A small molecule two-photon fluorescent probe for intracellular sodium ions

Recent synthetic strategies for N-arylation of pyrrolidines: a potential template for biologically active molecules

The chemistry of nitrogen-containing heterocyclic compounds has been a multifaceted area of research for an extended period due to their varied therapeutic and biological significance. N-Aryl pyrrolidine formed by condensation of aryl group with nitrogen atom of pyrrolidine is present in a wide array of compounds. Various significant activities shown by N-arylated pyrrolidine include anti-Alzheimer, antihypoxic, anticancer, plant activator, analgesic effect, and hepatitis C inhibitor. This review summarizes different synthetic approaches, e.g., transition-metal catalyzed and transition-metal-free synthesis, decarboxylation reaction, reductive amination, nucleophilic cyclization, Ullmann-Goldberg amidation, Buchwald-Hartwig reaction, Chan-Evans-Lam coupling, addition to benzyne, multistep reaction, green synthesis, rearrangement reaction, and multicomponent reaction, to afford the derivatives of N-aryl pyrrolidine. It encompasses synthetic strategies documented from 2015 to 2023.

Fluorescent probes for the detection of disease-associated biomarkers

Fluorescent probes have emerged as indispensable chemical tools to the field of chemical biology and medicine. The ability to detect intracellular species and monitor physiological processes has not only advanced our knowledge in biology but has provided new approaches towards disease diagnosis. In this review, we detail the design criteria and strategies for some recently reported fluorescent probes that can detect a wide range of biologically important species in cells and in vivo. In doing so, we highlight the importance of each biological species and their role in biological systems and for disease progression. We then discuss the current problems and challenges of existing technologies and provide our perspective on the future directions of the research area. Overall, we hope this review will provide inspiration for researchers and prove as useful guide for the development of the next generation of fluorescent probes.

DNA-based enzymatic systems and their applications

DNA strands with unique secondary structures can catalyze various chemical reactions and mimic natural enzymes with the assistance of cofactors, which have attracted much research attention. At the same time, the emerging DNA nanotechnology provides an efficient platform to organize functional components of the enzymatic systems and regulate their catalytic performances. In this review, we summarize the recent progress of DNA-based enzymatic systems. First, DNAzymes (Dzs) are introduced, and their versatile utilities are summarized. Then, G-quadruplex/hemin (G4/hemin) Dzs with unique oxidase/peroxidase-mimicking activities and representative examples where these Dzs served as biosensors are explicitly elaborated. Next, the DNA-based enzymatic cascade systems fabricated by the structural DNA nanotechnology are depicted. In addition, the applications of catalytic DNA nanostructures in biosensing and biomedicine are included. At last, the challenges and the perspectives of the DNA-based enzymatic systems for practical applications are also discussed.

A red-emissive two-photon fluorescent probe for mitochondrial sodium ions in live tissue

A cyclocyanine (CC)-based organic small molecule two-photon (TP) fluorescent probe (CCNa1) was developed for mitochondrial sodium ion sensing. CCNa1 exhibits a low solvatochromic shift and strong TP fluorescence enhancement at 575 nm upon binding to Na⁺ and is insensitive to other metal ions and to pH. CCNa1 demonstrated fast cell loading ability, biocompatibility, and sensitive response to mitochondrial Na⁺ influx in live cells and mouse brain tissue.

Switch-On Diketopyrrolopyrrole-Based Chemosensors for Cations Possessing Lewis Acid Character

For the first time diketopyrrolopyrroles (DPPs) have been synthesized directly from nitriles possessing (aza)crown ethers leading to macrocycle-dye hybrids. Depending on the nature of the linkage between DPP and macrocyclic ring, various coordination effects are found. The strong interaction of the cations possessing Lewis acid character such as Li⁺ , Mg²⁺ and Zn²⁺ with 2-aminopyridin-4-yl-DPPs, leading to a bathochromic shift of both emission and absorption, as well as to strong enhancement of fluorescence was rationalized in terms of strong binding of these cations to the N=C-NR₂ functionality. The same effect has been observed for protonation. Depending on the size and the structure of the macrocyclic ring the complexation of cations by aza-crown ethers plays an important but secondary role. The interaction of Na⁺ and K⁺ with 2-aminopyridin-4-yl-DPPs leads to moderate enhancement of fluorescence due to the aza-crown ethers binding. The very weak fluorescence of DPP bearing 2-dialkylamino-pyridine-4-yl substituents is due to the closely lying T₂ state and the resulting intersystem crossing.

