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Peng M, Siebert DL, Engqvist MKM, Niemeyer CM, Rabe KS. Modeling-Assisted Design of Thermostable Benzaldehyde Lyases from Rhodococcus erythropolis for Continuous Production of α-Hydroxy Ketones. Chembiochem 2021; 23:e202100468. [PMID: 34558792 PMCID: PMC9293332 DOI: 10.1002/cbic.202100468] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2021] [Revised: 09/23/2021] [Indexed: 12/18/2022]
Abstract
Enantiopure α-hydroxy ketones are important building blocks of active pharmaceutical ingredients (APIs), which can be produced by thiamine-diphosphate-dependent lyases, such as benzaldehyde lyase. Here we report the discovery of a novel thermostable benzaldehyde lyase from Rhodococcus erythropolis R138 (ReBAL). While the overall sequence identity to the only experimentally confirmed benzaldehyde lyase from Pseudomonas fluorescens Biovar I (PfBAL) was only 65 %, comparison of a structural model of ReBAL with the crystal structure of PfBAL revealed only four divergent amino acids in the substrate binding cavity. Based on rational design, we generated two ReBAL variants, which were characterized along with the wild-type enzyme in terms of their substrate spectrum, thermostability and biocatalytic performance in the presence of different co-solvents. We found that the new enzyme variants have a significantly higher thermostability (up to 22 °C increase in T50 ) and a different co-solvent-dependent activity. Using the most stable variant immobilized in packed-bed reactors via the SpyCatcher/SpyTag system, (R)-benzoin was synthesized from benzaldehyde over a period of seven days with a stable space-time-yield of 9.3 mmol ⋅ L-1 ⋅ d-1 . Our work expands the important class of benzaldehyde lyases and therefore contributes to the development of continuous biocatalytic processes for the production of α-hydroxy ketones and APIs.
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Affiliation(s)
- Martin Peng
- Karlsruhe Institute of Technology (KIT), Institute for Biological Interfaces (IBG 1), Hermann-von-Helmholtz-Platz 1, 76344, Eggenstein-Leopoldshafen, Germany
| | - Dominik L Siebert
- Karlsruhe Institute of Technology (KIT), Institute for Biological Interfaces (IBG 1), Hermann-von-Helmholtz-Platz 1, 76344, Eggenstein-Leopoldshafen, Germany
| | - Martin K M Engqvist
- Chalmers University of Technology, Department of Biology and Biological Engineering, Division of Systems and Synthetic Biology, Kemivägen 10, 412 96, Gothenburg, Sweden
| | - Christof M Niemeyer
- Karlsruhe Institute of Technology (KIT), Institute for Biological Interfaces (IBG 1), Hermann-von-Helmholtz-Platz 1, 76344, Eggenstein-Leopoldshafen, Germany
| | - Kersten S Rabe
- Karlsruhe Institute of Technology (KIT), Institute for Biological Interfaces (IBG 1), Hermann-von-Helmholtz-Platz 1, 76344, Eggenstein-Leopoldshafen, Germany
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2
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Di Carmine G, Bortolini O, Massi A, Müller M, Bernacchia G, Fantin G, Ragno D, Giovannini PP. Enzymatic Cross‐Benzoin‐Type Condensation of Aliphatic Aldehydes: Enantioselective Synthesis of 1‐Alkyl‐1‐hydroxypropan‐2‐ones and 1‐Alkyl‐1‐hydroxybutan‐2‐ones. Adv Synth Catal 2018. [DOI: 10.1002/adsc.201800357] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Graziano Di Carmine
- Dipartimento di Scienze Chimiche e FarmaceuticheUniversità di Ferrara Via Fossato di Mortara 17 44121 Ferrara Italy
| | - Olga Bortolini
- Dipartimento di Scienze Chimiche e FarmaceuticheUniversità di Ferrara Via Fossato di Mortara 17 44121 Ferrara Italy
| | - Alessandro Massi
