1
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Fritsch L, Rehsies P, Barakat W, Estes DP, Bauer M. Detection and Characterization of Hydride Ligands in Copper Complexes by Hard X-Ray Spectroscopy. Chemistry 2024; 30:e202400357. [PMID: 38651986 DOI: 10.1002/chem.202400357] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2024] [Revised: 04/17/2024] [Accepted: 04/18/2024] [Indexed: 04/25/2024]
Abstract
Transition metal complexes, particularly copper hydrides, play an important role in various catalytic processes and molecular inorganic chemistry. This study employs synchrotron hard X-ray spectroscopy to gain insights into the geometric and electronic properties of copper hydrides as potential catalysts for CO2 hydrogenation. The potential of high energy resolution X-ray absorption near-edge structure (HERFD-XANES) and valence-to-core X-ray emission (VtC-XES) is demonstrated with measurement on Stryker's reagent (Cu6H6) and [Cu3(μ3-H)(dpmppe)2](PF6)2 (Cu3H), alongside a non-hydride copper compound ICu(dtbppOH) (Cuy-I). The XANES analysis reveals that coordination geometries strongly influence the spectra, providing only indirect details about hydride coordination. The VtC-XES analysis exhibits a distinct signal around 8975 eV, offering a diagnostic tool to identify hydride ligands. Theoretical calculations support and extend these findings by comparing hydride-containing complexes with their hydride-free counterparts.
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Affiliation(s)
- Lorena Fritsch
- Institute of Inorganic Chemistry and Center for Sustainable Systems Design (CSSD), Paderborn University, Warburger Straße 100, 33098, Paderborn, Germany
| | - Pia Rehsies
- Institute of Inorganic Chemistry and Center for Sustainable Systems Design (CSSD), Paderborn University, Warburger Straße 100, 33098, Paderborn, Germany
| | - Wael Barakat
- Instritute of Technical Chemistry, University of Stuttgart, Pfaffenwaldring 55, 70569, Stuttgart, Germany
| | - Deven P Estes
- Instritute of Technical Chemistry, University of Stuttgart, Pfaffenwaldring 55, 70569, Stuttgart, Germany
| | - Matthias Bauer
- Institute of Inorganic Chemistry and Center for Sustainable Systems Design (CSSD), Paderborn University, Warburger Straße 100, 33098, Paderborn, Germany
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2
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Lee W, Li L, Camarasa-Gómez M, Hernangómez-Pérez D, Roy X, Evers F, Inkpen MS, Venkataraman L. Photooxidation driven formation of Fe-Au linked ferrocene-based single-molecule junctions. Nat Commun 2024; 15:1439. [PMID: 38365892 PMCID: PMC10873316 DOI: 10.1038/s41467-024-45707-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2023] [Accepted: 02/02/2024] [Indexed: 02/18/2024] Open
Abstract
Metal-metal contacts, though not yet widely realized, may provide exciting opportunities to serve as tunable and functional interfaces in single-molecule devices. One of the simplest components which might facilitate such binding interactions is the ferrocene group. Notably, direct bonds between the ferrocene iron center and metals such as Pd or Co have been demonstrated in molecular complexes comprising coordinating ligands attached to the cyclopentadienyl rings. Here, we demonstrate that ferrocene-based single-molecule devices with Fe-Au interfacial contact geometries form at room temperature in the absence of supporting coordinating ligands. Applying a photoredox reaction, we propose that ferrocene only functions effectively as a contact group when oxidized, binding to gold through a formal Fe3+ center. This observation is further supported by a series of control measurements and density functional theory calculations. Our findings extend the scope of junction contact chemistries beyond those involving main group elements, lay the foundation for light switchable ferrocene-based single-molecule devices, and highlight new potential mechanistic function(s) of unsubstituted ferrocenium groups in synthetic processes.
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Affiliation(s)
- Woojung Lee
- Department of Chemistry, Columbia University, New York, NY, 10027, USA
| | - Liang Li
- Department of Chemistry, Columbia University, New York, NY, 10027, USA
| | - María Camarasa-Gómez
- Institute of Theoretical Physics, University of Regensburg, 93040, Regensburg, Germany
| | | | - Xavier Roy
- Department of Chemistry, Columbia University, New York, NY, 10027, USA
| | - Ferdinand Evers
- Institute of Theoretical Physics, University of Regensburg, 93040, Regensburg, Germany.
| | - Michael S Inkpen
- Department of Chemistry, University of Southern California, Los Angeles, CA, 90089, USA.
| | - Latha Venkataraman
- Department of Chemistry, Columbia University, New York, NY, 10027, USA.
- Department of Applied Physics and Applied Mathematics, Columbia University, New York, NY, 10027, USA.
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3
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Reidelbach M, Bai M, Schneeberger M, Zöllner MS, Kubicek K, Kirchberg H, Bressler C, Thorwart M, Herrmann C. Solvent Dynamics of Aqueous Halides before and after Photoionization. J Phys Chem B 2023; 127:1399-1413. [PMID: 36728132 DOI: 10.1021/acs.jpcb.2c07992] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
Electron transfer reactions can be strongly influenced by solvent dynamics. We study the photoionization of halides in water as a model system for such reactions. There are no internal nuclear degrees of freedom in the solute, allowing the dynamics of the solvent to be uniquely identified. We simulate the equilibrium solvent dynamics for Cl-, Br-, I-, and their respective neutral atoms in water, comparing quantum mechanical/molecular mechanical (QM/MM) and classical molecular dynamics (MD) methods. On the basis of the obtained configurations, we calculate the extended X-ray absorption fine structure (EXAFS) spectra rigorously based on the MD snapshots and compare them in detail with other theoretical and experimental results available in the literature. We find our EXAFS spectra based on QM/MM MD simulations in good agreement with their experimental counterparts for the ions. Classical MD simulations for the ions lead to EXAFS spectra that agree equally well with the experiment when it comes to the oscillatory period of the signal, even though they differ from the QM/MM radial distribution functions extracted from the MD. The amplitude is, however, considerably overestimated. This suggests that to judge the reliability of theoretical simulation methods or to elucidate fine details of the atomistic dynamics of the solvent based on EXAFS spectra, the amplitude as well as the oscillatory period need to be considered. If simulations fail qualitatively, as does the classical MD for the aqueous neutral halogen atoms, the resulting EXAFS will also be strongly affected in both oscillatory period and amplitude. The good reliability of QM/MM-based EXAFS simulations, together with clear qualitative differences in the EXAFS spectra found between halides and their atomic counterparts, suggests that a combined theory and experimental EXAFS approach is suitable for elucidating the nonequilibrium solvent dynamics in the photoionization of halides and possibly also for electron transfer reactions in more complex systems.
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Affiliation(s)
- Marco Reidelbach
- Department of Chemistry, Universität Hamburg, Harbor Bldg. 610, Luruper Chaussee 149, 22761Hamburg, Germany.,The Hamburg Centre of Ultrafast Imaging, Luruper Chaussee 149, 22761Hamburg, Germany
| | - Mei Bai
- The Hamburg Centre of Ultrafast Imaging, Luruper Chaussee 149, 22761Hamburg, Germany.,I. Institut für Theoretische Physik, Universität Hamburg, Notkestr. 9, 22607Hamburg, Germany
| | - Michaela Schneeberger
- Department of Chemistry, Universität Hamburg, Harbor Bldg. 610, Luruper Chaussee 149, 22761Hamburg, Germany.,The Hamburg Centre of Ultrafast Imaging, Luruper Chaussee 149, 22761Hamburg, Germany
| | - Martin Sebastian Zöllner
- Department of Chemistry, Universität Hamburg, Harbor Bldg. 610, Luruper Chaussee 149, 22761Hamburg, Germany.,The Hamburg Centre of Ultrafast Imaging, Luruper Chaussee 149, 22761Hamburg, Germany
| | - Katharina Kubicek
- The Hamburg Centre of Ultrafast Imaging, Luruper Chaussee 149, 22761Hamburg, Germany.,Department of Physics, Universität Hamburg, Notkestr. 85, 22607Hamburg, Germany.,European XFEL, Holzkoppel 4, 22869Schenefeld, Germany
| | - Henning Kirchberg
- The Hamburg Centre of Ultrafast Imaging, Luruper Chaussee 149, 22761Hamburg, Germany.,I. Institut für Theoretische Physik, Universität Hamburg, Notkestr. 9, 22607Hamburg, Germany
| | - Christian Bressler
- The Hamburg Centre of Ultrafast Imaging, Luruper Chaussee 149, 22761Hamburg, Germany.,Department of Physics, Universität Hamburg, Notkestr. 85, 22607Hamburg, Germany.,European XFEL, Holzkoppel 4, 22869Schenefeld, Germany
| | - Michael Thorwart
- The Hamburg Centre of Ultrafast Imaging, Luruper Chaussee 149, 22761Hamburg, Germany.,I. Institut für Theoretische Physik, Universität Hamburg, Notkestr. 9, 22607Hamburg, Germany
| | - Carmen Herrmann
- Department of Chemistry, Universität Hamburg, Harbor Bldg. 610, Luruper Chaussee 149, 22761Hamburg, Germany.,The Hamburg Centre of Ultrafast Imaging, Luruper Chaussee 149, 22761Hamburg, Germany
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4
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Lawson B, Zahl P, Hybertsen MS, Kamenetska M. Formation and Evolution of Metallocene Single-Molecule Circuits with Direct Gold-π Links. J Am Chem Soc 2022; 144:6504-6515. [PMID: 35353518 DOI: 10.1021/jacs.2c01322] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Single-molecule circuits with group 8 metallocenes are formed without additional linker groups in scanning tunneling microscope-based break junction (STMBJ) measurements at cryogenic and room-temperature conditions with gold (Au) electrodes. We investigate the nature of this direct gold-π binding motif and its effect on molecular conductance and persistence characteristics during junction evolution. The measurement technique under cryogenic conditions tracks molecular plateaus through the full cycle of extension and compression. Analysis reveals that junction persistence when the metal electrodes are pushed together correlates with whether electrodes are locally sharp or blunt, suggesting distinct scenarios for metallocene junction formation and evolution. The top and bottom surfaces of the "barrel"-shaped metallocenes present the electron-rich π system of cyclopentadienyl rings, which interacts with the gold electrodes in two distinct ways. An undercoordinated gold atom on a sharp tip forms a donor-acceptor bond to a specific carbon atom in the ring. However, a small, flat patch on a dull tip can bind more strongly to the ring as a whole through van der Waals interactions. Density functional theory (DFT)-based calculations of model electrode structures provide an atomic-scale picture of these scenarios, demonstrating the role of these bonding motifs during junction evolution and showing that the conductance is relatively independent of tip atomic-scale structure. The nonspecific interaction of the cyclopentadienyl rings with the electrodes enables extended conductance plateaus, a mechanism distinct from that identified for the more commonly studied, rod-shaped organic molecular wires.