A naphthalimide-linked new pyridylazo phenol derivative for selective sensing of cyanide ions (CN-) in sol-gel medium

Napthalimide-linked pyridylazo derivatives 1 and 2 have been designed and synthesized. Compound 1 acts as a gelator in DMF-H₂O (1 : 1, v/v). The brown gel is photostable and shows good viscoelastic properties. The value of G' is almost 10 times higher than that of G'' over the entire range of frequencies at a constant strain of 1%. The SEM image shows the presence of densely stacked flakes. In comparison, compound 2, devoid of free phenolic -OH, does not show gelation properties under identical conditions. However, the brown gel of 1 shows selective sensing of CN^- ions over a series of anions involving phase change through the deprotonation mechanism. While the brown gel of 1 is selectively ruptured in the presence of CN^- to the sol, compound 1 in solution shows measurable UV-vis and emission changes in the presence of CN^- over the other anions and validates the visual sensing of CN^-. In the test-kit application, the yellow paper strip turned into pinkish-red upon contact with CN^-.

Naphthalimide-decorated imino-phenol: supramolecular gelation and selective sensing of Fe3+ and Cu2+ ions under different experimental conditions

Compound 1 forms gels in DMF–H₂O (1 : 1, v/v) and DMSO–H₂O (1 : 1, v/v). While it was insensitive to any metal ion in DMF–H₂O, the gel state was responsive to Fe³⁺ over the other metal ions studied. In CH₃CN or aqueous CH₃CN compound 1 senses Cu²⁺ ion.

A new 1,2,3-triazole-decorated imino-phenol: selective sensing of Zn2+, Cu2+ and picric acid under different experimental conditions

A new 1,2,3-triazole-based imino-phenol 1 is synthesized. It selectively senses Zn²⁺ in CH₃CN–H₂O with a detection limit of 1.8 × 10⁻⁶ M. Further, the selective sensing of Cu²⁺ and picric acid is achieved by the ensemble 1.Zn²⁺ in CH₃CN–H₂O.

Anthracene labeled poly(pyridine methacrylamide) as a polymer-based chemosensor for detection of pyrophosphate (P2O74-) in semi-aqueous media

To develop fluorophore-labelled pyridinium-based macromolecular architectures for fluorometric and colorimetric detection of anions, two polymers P1 and P2 are synthesized. Linear polymer P1 and cross-linked polymer P2, prepared from N-methacryloyl-3-aminopyridine monomers via free radical polymerization followed by quaternization of the pyridine ring nitrogen with anthracene as a fluorescent marker, have been successfully employed in anion sensing. P1 exhibits excellent sensing of HPPi in aqueous DMSO. In addition to the enhancement of fluorescence emission of the anthracene moiety, P1 exclusively shows excimer/exciplex emission in the presence of HPPi over other anions and exhibits selectivity to HPPi with a detection limit of about 1.63 ppm. Cross-linked P2 exhibits naked-eye detection of PPi/HPPi over other anions studied via indicator displacement assay (IDA).

23 Na-MRI as a Noninvasive Biomarker for Cancer Diagnosis and Prognosis

The influx of sodium (Na⁺) ions into a resting cell is regulated by Na⁺ channels and by Na⁺/H⁺ and Na⁺/Ca²⁺ exchangers, whereas Na⁺ ion efflux is mediated by the activity of Na⁺/K⁺‐ATPase to maintain a high transmembrane Na⁺ ion gradient. Dysfunction of this system leads to changes in the intracellular sodium concentration that promotes cancer metastasis by mediating invasion and migration. In addition, the accumulation of extracellular Na⁺ ions in cancer due to inflammation contributes to tumor immunogenicity. Thus, alterations in the Na⁺ ion concentration may potentially be used as a biomarker for malignant tumor diagnosis and prognosis. However, current limitations in detection technology and a complex tumor microenvironment present significant challenges for the in vivo assessment of Na⁺ concentration in tumor. ²³Na‐magnetic resonance imaging (²³Na‐MRI) offers a unique opportunity to study the effects of Na⁺ ion concentration changes in cancer. Although challenged by a low signal‐to‐noise ratio, the development of ultrahigh magnetic field scanners and specialized sodium acquisition sequences has significantly advanced ²³Na‐MRI. ²³Na‐MRI provides biochemical information that reflects cell viability, structural integrity, and energy metabolism, and has been shown to reveal rapid treatment response at the molecular level before morphological changes occur. Here we review the basis of ²³Na‐MRI technology and discuss its potential as a direct noninvasive in vivo diagnostic and prognostic biomarker for cancer therapy, particularly in cancer immunotherapy. We propose that ²³Na‐MRI is a promising method with a wide range of applications in the tumor immuno‐microenvironment research field and in cancer immunotherapy monitoring.