- Dipartimento di Scienze Chimiche e FarmaceuticheUniversità di Ferrara Via Fossato di Mortara 17 44121 Ferrara Italy
| | - Michael Müller
- Institute of Pharmaceutical SciencesAlbert-Ludwigs-Universität Freiburg Albertstrasse 25 79104 Freiburg Germany
| | - Giovanni Bernacchia
- Dipartimento di Scienze della Vita e BiotecnologieUniversità di Ferrara Via L. Borsari 46 44121 Ferrara Italy
| | - Giancarlo Fantin
- Dipartimento di Scienze Chimiche e FarmaceuticheUniversità di Ferrara Via Fossato di Mortara 17 44121 Ferrara Italy
| | - Daniele Ragno
- Dipartimento di Scienze Chimiche e FarmaceuticheUniversità di Ferrara Via Fossato di Mortara 17 44121 Ferrara Italy
| | - Pier Paolo Giovannini
- Dipartimento di Scienze Chimiche e FarmaceuticheUniversità di Ferrara Via Fossato di Mortara 17 44121 Ferrara Italy
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3
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Hernández K, Parella T, Petrillo G, Usón I, Wandtke CM, Joglar J, Bujons J, Clapés P. Intramolecular Benzoin Reaction Catalyzed by Benzaldehyde Lyase from Pseudomonas Fluorescens Biovar I. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201702278] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Affiliation(s)
- Karel Hernández
- Catalonia Institute for Advanced Chemistry; Dept. Chemical Biology & Molecular Modelling; IQAC-CSIC; Jordi Girona 18-26 08034 Barcelona Spain
| | - Teodor Parella
- Servei de Ressonáncia Magnética Nuclear; Universitat Autònoma de Barcelona; Bellaterra Spain
| | - Giovanna Petrillo
- Dept. Chemical Biology & Molecular Modelling; Instituto de Química Avanzada de Cataluña; IQAC-CSIC; Instituto de Biología Molecular de Barcelona; IBMB-CSIC; Spain
| | - Isabel Usón
- Instituto de Biología Molecular de Barcelona; IBMB-CSIC; Institució Catalana de Recerca i Estudis Avançats (ICREA); Spain
| | - Claudia M. Wandtke
- Institut für Anorganische Chemie; Universität Göttingen; Göttingen Germany
| | - Jesús Joglar
- Catalonia Institute for Advanced Chemistry; Dept. Chemical Biology & Molecular Modelling; IQAC-CSIC; Jordi Girona 18-26 08034 Barcelona Spain
| | - Jordi Bujons
- Catalonia Institute for Advanced Chemistry; Dept. Chemical Biology & Molecular Modelling; IQAC-CSIC; Jordi Girona 18-26 08034 Barcelona Spain
| | - Pere Clapés
- Catalonia Institute for Advanced Chemistry; Dept. Chemical Biology & Molecular Modelling; IQAC-CSIC; Jordi Girona 18-26 08034 Barcelona Spain
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Hernández K, Parella T, Petrillo G, Usón I, Wandtke CM, Joglar J, Bujons J, Clapés P. Intramolecular Benzoin Reaction Catalyzed by Benzaldehyde Lyase from Pseudomonas Fluorescens Biovar I. Angew Chem Int Ed Engl 2017; 56:5304-5307. [PMID: 28387004 DOI: 10.1002/anie.201702278] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2017] [Revised: 03/22/2017] [Indexed: 01/09/2023]
Abstract
Intramolecular benzoin reactions catalyzed by benzaldehyde lyase from Pseudomonas fluorescens biovar I (BAL) are reported. The structure of the substrates envisaged for this reaction consists of two benzaldehyde derivatives linked by an alkyl chain. The structural requirements needed to achieve the intramolecular carbon-carbon bond reaction catalyzed by BAL were established. Thus, a linker consisting of a linear alkyl chain of three carbon atoms connected through ether-type bonds to the 2 and 2' positions of two benzaldehyde moieties, which could be substituted with either Cl, Br, or OCH3 at either the 3 and 3' or 5 and 5' positions, were suitable substrates for BAL. Reactions with 61-84 % yields of the intramolecular product and ee values between 64 and 98 %, were achieved.
