New NIR spectroscopic probe with a large Stokes shift for Hg2+ and Ag+ detection and living cells imaging

A new near-infrared (NIR) probe based on a coumarinyl ligand (CL) was designed and synthesized. The probe CL can be used for simultaneous fluorescent turn-on and colorimetric detection of Hg²⁺ and Ag⁺ in ethanol/water medium. Colorless solution of probe CL changed to light yellow or dark yellow after addition of Hg²⁺ or Ag⁺ ions. Meanwhile the maximum absorption band shifted from 379 nm to 404 nm and the intensity increased enormously (for Hg²⁺) or moderately (for Ag⁺). Probe CL displayed an extraordinarily large Stokes shift of 316 nm and addition of Hg²⁺ or Ag⁺ to probe CL induced enhancement in the intensity of fluorescence emission at 695 nm by 15 or 8 fold. The detection limit of CL for Hg²⁺ and Ag⁺ ions is 0.83 and 8.8 μM, respectively. The applicable pH for sensing Hg²⁺ by probe CL is in a broad range of 2-12. Application of probe CL for in vitro U87MG cell imaging to detect Hg²⁺ ions was confirmed.

Wide-field determination of aqueous mercury(II) based on tail-extensible DNA fluorescent probe with tunable dynamic range

Mercury (Hg) is one of the most hazardous pollutants, widely distributed in water, atmosphere, and soil, while the Hg contents from different sources are greatly different. Until now, numerous reported methods are only suitable for a kind of sample because they cannot reconcile sensitivity and linear range. In this work, a tail-extensible DNA fluorescent probe for "turn on" detection of Hg²⁺ with tunable dynamic range and high sensitivity was developed, which was based on segmental hybridization between silver nanoclusters (AgNCs)-covered DNA and different guanine-rich DNAs. By adding adenine-guanine-cytosine (AGC) base repeats as a tail of the guanine-rich DNA, the formation constant of T-Hg²⁺-T complex was effectively modulated within two orders of magnitude. Based on it, a tunable dynamic range from 0.035 to 0.2 pM to 8.0-120.0 pM was achieved by combining four fluorescent probes with different tail lengths. The Hg²⁺contents from different sources were successfully measured. This evidenced the proposed sensor's application toward wide-field detection, which is useful for the direct and objective comparison of results from different sources, and therefore providing a way for solving the shortcomings of reported methods for Hg²⁺ detection. Additionally,this present method is simple, cost-effective and time-saving, ultrasensitive and highly selective, which is favorable for expanding its applications and subsequent mercury pollution control.

Ultrasensitive detection of trace Hg2+ by SERS aptasensor based on dual recycling amplification in water environment

Due to the nonbiodegradability and accumulation of mercury ion, even in extremely small amount, it will cause varying degrees of harm to environment and human health. Although researchers have developed many strategies to detect and monitor trace Hg²⁺, only a few provide sensitivities of less than 1.0 pM. Surface Enhanced Raman Spectroscopy (SERS) is a common method to detect mercury ion due to its high sensitivity, rapid detection and easy operation. In this work, we report a new SERS aptasensor based on dual recycling amplification for the detection of trace mercury ion, which combines SERS with nucleic acid signal amplification through functional aptamer and elaborately designed hairpin DNA. Under the optimal experimental conditions, this SERS aptasensor exhibits excellent selectivity and high sensitivity. A linear range (0.2-125 fM) and a low detection limit (0.11 fM) are obtained. By using specific aptamers, the strategy will provide a new idea for the trace detection of toxic contaminants in water environment.

Enzymatic formation of consecutive thymine–HgII–thymine base pairs by DNA polymerases

Ten consecutive T–Hg^II–T base pairs were successfully formed by DNA polymerase-catalyzed primer extension reactions.