Level of Evidence

2

Technical Efficacy

Stage 2

Adenine-linked naphthalimide: A case of selective colorimetric as well as fluorometric sensing of F- and anion-activated moisture detection in organic solvents and CO2-sensing

Compounds 1, 2 and 3 with a common strategy of variation of substituent at the 4-position of naphthalimide have been designed and synthesized. Of the three structures, compound 1 has been established as F^- sensor in CH₃CN involving a color change from colorless to pink. The pink color is discharged in the presence of water or any polar protic solvent. By comparison, while compound 3 did not show any response towards anions, compound 2 under identical conditions exhibited color change from light yellow to pink in presence of several basic anions such as F^-, AcO^- and H₂PO₄^-. This emphasizes the importance on structural tuning in establishing a new effective sensor for a particular anion. F^--induced deprotonation of 1 and its reprotonation with water has been employed as the working principle to detect the moisture content in various organic solvents. In addition, F^--activated CO₂ sensing via color and fluorescence changes have been demonstrated using chemosensor 1. Compound 1 and F^- coated paper exhibit color change on heating and cooling. Writing on this 1.F^- coated paper using AcO^- ion as ink and its appearance/disappearance on heating/cooling has been possible successfully.

Copillar[5]arene-rhodamine conjugate as a selective sensor for Hg2+ ions

A new copillar[5]arene-coupled rhodamine probe 1 shows selective sensing of Hg²⁺ ions over a series of metal ions in CH₃CN by exhibiting color change of the solution as well as turn on fluorescence. It also shows interaction with Cu²⁺ by exhibiting different color and spectral change. Tetrabutylammonium iodide distinguishes between Hg²⁺ and Cu²⁺ ions.

Na+ Selective Fluorescent Tools Based on Fluorescence Intensity Enhancements, Lifetime Changes, and on a Ratiometric Response

Over the years, we developed highly selective fluorescent probes for K+ in water, which show K+ -induced fluorescence intensity enhancements, lifetime changes, or a ratiometric behavior at two emission wavelengths (cf. Scheme 1, K1-K4). In this paper, we introduce selective fluorescent probes for Na+ in water, which also show Na+ induced signal changes, which are analyzed by diverse fluorescence techniques. Initially, we synthesized the fluorescent probes 2, 4, 5, 6 and 10 for a fluorescence analysis by intensity enhancements at one wavelength by varying the Na+ responsive ionophore unit and the fluorophore moiety to adjust different Kd values for an intra- or extracellular Na+ analysis. Thus, we found that 2, 4 and 5 are Na+ selective fluorescent tools, which are able to measure physiologically important Na+ levels at wavelengths higher than 500 nm. Secondly, we developed the fluorescent probes 7 and 8 to analyze precise Na+ levels by fluorescence lifetime changes. Herein, only 8 (Kd =106 mm) is a capable fluorescent tool to measure Na+ levels in blood samples by lifetime changes. Finally, the fluorescent probe 9 was designed to show a Na+ induced ratiometric fluorescence behavior at two emission wavelengths. As desired, 9 (Kd =78 mm) showed a ratiometric fluorescence response towards Na+ ions and is a suitable tool to measure physiologically relevant Na+ levels by the intensity change of two emission wavelengths at 404 nm and 492 nm.