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Affiliation(s)
- Karel Hernández
- Catalonia Institute for Advanced Chemistry, Dept. Chemical Biology & Molecular Modelling, IQAC-CSIC, Jordi Girona 18-26, 08034, Barcelona, Spain
| | - Teodor Parella
- Servei de Ressonáncia Magnética Nuclear, Universitat Autònoma de Barcelona, Bellaterra, Spain
| | - Giovanna Petrillo
- Dept. Chemical Biology & Molecular Modelling, Instituto de Química Avanzada de Cataluña, IQAC-CSIC, Instituto de Biología Molecular de Barcelona, IBMB-CSIC, Spain
| | - Isabel Usón
- Instituto de Biología Molecular de Barcelona, IBMB-CSIC, Institució Catalana de Recerca i Estudis Avançats (ICREA), Spain
| | - Claudia M Wandtke
- Institut für Anorganische Chemie, Universität Göttingen, Göttingen, Germany
| | - Jesús Joglar
- Catalonia Institute for Advanced Chemistry, Dept. Chemical Biology & Molecular Modelling, IQAC-CSIC, Jordi Girona 18-26, 08034, Barcelona, Spain
| | - Jordi Bujons
- Catalonia Institute for Advanced Chemistry, Dept. Chemical Biology & Molecular Modelling, IQAC-CSIC, Jordi Girona 18-26, 08034, Barcelona, Spain
| | - Pere Clapés
- Catalonia Institute for Advanced Chemistry, Dept. Chemical Biology & Molecular Modelling, IQAC-CSIC, Jordi Girona 18-26, 08034, Barcelona, Spain
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5
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Regio- and Stereoselective Aliphatic-Aromatic Cross-Benzoin Reaction: Enzymatic Divergent Catalysis. Chemistry 2016; 22:13999-14005. [DOI: 10.1002/chem.201602084] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2016] [Indexed: 11/07/2022]
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Giovannini PP, Bortolini O, Massi A. Thiamine-Diphosphate-Dependent Enzymes as Catalytic Tools for the Asymmetric Benzoin-Type Reaction. European J Org Chem 2016. [DOI: 10.1002/ejoc.201600228] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Pier Paolo Giovannini
- Department of Chemical and Pharmaceutical Sciences; University of Ferrara; 17, Via Fossato di Mortara 44121 Ferrara Italy
| | - Olga Bortolini
- Department of Chemical and Pharmaceutical Sciences; University of Ferrara; 17, Via Fossato di Mortara 44121 Ferrara Italy
| | - Alessandro Massi
- Department of Chemical and Pharmaceutical Sciences; University of Ferrara; 17, Via Fossato di Mortara 44121 Ferrara Italy
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Petrenz A, María PDD, Ramanathan A, Hanefeld U, Ansorge-Schumacher MB, Kara S. Medium and reaction engineering for the establishment of a chemo-enzymatic dynamic kinetic resolution of rac-benzoin in batch and continuous mode. ACTA ACUST UNITED AC 2015. [DOI: 10.1016/j.molcatb.2014.10.011] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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8
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Hernández K, Parella T, Joglar J, Bujons J, Pohl M, Clapés P. Expedient Synthesis of
C
‐Aryl Carbohydrates by Consecutive Biocatalytic Benzoin and Aldol Reactions. Chemistry 2015; 21:3335-46. [DOI: 10.1002/chem.201406156] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2014] [Indexed: 01/21/2023]
Affiliation(s)
- Karel Hernández
- Biotransformation and Bioactive Molecules Group, Instituto de Química Avanzada de Cataluña, IQAC‐CSIC. Jordi Girona 18‐26, 08034 Barcelona (Spain), Fax: (+34) 932045904
| | - Teodor Parella
- Servei de Ressonància Magnètica Nuclear. Dept Química, Universitat Autònoma de Barcelona, 08193 Bellaterra, Cerdanyola del Vallès (Spain)
| | - Jesús Joglar
- Biotransformation and Bioactive Molecules Group, Instituto de Química Avanzada de Cataluña, IQAC‐CSIC. Jordi Girona 18‐26, 08034 Barcelona (Spain), Fax: (+34) 932045904
| | - Jordi Bujons
- Biotransformation and Bioactive Molecules Group, Instituto de Química Avanzada de Cataluña, IQAC‐CSIC. Jordi Girona 18‐26, 08034 Barcelona (Spain), Fax: (+34) 932045904
| | - Martina Pohl
- IBG‐1: Biotechnologie, Forschungszentrum Jülich GmbH, 52425 Jülich (Germany)
| | - Pere Clapés
- Biotransformation and Bioactive Molecules Group, Instituto de Química Avanzada de Cataluña, IQAC‐CSIC. Jordi Girona 18‐26, 08034 Barcelona (Spain), Fax: (+34) 932045904
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Jin MY, Kim SM, Mao H, Ryu DH, Song CE, Yang JW. Chemoselective and repetitive intermolecular cross-acyloin condensation reactions between a variety of aromatic and aliphatic aldehydes using a robust N-heterocyclic carbene catalyst. Org Biomol Chem 2014; 12:1547-50. [PMID: 24452293 DOI: 10.1039/c3ob42486c] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We found that chemoselectivity of the crossed acyloin product is controlled by the adjustment of the aromatic aldehyde/aliphatic aldehyde ratio. Moreover, we observed the persistent catalytic activity of the homogeneous NHC catalyst in a solution due to NHC catalyst robustness.
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Affiliation(s)
- Ming Yu Jin
- Department of Chemistry, Sungkyunkwan University, Suwon 440-746, Republic of Korea
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Müller CR, Pérez-Sánchez M, Domínguez de María P. Benzaldehyde lyase-catalyzed diastereoselective C-C bond formation by simultaneous carboligation and kinetic resolution. Org Biomol Chem 2014; 11:2000-4. [PMID: 23280121 DOI: 10.1039/c2ob27344f] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Enzymes create chiral microenvironments that may simultaneously generate several stereogenic centers in the same catalytic cycle, broadening the possibilities of biocatalysis. Benzaldehyde lyase (BAL) affords highly diastereoselective α-hydroxy-ketones by simultaneously performing ligation and kinetic resolution of a racemic aldehyde. Thus, to the well-known enantioselective BAL-carboligation of aldehydes (C-C bond formation), another property, namely diastereoselectivity, is added in this paper for the first time.