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Affiliation(s)
- Brent Lawson
- Department of Physics, Boston University, Boston, Massachusetts 02215, United States
| | - Percy Zahl
- Center for Functional Nanomaterials, Brookhaven National Laboratory, Upton, New York 11973, United States
| | - Mark S Hybertsen
- Center for Functional Nanomaterials, Brookhaven National Laboratory, Upton, New York 11973, United States
| | - Maria Kamenetska
- Department of Physics, Boston University, Boston, Massachusetts 02215, United States.,Department of Chemistry, Boston University, Boston, Massachusetts 02215, United States.,Division of Material Science and Engineering, Boston University, Boston, Massachusetts 02215, United States
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5
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Fedorenko AD, Semushkina GI, Peregudova NN, Lavrukhina SA, Gushchin AL, Fomenko YS, Sokolov MN, Gusel′nikov AV, Kalinkin AV, Nikolenko AD, Ivlyushkin DV, Zavertkin PS, Mazalov LN. STUDYING THE ELECTRONIC STRUCTURE OF TRINUCLEAR MOLYBDENUM CLUSTER SULFIDES WITH {Mo3S4} AND {Mo3S7} CORES BY X-RAY SPECTROSCOPY. J STRUCT CHEM+ 2021. [DOI: 10.1134/s0022476621060056] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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6
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Besley NA. Modeling of the spectroscopy of core electrons with density functional theory. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2021. [DOI: 10.1002/wcms.1527] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Nicholas A. Besley
- School of Chemistry, University of Nottingham University Park Nottingham UK
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7
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Winkler M, Schnierle M, Ehrlich F, Mehnert KI, Hunger D, Sheveleva AM, Burkhardt L, Bauer M, Tuna F, Ringenberg MR, van Slageren J. Electronic Structure of a Diiron Complex: A Multitechnique Experimental Study of [(dppf)Fe(CO) 3] +/0. Inorg Chem 2021; 60:2856-2865. [PMID: 33569942 DOI: 10.1021/acs.inorgchem.0c03259] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Here we explore the electronic structure of the diiron complex [(dppf)Fe(CO)3]0/+ [10/+; dppf = 1,1'-bis(diphenylphosphino)ferrocene] in two oxidation states by an advanced multitechnique experimental approach. A combination of magnetic circular dichroism, X-ray absorption and emission, high-frequency electron paramagnetic resonance (EPR), and Mössbauer spectroscopies is used to establish that oxidation of 10 occurs on the carbonyl iron ion, resulting in a low-spin iron(I) ion. It is shown that an unequivocal result is obtained by combining several methods. Compound 1+ displays slow spin dynamics, which is used here to study its geometric structure by means of pulsed EPR methods. Surprisingly, these data show an association of the tetrakis[3,5-bis(trifluoromethylphenyl)]borate counterion with 1+.
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Affiliation(s)
- Mario Winkler
- Institute of Physical Chemistry, University of Stuttgart, Pfaffenwaldring 55, Stuttgart 70569, Germany
| | - Marc Schnierle
- Institute of Inorganic Chemistry, University of Stuttgart, Pfaffenwaldring 55, Stuttgart 70569, Germany
| | - Felix Ehrlich
- Institute of Physical Chemistry, University of Stuttgart, Pfaffenwaldring 55, Stuttgart 70569, Germany
| | - Kim-Isabelle Mehnert
- Institute of Physical Chemistry, University of Stuttgart, Pfaffenwaldring 55, Stuttgart 70569, Germany
| | - David Hunger
- Institute of Physical Chemistry, University of Stuttgart, Pfaffenwaldring 55, Stuttgart 70569, Germany
| | - Alena M Sheveleva
- Department of Chemistry and Photon Science Institute, University of Manchester, Oxford Road, Manchester M13 9PL, U.K
| | - Lukas Burkhardt
- Department of Chemistry and Center for Sustainable Systems Design, Paderborn University, Warburger Strasse 100, Paderborn 33098, Germany
| | - Matthias Bauer
- Department of Chemistry and Center for Sustainable Systems Design, Paderborn University, Warburger Strasse 100, Paderborn 33098, Germany
| | - Floriana Tuna
- Department of Chemistry and Photon Science Institute, University of Manchester, Oxford Road, Manchester M13 9PL, U.K
| | - Mark R Ringenberg
- Institute of Inorganic Chemistry, University of Stuttgart, Pfaffenwaldring 55, Stuttgart 70569, Germany
| | - Joris van Slageren
- Institute of Physical Chemistry, University of Stuttgart, Pfaffenwaldring 55, Stuttgart 70569, Germany
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8
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Chakraborty U, Bügel P, Fritsch L, Weigend F, Bauer M, Jacobi von Wangelin A. Planar Iron Hydride Nanoclusters: Combined Spectroscopic and Theoretical Insights into Structures and Building Principles. ChemistryOpen 2021; 10:265-271. [PMID: 33646644 PMCID: PMC7919527 DOI: 10.1002/open.202000307] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2020] [Revised: 02/17/2021] [Indexed: 11/11/2022] Open
Abstract
The controlled assembly of well-defined planar nanoclusters from molecular precursors is synthetically challenging and often plagued by the predominant formation of 3D-structures and nanoparticles. Herein, we report planar iron hydride nanoclusters from reactions of main group element hydrides with iron(II) bis(hexamethyldisilazide). The structures and properties of isolated Fe4 , Fe6 , and Fe7 nanoplatelets and calculated intermediates enable an unprecedented insight into the underlying building principle and growth mechanism of iron clusters, metal monolayers, and nanoparticles.
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Affiliation(s)
- Uttam Chakraborty
- Dept. of ChemistryUniversity of Hamburg Martin Luther King Pl. 620146HamburgGermany
| | - Patrick Bügel
- Institut für NanotechnologieKarlsruher Institut für Technologie (KIT)v.-Helmholtz Pl. 176344Eggenstein-LeopoldshafenGermany
| | - Lorena Fritsch
- Dept. of Chemistry, Center for Sustainable Systems Design (CSSD)University of PaderbornWarburger Str. 10033098PaderbornGermany
| | - Florian Weigend
- Institut für NanotechnologieKarlsruher Institut für Technologie (KIT)v.-Helmholtz Pl. 176344Eggenstein-LeopoldshafenGermany
- Fachbereich ChemiePhilipps-Universität MarburgHans-Meerwein-Str. 435032MarburgGermany
| | - Matthias Bauer
- Dept. of Chemistry, Center for Sustainable Systems Design (CSSD)University of PaderbornWarburger Str. 10033098PaderbornGermany
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9
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Simonne DH, Martini A, Signorile M, Piovano A, Braglia L, Torelli P, Borfecchia E, Ricchiardi G. THORONDOR: a software for fast treatment and analysis of low-energy XAS data. JOURNAL OF SYNCHROTRON RADIATION 2020; 27:1741-1752. [PMID: 33147203 DOI: 10.1107/s1600577520011388] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2020] [Accepted: 08/19/2020] [Indexed: 06/11/2023]
Abstract
THORONDOR is a data treatment software with a graphical user interface (GUI) accessible via the browser-based Jupyter notebook framework. It aims to provide an interactive and user-friendly tool for the analysis of NEXAFS spectra collected during in situ experiments. The program allows on-the-fly representation and quick correction of large datasets from single or multiple experiments. In particular, it provides the possibility to align in energy several spectral profiles on the basis of user-defined references. Various techniques to calculate background subtraction and signal normalization have been made available. In this context, an innovation of this GUI involves the usage of a slider-based approach that provides the ability to instantly manipulate and visualize processed data for the user. Finally, the program is characterized by an advanced fitting toolbox based on the lmfit package. It offers a large selection of fitting routines as well as different peak distributions and empirical ionization potential step edges, which can be used for the fit of the NEXAFS rising-edge peaks. Statistical parameters describing the goodness of a fit such as χ2 or the R-factor together with the parameter uncertainty distributions and the related correlations can be extracted for each chosen model.
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Affiliation(s)
- David Horst Simonne
- Department of Chemistry, INSTM Reference Center and NIS and CrisDi Interdepartmental Centers, University of Torino, Via P. Giuria 7, Torino 10125, Italy
| | - Andrea Martini
- Department of Chemistry, INSTM Reference Center and NIS and CrisDi Interdepartmental Centers, University of Torino, Via P. Giuria 7, Torino 10125, Italy
| | - Matteo Signorile
- Department of Chemistry, INSTM Reference Center and NIS and CrisDi Interdepartmental Centers, University of Torino, Via P. Giuria 7, Torino 10125, Italy
| | - Alessandro Piovano
- Department of Chemistry, INSTM Reference Center and NIS and CrisDi Interdepartmental Centers, University of Torino, Via P. Giuria 7, Torino 10125, Italy
| | - Luca Braglia
- CNR-IOM, TASC Laboratory, SS 14 km 163.5, Trieste 34149, Italy
| | - Piero Torelli
- CNR-IOM, TASC Laboratory, SS 14 km 163.5, Trieste 34149, Italy
| | - Elisa Borfecchia
- Department of Chemistry, INSTM Reference Center and NIS and CrisDi Interdepartmental Centers, University of Torino, Via P. Giuria 7, Torino 10125, Italy
| | - Gabriele Ricchiardi
- Department of Chemistry, INSTM Reference Center and NIS and CrisDi Interdepartmental Centers, University of Torino, Via P. Giuria 7, Torino 10125, Italy
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10
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Chen WT, Hsu CW, Lee JF, Pao CW, Hsu IJ. Theoretical Analysis of Fe K-Edge XANES on Iron Pentacarbonyl. ACS OMEGA 2020; 5:4991-5000. [PMID: 32201785 PMCID: PMC7081404 DOI: 10.1021/acsomega.9b03887] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2019] [Accepted: 02/21/2020] [Indexed: 05/21/2023]
Abstract
Iron pentacarbonyl (Fe(CO)5) is a versatile material that is utilized as an inhibitor of flame, shows soot suppressibility, and is used as a precursor for focused electron-beam-induced deposition (FEBID). X-ray absorption near-edge structure (XANES) of the K edge, which is a powerful technique for monitoring the oxidation states and coordination environment of metal sites, can be used to gain insight into Fe(CO)5-related reaction mechanisms in in situ experiments. We use a finite difference method (FDM) and molecular-orbital-based time-dependent density functional theory (TDDFT) calculations to clarify the Fe K-edge XANES features of Fe(CO)5. The two pre-edge peaks P1 and P2 are mainly the Fe(1s) → Fe-C(σ*) and Fe(1s) → Fe-C(π*) transitions, respectively. When the geometry transformed from D 3h to C 4v symmetry, a ∼30% decrease of the pre-edge P2 intensity was observed in the simulated spectra. This implies that the π bonding of Fe and CO is sensitive to changes in geometry. The following rising edge and white line regions are assigned to the Fe(1s) → Fe(4p)(mixing C(2p)) transitions. Our results may provide useful information to interpret XANES spectra variations of in situ reactions of metal-CO or similar compounds with π acceptor ligandlike metal-CN complexes.
