2022]
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50
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Torosyan SA, Mikheev VV, Biglova YN, Miftakhov MS. Synthesis of chloramphenicol conjugate with fullerene C60. RUSSIAN JOURNAL OF ORGANIC CHEMISTRY 2016. [DOI: 10.1134/s1070428016040217] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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