A highly sensitive and low-background fluorescence assay for pesticides residues based on hybridization chain reaction amplification assisted by magnetic separation

Due to the concern over food safety, it is important to detect the pesticides residues in agricultural products. Here, a highly sensitive and low background fluorescent strategy for the detection of pesticides residues has been developed. The fluorescence intensity of N-methyl mesoporphyrin IX (NMM) binding G-quadruplex could be turn off because of inhibiting effect of the pesticides on the acetylcholinesterase (AChE) activity. For that, four single-stranded DNAs (named linker, trigger, H1 and H2, respectively) are rational designed and T-Hg-T mismatches duplex DNAs as a recognizer combined with the separation of magnetic beads. The design of hybridization chain reaction (HCR) amplification strategy assisted by magnetic separation has been adopted to improve the detection sensitivity. In the presence of pesticides, the amount of the thiol group generated by hydrolysis reaction of acetylcholine (ACh) is reduced, lead to release of less trigger DNA. Therefor subsequent HCR process is retarded with decreased fluorescence intensity. The reduced fluorescence intensity has a quantitative relationship with the pesticide concentration. The limit of detection of chlorpyrifos was estimated to be 2.0 ng ml-1. It has been applied to detect the pesticides residues in real samples.

Ultrasensitive colorimetric detection of Hg2+ ions based on enhanced catalytic performance of gold amalgam dispersed in channels of rose petals

We herein present a simple, low-cost, and ultrasensitive colorimetric sensing strategy for the detection of mercury ions (Hg²⁺) that takes advantage of the natural pore structure in rose petals to encapsulate gold nanoparticles (AuNPs).

Development of a portable device for Ag+ sensing using CdTe QDs as fluorescence probe via an electron transfer process

Ag⁺ as one of the most commonly seen toxic heavy metal ions is involved in numerous vital biological processes, which would cause fatal damages and environmental contamination when Ag⁺ is excessive. In the present work, CdTe quantum dots (QDs) with green, orange, and red emission capped by mercaptoacetic acid (TGA) were synthesized at one time by controlling the synthesis time and utilized for Ag⁺ detection. Both fluorescence spectral red-shift and intensity decrease could be used for Ag⁺ discrimination. Fluorescence lifetime, Zeta potential, and XRD, etc. were carried out to analyze the detection mechanism. Results displayed that surface passivation and electron transfer due to binding effects of Ag⁺ to Te atom on traps of QDs could be relied on to explain the sensing mechanism. Additionally, in accordance with PCA analysis, Ag⁺ could be also be successfully differentiated from Hg²⁺ and the other metal ions. Importantly, a home-made portable device based on a 32 bit embed Micro Control Unit (MCU) system was first proposed for Ag⁺ detection. The power supply system adopt the mini-sized lithium cell instead of the power supply system, which ensure its practical applicability. The relative position of light source and detector is set at 90° to minimize the interference. According to the detection results, the linear detection range using the device was from 5 nM to 200 nM (with a larger coefficient of determination, R²), and the detection limit was calculated to be about 5 nM, which indicated that this proposed method and device could fulfil the practical application requirements.

Metal-Polydopamine Framework as an Effective Fluorescent Quencher for Highly Sensitive Detection of Hg(II) and Ag(I) Ions through Exonuclease III Activity

In this paper, we propose a metal-polydopamine (MPDA) framework with a specific molecular probe which appears to be the most promising approach to a strong fluorescence quencher. The MPDA framework quenching ability toward various organic fluorophore such as aminoethylcoumarin acetate, 6-carboxyfluorescein (FAM), carboxyteramethylrhodamine, and Cy5 are used to establish a fluorescent biosensor that can selectively recognize Hg²⁺ and Ag⁺ ions. The fluorescent quenching efficiency was sufficient to achieve more than 96%. The MPDA framework also exhibits different affinities with ssDNA and dsDNA. In addition, the FAM-labeled ssDNA was adsorbed onto the MPDA framework, based on their interaction with the complex formed between MPDA frameworks/ssDNA taken as a sensing platform. By taking advantage of this sensor, highly sensitive and selective determination of Hg²⁺ and Ag⁺ ions is achieved through exonuclease III signal amplification activity. The detection limits of Hg²⁺ and Ag⁺ achieved to be 1.3 and 34 pM, respectively, were compared to co-existing metal ions and graphene oxide-based sensors. Furthermore, the potential applications of this study establish the highly sensitive fluorescence detection targets in environmental and biological fields.