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Affiliation(s)
- Wei-Ting Chen
- Department
of Molecular Science and Engineering, National
Taipei University of Technology, Taipei 10608, Taiwan
| | - Che-Wei Hsu
- Department
of Molecular Science and Engineering, National
Taipei University of Technology, Taipei 10608, Taiwan
| | - Jyh-Fu Lee
- National
Synchrotron Radiation Research Center, Hsinchu 30076, Taiwan
| | - Chih-Wen Pao
- National
Synchrotron Radiation Research Center, Hsinchu 30076, Taiwan
| | - I-Jui Hsu
- Department
of Molecular Science and Engineering, National
Taipei University of Technology, Taipei 10608, Taiwan
- Research
and Development Center for Smart Textile Technology, National Taipei University of Technology, Taipei 10608, Taiwan
- E-mail: .
Tel: +886-2-27712171#2420
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11
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Burkhardt L, Vukadinovic Y, Nowakowski M, Kalinko A, Rudolph J, Carlsson PA, Jacob CR, Bauer M. Electronic Structure of the Hieber Anion [Fe(CO) 3(NO)] - Revisited by X-ray Emission and Absorption Spectroscopy. Inorg Chem 2020; 59:3551-3561. [PMID: 32125149 DOI: 10.1021/acs.inorgchem.9b02092] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
While the Hieber anion [Fe(CO)3(NO)]- has been reincarnated in the last years as an active catalyst in organic synthesis, there is still a debate about the oxidation state of the central Fe atom and the resulting charge of the NO ligand. To shed new light on this question and to understand the Fe-NO interaction in the Hieber anion, it is investigated in comparison to the formal 3d8 reference Fe(CO)5 and the formal 3d10 reference [Fe(CO)4]2- by the combination of valence-to-core X-ray emission spectroscopy (VtC-XES), X-ray absorption near-edge structure spectroscopy (XANES), and high-energy-resolution fluorescence-detected XANES. In order to extract information about the electronic structure, time-dependent density functional theory and ground-state density functional theory calculations are applied. This combination of experimental and computational methods reveals that the electron density at the Fe center of the Hieber resembles that of the isoelectronic [Fe(CO)4]2-. These observations challenge recent descriptions of the Hieber anion and reopen the debate about the experimentally and computationally determined Fe oxidation state and charge on the NO ligand.
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Affiliation(s)
- Lukas Burkhardt
- Department of Chemistry and Center for Sustainable Systems Design, Paderborn University, Warburger Straße 100, 33098 Paderborn, Germany
| | - Yannik Vukadinovic
- Department of Chemistry and Center for Sustainable Systems Design, Paderborn University, Warburger Straße 100, 33098 Paderborn, Germany
| | - Michał Nowakowski
- Department of Chemistry and Center for Sustainable Systems Design, Paderborn University, Warburger Straße 100, 33098 Paderborn, Germany
| | - Aleksandr Kalinko
- Department of Chemistry and Center for Sustainable Systems Design, Paderborn University, Warburger Straße 100, 33098 Paderborn, Germany
| | - Julian Rudolph
- Institute of Physical and Theoretical Chemistry, Technische Universität Braunschweig, Gaußstraße 17, 38106 Braunschweig, Germany
| | - Per-Anders Carlsson
- Department of Chemistry and Chemical Engineering and Competence Centre for Catalysis, Chalmers University of Technology, 41296 Gothenburg, Sweden
| | - Christoph R Jacob
- Institute of Physical and Theoretical Chemistry, Technische Universität Braunschweig, Gaußstraße 17, 38106 Braunschweig, Germany
| | - Matthias Bauer
- Department of Chemistry and Center for Sustainable Systems Design, Paderborn University, Warburger Straße 100, 33098 Paderborn, Germany
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12
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Bergmann TG, Welzel MO, Jacob CR. Towards theoretical spectroscopy with error bars: systematic quantification of the structural sensitivity of calculated spectra. Chem Sci 2019; 11:1862-1877. [PMID: 34123280 PMCID: PMC8148348 DOI: 10.1039/c9sc05103a] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022] Open
Abstract
Molecular spectra calculated with quantum-chemical methods are subject to a number of uncertainties (e.g., errors introduced by the computational methodology) that hamper the direct comparison of experiment and computation. Judging these uncertainties is crucial for drawing reliable conclusions from the interplay of experimental and theoretical spectroscopy, but largely relies on subjective judgment. Here, we explore the application of methods from uncertainty quantification to theoretical spectroscopy, with the ultimate goal of providing systematic error bars for calculated spectra. As a first target, we consider distortions of the underlying molecular structure as one important source of uncertainty. We show that by performing a principal component analysis, the most influential collective distortions can be identified, which allows for the construction of surrogate models that are amenable to a statistical analysis of the propagation of uncertainties in the molecular structure to uncertainties in the calculated spectrum. This is applied to the calculation of X-ray emission spectra of iron carbonyl complexes, of the electronic excitation spectrum of a coumarin dye, and of the infrared spectrum of alanine. We show that with our approach it becomes possible to obtain error bars for calculated spectra that account for uncertainties in the molecular structure. This is an important first step towards systematically quantifying other relevant sources of uncertainty in theoretical spectroscopy. Uncertainty quantification is applied in theoretical spectroscopy to obtain error bars accounting for the structural sensitivity of calculated spectra.![]()
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Affiliation(s)
- Tobias G Bergmann
- Technische Universität Braunschweig, Institute of Physical and Theoretical Chemistry Gaußstraße 17 38106 Braunschweig Germany
| | - Michael O Welzel
- Technische Universität Braunschweig, Institute of Physical and Theoretical Chemistry Gaußstraße 17 38106 Braunschweig Germany
| | - Christoph R Jacob
- Technische Universität Braunschweig, Institute of Physical and Theoretical Chemistry Gaußstraße 17 38106 Braunschweig Germany
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13
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Zhu Y, Ji Y, Ju Z, Yu K, Ferreira PJ, Liu Y, Yu G. Ultrafast Intercalation Enabled by Strong Solvent–Host Interactions: Understanding Solvent Effect at the Atomic Level. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201908982] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Yue Zhu
- Materials Science and Engineering Program and Department of Mechanical Engineering The University of Texas at Austin Austin TX 78712 USA
| | - Yujin Ji
- Materials Science and Engineering Program and Department of Mechanical Engineering The University of Texas at Austin Austin TX 78712 USA
| | - Zhengyu Ju
- Materials Science and Engineering Program and Department of Mechanical Engineering The University of Texas at Austin Austin TX 78712 USA
| | - Kang Yu
- Materials Science and Engineering Program and Department of Mechanical Engineering The University of Texas at Austin Austin TX 78712 USA
- International Iberian Nanotechnology Laboratory Braga 4715-330 Portugal
| | - Paulo J. Ferreira
- International Iberian Nanotechnology Laboratory Braga 4715-330 Portugal
- Mechanical Engineering Department and IDMEC Instituto Superior Técnico University of Lisbon Av. Rovisco Pais Lisboa 1049-001 Portugal
| | - Yuanyue Liu
- Materials Science and Engineering Program and Department of Mechanical Engineering The University of Texas at Austin Austin TX 78712 USA
| | - Guihua Yu
- Materials Science and Engineering Program and Department of Mechanical Engineering The University of Texas at Austin Austin TX 78712 USA
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14
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Clarke CJ, Hayama S, Hawes A, Hallett JP, Chamberlain TW, Lovelock KRJ, Besley NA. Zinc 1s Valence-to-Core X-ray Emission Spectroscopy of Halozincate Complexes. J Phys Chem A 2019; 123:9552-9559. [PMID: 31609617 DOI: 10.1021/acs.jpca.9b08037] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The Zn 1s valence-to-core (VtC) X-ray emission spectra of seven ionic liquids have been measured experimentally and simulated on the basis of time-dependent density-functional theory (TDDFT) calculations. Six of the ionic liquids were made by mixing [C8C1Im]X and Zn(II)X2 at three different ZnX2 mole fractions (0.33, 0.50, or 0.67) for X = Cl or Br, and a further ionic liquid was made by mixing [P6,6,6,14]Cl and a mole fraction of ZnCl2 of 0.33. Calculations were performed for the [ZnX4]2-, [Zn2X6]2-, and [Zn4X10]2- ions to capture the expected metal complex speciation. The VtC emission spectra showed three bands arising from single-electron processes that can be assigned to emission from ligand p-type orbitals, zinc d-orbitals, and ligand s-type orbitals. For all seven ionic liquids, the highest occupied molecular orbital arises from the ligand p orbitals, and the spectra for the different size metal complexes for the same X were found to be very similar, in terms of both relative peak intensities and peak energies. For both experiments and TDDFT calculations, there was an energy difference of 0.5 eV between the Cl-based and Br-based metal complexes for the ligand s and p orbitals, while the Zn 3d orbital energies were relatively unaffected by the identity of the ligand. The TDDFT calculations find that for the ions with symmetrically equivalent zinc atoms ([Zn2X6]2- and [Zn4X10]2-), the most appropriate core-ionized reference state has a core-hole that is localized on a single zinc atom. In this framework, the spectra for the larger ions can be viewed as a sum of spectra for the tetrahedral complex with a single zinc atom with small variations in the structure of the coordinating ligands. Because the spectra are relatively insensitive to small changes in the geometry of the ligands, this is consistent with the small variation in the spectra measured in the experiment.
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Affiliation(s)
- Coby J Clarke
- Department of Chemical Engineering , Imperial College , London SW7 2AZ , U.K
| | - Shusaku Hayama
- Diamond Light Source , Didcot , Oxfordshire OX11 0DE , U.K
| | - Alexander Hawes
- Institute of Process Research and Development, School of Chemistry , University of Leeds , Leeds LS2 9JT , U.K
| | - Jason P Hallett
- Department of Chemical Engineering , Imperial College , London SW7 2AZ , U.K
| | - Thomas W Chamberlain
- Institute of Process Research and Development, School of Chemistry , University of Leeds , Leeds LS2 9JT , U.K
| | | | - Nicholas A Besley
- School of Chemistry , University of Nottingham , University Park , Nottingham NG7 2RD , U.K
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15
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Samantaray MK, D'Elia V, Pump E, Falivene L, Harb M, Ould Chikh S, Cavallo L, Basset JM. The Comparison between Single Atom Catalysis and Surface Organometallic Catalysis. Chem Rev 2019; 120:734-813. [PMID: 31613601 DOI: 10.1021/acs.chemrev.9b00238] [Citation(s) in RCA: 130] [Impact Index Per Article: 26.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
Single atom catalysis (SAC) is a recent discipline of heterogeneous catalysis for which a single atom on a surface is able to carry out various catalytic reactions. A kind of revolution in heterogeneous catalysis by metals for which it was assumed that specific sites or defects of a nanoparticle were necessary to activate substrates in catalytic reactions. In another extreme of the spectrum, surface organometallic chemistry (SOMC), and, by extension, surface organometallic catalysis (SOMCat), have demonstrated that single atoms on a surface, but this time with specific ligands, could lead to a more predictive approach in heterogeneous catalysis. The predictive character of SOMCat was just the result of intuitive mechanisms derived from the elementary steps of molecular chemistry. This review article will compare the aspects of single atom catalysis and surface organometallic catalysis by considering several specific catalytic reactions, some of which exist for both fields, whereas others might see mutual overlap in the future. After a definition of both domains, a detailed approach of the methods, mostly modeling and spectroscopy, will be followed by a detailed analysis of catalytic reactions: hydrogenation, dehydrogenation, hydrogenolysis, oxidative dehydrogenation, alkane and cycloalkane metathesis, methane activation, metathetic oxidation, CO2 activation to cyclic carbonates, imine metathesis, and selective catalytic reduction (SCR) reactions. A prospective resulting from present knowledge is showing the emergence of a new discipline from the overlap between the two areas.
