Heterocycles as supramolecular handles for crystal engineering: a case study with 7-(diethylamino)coumarin derivatives

In this study, we present the synthesis and detailed solid-state structural characterization of a Schiff-base-bridged derivative of 7-(diethylamino)coumarin (7-DAC), a molecular block displaying repetitive aggregation modes in the solid state despite being attached to broadly different molecular frameworks. To map the supramolecular habits of this unconventional moiety, we carry out a comparative analysis of the crystal packing in a curated dataset of 50 molecules decorated with the 7-DAC group, retrieved from the literature. We uncover that self-recognition of the 7-DAC moiety has two main components: a set of directional C-H⋯O interactions between neighboring coumarins, and antiparallel dipole-dipole interactions, taking the form of distinct π-stacking modes. The pendant 7-diethylamino group is key to the behavior of 7-DAC, favoring its solubilization through its conformational flexibility in solution, while in the crystalline matrix, it acts as a structural spacer that favors π-stacking interactions. Our findings present a comprehensive analysis of the preferential arrangements of the 7-DAC fragment in various (supra)molecular scenarios, confirming that it is (i) a mobile but mostly planar group, (ii) a group prone to antiparallel aggregation, and (iii) up to 90% likely to pack via π-stacking supported by hydrogen-bonding interactions. These findings enrich the palette of supramolecular motifs available for the bottom-up design of organic materials and their programmed construction.

Small-Molecule Fluorescent Probes for Binding- and Activity-Based Sensing of Redox-Active Biological Metals

Although transition metals constitute less than 0.1% of the total mass within a human body, they have a substantial impact on fundamental biological processes across all kingdoms of life. Indeed, these nutrients play crucial roles in the physiological functions of enzymes, with the redox properties of many of these metals being essential to their activity. At the same time, imbalances in transition metal pools can be detrimental to health. Modern analytical techniques are helping to illuminate the workings of metal homeostasis at a molecular and atomic level, their spatial localization in real time, and the implications of metal dysregulation in disease pathogenesis. Fluorescence microscopy has proven to be one of the most promising non-invasive methods for studying metal pools in biological samples. The accuracy and sensitivity of bioimaging experiments are predominantly determined by the fluorescent metal-responsive sensor, highlighting the importance of rational probe design for such measurements. This review covers activity- and binding-based fluorescent metal sensors that have been applied to cellular studies. We focus on the essential redox-active metals: iron, copper, manganese, cobalt, chromium, and nickel. We aim to encourage further targeted efforts in developing innovative approaches to understanding the biological chemistry of redox-active metals.

Fabrication of a New Coumarin Based Fluorescent "turn-on" Probe for Distinct and Sequential Recognition of Al3+ and F- Along With Its Application in Live Cell Imaging

A new coumarin based fluorescent switch PCEH is fabricated which displays high selective sensing towards Al3+ among other metal cations at physiological pH. On gradual addition of Al3+, PCEH shows a brilliant "turn-on" emission enhancement in MeOH/H2O (4/1, v/v) solution. This new fluorescent switch is proven to be a reversible probe by gradual addition of F- into the PCEH-Al3+ solution. Detection limit as well as binding constant values are calculated to be in the order of 10-9 M and 104 M-1 respectively. We have also explored its potential as a biomarker in the application of live cell imaging using breast cancer cells (MDA-MB-231 cell).

Investigation on non-radioactive behavior of an acylhydrazone-based fluorescent probe: Coexistence of PET and TICT mechanisms