Label-Free Biosensor Using a Silver Specific RNA-Cleaving DNAzyme Functionalized Single-Walled Carbon Nanotube for Silver Ion Determination

Silver, a very common heavy metal, has been employed in electronics, medicine, jewelry, and catalysis due to its excellent chemical and physical characteristics. Silver-containing wastes can cause environmental pollution, so it is vital to monitor the Ag(I) concentration. Here, a label-free biosensor was developed for the Ag(I) detection, which used single-walled carbon nanotubes/field effect transistor (SWNTs/FET) to functionalize with a specific DNAzyme, containing an Agzyme and a complementary strand DNA (CS-DNA) embedded an RNA-base. The CS-DNA was covalently immobilized on the SWNTs’ surface through peptide bonds, and then combined with the Agzyme. When Ag(I) was bound with the Agzyme, the CS-DNA can be cleaved at the RNA site efficiently. The cleaved DNAzyme induced a remarkable change in the electrical conductivity of SWNTs. The performances of DNAzyme/SWNTs/FET were investigated using different spectroscopy and electrochemical methods. Under the optimized parameters, DNAzyme/SWNTs/FET presented a high sensitivity and selectivity towards Ag(I), in which the linear response range is 10 pM to 10⁶ pM and the limit of detection is 5 pM(S/N = 3). Additionally, the prepared biosensor was applied to measure the Ag(I) concentration in the water sample with good results.

Fluorescent probes for the simultaneous detection of multiple analytes in biology

This review identifies and discusses fluorescent sensors that are capable of simultaneously reporting on the presence of two analytes for biological application.

Poly-cytosine-mediated nanotags for SERS detection of Hg2

Highly sensitive and selective detection of heavy metal ions, such as Hg²⁺, is of great importance because the contamination of heavy metal ions has been a serious threat to human health. Herein, we have developed poly-cytosine (polyC)-mediated surface-enhanced Raman scattering (SERS) nanotags as a sensor system for rapid, selective, and sensitive detection of Hg²⁺ based on thymidine-Hg²⁺-thymidine (T-Hg²⁺-T) coordination and polyC-mediated Raman activity. The SERS nanotags exploit the mismatched T-T base pairs to capture Hg²⁺ form T-Hg²⁺-T bridges, which induce the aggregation of nanotags giving rise to the drastic amplification in the SERS signals. Moreover, this polyC not only provides the anchoring function to induce the formation of intrinsic silver-cytosine coordination but also engineers the Raman-activity of SERS nanotags by mediating its length. As a result, the polyC-mediated SERS nanotags show an excellent response for Hg²⁺ in the concentration range from 0.1 to 1000 nM and good selectivity over other metal ions. Given its simple principle and easy operation, the polyC-mediated SERS nanotags, therefore, could serve as a promising sensor for practical use.

A naked-eye colorimetric sensor for Hg2+ monitoring with cascade signal amplification based on target-induced conjunction of split DNAzyme fragments

We developed a naked-eye colorimetric sensor for Hg²⁺ monitoring with cascade signal amplification based on DNAzyme fragments and gold nanoparticles.

Rapid and label-free strategy for the sensitive detection of Hg2+ based on target-triggered exponential strand displacement amplification

A rapid and label-free strategy for sensitive detection of Hg²⁺ is developed based on target-triggered exponential strand displacement amplification (eSDA).