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Affiliation(s)
- Manoja K Samantaray
- King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 , Saudi Arabia
| | - Valerio D'Elia
- School of Molecular Science and Engineering (MSE) , Vidyasirimedhi Institute of Science and Technology (VISTEC) , Wang Chan, Payupnai , 21210 Rayong , Thailand
| | - Eva Pump
- King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 , Saudi Arabia
| | - Laura Falivene
- King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 , Saudi Arabia
| | - Moussab Harb
- King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 , Saudi Arabia
| | - Samy Ould Chikh
- King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 , Saudi Arabia
| | - Luigi Cavallo
- King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 , Saudi Arabia
| | - Jean-Marie Basset
- King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 , Saudi Arabia
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16
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Zhu Y, Ji Y, Ju Z, Yu K, Ferreira PJ, Liu Y, Yu G. Ultrafast Intercalation Enabled by Strong Solvent–Host Interactions: Understanding Solvent Effect at the Atomic Level. Angew Chem Int Ed Engl 2019; 58:17205-17209. [DOI: 10.1002/anie.201908982] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2019] [Revised: 09/11/2019] [Indexed: 11/09/2022]
Affiliation(s)
- Yue Zhu
- Materials Science and Engineering Program and Department of Mechanical Engineering The University of Texas at Austin Austin TX 78712 USA
| | - Yujin Ji
- Materials Science and Engineering Program and Department of Mechanical Engineering The University of Texas at Austin Austin TX 78712 USA
| | - Zhengyu Ju
- Materials Science and Engineering Program and Department of Mechanical Engineering The University of Texas at Austin Austin TX 78712 USA
| | - Kang Yu
- Materials Science and Engineering Program and Department of Mechanical Engineering The University of Texas at Austin Austin TX 78712 USA
- International Iberian Nanotechnology Laboratory Braga 4715-330 Portugal
| | - Paulo J. Ferreira
- International Iberian Nanotechnology Laboratory Braga 4715-330 Portugal
- Mechanical Engineering Department and IDMEC Instituto Superior Técnico University of Lisbon Av. Rovisco Pais Lisboa 1049-001 Portugal
| | - Yuanyue Liu
- Materials Science and Engineering Program and Department of Mechanical Engineering The University of Texas at Austin Austin TX 78712 USA
| | - Guihua Yu
- Materials Science and Engineering Program and Department of Mechanical Engineering The University of Texas at Austin Austin TX 78712 USA
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17
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Steube J, Burkhardt L, Päpcke A, Moll J, Zimmer P, Schoch R, Wölper C, Heinze K, Lochbrunner S, Bauer M. Excited‐State Kinetics of an Air‐Stable Cyclometalated Iron(II) Complex. Chemistry 2019; 25:11826-11830. [DOI: 10.1002/chem.201902488] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2019] [Indexed: 11/07/2022]
Affiliation(s)
- Jakob Steube
- Institute of Inorganic Chemistry and Center for Sustainable, Systems Design (CSSD)University of Paderborn Warburger Straße 100 33098 Paderborn Germany
| | - Lukas Burkhardt
- Institute of Inorganic Chemistry and Center for Sustainable, Systems Design (CSSD)University of Paderborn Warburger Straße 100 33098 Paderborn Germany
| | - Ayla Päpcke
- Institute of Physics and Department of Life, Light and MatterUniversity of Rostock 18051 Rostock Germany
| | - Johannes Moll
- Institute of Inorganic Chemistry and Analytical ChemistryJohannes Gutenberg University Duesbergweg 10–14 55128 Mainz Germany
| | - Peter Zimmer
- Institute of Inorganic Chemistry and Center for Sustainable, Systems Design (CSSD)University of Paderborn Warburger Straße 100 33098 Paderborn Germany
| | - Roland Schoch
- Institute of Inorganic Chemistry and Center for Sustainable, Systems Design (CSSD)University of Paderborn Warburger Straße 100 33098 Paderborn Germany
| | - Christoph Wölper
- Institute for Inorganic Chemistry and Center for Nanointegration, Duisburg-Essen (Cenide)University of Duisburg-Essen Universitätsstraße 5-7 45117 Essen Germany
| | - Katja Heinze
- Institute of Inorganic Chemistry and Analytical ChemistryJohannes Gutenberg University Duesbergweg 10–14 55128 Mainz Germany
| | - Stefan Lochbrunner
- Institute of Physics and Department of Life, Light and MatterUniversity of Rostock 18051 Rostock Germany
| | - Matthias Bauer
- Institute of Inorganic Chemistry and Center for Sustainable, Systems Design (CSSD)University of Paderborn Warburger Straße 100 33098 Paderborn Germany
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18
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Matson BD, McLoughlin EA, Armstrong KC, Waymouth RM, Sarangi R. Effect of Redox Active Ligands on the Electrochemical Properties of Manganese Tricarbonyl Complexes. Inorg Chem 2019; 58:7453-7465. [PMID: 31117629 DOI: 10.1021/acs.inorgchem.9b00652] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The synthesis, structural characterization, and electrochemical behavior of the neutral Mn(azpy)(CO)3(Br) 4 (azpy = 2-phenylazopyridine) complex is reported and compared with its structural analogue Mn(bipy)(CO)3(Br) 1 (bipy = 2,2'-bipyridine). 4 exhibits reversible two-electron reduction at a mild potential (-0.93 V vs Fc+/0 in acetonitrile) in contrast to 1, which exhibits two sequential one-electron reductions at -1.68 V and -1.89 V vs Fc+/0 in acetonitrile. The key electronic structure differences between 1 and 4 that lead to disparate electrochemical properties are investigated using a combination of Mn-K-edge X-ray absorption spectroscopy (XAS), Mn-Kβ X-ray emission spectroscopy (XES), and density functional theory (DFT) on 1, 4, their debrominated analogues, [Mn(L)(CO)3(CH3CN)][CF3SO3] (L = bipy 2, azpy 5), and two-electron reduced counterparts [Mn(bipy)(CO)3][K(18-crown-6)] 3 and [Mn(azpy)(CO)3][Cp2Co] 6. The results reveal differences in the distribution of electrons about the CO and bidentate ligands (bipy and azpy), particularly upon formation of the highly reduced, formally Mn(-1) species. The data show that the degree of ligand noninnocence and resulting redox-activity in Mn(L)(CO)3 type complexes impacts not only the reducing power of such systems, but the speciation of the reduced complexes via perturbation of the monomer-dimer equilibrium in the singly reduced Mn(0) state. This study highlights the role of redox-active ligands in tuning the reactivity of metal centers involved in electrocatalytic transformations.
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Affiliation(s)
- Benjamin D Matson
- Department of Chemistry , Stanford University , Stanford , California 94305 , United States.,Stanford Synchrotron Radiation Lightsource , SLAC National Accelerator Laboratory , Menlo Park , California , United States
| | - Elizabeth A McLoughlin
- Department of Chemistry , Stanford University , Stanford , California 94305 , United States
| | - Keith C Armstrong
- Department of Chemistry , Stanford University , Stanford , California 94305 , United States
| | - Robert M Waymouth
- Department of Chemistry , Stanford University , Stanford , California 94305 , United States
| | - Ritimukta Sarangi
- Stanford Synchrotron Radiation Lightsource , SLAC National Accelerator Laboratory , Menlo Park , California , United States
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19
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Rudolph J, Jacob CR. Computational Insights into the Mechanism of the Selective Catalytic Reduction of NO x : Fe- versus Cu-Exchanged Zeolite Catalysts. ACS OMEGA 2019; 4:7987-7993. [PMID: 31172035 PMCID: PMC6545547 DOI: 10.1021/acsomega.9b00600] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/04/2019] [Accepted: 04/02/2019] [Indexed: 06/09/2023]
Abstract
We computationally investigate the mechanism of the reduction half-cycle of the selective catalytic reduction of nitrogen oxides with ammonia. We compare both Fe- and Cu-exchanged zeolite catalysts and aim at exploring all accessible reaction pathways. From our calculations, a comprehensive picture emerges that unifies several previous mechanistic proposals. We find that both for Fe and for Cu catalysts different reaction pathways are feasible but some of the possible reaction pathways differ in these two cases. Our computational results provide a basis for the interpretation of in situ spectroscopic investigations that can possibly distinguish the different mechanistic pathways.
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20
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Burkhardt L, Mueller C, Groß OA, Sun Y, Sitzmann H, Bauer M. The Bonding Situation in the Dinuclear Tetra-Hydrido Complex [{ 5CpFe} 2(μ-H) 4] Revisited by Hard X-Ray Spectroscopy. Inorg Chem 2019; 58:6609-6618. [PMID: 30596494 DOI: 10.1021/acs.inorgchem.8b03032] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
High energy resolution fluorescence detected XANES (HERFD-XANES) and valence-to-core X-ray emission spectroscopy (VtC-XES) are introduced as powerful tools to investigate hydride-iron interaction, the possible iron-iron bond, and iron spin state of the dinuclear tetra-hydrido complex [{5CpFe}2(μ-H)4] (1H, 5Cp = η5-C5 iPr5) by thoroughly accessing the geometric and electronic structure of this complex in comparison to the nonhydride reference [5CpCpFe] (1, Cp = C5H5). The so far observed most intense hydride induced signals in the pre-edge feature of the HERFD-XANES and in the VtC-XES spectra at the iron K-edge allow a precise analysis of the LUMO and HOMO states, respectively, by application of time-dependent density function theory (TD-DFT) and density functional theory (DFT) calculations. The results of these calculations are further employed to understand the oxidation state, spin states, and potential Fe-Fe bonds in this complex.