A fluorescent probe (E)-((2,4-dihydroxybenzyl)diazenyl)(pyridin-2-yl)methanone (HL) to effectively and selectively detect Al³⁺ was designed and synthesized in the experiment. Herein, we explained the excited state dynamics mechanism of HL by using density functional theory (DFT) and time-dependent density functional theory (TD-DFT). The potential energy surfaces (PESs) proved that the excited-state intramolecular proton transfer (ESIPT) process hardly occurs due to the high reaction barriers, so the fluorescence quenching behavior of HL was not based on ESIPT. The frontier molecular orbitals (FMOs) and spectral properties were analyzed to better understand the origination of fluorescence quenching. It was found that an electron on C = N in HL could be transferred to the fluorophore during excitation in the absence of Al³⁺, accompanied by the PET process. The excited state could undergo a twisted intramolecular charge transfer (TICT) process, releasing non-radiative decay. After binding to Al³⁺, the photo-induced electron transfer (PET) process has no longer occurred, and the TICT process is eliminated, resulting in a significant fluorescence enhancement. Therefore, the calculation results well explain the quenching and enhancement behaviors of fluorescence before and after the reaction with Al³⁺.

Dual-channel recognition of Al3+ and Cu2+ ions using a chiral pyrene-based fluorescent sensor

Specific recognition between Al3+ and Cu2+ has been achieved based on the new mechanism of Cu2+ detection by pyrene dimerization.

A salicylaldehyde benzoyl hydrazone based near-infrared probe for copper(ii) and its bioimaging applications

Developing highly sensitive and selective methods for Cu²⁺ detection in living systems is of great significance in clinical copper-related disease diagnosis. In this work, a near infrared (NIR) fluorescent probe, CySBH, with a salicylaldehyde benzoyl hydrazone group as a selective and sensitive receptor for Cu²⁺ was designed and synthesized. The specific coordination of the salicylaldehyde benzoyl hydrazone group in CySBH with Cu²⁺ can induce a distinct quench of the fluorescence intensity, allowing for real-time tracking of Cu²⁺. We have demonstrated that CySBH could rapidly recognize Cu²⁺ with good selectivity and high sensitivity. Moreover, on the basis of low cell cytotoxicity, the probe was used to visualize Cu²⁺ in two cell lines by fluorescence imaging. Furthermore, CySBH can also be used to monitor Cu²⁺in vivo due to its NIR emission properties. These overall results illustrate that the NIR fluorescent probe CySBH provides a novel approach for the selective and sensitive monitoring of Cu²⁺ in living systems.

A near infrared fluorescent probe utilizing the salicylaldehyde benzoyl hydrazone group as the Cu²⁺ receptor was developed and used to selectively and sensitively monitor Cu²⁺ in living systems.

A Benzothiazole-Based Fluorescence Turn-on Sensor for Copper(II)

A new benzothiazole-based chemosensor BTN (1-((Z)-(((E)-3-methylbenzo[d]thiazol-2(3H)-ylidene)hydrazono)methyl)naphthalen-2-ol) was synthesized for the detection of Cu²⁺. BTN could detect Cu²⁺ with "off-on" fluorescent response from colorless to yellow irrespective of presence of other cations. Limit of detection for Cu²⁺ was determined to be 3.3 μM. Binding ratio of BTN and Cu²⁺ turned out to be a 1:1 with the analysis of Job plot and ESI-MS. Sensing feature of Cu²⁺ by BTN was explained with theoretical calculations, which might be owing to internal charge transfer and chelation-enhanced fluorescence processes.

Naphthalimide-phenanthroimidazole incorporated new fluorescent sensor for "turn-on" Cu2+ detection in living cancer cells