Synthesis of a novel electrode material containing phytic acid-polyaniline nanofibers for simultaneous determination of cadmium and lead ions

The development of nanostructured conducting polymers based materials for electrochemical applications has attracted intense attention due to their environmental stability, unique reversible redox properties, abundant electron active sites, rapid electron transfer and tunable conductivity. Here, a phytic acid doped polyaniline nanofibers based nanocomposite was synthesized using a simple and green method, the properties of the resulting nanomaterial was characterized by electrochemical impedance spectroscopy (EIS), Fourier transform infrared spectroscopy (FT-IR), scanning electron microscopy (SEM), and energy dispersive spectroscopy (EDS). A glassy carbon electrode modified by the nanocomposite was evaluated as a new platform for the simultaneous detection of trace amounts of Cd²⁺ and Pb²⁺ using differential pulse anodic stripping voltammetry (DPASV). The synergistic contribution from PANI nanofibers and phytic acid enhances the accumulation efficiency and the charge transfer rate of metal ions during the DPASV analysis. Under the optimal conditions, good linear relationships were obtained for Cd²⁺ in a range of 0.05-60 μg L^-1, with the detection limit (S/N = 3) of 0.02 μg L^-1, and for Pb²⁺ in a range of 0.1-60 μg L^-1, with the detection limit (S/N = 3) of 0.05 μg L^-1. The new electrode was successfully applied to real water samples for simultaneous detection of Cd²⁺ and Pb²⁺ with good recovery rates. Therefore, the new electrode material may be a capable candidate for the detection of trace levels of heavy metal ions.

Recent Progresses in Nanobiosensing for Food Safety Analysis

With increasing adulteration, food safety analysis has become an important research field. Nanomaterials-based biosensing holds great potential in designing highly sensitive and selective detection strategies necessary for food safety analysis. This review summarizes various function types of nanomaterials, the methods of functionalization of nanomaterials, and recent (2014-present) progress in the design and development of nanobiosensing for the detection of food contaminants including pathogens, toxins, pesticides, antibiotics, metal contaminants, and other analytes, which are sub-classified according to various recognition methods of each analyte. The existing shortcomings and future perspectives of the rapidly growing field of nanobiosensing addressing food safety issues are also discussed briefly.

Label-free and dual-amplified electrochemical detection of Hg2+ based on self-assembled DNA nanostructures and target-triggered exonuclease cleavage activity

An electrochemical biosensor for Hg²⁺ detection via HCR and Hg²⁺-triggered Exo III-assisted target recycling for signal amplification.

Electrochemiluminescent molecular logic gates based on MCNTs for the multiplexed analysis of mercury(ii) and silver(i) ions

In this paper, logic gates with electrochemiluminescence (ECL) signal as outputs were constructed based on the use of the thymine (T)-rich (S₁) or cytosine (C)-rich (S₂) oligonucleotides for the selective analysis of mercury ions (Hg²⁺) or silver ions (Ag⁺).

Fidelity quantification of mercury(ii) ion via circumventing biothiols-induced sequestration in enzymatic amplification system

A fidelity quantification of mercury(ii) ion based on nucleic acids amplification is developedviacircumventing biothiols-induced sequestration.

Solvent-dependent fluorescent-colorimetric probe for dual monitoring of Al3+ and Cu2+ in aqueous solution: an application to bio-imaging

A solvent-dependent reversible fluorescent-colorimetric bis-iminopyridyl Schiff base receptor (N¹E,N⁴E)-N¹,N⁴-bis(quinolin-4-ylmethylene)benzene-1,4-diamine (L) has been developed for the first time for sensitive and selective determination of Al³⁺ and Cu²⁺ in aqueous solution.

Metal ion triggers for reversible switching of DNA polymerase

A new strategy to modulate DNA polymerase activity in a reversible and switchable manner was devised by using the novel interactions between DNA bases and metal ions.

A label-free G-quadruplex-based mercury detection assay employing the exonuclease III-mediated cleavage of T-Hg2+-T mismatched DNA

We report herein the use of an exonuclease III and G-quadruplex probe to construct a G-quadruplex-based luminescence detection platform for Hg2+. Unlike common DNA-based Hg2+ detection methods, when using the dsDNA probe to monitor the hairpin formation, the intercalation of the dsDNA probe may be influenced by the distortion of dsDNA. This 'mix-and-detect' methodology utilized the G-quadruplex probe as the signal transducer and is simple, rapid, convenient to use and can detect down to 20 nM of Hg2+.