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Affiliation(s)
- Lukas Burkhardt
- Faculty of Science , Paderborn University , Warburger Straße 100 , 33098 Paderborn , Germany
| | - Carsten Mueller
- Department of Chemistry , University of Kaiserslautern , Erwin-Schrödinger-Straße 54 , 67663 Kaiserslautern , Germany
| | - Oliver A Groß
- Faculty of Science , Paderborn University , Warburger Straße 100 , 33098 Paderborn , Germany
| | - Yu Sun
- Department of Chemistry , University of Kaiserslautern , Erwin-Schrödinger-Straße 54 , 67663 Kaiserslautern , Germany
| | - Helmut Sitzmann
- Department of Chemistry , University of Kaiserslautern , Erwin-Schrödinger-Straße 54 , 67663 Kaiserslautern , Germany
| | - Matthias Bauer
- Faculty of Science , Paderborn University , Warburger Straße 100 , 33098 Paderborn , Germany.,Center for Sustainable Systems Design (CSSD) , Paderborn University , Warburger Straße 100 , 33098 Paderborn , Germany
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21
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Carlotto S, Finetti P, de Simone M, Coreno M, Casella G, Sambi M, Casarin M. Comparative Experimental and Theoretical Study of the Fe L 2,3-Edges X-ray Absorption Spectroscopy in Three Highly Popular, Low-Spin Organoiron Complexes: [Fe(CO) 5], [(η 5-C 5H 5)Fe(CO)(μ-CO)] 2, and [(η 5-C 5H 5) 2Fe]. Inorg Chem 2019; 58:5844-5857. [PMID: 30998004 DOI: 10.1021/acs.inorgchem.9b00226] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The occupied and unoccupied electronic structures of three highly popular, closed shell organoiron complexes ([Fe(CO)5], [(η5-C5H5)Fe(CO)(μ-CO)]2, and [(η5-C5H5)2Fe]) have been theoretically investigated by taking advantage of density functional theory (DFT) calculations coupled to the isolobal analogy ( Elian et al. Inorg. Chem. 1976 , 15 , 1148 ). The adopted approach allowed us to look into the relative role played by the ligand → Fe donation and the Fe → ligand back-donation in title molecules, as well as to investigate how CO- (terminal or bridging) and [(η5-C5H5)]--based π* orbitals compete when these two ligands are simultaneously present as in [(η5-C5H5)Fe(CO)(μ-CO)]2. Insights into the nature and the strength of the bonding between Fe and the C donor atoms have been gained by exploiting the Nalewajski-Mrozek bond multiplicity index ( Nalewajski et al. Int. J. Quantum Chem. 1994 , 51 , 187 ), which have been found especially sensitive even to tiny bond distance variations. The bonding picture emerging from ground state DFT results proved fruitful to guide the assignment of original, high-resolution, gas-phase L2,3-edges X-ray absorption spectra of the title molecules, which have been modeled by the two-component relativistic time-dependent DFT including spin orbit coupling and correlation effects and taking advantage of the full use of symmetry. Assignments alternative to those reported in the literature for both [Fe(CO)5] and [(η5-C5H5)2Fe] are herein proposed. Despite the high popularity of the investigated molecules, the complementary use of symmetry, orbital, and spectroscopy allowed us to further look into the metal-ligand symmetry-restricted-covalency and the differential-orbital covalency, which characterize them.
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Affiliation(s)
- Silvia Carlotto
- Dipartimento di Scienze Chimiche , Università degli Studi di Padova , Via Francesco Marzolo 1 , 35131 Padova , Italy
| | - Paola Finetti
- Dipartimento di Scienze e Metodi dell'Ingegneria , Università di Modena , Via Università 4 , 41121 Modena , Italy
| | | | | | - Girolamo Casella
- Dipartimento di Scienze della Terra e del Mare , Università degli Studi di Palermo , Via Archirafi 22 , 90123 Palermo , Italy
| | - Mauro Sambi
- Dipartimento di Scienze Chimiche , Università degli Studi di Padova , Via Francesco Marzolo 1 , 35131 Padova , Italy
| | - Maurizio Casarin
- Dipartimento di Scienze Chimiche , Università degli Studi di Padova , Via Francesco Marzolo 1 , 35131 Padova , Italy.,CNR - ICMATE , Via Francesco Marzolo 1 , 35131 Padova , Italy
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22
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Goodwin CAP, Réant BLL, Kragskow JGC, DiMucci IM, Lancaster KM, Mills DP, Sproules S. Heteroleptic samarium(iii) halide complexes probed by fluorescence-detected L 3-edge X-ray absorption spectroscopy. Dalton Trans 2018; 47:10613-10625. [PMID: 29790545 PMCID: PMC6083822 DOI: 10.1039/c8dt01452c] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
The novel series of heteroleptic Sm(iii) halide complexes provides the backdrop for a fluorescence-detected Lα1 X-ray absorption spectroscopic study.
The addition of various oxidants to the near-linear Sm(ii) complex [Sm(N††)2] (1), where N†† is the bulky bis(triisopropylsilyl)amide ligand {N(SiiPr3)2}, afforded a family of heteroleptic three-coordinate Sm(iii) halide complexes, [Sm(N††)2(X)] (X = F, 2-F; Cl, 2-Cl; Br, 2-Br; I, 2-I). In addition, the trinuclear cluster [{Sm(N††)}3(μ2-I)3(μ3-I)2] (3), which formally contains one Sm(ii) and two Sm(iii) centres, was isolated during the synthesis of 2-I. Complexes 2-X are remarkably stable towards ligand redistribution, which is often a facile process for heteroleptic complexes of smaller monodentate ligands in lanthanide chemistry, including the related bis(trimethylsilyl)amide {N(SiMe3)2} (N′′). Complexes 2-X and 3 have been characterised by single crystal X-ray diffraction, elemental analysis, multinuclear NMR, FTIR and electronic spectroscopy. The Lα1 fluorescence-detected X-ray absorption spectra recorded at the Sm L3-edge for 2-X exhibited a resolved pre-edge peak defined as an envelope of quadrupole-allowed 2p → 4f transitions. The X-ray absorption spectral features were successfully reproduced using time-dependent density functional theoretical (TD-DFT) calculations that synergistically support the experimental observations as well as the theoretical model upon which the electronic structure and bonding in these lanthanide complexes is derived.
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Affiliation(s)
- Conrad A P Goodwin
- School of Chemistry, The University of Manchester, Oxford Road, Manchester M13 9PL, UK.
| | - Benjamin L L Réant
- School of Chemistry, The University of Manchester, Oxford Road, Manchester M13 9PL, UK.
| | - Jon G C Kragskow
- School of Chemistry, The University of Manchester, Oxford Road, Manchester M13 9PL, UK.
| | - Ida M DiMucci
- Department of Chemistry and Chemical Biology, Baker Laboratory, Cornell University, Ithaca, New York, 14853, USA.
| | - Kyle M Lancaster
- Department of Chemistry and Chemical Biology, Baker Laboratory, Cornell University, Ithaca, New York, 14853, USA.
| | - David P Mills
- School of Chemistry, The University of Manchester, Oxford Road, Manchester M13 9PL, UK.
| | - Stephen Sproules
- WestCHEM, School of Chemistry, The University of Glasgow, Glasgow G12 8QQ, UK.
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23
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Kubas A, Maszota P. Theoretical Insights into the Unique Ligation of [Fe
4
S
4
] Iron–Sulfur Clusters. Eur J Inorg Chem 2018. [DOI: 10.1002/ejic.201800165] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Adam Kubas
- Institute of Physical Chemistry Polish Academy of Sciences Kasprzaka 44/52 01‐224 Warsaw Poland
| | - Paweł Maszota
- Institute of Physical Chemistry Polish Academy of Sciences Kasprzaka 44/52 01‐224 Warsaw Poland
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24
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Ismail I, Guillemin R, Marchenko T, Travnikova O, Ablett JM, Rueff JP, Piancastelli MN, Simon M, Journel L. Experimental setup for the study of resonant inelastic X-ray scattering of organometallic complexes in gas phase. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2018; 89:063107. [PMID: 29960531 DOI: 10.1063/1.5021536] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
A new setup has been designed and built to study organometallic complexes in gas phase at the third-generation Synchrotron radiation sources. This setup consists of a new homemade computer-controlled gas cell that allows us to sublimate solid samples by accurately controlling the temperature. This cell has been developed to be a part of the high-resolution X-ray emission spectrometer permanently installed at the GALAXIES beamline of the French National Synchrotron Facility SOLEIL. To illustrate the capabilities of the setup, the cell has been successfully used to record high-resolution Kα emission spectra of gas-phase ferrocene Fe(C5H5)2 and to characterize their dependence with the excitation energy. This will allow to extend resonant X-ray emission to different organometallic molecules.