In recent years, fluorescent sensors have emerged as attractive imaging probes due to their distinct responses toward bio-relevant metal ions. However, the bioimaging application main barrier is the 'turn-off' response toward paramagnetic metal ions such as Cu²⁺ under physiological conditions. Herein, we report a new sensor (2-methyl(4-bromo-N-ethylpiperazinyl-1,8-naphthalimido)-4-(1H-phenanthro[9,10-d]imidazole-2-yl) phenol)NPP with multifunctional (Naphthalimide, Piperazine, Phenanthroimidazole) units for fluorescent and colourimetric detection of Cu²⁺ in an aqueous medium. Both absorption and fluorescence spectral titration strategies were used to monitor the Cu²⁺-sensing property of NPP. The NPP displays a weak emission at ca. 455 nm, which remarkably enhances (⁓3.2-fold) upon selective binding of Cu²⁺ over a range of metal ions, including other paramagnetic metal ions (Mn²⁺, Fe³⁺, Co²⁺). The stoichiometry, binding constant (K_a) and the LOD (limit of detection) of NPP toward Cu²⁺ ions were found to be 1:1, 5.0 (± 0.2) × 10⁴ M^-1 and 6.5 (± 0.4) × 10^-7 M, respectively. We have also used NPP as a fluorescent probe to detect Cu²⁺ in live (human cervical HeLa) cancer cells. The emission intensity of NPP was almost recovered in HeLa cells by incubating 'in situ' the derived Cu²⁺ complex (NPP-Cu²⁺) in the presence of a benchmark chelating agent such as EDTA (ethylenediaminetetraacetate). The fluorescent emission of NPP was reverted significantly in each cycle upon sequencial addition of Cu²⁺ and EDTA to the NPP solution. Overall, NPP is a novel, simple, economic and portable sensor that can detect Cu²⁺ in biological and environmental scenarios.

Coumarin-Based Reversible Fluorescent Probe for Selective Detection of Cu2+ in Living Cells

Copper ion plays an important role in many biological processes in human body. H₂S is considered as the third gasses transmitter after carbon monoxide and nitric oxide. Here a novel ICT-based fluorescent ON-OFF-ON probe for Cu²⁺ and H₂S detection was developed. Selectivity and sensitivity of probe was confirmed in aqueous Tris-HCl buffer (10 mM, pH 7.4, containing 90% acetonitrile). Probe DF-CU shows high selectivity over other analytes. The degree of fluorescence quenching is linearly associated with the concentration of Cu²⁺ (R² = 0.9919). The limit of detection (LOD, calculated according to the 3σ/slope) for Cu²⁺ was 6.4 μM. Probe can work in almost all pH. The probe shows a very fast response to Cu²⁺ (within 10 s). Its response to copper ion could be reversed by H₂S. The complex of probe with Cu²⁺ could be used for H₂S detection. Furthermore, this ON-OFF-ON fluorescent probe successfully applied in the living cells for the detection of Cu²⁺ and H₂S.

A diaminomaleonitrile-appended BODIPY chemosensor for the selective detection of Cu2+ via oxidative cyclization and imaging in SiHa cells and zebrafish

A specific Cu²⁺ sensor, 2-amino-3-(BODIPYmethyleneamino)maleonitrile (BDM), was established by a simple dehydration between BODIPY and diaminomaleonitrile. Cu²⁺ could be recognized by BDM over other competing metal ions in acetonitrile with distinct fluorescence emission signal response. Upon the addition of Cu²⁺ to BDM in acetonitrile, the maximum absorption at approximately 530 nm on the longer wavelength side was quenched, and the emission at 530 nm was ignited simultaneously. The fluorescence intensity enhancement could reach a maximum of 204 times the intensity of the BDM blank solution. The fluorescence "off-on" effect is established according to the Cu²⁺-induced fast intramolecular oxidative cyclization reaction, which could be deduced from the formation of an imidazole ring appended to the cyclization product (2-BODIPY-1H-imidazole-4,5-dicarbonitrile, BMC). Single-crystal structure analysis of the sensor BDM and cyclization product BMC further demonstrated this oxidative cyclization. Finally, the Cu²⁺ recognition property of BDM was validated in SiHa cells and living zebrafish. Additionally, the blood-brain barrier of the zebrafish can be penetrated by the BDM dye and the neuron cells in the brain were stained.