Live-Cell Imaging of Physiologically Relevant Metal Ions Using Genetically Encoded FRET-Based Probes

Essential biochemical reactions and processes within living organisms are coupled to subcellular fluctuations of metal ions. Disturbances in cellular metal ion homeostasis are frequently associated with pathological alterations, including neurotoxicity causing neurodegeneration, as well as metabolic disorders or cancer. Considering these important aspects of the cellular metal ion homeostasis in health and disease, measurements of subcellular ion signals are of broad scientific interest. The investigation of the cellular ion homeostasis using classical biochemical methods is quite difficult, often even not feasible or requires large cell numbers. Here, we report of genetically encoded fluorescent probes that enable the visualization of metal ion dynamics within individual living cells and their organelles with high temporal and spatial resolution. Generally, these probes consist of specific ion binding domains fused to fluorescent protein(s), altering their fluorescent properties upon ion binding. This review focuses on the functionality and potential of these genetically encoded fluorescent tools which enable monitoring (sub)cellular concentrations of alkali metals such as K⁺, alkaline earth metals including Mg²⁺ and Ca²⁺, and transition metals including Cu⁺/Cu²⁺ and Zn²⁺. Moreover, we discuss possible approaches for the development and application of novel metal ion biosensors for Fe²⁺/Fe³⁺, Mn²⁺ and Na⁺.

Triazole-amide isosteric pyridine-based supramolecular gelators in metal ion and biothiol sensing with excellent performance in adsorption of heavy metal ions and picric acid from water

Pyridine-based gelators 1–4 of triazole-amide isosteric relationship have been considered in metal ion sensing, heavy metal and picric acid adsorption from water. The change from triazole to isosteric amide has marked effect on gelling properties of the gelators.

A 1,8-naphthalimide–pyridoxal conjugate as a supramolecular gelator for colorimetric read out of F− ions in solution, gel and solid states

Naphthalimide–pyridoxal conjugated gelator 1 has been designed and synthesized. Compound 1 which forms stable greenish yellow colored gel in DMSO : H₂O (8 : 1 v/v), shows selective sensing of F⁻ in solution, gel and solid states under different conditions.

A sulfonyl hydrazone cholesterol conjugate: gelation, anion interaction and its application in dye adsorption

Cholesterol appended sulfonyl-hydrazone derivative 1 was designed and synthesized as a supramolecular gelator for anionic sensing and dye adsorption. Gelator 1 forms a strong gel in DMSO–H₂O and the morphology of the xerogel shows a tiny rod-like fibrous network. The gel of 1 shows a selective response toward CN⁻ and F⁻ ions causing gel-to-sol transformation. The gel of 1 acts as an efficient matrix for adsorption and removal of anionic dyes such as erythrosine B and uranine from water.

Cholesterol linked benzothiazole: a versatile gelator for detection of picric acid and metal ions such as Ag+, Hg2+, Fe3+ and Al3+ under different conditions

The interaction of compound 1 with nitrophenols and metal ions has been studied in sol–gel medium. The nitrobenzene gel selectively recognizes picric acid, Ag⁺ and Hg²⁺ ions. In CH₃CN, compound 1 further shows affinity towards Fe³⁺, Al³⁺ and Hg²⁺.

Dosimetric Chromogenic Probe for Selective Detection of Sulfide via Sol-Gel Methodology

Dinitrobenzenesulfonyl-protected naphthyl azo pyridine conjugate 1 has been designed and synthesized. Compound 1 acts as a nongelator in dimethyl sulfoxide (DMSO)-H2O (1:1, v/v) while its hydroxy counterpart 2 can form a nice gel in the same solvent. In the presence of sulfide, compound 1 undergoes rapid sulfonate ester hydrolysis and results in the formation of azo-naphthol 2 that responds in instant gelation. Such deprotection was extremely selective to sulfide; other analytes did not show measurable response. The sensing mechanism has been established by various spectroscopic techniques. Compound 1 in solution (DMSO-H2O) also shows a selective response toward sulfide over a series of other anions with a color change. Preparation of test kit with compound 1 allows detection of sulfide in solution and vapor states. Such kind of dosimetric sensing of chemical analytes by improvising the protection/deprotection of functional groups in gelator structure is rare in the literature, and to the best of our knowledge, this is the first example of a stimuli-responsive low-molecular-weight gelator which dosimetrically senses sulfide over other nucleophilic substrates.

Diaminomalenonitrile-decorated cholesterol-based supramolecular gelator: aggregation, multiple analyte (hydrazine, Hg2+ and Cu2+) detection and dye adsorption

A low molecular weight gelator (LMWG) containing a diaminomalenonitrile functional group 1 forms supramolecular gels from DMF–H₂O and 1,2-dichlorobenzene. The DMF/H₂O gel is multi-analyte responsive (Hg²⁺, Cu²⁺ and hydrazine) with practical applications in dye adsorption from water.