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Affiliation(s)
- I Ismail
- Sorbonne Université, UPMC Univ Paris 06, CNRS, UMR 7614, Laboratoire de Chimie Physique-Matière et Rayonnement, 75005 Paris Cedex 05, France
| | - R Guillemin
- Sorbonne Université, UPMC Univ Paris 06, CNRS, UMR 7614, Laboratoire de Chimie Physique-Matière et Rayonnement, 75005 Paris Cedex 05, France
| | - T Marchenko
- Sorbonne Université, UPMC Univ Paris 06, CNRS, UMR 7614, Laboratoire de Chimie Physique-Matière et Rayonnement, 75005 Paris Cedex 05, France
| | - O Travnikova
- Sorbonne Université, UPMC Univ Paris 06, CNRS, UMR 7614, Laboratoire de Chimie Physique-Matière et Rayonnement, 75005 Paris Cedex 05, France
| | - J M Ablett
- Synchrotron SOLEIL, l'Orme des Merisiers, Saint-Aubin, F-91192 Gif-sur-Yvette Cedex, France
| | - J-P Rueff
- Sorbonne Université, UPMC Univ Paris 06, CNRS, UMR 7614, Laboratoire de Chimie Physique-Matière et Rayonnement, 75005 Paris Cedex 05, France
| | - M-N Piancastelli
- Sorbonne Université, UPMC Univ Paris 06, CNRS, UMR 7614, Laboratoire de Chimie Physique-Matière et Rayonnement, 75005 Paris Cedex 05, France
| | - M Simon
- Sorbonne Université, UPMC Univ Paris 06, CNRS, UMR 7614, Laboratoire de Chimie Physique-Matière et Rayonnement, 75005 Paris Cedex 05, France
| | - L Journel
- Sorbonne Université, UPMC Univ Paris 06, CNRS, UMR 7614, Laboratoire de Chimie Physique-Matière et Rayonnement, 75005 Paris Cedex 05, France
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25
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Zimmer P, Burkhardt L, Friedrich A, Steube J, Neuba A, Schepper R, Müller P, Flörke U, Huber M, Lochbrunner S, Bauer M. The Connection between NHC Ligand Count and Photophysical Properties in Fe(II) Photosensitizers: An Experimental Study. Inorg Chem 2017; 57:360-373. [DOI: 10.1021/acs.inorgchem.7b02624] [Citation(s) in RCA: 55] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Peter Zimmer
- Department
Chemie, Universität Paderborn, Warburger Straße 100, 33098 Paderborn, Germany
| | - Lukas Burkhardt
- Department
Chemie, Universität Paderborn, Warburger Straße 100, 33098 Paderborn, Germany
| | - Aleksej Friedrich
- Institute
of Physics, University of Rostock, Albert-Einstein-Str. 23, 18059 Rostock, Germany
| | - Jakob Steube
- Department
Chemie, Universität Paderborn, Warburger Straße 100, 33098 Paderborn, Germany
| | - Adam Neuba
- Department
Chemie, Universität Paderborn, Warburger Straße 100, 33098 Paderborn, Germany
| | - Rahel Schepper
- Department
Chemie, Universität Paderborn, Warburger Straße 100, 33098 Paderborn, Germany
| | - Patrick Müller
- Department
Chemie, Universität Paderborn, Warburger Straße 100, 33098 Paderborn, Germany
| | - Ulrich Flörke
- Department
Chemie, Universität Paderborn, Warburger Straße 100, 33098 Paderborn, Germany
| | - Marina Huber
- Department
Chemie, Universität Paderborn, Warburger Straße 100, 33098 Paderborn, Germany
| | - Stefan Lochbrunner
- Institute
of Physics, University of Rostock, Albert-Einstein-Str. 23, 18059 Rostock, Germany
| | - Matthias Bauer
- Department
Chemie, Universität Paderborn, Warburger Straße 100, 33098 Paderborn, Germany
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26
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Burkhardt L, Holzwarth M, Plietker B, Bauer M. Detection and Characterization of Hydride Ligands in Iron Complexes by High-Resolution Hard X-ray Spectroscopy and Implications for Catalytic Processes. Inorg Chem 2017; 56:13300-13310. [PMID: 29058447 DOI: 10.1021/acs.inorgchem.7b02063] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Two hydride catalysts [Fe(CO)(dppp)H(NO)] (dppp = 1,3-bis(diphenylphosphino)propane) and [Fe(CO)H(NO)(PPh3)2] in comparison with nonhydride analogues [Fe(dppe)(NO)2] (dppe = 1,3-bis(diphenylphosphino)ethane) and [Fe(NO)2(PPh3)2] are investigated with a combination of valence-to-core X-ray emission spectroscopy (VtC-XES) and high-energy resolution fluorescence detected X-ray absorption near-edge structure (HERFD-XANES). To fully understand the experiments and to obtain precise information about molecular levels being involved in the spectral signals, time-dependent density functional theory (TD-DFT) calculations and ground state density functional theory (DFT) calculations are necessary. An excellent agreement between experiment and theory allows the identification of particular spectral signals of the Fe-H group. Antibonding Fe-H interactions clearly contribute to pre-edge signals in HERFD-XANES spectra, while bonding Fe-H interactions cause characteristic signatures in the VtC-XES spectra. The sensitivity of both methods with respect to the Fe-H distance is demonstrated by a scanning simulation approach. The results open the way to study metal hydride complexes in situ, their formation, and their fate during catalytic reactions, using high-resolution XANES and valence-to-core X-ray emission spectroscopy.
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Affiliation(s)
- Lukas Burkhardt
- Department Chemie, Universität Paderborn , Warburger Straße 100, D-33098 Paderborn, Germany
| | - Michael Holzwarth
- Institut für Organische Chemie, Universität Stuttgart , Pfaffenwaldring 55, D-70569 Stuttgart, Germany
| | - Bernd Plietker
- Institut für Organische Chemie, Universität Stuttgart , Pfaffenwaldring 55, D-70569 Stuttgart, Germany
| | - Matthias Bauer
- Department Chemie, Universität Paderborn , Warburger Straße 100, D-33098 Paderborn, Germany
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27
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Atkins AJ, Talotta F, Freitag L, Boggio-Pasqua M, González L. Assessing Excited State Energy Gaps with Time-Dependent Density Functional Theory on Ru(II) Complexes. J Chem Theory Comput 2017; 13:4123-4145. [DOI: 10.1021/acs.jctc.7b00379] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Andrew J. Atkins
- Institute
of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, A-1090 Vienna, Austria
| | - Francesco Talotta
- Institute
of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, A-1090 Vienna, Austria
- Laboratoire de
Chimie et Physique Quantiques (UMR5626), CNRS et Université
de Toulouse 3, 31062 Toulouse, France
| | - Leon Freitag
- Institute
of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, A-1090 Vienna, Austria
| | - Martial Boggio-Pasqua
- Laboratoire de
Chimie et Physique Quantiques (UMR5626), CNRS et Université
de Toulouse 3, 31062 Toulouse, France
| | - Leticia González
- Institute
of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, A-1090 Vienna, Austria
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28
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Godehusen K, Richter T, Zimmermann P, Wernet P. Iron L-Edge Absorption Spectroscopy of Iron Pentacarbonyl and Ferrocene in the Gas Phase. J Phys Chem A 2017; 121:66-72. [PMID: 27992225 DOI: 10.1021/acs.jpca.6b10399] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
Fe L-edge X-ray absorption spectra of gas-phase iron pentacarbonyl and ferrocene measured in total-ion yield mode are reported. Comparison to previously published spectra of free iron atoms and gaseous iron chloride demonstrates how the interplay of local atomic multiplet effects and orbital interactions in the metal-ligand bonds varies for the different systems. We find changes in the degree of metal-ligand covalency to be reflected in the measured 2p absorption onset. Orbital- or state-specific fragmentation is furthermore investigated in iron pentacarbonyl and ferrocene by analyzing the partial-ion-yield spectra at the Fe L-edge. Strong dependence of the yields of different fragments is observed in ferrocene in contrast to iron pentacarbonyl. This difference is attributed to the different degrees to which the 2p core hole is screened in the two systems and to which charge is rearranged in the Auger final states. We provide experimental benchmark spectra for new ab initio approaches for calculating metal L-edge absorption spectra of metal complexes.
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Affiliation(s)
- Kai Godehusen
- Helmholtz-Zentrum Berlin , Hahn-Meitner-Platz 1, 14109 Berlin, Germany
| | - Tobias Richter
- European Spallation Source , Ole Maaløes Vej 3, 2200 Copenhagen, Denmark
| | - Peter Zimmermann
- Technische Universität Berlin , Hardenbergstraße 36, 10623 Berlin, Germany
| | - Philippe Wernet
- Institute for Methods and Instrumentation for Synchrotron Radiation Research, Helmholtz-Zentrum Berlin für Materialien und Energie GmbH , Albert-Einstein-Straße 15, 12489 Berlin, Germany
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29
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Butorin SM, Kvashnina KO, Prieur D, Rivenet M, Martin PM. Characteristics of chemical bonding of pentavalent uranium in La-doped UO2. Chem Commun (Camb) 2017; 53:115-118. [DOI: 10.1039/c6cc07684j] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
HERFD-XAS studies clearly reveal U(v) formation in the cubic environment in UO2 as a result of La doping.
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Affiliation(s)
- Sergei M. Butorin
- Molecular and Condensed Matter Physics
- Department of Physics and Astronomy
- Uppsala University
- SE-751 20 Uppsala
- Sweden
| | - Kristina O. Kvashnina
- The European Synchrotron
- CS40220
- 38043 Grenoble Cedex 9
- France
- Helmholtz Zentrum Dresden-Rossendorf (HZDR)
| | - Damien Prieur
- European Commission
- Joint Research Centre
- Institute for Transuranium Elements
- D-76125 Karlsruhe
- Germany
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30
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Rees JA, Wandzilak A, Maganas D, Wurster NIC, Hugenbruch S, Kowalska JK, Pollock CJ, Lima FA, Finkelstein KD, DeBeer S. Experimental and theoretical correlations between vanadium K-edge X-ray absorption and Kβ emission spectra. J Biol Inorg Chem 2016; 21:793-805. [PMID: 27251139 PMCID: PMC4989026 DOI: 10.1007/s00775-016-1358-7] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2016] [Accepted: 04/29/2016] [Indexed: 11/28/2022]
Abstract
A series of vanadium compounds was studied by K-edge X-ray absorption (XAS) and K[Formula: see text] X-ray emission spectroscopies (XES). Qualitative trends within the datasets, as well as comparisons between the XAS and XES data, illustrate the information content of both methods. The complementary nature of the chemical insight highlights the success of this dual-technique approach in characterizing both the structural and electronic properties of vanadium sites. In particular, and in contrast to XAS or extended X-ray absorption fine structure (EXAFS), we demonstrate that valence-to-core XES is capable of differentiating between ligating atoms with the same identity but different bonding character. Finally, density functional theory (DFT) and time-dependent DFT calculations enable a more detailed, quantitative interpretation of the data. We also establish correction factors for the computational protocols through calibration to experiment. These hard X-ray methods can probe vanadium ions in any oxidation or spin state, and can readily be applied to sample environments ranging from solid-phase catalysts to biological samples in frozen solution. Thus, the combined XAS and XES approach, coupled with DFT calculations, provides a robust tool for the study of vanadium atoms in bioinorganic chemistry.
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Affiliation(s)
- Julian A Rees
- Max Planck Institute for Chemical Energy Conversion, Stiftstr. 34-36, 45470, Mülheim an der Ruhr, Germany
- Department of Chemistry, University of Washington, Box 351700, Seattle, WA, 98195-1700, USA
| | - Aleksandra Wandzilak
- Max Planck Institute for Chemical Energy Conversion, Stiftstr. 34-36, 45470, Mülheim an der Ruhr, Germany
- Faculty of Physics and Applied Computer Science, AGH University of Science and Technology, al. Mickiewicza 30, 30-059, Kraków, Poland
| | - Dimitrios Maganas
- Max Planck Institute for Chemical Energy Conversion, Stiftstr. 34-36, 45470, Mülheim an der Ruhr, Germany
| | - Nicole I C Wurster
- Max Planck Institute for Chemical Energy Conversion, Stiftstr. 34-36, 45470, Mülheim an der Ruhr, Germany
| | - Stefan Hugenbruch
- Max Planck Institute for Chemical Energy Conversion, Stiftstr. 34-36, 45470, Mülheim an der Ruhr, Germany
| | - Joanna K Kowalska
- Max Planck Institute for Chemical Energy Conversion, Stiftstr. 34-36, 45470, Mülheim an der Ruhr, Germany
| | - Christopher J Pollock
- Max Planck Institute for Chemical Energy Conversion, Stiftstr. 34-36, 45470, Mülheim an der Ruhr, Germany
- Department of Chemistry, The Pennsylvania State University, University Park, PA, 16802, USA
| | - Frederico A Lima
- Centro Nacional de Pesquisa em Energia e Materiais, Laboratório Nacional de Luz Síncrotron, Rua Giuseppe Máximo Scolfaro 10000, Campinas, SP, 13083-970, Brazil
| | - Kenneth D Finkelstein
- Cornell High Energy Synchrotron Source, Wilson Laboratory, Cornell University, Ithaca, NY, 14853, USA
| | - Serena DeBeer
- Max Planck Institute for Chemical Energy Conversion, Stiftstr. 34-36, 45470, Mülheim an der Ruhr, Germany.