Isothermal Amplification of Nucleic Acids

Isothermal amplification of nucleic acids is a simple process that rapidly and efficiently accumulates nucleic acid sequences at constant temperature. Since the early 1990s, various isothermal amplification techniques have been developed as alternatives to polymerase chain reaction (PCR). These isothermal amplification methods have been used for biosensing targets such as DNA, RNA, cells, proteins, small molecules, and ions. The applications of these techniques for in situ or intracellular bioimaging and sequencing have been amply demonstrated. Amplicons produced by isothermal amplification methods have also been utilized to construct versatile nucleic acid nanomaterials for promising applications in biomedicine, bioimaging, and biosensing. The integration of isothermal amplification into microsystems or portable devices improves nucleic acid-based on-site assays and confers high sensitivity. Single-cell and single-molecule analyses have also been implemented based on integrated microfluidic systems. In this review, we provide a comprehensive overview of the isothermal amplification of nucleic acids encompassing work published in the past two decades. First, different isothermal amplification techniques are classified into three types based on reaction kinetics. Then, we summarize the applications of isothermal amplification in bioanalysis, diagnostics, nanotechnology, materials science, and device integration. Finally, several challenges and perspectives in the field are discussed.

Germanium-doped carbon dots as a new type of fluorescent probe for visualizing the dynamic invasions of mercury(II) ions into cancer cells

Carbon dots doped with germanium (GeCDs) were firstly prepared by a new simple 15 min carbonation synthesis route, exhibiting excitation-independent photoluminescence (PL), which could avoid autofluorescence in bioimaging applications. The as-prepared GeCDs have low cell toxicity, good biocompatibility, high intracellular delivery efficiency, stability and could be applied for detection of mercury(II) ions with excellent selectivity in complicated medium. It is to be noted that the as-prepared GeCDs used as a new type of probe for visualization of dynamic invasions of mercury(II) ions into Hep-2 cells display greatly different properties from most of the previously reported CDs which are regularly responsive to iron ions. All the results suggest that the GeCDs can be employed for visualization and monitoring of the significant physiological changes of living cells induced by Hg(2+).

Lable-free quadruple signal amplification strategy for sensitive electrochemical p53 gene biosensing

A versatile label-free quadruple signal amplification biosensing platform for p53 gene (target DNA) detection was proposed. The chitosan-graphene (CS-GR) modified electrode with excellent electron transfer ability could provide a large specific surface for high levels of AuNPs-DNA attachment. The large amount of AuNPs could immobilize more capture probes and enhance the electrochemical signal with the excellent electrocatalytic activity. Furthermore, with the assist of N.BstNB I (the nicking endonuclease), target DNA could be reused and more G-quadruplex-hemin DNAzyme could be formed, allowing significant signal amplification in the presence of H2O2. Such strategy can enhance the oxidation-reduction reaction of adsorbed methylene blue (MB) and efficiently improve the sensitivity of the proposed biosensor. The morphologies of materials and the stepwise biosensor were characterized by scanning electron microscopy (SEM), transmission electron microscopy (TEM) and cyclic voltammetry (CV). Differential pulse voltammetry (DPV) signals of MB provided quantitative measures of the concentrations of target DNA, with a linear calibration range of 1.0 × 10(-15)-1.0 × 10(-9)M and a detection limit of 3.0 × 10(-16)M. Moreover, the resulting biosensor also exhibited good specificity, acceptable reproducibility and stability, indicating that the present strategy was promising for broad potential application in clinic assay.