New Six-Membered pH-Insensitive Rhodamine Spirocycle in Selective Sensing of Cu2+ through C-C Bond Cleavage and Its Application in Cell Imaging

A new rhodamine-based chemosensor 1 with a six-membered spirocyclic ring has been synthesized, which exhibits excellent pH stability and shows selective "turn-on" fluorescent detection of Cu²⁺ ions over a series of other metal ions including Cu⁺ ions. The expansion of spirocycle improves the stability and selectivity of the chemosensors in sensing of metal ions. Till today only few rhodamine structures R1-R5 with thiourea-, hydrazine amide-, or pyrrole-decorated six-membered spirocyclic rings are known that exhibit metal-ion sensing via C-N bond cleavage of the spiro ring. In this context, rhodamine compound that responds to the metal ion through C-C bond cleavage of the six-membered spiro ring is completely unknown. The present example is a first-time report that demonstrates selective sensing of Cu²⁺ ions through C-C bond cleavage over the conventional existing systems in the literature. The chemosensor 1 is cell permeable and can detect Cu²⁺ in live cells using confocal microscopy in the biologically relevant pH range with high photostability.

Sodium-Selective Fluoroionophore-Based Optodes for Seawater Salinity Measurement

A new fluorescent sensor for Na⁺ is presented. The sensor relies on a Na⁺ selective fluoroionophore based on a bright red-emitting BODIPY chromophore. The fluorescence of the fluoroionophore is enhanced upon binding of Na⁺-ions to the highly selective aza-crown ether receptor due to reduction of the photoinduced electron transfer (PET) quenching. Solid state sensing materials were prepared by physically embedding the fluoroionophore into water-swellable biocompatible polymer matrices (polyurethane hydrogels), thus enabling continuous measurements of aqueous samples. Despite the simple design, the sensor showed no leaching of the indicator and featured fast and reversible response. Among different polyurethane hydrogels investigated, the hydrogel D1 featuring the highest water uptake was found to be the most suitable due to the highest dynamics between "off" and "on" states. Due to little or no cross sensitivity to other ions (e.g., Mg²⁺, Ca²⁺, K⁺) and its insensitivity to potential changes in pH, this sensor is promising for use in clinical diagnostics and for biological and marine applications. Fiber-optic sensors based on referenced read-out with a compact phase fluorimeter were prepared. To demonstrate their practical applicability, the sensors were used to determine the salinity in the seawater and brackish water of the Baltic Sea.

A Cryptand Metal-Organic Framework as a Platform for the Selective Uptake and Detection of Group I Metal Cations

The metal-organic framework (MOF) complex (H₃ O)₂ [Zn₄ (ur)(Hfdc)₂ (fdc)₄ ] (1, ur=urotropine, H₂ fdc=furan-2,5-dicarboxylic acid) incorporates cryptand-like cavities, which can be used to separate and detect Rb⁺ and Cs⁺ optically. This is the first example of the effective employment of a MOF material for optical detection of these cations.

Recent progress in the design and applications of fluorescence probes containing crown ethers

Crown ethers, discovered by the winner of the Nobel Prize Charles Pedersen, are cyclic chemical compounds that consist of a ring or multiple rings containing several ether groups that are capable of binding various ions.

A highly specific sodium aptamer probed by 2-aminopurine for robust Na+ sensing

Sodium is one of the most abundant metals in the environment and in biology, playing critical ecological and physiological roles. Na⁺ is also the most common buffer salt for nucleic acids research, while its specific interaction with DNA has yet to be fully studied. Herein, we probe a highly selective and robust Na⁺ aptamer using 2-aminopurine (2AP), a fluorescent adenine analog. This aptamer has two DNA strands derived from the Ce13d DNAzyme. By introducing a 2AP at the cleavage site of the substrate strand, Na⁺ induces ∼40% fluorescence increase. The signaling is improved by a series of rational mutations, reaching >600% with the C₁₀A₂₀ double mutant. This fluorescence enhancement suggests relaxed base stacking near the 2AP label upon Na⁺ binding. By replacing a non-conserved adenine in the enzyme strand by 2AP, Na⁺-dependent fluorescence quenching is observed, suggesting that the enzyme loop folds into a more compact structure upon Na⁺ binding. The fluorescence changes allow for Na⁺ detection. With an optimized sequence, a detection limit of 0.4 mM Na⁺ is achieved, reaching saturated signal in less than 10 s. The sensor response is insensitive to ionic strength, which is critical for Na⁺ detection.