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, 14853, USA.
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31
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Kim KR, Lee KS, Ahn CY, Yu SH, Sung YE. Discharging a Li-S battery with ultra-high sulphur content cathode using a redox mediator. Sci Rep 2016; 6:32433. [PMID: 27573528 PMCID: PMC5004098 DOI: 10.1038/srep32433] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2016] [Accepted: 08/09/2016] [Indexed: 11/21/2022] Open
Abstract
Lithium-sulphur batteries are under intense research due to the high specific capacity and low cost. However, several problems limit their commercialization. One of them is the insulating nature of sulphur, which necessitates a large amount of conductive agent and binder in the cathode, reducing the effective sulphur load as well as the energy density. Here we introduce a redox mediator, cobaltocene, which acts as an electron transfer agent between the conductive surface and the polysulphides in the electrolyte. We confirmed that cobaltocene could effectively convert polysulphides to Li2S using scanning electron microscope, X-ray absorption near-edge structure and in-situ X-ray diffraction studies. This redox mediator enabled excellent electrochemical performance in a cathode with ultra-high sulphur content (80 wt%). It delivered 400 mAh g−1cathode capacity after 50 cycles, which is equivalent to 800 mAh g−1S in a typical cathode with 50 wt% sulphur. Furthermore, the volumetric capacity was also dramatically improved.
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Affiliation(s)
- Kwi Ryong Kim
- Center for Nanoparticle Research, Institute for Basic Science (IBS), Seoul 151-742, South Korea.,School of Chemical and Biological Engineering, Seoul National University, Seoul 151-742, South Korea
| | - Kug-Seung Lee
- Beamline Department, Pohang Accelerator Laboratory (PAL), Pohang 790-784, South Korea
| | - Chi-Yeong Ahn
- Center for Nanoparticle Research, Institute for Basic Science (IBS), Seoul 151-742, South Korea.,School of Chemical and Biological Engineering, Seoul National University, Seoul 151-742, South Korea
| | - Seung-Ho Yu
- Center for Nanoparticle Research, Institute for Basic Science (IBS), Seoul 151-742, South Korea.,School of Chemical and Biological Engineering, Seoul National University, Seoul 151-742, South Korea
| | - Yung-Eun Sung
- Center for Nanoparticle Research, Institute for Basic Science (IBS), Seoul 151-742, South Korea.,School of Chemical and Biological Engineering, Seoul National University, Seoul 151-742, South Korea
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32
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List NH, Saue T, Norman P. Rotationally averaged linear absorption spectra beyond the electric-dipole approximation. Mol Phys 2016. [DOI: 10.1080/00268976.2016.1187773] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Affiliation(s)
- Nanna Holmgaard List
- Department of Physics, Chemistry and Biology, Linköping University, SE-581 83 Linköping, Sweden
| | - Trond Saue
- Laboratoire de Chimie et Physique Quantiques, UMR 5626 — CNRS/Université Toulouse III (Paul Sabatier), 31062 Toulouse Cedex 09, France
| | - Patrick Norman
- Department of Physics, Chemistry and Biology, Linköping University, SE-581 83 Linköping, Sweden
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33
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Petric M, Bohinc R, Bučar K, Nowak SH, Žitnik M, Kavčič M. Electronic Structure of Third-Row Elements in Different Local Symmetries Studied by Valence-to-Core X-ray Emission Spectroscopy. Inorg Chem 2016; 55:5328-36. [PMID: 27176734 DOI: 10.1021/acs.inorgchem.6b00237] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Marko Petric
- J. Stefan Institute , Jamova 39, SI-1000 Ljubljana, Slovenia.,Jozef Stefan International Postgraduate School , Jamova cesta 39, 1000 Ljubljana, Slovenia
| | - Rok Bohinc
- J. Stefan Institute , Jamova 39, SI-1000 Ljubljana, Slovenia
| | - Klemen Bučar
- J. Stefan Institute , Jamova 39, SI-1000 Ljubljana, Slovenia
| | - Stanisław H Nowak
- Institute for Scientific Instruments GmbH , 12489 Berlin, Germany.,Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory , 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Matjaž Žitnik
- J. Stefan Institute , Jamova 39, SI-1000 Ljubljana, Slovenia.,Faculty of Mathematics and Physics, University of Ljubljana , Jadranska ulica 19, SI-1000 Ljubljana, Slovenia
| | - Matjaž Kavčič
- J. Stefan Institute , Jamova 39, SI-1000 Ljubljana, Slovenia
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34
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Günter T, Doronkin DE, Boubnov A, Carvalho HWP, Casapu M, Grunwaldt JD. The SCR of NOx with NH3 Examined by Novel X-ray Emission and X-ray Absorption Methods. Top Catal 2016. [DOI: 10.1007/s11244-016-0561-7] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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35
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Roper IPE, Besley NA. The effect of basis set and exchange-correlation functional on time-dependent density functional theory calculations within the Tamm-Dancoff approximation of the x-ray emission spectroscopy of transition metal complexes. J Chem Phys 2016; 144:114104. [DOI: 10.1063/1.4943862] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Ian P. E. Roper
- School of Chemistry, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom
| | - Nicholas A. Besley
- School of Chemistry, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom
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36
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Schmidt MW, Hull EA, Windus TL. Valence Virtual Orbitals: An Unambiguous ab Initio Quantification of the LUMO Concept. J Phys Chem A 2015; 119:10408-27. [DOI: 10.1021/acs.jpca.5b06893] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Michael W. Schmidt
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, United States
| | - Emily A. Hull
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, United States
| | - Theresa L. Windus
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, United States
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37
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Rees JA, Martin-Diaconescu V, Kovacs JA, DeBeer S. X-ray Absorption and Emission Study of Dioxygen Activation by a Small-Molecule Manganese Complex. Inorg Chem 2015; 54:6410-22. [PMID: 26061165 PMCID: PMC4494871 DOI: 10.1021/acs.inorgchem.5b00699] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Manganese K-edge X-ray absorption (XAS) and Kβ emission (XES) spectroscopies were used to investigate the factors contributing to O-O bond activation in a small-molecule system. The recent structural characterization of a metastable peroxo-bridged dimeric Mn(III)2 complex derived from dioxygen has provided the first opportunity to obtain X-ray spectroscopic data on this type of species. Ground state and time-dependent density functional theory calculations have provided further insight into the nature of the transitions in XAS pre-edge and valence-to-core (VtC) XES spectral regions. An experimentally validated electronic structure description has also enabled the determination of structural and electronic factors that govern peroxo bond activation, and have allowed us to propose both a rationale for the metastability of this unique compound, as well as potential future ligand designs which may further promote or inhibit O-O bond scission. Finally, we have explored the potential of VtC XES as an element-selective probe of both the coordination mode and degree of activation of peroxomanganese adducts. The comparison of these results to a recent VtC XES study of iron-mediated dintrogen activation helps to illustrate the factors that may determine the success of this spectroscopic method for future studies of small-molecule activation at transition metal sites.
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Affiliation(s)
- Julian A. Rees
- Max-Planck-Institut für Chemische Energiekonversion, Stiftstrasse 34-36, Mülheim an der Ruhr D-45470, Germany
- Department of Chemistry, University of Washington, Box 351700, Seattle, Washington 98195-1700, United States
| | - Vlad Martin-Diaconescu
- Max-Planck-Institut für Chemische Energiekonversion, Stiftstrasse 34-36, Mülheim an der Ruhr D-45470, Germany
| | - Julie A. Kovacs
- Department of Chemistry, University of Washington, Box 351700, Seattle, Washington 98195-1700, United States
| | - Serena DeBeer
- Max-Planck-Institut für Chemische Energiekonversion, Stiftstrasse 34-36, Mülheim an der Ruhr D-45470, Germany
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853, United States
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38
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Boubnov A, Lichtenberg H, Mangold S, Grunwaldt JD. Identification of the iron oxidation state and coordination geometry in iron oxide- and zeolite-based catalysts using pre-edge XAS analysis. JOURNAL OF SYNCHROTRON RADIATION 2015; 22:410-26. [PMID: 25723943 DOI: 10.1107/s1600577514025880] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2014] [Accepted: 11/26/2014] [Indexed: 05/15/2023]
Abstract
Analysis of the oxidation state and coordination geometry using pre-edge analysis is attractive for heterogeneous catalysis and materials science, especially for in situ and time-resolved studies or highly diluted systems. In the present study, focus is laid on iron-based catalysts. First a systematic investigation of the pre-edge region of the Fe K-edge using staurolite, FePO4, FeO and α-Fe2O3 as reference compounds for tetrahedral Fe(2+), tetrahedral Fe(3+), octahedral Fe(2+) and octahedral Fe(3+), respectively, is reported. In particular, high-resolution and conventional X-ray absorption spectra are compared, considering that in heterogeneous catalysis and material science a compromise between high-quality spectroscopic data acquisition and simultaneous analysis of functional properties is required. Results, which were obtained from reference spectra acquired with different resolution and quality, demonstrate that this analysis is also applicable to conventionally recorded pre-edge data. For this purpose, subtraction of the edge onset is preferentially carried out using an arctangent and a first-degree polynomial, independent of the resolution and quality of the data. For both standard and high-resolution data, multiplet analysis of pre-edge features has limitations due to weak transitions that cannot be identified. On the other hand, an arbitrary empirical peak fitting assists the analysis in that non-local transitions can be isolated. The analysis of the oxidation state and coordination geometry of the Fe sites using a variogram-based method is shown to be effective for standard-resolution data and leads to the same results as for high-resolution spectra. This method, validated by analysing spectra of reference compounds and their well defined mixtures, is finally applied to track structural changes in a 1% Fe/Al2O3 and a 0.5% Fe/BEA zeolite catalyst during reduction in 5% H2/He. The results, hardly accessible by other techniques, show that Fe(3+) is transformed into Fe(2+), while the local Fe-O coordination number of 4-5 is maintained, suggesting that the reduction involves a rearrangement of the oxygen neighbours rather than their removal. In conclusion, the variogram-based analysis of Fe K-edge spectra proves to be very useful in catalysis research.