Functional nucleic acid-based sensors for heavy metal ion assays

Heavy metal contaminants such as lead ions (Pb(2+)), mercury ions (Hg(2+)) and silver ions (Ag(+)) can cause significant harm to humans and generate enduring bioaccumulation in ecological systems. Even though a variety of methods have been developed for Pb(2+), Hg(2+) and Ag(+) assays, most of them are usually laborious and time-consuming with poor sensitivity. Due to their unique advantages of excellent catalytic properties and high affinity for heavy metal ions, functional nucleic acids such as DNAzymes and aptamers show great promise in the development of novel sensors for heavy metal ion assays. In this review, we summarize the development of functional nucleic acid-based sensors for the detection of Pb(2+), Hg(2+) and Ag(+), and especially focus on two categories including the direct assay and the amplification-based assay. We highlight the emerging trends in the development of sensitive and selective sensors for heavy metal ion assays as well.

Triple Raman Label-Encoded Gold Nanoparticle Trimers for Simultaneous Heavy Metal Ion Detection

Here, a triple Raman label-encoded gold nanoparticle (AuNP) trimer is fabricated for heavy metal ion detection. In the presence of target ions, the gold nanoparticles modified with different Raman labels are assembled into trimers and produce different enhancements of Raman reporters, which are functionalized as Raman probes for simultaneous silver and mercury ion detection. Under optimized conditions, the limits of detection of Ag(+) and Hg(2+) reach 8.42 × 10(-12) and 16.78 × 10(-12) m, respectively.

Fluorescent detection of Hg2+ and Pb2+ using GeneFinder™ and an integrated functional nucleic acid

This paper reports a simple fluorescent assay for the determination of Hg(2+) and Pb(2+) by using a DNA intercalator GeneFinder™ (GF) and an integrated functional nucleic acid (FNA). In the absence of Hg(2+) and Pb(2+), GF intercalated with the FNA and released moderate strong fluorescence. While in the presence of Hg(2+) or Pb(2+), the FNA would be induced to form T-Hg(2+)-T or G-quadruplex structure, interacted with which the GF would exhibit extremely strong or very weak fluorescence. By monitoring the fluorescence changes upon addition of these two ions, the Hg(2+) and Pb(2+) could be selectively detected as low as 3.23 ppb and 2.62 ppb. As the main advantage of this assay is simplicity and the feasibility was demonstrated by detecting Hg(2+) and Pb(2+) in spiked water samples, this assay holds great potential for the development of a cost effective and useful tool for environmental monitoring.

Electrochemical detection of aqueous Ag+ based on Ag+-assisted ligation reaction

In this work, a novel strategy to fabricate a highly sensitive and selective biosensor for the detection of Ag(+) is proposed. Two DNA probes are designed and modified on a gold electrode surface by gold-sulfur chemistry and hybridization. In the presence of Ag(+), cytosine-Ag(+)-cytosine composite forms and facilitates the ligation event on the electrode surface, which can block the release of electrochemical signals labeled on one of the two DNA probes during denaturation process. Ag(+) can be sensitively detected with the detection limit of 0.1 nM, which is much lower than the toxicity level defined by U.S. Environmental Protection Agency. This biosensor can easily distinguish Ag(+) from other interfering ions and the performances in real water samples are also satisfactory. Moreover, the two DNA probes are designed to contain the recognition sequences of a nicking endonuclease, and the ligated DNA can thus be cleaved at the original site. Therefore, the electrode can be regenerated, which allows the biosensor to be reused for additional tests.

Binary DNA hairpin-based colorimetric biochip for simultaneous detection of Pb2+ and Hg2+ in real-world samples

A novel microarray-format colorimetric biochip was constructed for simultaneously detecting the trace amounts of Pb²⁺ and Hg²⁺ in various real-world samples.

Structures, physicochemical properties, and applications of T–HgII–T, C–AgI–C, and other metallo-base-pairs

In this feature article, recent progress and future perspectives of metal-mediated base-pairs such as T–Hg(ii)–T and C–Ag(i)–C are presented.

A bio-inspired sensor coupled with a bio-bar code and hybridization chain reaction for Hg2+ assay

In this article, a bio-inspired DNA sensor is developed, which coupled with bio-bar code and hybridization chain reaction. This bio-inspired sensor has high sensitivity to Hg²⁺, and has been used to assay Hg²⁺ in the extraction of traditional Chinese medicine.