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Affiliation(s)
- Christoph R Müller
- Institut für Technische und Makromolekulare Chemie (ITMC), RWTH Aachen University, Worringerweg 1, 52074 Aachen, Germany
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11
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Purification and covalent immobilization of benzaldehyde lyase with heterofunctional chelate-epoxy modified magnetic nanoparticles and its carboligation reactivity. ACTA ACUST UNITED AC 2013. [DOI: 10.1016/j.molcatb.2013.05.023] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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12
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Hailes HC, Rother D, Müller M, Westphal R, Ward JM, Pleiss J, Vogel C, Pohl M. Engineering stereoselectivity of ThDP-dependent enzymes. FEBS J 2013; 280:6374-94. [DOI: 10.1111/febs.12496] [Citation(s) in RCA: 66] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2013] [Revised: 08/16/2013] [Accepted: 08/21/2013] [Indexed: 01/12/2023]
Affiliation(s)
- Helen C. Hailes
- Department of Chemistry; Christopher Ingold Laboratories; University College London; UK
| | - Dörte Rother
- IBG-1: Biotechnology; Forschungszentrum Jülich Germany
| | - Michael Müller
- Institute of Pharmaceutical Sciences; University of Freiburg; Germany
| | | | - John M. Ward
- Department of Biochemical Engineering; University College London; UK
| | - Jürgen Pleiss
- Institute of Technical Biochemistry; University of Stuttgart; Germany
| | - Constantin Vogel
- Institute of Technical Biochemistry; University of Stuttgart; Germany
| | - Martina Pohl
- IBG-1: Biotechnology; Forschungszentrum Jülich Germany
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Pérez-Sánchez M, Müller CR, Domínguez de María P. Multistep Oxidase-Lyase Reactions: Synthesis of Optically Active 2-Hydroxyketones by Using Biobased Aliphatic Alcohols. ChemCatChem 2013. [DOI: 10.1002/cctc.201300093] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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Müller M, Sprenger GA, Pohl M. CC bond formation using ThDP-dependent lyases. Curr Opin Chem Biol 2013; 17:261-70. [PMID: 23523314 DOI: 10.1016/j.cbpa.2013.02.017] [Citation(s) in RCA: 77] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2012] [Revised: 02/02/2013] [Accepted: 02/14/2013] [Indexed: 01/17/2023]
Abstract
The present review summarizes recent achievements in enzymatic thiamine catalysis during the past three years. With well-established enzymes such as BAL, PDC and TK new reactions have been identified and respective variants were prepared, which enable access to stereoisomeric products. Further we highlight recent progress with 'new' ThDP-dependent enzymes like MenD and PigD, which catalyze the Stetter-like 1,4 addition of aldehydes and YerE, which is the first known ThDP-dependent enzyme accepting ketones as acceptors.
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Affiliation(s)
- Michael Müller
- Institute of Pharmaceutical Sciences, Albert-Ludwigs-Universität Freiburg, Albertstr. 25, 79104 Freiburg, Germany.
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Carboligation reactivity of benzaldehyde lyase (BAL, EC 4.1.2.38) covalently attached to magnetic nanoparticles. ACTA ACUST UNITED AC 2013. [DOI: 10.1016/j.tetasy.2013.01.022] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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16
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Natalia D, Kohlmann C, Ansorge-Schumacher MB, Greiner L. Direct spectrophotometric assay for benzaldehyde lyase activity. BIOTECHNOLOGY RESEARCH INTERNATIONAL 2011; 2011:478925. [PMID: 21804944 PMCID: PMC3142707 DOI: 10.4061/2011/478925] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/23/2011] [Revised: 05/25/2011] [Accepted: 06/08/2011] [Indexed: 11/20/2022]
Abstract
Benzaldehyde lyase from Pseudomonas fluorescens Biovar I. (BAL, EC 4.1.2.38) is a versatile catalyst for the organic synthesis of chiral α-hydroxy ketones. To allow fast assessment of enzyme activity, a direct spectrophotometric assay is desirable. Here, a new robust and easy-to-handle assay based on UV absorption is presented. The assay developed is based on the ligation of the α-hydroxy ketone (R)-2,2′-furoin from 2-furaldehyde. A robust assay with direct monitoring of the product is facilitated with a convenient concentration working range minimising experimental associated with low concentrations.
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Affiliation(s)
- Dessy Natalia
- ITMC, RWTH Aachen University, Worringerweg 1, 52056 Aachen, Germany
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