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Affiliation(s)
- Alexey Boubnov
- Institute for Chemical Technology and Polymer Chemistry, Karlsruhe Institute of Technology, Kaiserstrasse 12, Karlsruhe 76131, Germany
| | - Henning Lichtenberg
- Institute for Chemical Technology and Polymer Chemistry, Karlsruhe Institute of Technology, Kaiserstrasse 12, Karlsruhe 76131, Germany
| | - Stefan Mangold
- Synchrotron Radiation Facility ANKA, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, Eggenstein-Leopoldshafen 76344, Germany
| | - Jan Dierk Grunwaldt
- Institute for Chemical Technology and Polymer Chemistry, Karlsruhe Institute of Technology, Kaiserstrasse 12, Karlsruhe 76131, Germany
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39
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Martin-Diaconescu V, Gennari M, Gerey B, Tsui E, Kanady J, Tran R, Pécaut J, Maganas D, Krewald V, Gouré E, Duboc C, Yano J, Agapie T, Collomb MN, DeBeer S. Ca K-edge XAS as a probe of calcium centers in complex systems. Inorg Chem 2015; 54:1283-92. [PMID: 25492398 PMCID: PMC4331723 DOI: 10.1021/ic501991e] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2014] [Indexed: 12/21/2022]
Abstract
Herein, Ca K-edge X-ray absorption spectroscopy (XAS) is developed as a means to characterize the local environment of calcium centers. The spectra for six, seven, and eight coordinate inorganic and molecular calcium complexes were analyzed and determined to be primarily influenced by the coordination environment and site symmetry at the calcium center. The experimental results are closely correlated to time-dependent density functional theory (TD-DFT) calculations of the XAS spectra. The applicability of this methodology to complex systems was investigated using structural mimics of the oxygen-evolving complex (OEC) of PSII. It was found that Ca K-edge XAS is a sensitive probe for structural changes occurring in the cubane heterometallic cluster due to Mn oxidation. Future applications to the OEC are discussed.
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Affiliation(s)
- Vlad Martin-Diaconescu
- Max Planck Institute
for Chemical Energy Conversion, Stiftstrasse 34-36, D-45470 Mülheim an der Ruhr, Germany
| | - Marcello Gennari
- Univ. Grenoble Alpes, DCM and
CNRS, DCM, F-38000 Grenoble, France
| | - Bertrand Gerey
- Univ. Grenoble Alpes, DCM and
CNRS, DCM, F-38000 Grenoble, France
| | - Emily Tsui
- California Institute of
Technology, Department of Chemistry, Pasadena, California 91125, United States
| | - Jacob Kanady
- California Institute of
Technology, Department of Chemistry, Pasadena, California 91125, United States
| | - Rosalie Tran
- Lawrence Berkeley National Laboratory − Physical Biosciences Division, Berkeley, California 94720, United States
| | - Jacques Pécaut
- Laboratoire de Reconnaissance Ionique
et Chimie de Coordination (LCIB, SCIB, INAC, CEA Grenoble), 38054 Grenoble
Cedex 9, France
| | - Dimitrios Maganas
- Max Planck Institute
for Chemical Energy Conversion, Stiftstrasse 34-36, D-45470 Mülheim an der Ruhr, Germany
| | - Vera Krewald
- Max Planck Institute
for Chemical Energy Conversion, Stiftstrasse 34-36, D-45470 Mülheim an der Ruhr, Germany
| | - Eric Gouré
- Univ. Grenoble Alpes, DCM and
CNRS, DCM, F-38000 Grenoble, France
| | - Carole Duboc
- Univ. Grenoble Alpes, DCM and
CNRS, DCM, F-38000 Grenoble, France
| | - Junko Yano
- Lawrence Berkeley National Laboratory − Physical Biosciences Division, Berkeley, California 94720, United States
| | - Theodor Agapie
- California Institute of
Technology, Department of Chemistry, Pasadena, California 91125, United States
| | | | - Serena DeBeer
- Max Planck Institute
for Chemical Energy Conversion, Stiftstrasse 34-36, D-45470 Mülheim an der Ruhr, Germany
- Department of Chemistry and Chemical
Biology, Cornell University, Ithaca, New York 14853, United States
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40
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Atkins AJ, Bauer M, Jacob CR. High-resolution X-ray absorption spectroscopy of iron carbonyl complexes. Phys Chem Chem Phys 2015; 17:13937-48. [DOI: 10.1039/c5cp01045d] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We apply high-energy-resolution fluorescence-detected (HERFD) X-ray absorption near-edge structure (XANES) spectroscopy to study iron carbonyl complexes.
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Affiliation(s)
- Andrew J. Atkins
- Karlsruhe Institute of Technology (KIT)
- Center for Functional Nanostructures and Institute of Physical Chemistry
- 76131 Karlsruhe
- Germany
| | - Matthias Bauer
- Universität Paderborn
- Naturwissenschaftliche Fakultät
- Department Chemie
- 33098 Paderborn
- Germany
| | - Christoph R. Jacob
- Karlsruhe Institute of Technology (KIT)
- Center for Functional Nanostructures and Institute of Physical Chemistry
- 76131 Karlsruhe
- Germany
- TU Braunschweig
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41
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Gallo E, Glatzel P. Valence to core X-ray emission spectroscopy. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2014; 26:7730-46. [PMID: 24861500 DOI: 10.1002/adma.201304994] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2013] [Revised: 04/15/2014] [Indexed: 05/20/2023]
Abstract
This Progress Report discusses the chemical sensitivity of Kβ valence to core X-ray emission spectroscopy (vtc-XES) and its applications for investigating 3d-transition-metal based materials. Vtc-XES can be used for ligand identification and for the characterization of the valence electronic levels. The technique provides information that is similar to valence band photoemission spectroscopy but the sample environment can be chosen freely and thus allows measurements in presence of gases and liquids and it can be applied for measurements under in situ/operando or extreme conditions. The theoretical basis of the technique is presented using a one-electron approach and the vtc-XES spectral features are interpreted using ground state density functional theory calculations. Some recent results obtained by vtc-XES in various scientific fields are discussed to demonstrate the potential and future applications of this technique. Resonant X-ray emission spectroscopy is briefly introduced with some applications for the study of 3d and 5d-transition-metal based systems.
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Affiliation(s)
- Erik Gallo
- ESRF - The European Synchrotron, 71 Avenue des Martyres, Grenoble, 38000, France
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Boubnov A, Carvalho HWP, Doronkin DE, Günter T, Gallo E, Atkins AJ, Jacob CR, Grunwaldt JD. Selective Catalytic Reduction of NO Over Fe-ZSM-5: Mechanistic Insights by Operando HERFD-XANES and Valence-to-Core X-ray Emission Spectroscopy. J Am Chem Soc 2014; 136:13006-15. [DOI: 10.1021/ja5062505] [Citation(s) in RCA: 109] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Alexey Boubnov
- Institute
for Chemical Technology and Polymer Chemistry, Karlsruhe Institute of Technology, Engesserstr. 20, D-76131 Karlsruhe, Germany
- Institute
of Catalysis Research and Technology, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, D-76344 Eggenstein-Leopoldshafen, Germany
| | - Hudson W. P. Carvalho
- Institute
for Chemical Technology and Polymer Chemistry, Karlsruhe Institute of Technology, Engesserstr. 20, D-76131 Karlsruhe, Germany
| | - Dmitry E. Doronkin
- Institute
for Chemical Technology and Polymer Chemistry, Karlsruhe Institute of Technology, Engesserstr. 20, D-76131 Karlsruhe, Germany
- Institute
of Catalysis Research and Technology, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, D-76344 Eggenstein-Leopoldshafen, Germany
| | - Tobias Günter
- Institute
for Chemical Technology and Polymer Chemistry, Karlsruhe Institute of Technology, Engesserstr. 20, D-76131 Karlsruhe, Germany
| | - Erik Gallo
- European Synchrotron Radiation Facility, 6 rue Jules Horowitz, BP 220, F-38043 Grenoble Cedex, France
| | - Andrew J. Atkins
- Center
for Functional Nanostructures and Institute of Physical Chemistry, Karlsruhe Institute of Technology, Wolfgang-Gaede-Str. 1a, D-76131 Karlsruhe, Germany
| | - Christoph R. Jacob
- Center
for Functional Nanostructures and Institute of Physical Chemistry, Karlsruhe Institute of Technology, Wolfgang-Gaede-Str. 1a, D-76131 Karlsruhe, Germany
| | - Jan-Dierk Grunwaldt
- Institute
for Chemical Technology and Polymer Chemistry, Karlsruhe Institute of Technology, Engesserstr. 20, D-76131 Karlsruhe, Germany
- Institute
of Catalysis Research and Technology, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, D-76344 Eggenstein-Leopoldshafen, Germany
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Bauer M. HERFD-XAS and valence-to-core-XES: new tools to push the limits in research with hard X-rays? Phys Chem Chem Phys 2014; 16:13827-37. [PMID: 24905791 DOI: 10.1039/c4cp00904e] [Citation(s) in RCA: 118] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
In this perspective, the HERFD-XANES (high energy resolution fluorescence detected X-ray absorption near edge structure) and Kβ2,5- or V2C-XES (valence-to-core X-ray emission spectroscopy) methods are discussed as new and powerful tools for chemical research with hard X-rays. This includes a brief survey of the underlying physical processes and the introduction of experimental issues. The potential of both methods to overcome limitations of conventional XAS (X-ray absorption spectroscopy) and to push the limits for obtaining new information about the electronic and geometric structures of metal centers, in the solid state structure or heterogeneous catalysts, but also in metal complexes and homogeneous catalysts, is discussed by presenting a survey of representative references and recent own studies, rounded off by a conclusion and outlook.
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Affiliation(s)
- Matthias Bauer
- Department Chemie, Universität Paderborn, Warburger Str. 100, 33098 Paderborn, Germany.
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Delgado-Jaime MU, DeBeer S, Bauer M. Valence-to-core X-ray emission spectroscopy of iron-carbonyl complexes: implications for the examination of catalytic intermediates. Chemistry 2013; 19:15888-97. [PMID: 24222392 DOI: 10.1002/chem.201301913] [Citation(s) in RCA: 58] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2013] [Indexed: 11/12/2022]
Abstract
Valence-to-core X-ray emission spectroscopy (V2C XES) has been applied to a series of compounds relevant to both homogeneous catalysts and intermediates in heterogeneous reactions, namely [Fe(CO)5], [Fe2(CO)9], [Fe3(CO)12], [Fe(CO)3(cod)] (cod=cyclo-octadienyl), [Fe2Cp2(CO)4] (Cp=cyclo-pentadienyl), [Fe2Cp*2(CO)4] (Cp*=tetramethylcyclopentadienyl), and [FeCp(CO)2(thf)][B(ArF)4] (ArF=pentafluorophenyl). DFT calculations of the V2C XES spectra show very good agreement with experiment, which allows for an in depth analysis of the origins of the observed spectral signatures. It is demonstrated that the observed spectral features can be broken down into specific ligand and metal fragment contributions. The relative intensities of the observed features are further explained through a quantitative investigation of the metal 3p and 4p contributions to the spectra. The ability to use V2C XES to separate carbonyl, hydrocarbon, and solvent contributions is highlighted.
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The role of Hartree–Fock exchange in the simulation of X-ray absorption spectra: A study of photoexcited. Chem Phys Lett 2013. [DOI: 10.1016/j.cplett.2013.06.060] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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