Highly Selective Fluorescence Sensor Based on Graphene Quantum Dots for Sulfamethoxazole Determination

In our research, a reliable fluorescence sensor for the detection of sulfamethoxazole (SMZ) was developed. This method relies on graphene quantum dots (GQDs) entrapped in a silica molecularly imprinted polymer (GQDs@SMIP), which was synthesized by the polymerization using GQDs, SMZ, tetraethoxysilane (TEOS) and 3-aminopropyltriethoxysilane (APTES) as fluorescence material, template, cross-linker, and functional monomers, respectively. The GQDs@SMIP was characterized by fluorometry, Fourier-transform infrared spectroscopy, transmission and scanning electron microscopies, X-ray photoelectron spectroscopy, and powder X-ray diffraction. The GQDs@SMIP exhibited a good capacity to absorb SMZ from solution, which resulted in the quenching of the GQD fluorescence intensity. The intensity of GQDs@SMIP decreased linearly with the SMZ concentration in the range of 1 to 100 µM with a correlation coefficient of 0.99537. In addition, the fluorescence responses of GQDs@SMIP to interfering substances were investigated. The results indicated that there was no effect of interfering substances on SMZ detection. Thus, the highly selective GQDs@SMIP fluorescence sensor is an effective and promising device for SMZ detection and analysis.

Enhanced selectivity, cellular uptake, and in vitro activity of an intrinsically fluorescent copper-tirapazamine nanocomplex for hypoxia targeted therapy in prostate cancer

In the present work, a copper-tirapazamine (TPZ) nanocomplex [Cu(TPZ)₂] was synthesized for selective hypoxia-targeted therapy. The nanocomplex revealed a crystalline form, and exhibited higher lipophilicity, compared to TPZ. Furthermore, its stability was confirmed in different media, with minimum dissociation in serum (∼20% up to 72 h). In contrast to other hypoxia-targeted agents, our intrinsically fluorescent nanocomplex offered an invaluable tool to monitor its cellular uptake and intracellular distribution under both normoxia and hypoxia. The conferred higher cellular uptake of the nanocomplex, especially under hypoxia, and its biocompatible reductive potential resulted in superior hypoxia selectivity in two prostate cancer (PC) cell lines. More promisingly, the nanocomplex showed higher potency in three-dimensional tumor spheroids, compared to TPZ, due to its slower metabolism, and probably deeper penetration in tumor spheroids. Interestingly, the nuclear localization of the intact nanocomplex, combined with its higher DNA binding affinity, as evidenced by the DNA binding assay, resulted in significant S-phase cell-cycle arrest, followed by apoptosis in the three-dimensional spheroid model. In conclusion, the presented findings suggested that the Cu(TPZ)₂ nanocomplex can be a promising hypoxia-targeted therapeutic, which could potentiate the efficacy of the existing chemo- and radiotherapy in PC.

Retinal-based polyene fluorescent probe for selectively detection of Cu2+ in physiological saline and serum

Retinal is a flexible natural chromophore and widely present in organisms. The slender conjugated polyene structure retinal is conducive to entering protein structure. In this work, a novel turn-on fluorescent probe for Cu²⁺ based on retinal and phenylenediamine was designed and synthesized. The probe achieved recognition of copper ions in human serum complex protein environment. Furthermore, the high sensitivity, selectivity for Cu²⁺ and the sensing mechanism was also investigated.

Simultaneous dual-colour tracking lipid droplets and lysosomes dynamics using a fluorescent probe

After entering a cell, most small molecule fluorescent probes are dispersed in the cytoplasm before they then accumulate in a specific organelle or subcellular zone. Molecules that can enter two or more organelles with high selectivity are all but unknown. In this work, we report a naphthalimide-based fluorescent probe, NIM-7, that allows lipid droplets and lysosomes to be labelled simultaneously and with high specificity. These subcellular entities can then be visualized readily through yellow and red fluorescence, using different excitation and detection channels. NIM-7 allows 3D imaging and quantitative visualizing of lipid droplets and lysosomes. It is also able to track simultaneously the movement of lipid droplets and lysosomes in real-time. We also report here that NIM-7 can be used to image both different cell lines and zebrafish embryos.

Coumarin–graphene turn-on fluorescent probe for femtomolar level detection of copper(ii)

A novel coumarin–graphene moiety was suggested as an excellent optical sensor for Cu²⁺ ions.

Self-assembly and photo-responsive behavior of bis-terpyridyl Eu3+-complex L1

In the present paper, a bis-terpyridyl Eu³⁺ complex (bis-terpyridyl Eu3+-complex L1) was synthesized through the coordination between Eu³⁺ and a compound L1 with an azobenzene-functionalized chain between the two terpyridine ligands.

A fluorescent and colorimetric probe based on naphthalene diimide and its high sensitivity towards copper ions when used as test strips

Herein, a red fluorescent and colorimetric probe (NDI-Py) based on naphthalene diimide was designed and synthesized, which exhibited rapid response, high sensitivity and selectivity towards copper ions, and the detection limit was as low as 0.97 μM in solution. Furthermore, NDI-Py demonstrated a strong red emission in the aggregated state because of its non-planar structure. Thus, it can act as a test strip to conveniently monitor copper ions with the detection limit as low as 2.0 μM.

A red fluorescent and colorimetric probe (NDI-Py) exhibited high selectivity and sensitivity towards copper ions both in solution and on silica gel plates.

A new high selective and sensitive turn-on fluorescent and ratiometric absorption chemosensor for Cu2+ based on benzimidazole in aqueous solution and its application in live cell

A new benzimidazole base turn-on fluorescent and ratiometric absorption chemosensor (L) bearing bidentate ligand for detection of Cu²⁺ was designed and synthesized. Fluorescence and UV-vis spectra studies demonstrated that L can detect Cu²⁺ ions in aqueous solution using fluorescence enhancement and ratiometric absorption sensing over a wide pH range. Both fluorescent and ratiometric absorption sensing of L for Cu²⁺ possessed high selectivity and sensitivity over other competitive metal ions and had low detection limit. Job's plot, mass spectra and DFT calculation indicated the sensing mechanism is the complex formation between L and Cu²⁺ with 1:2 stoichiometry. Fluorescence images of HepG2 in the absence and presence of Cu²⁺ displayed L had cell permeability and detection ability for Cu²⁺ in live cells.

A Dual-Target Fluorescent Probe with Response-Time Dependent Selectivity for Cd2+ and Cu2

A novel fluorescent probe (NT) was developed by merging 2-hydrazinylbenzothiazole with 2-hydroxy-1-naphthaldehyde for the detection of Cd²⁺ and Cu²⁺. The probe alone is almost nonfluorescent due to the isomerization of C=N in the excited state. The addition of Cd²⁺ can cause an immediate strong green fluorescence owing to the suppression of C=N isomerization by Cd²⁺-coordination. Furthermore, NT gives a delayed turn-on fluorescence response to Cu²⁺ although it is a vigorous fluorescence quencher, which was thanks to the inhibition of the electron transfer between excited fluorophore and paramagnetic Cu²⁺ by sulfur donor. Based on fluorescence spectra and ESI-MS analysis, the binding modes between NT and Cd²⁺/Cu²⁺ were proposed.

A novel terephthalaldehyde based turn-on fluorescent chemosensor for Cu2+ and its application in imaging of living cells

A new terephthaldehyde-based chemosensor 1 bearing an aminophenol recognition unit has been synthesized and applied to the fluorescent sensing of metal ions. Molecular system 1 acts as a highly selective and sensitive fluorescence turn-on sensor for Cu²⁺. The sensing mechanism has been explored. It is proposed that Cu²⁺ binds with the imine and hydroxyl moiety of 1 in 1 : 2 binding stoichiometry, thereby enhancing the fluorescence at 386 nm. The detection limit and association constant (K_a) of 1 with Cu²⁺ were found to be 0.62 μM and 6.67 × 10⁴ M^-1, respectively. Chemosensor 1 has shown excellent specificity towards Cu²⁺ and has been successfully applied to the determination of Cu²⁺ in live L929 cells.

Ultrasensitive and highly selective detection of Cu2+ ions based on a new carbazole-Schiff

A new chemosensor for Cu²⁺ based on Schiff base with high sensitivity and selectivity was designed and synthesized. The fluorescence intensity of the chemosensor in CH₃CN solution was enhanced 160-fold after the addition of 10 equiv. Cu²⁺ over other metal ions. In addition, it also facilitates colorimetric detection for Cu²⁺ in CH₃CN solution. The chemosensor displayed low detection limit and fast response time to Cu²⁺.

Cytidine-stabilized copper nanoclusters as a fluorescent probe for sensing of copper ions and hemin

We reported a sensitive and selective fluorescence “turn on–off” strategy for detection of Cu²⁺ and hemin, respectively. The fluorescence “turn on” sensor for Cu²⁺ detection had a wide linear range of 0.05–2.0 μM with a limit of detection (LOD) of 0.032 μM, and the fluorescence “turn off” sensor for hemin detection possessed a wide linear range of 0.05–4.0 μM with an LOD of 0.045 μM. The sensor for Cu²⁺ or hemin exhibited high selectivity over other possible substances. In addition, it was demonstrated by using various analytical characterization techniques that the fluorescence “turn on” sensor for Cu²⁺ was constructed on the basis of the formation of water-soluble fluorescent copper nanoclusters (CuNCs), and the fabrication of the fluorescence “turn off” sensor for hemin was predominately based on the inner filter effect of hemin on the fluorescence of the CuNCs. Finally, the proposed fluorescence “turn on–off” sensor system was successfully applied for detection of Cu²⁺ in lake water samples and hemin in duck blood samples.

A sensitive and selective fluorescence “turn on–off” strategy for simultaneous detection of Cu²⁺ and hemin was proposed on the basis of the formation of fluorescent CuNCs and the inner filter effect of hemin on the fluorescence of the CuNCs.

A novel, highly sensitive, selective, reversible and turn-on chemi-sensor based on Schiff base for rapid detection of Cu(II)

In this work, a novel optical fluoro-chemisensor was designed and synthesized for copper (II) ions detection. The sensor film is created by embedded N,N-Bis(2-hydroxo-5-bromobenzyl)ethylenediamine in poly vinyl chloride (PVC) film in presence of dioctyl phthalate (DOP) as plasticizer. The receptor Schiff base reveals "off-on" mode with high selectivity, significant sensitivity to Cu(II) ions. The selectivity of optical sensor for Cu(II) ions is the result of chelation enhanced fluorescence (CHEF). The optimal conditions of pH and response time at which higher efficiency of sensor film is performed was found to be 6.8 and 2.48min. The possible interference of other metal ions in solution was examined in presence of different types of metal ions. This film shows high selectivity and ultra-sensitivity with low detection limit LOD (1.1×10^-8M). Thus, these considerable properties make it viable to monitor copper metal ions within very low concentration range (0-15×10^-6M Cu(II)) and highly selective even in the presence of different types of metal ions. The sensor reversibility was achieved by utilizing EDTA solution with concentration of 0.1M solution.

Spirolactam capped cyanine dyes for designing NIR probes to target multiple metal ions

This work reports cyanine based spirocyclic metal ion probes, showing a fluorescence turn-on response to various metal ions in the near-infrared spectral region.

A triple action chemosensor for Cu2+by chromogenic, Cr3+by fluorogenic and CN−by relay recognition methods with bio-imaging of HeLa cells

A rhodamine-B based triple action chemosensor has been developed with recycling ability, and its application towards bio-imaging of HeLa cells is studied. It selectively senses Cu²⁺, Cr³⁺and CN⁻ions in aqueous medium.

Functionalized calix[4]arene as a colorimetric dual sensor for Cu(ii) and cysteine in aqueous media: experimental and computational study

The sensors developed detect Cu²⁺and the metal complex recognizes cysteine, detectable by the naked eye, and DFT calculations corroborate the experimental results.