1
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Kjærsgaard NL, Nielsen TB, Gothelf KV. Chemical Conjugation to Less Targeted Proteinogenic Amino Acids. Chembiochem 2022; 23:e202200245. [PMID: 35781760 PMCID: PMC9796363 DOI: 10.1002/cbic.202200245] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2022] [Revised: 07/01/2022] [Indexed: 01/01/2023]
Abstract
Protein bioconjugates are in high demand for applications in biomedicine, diagnostics, chemical biology and bionanotechnology. Proteins are large and sensitive molecules containing multiple different functional groups and in particular nucleophilic groups. In bioconjugation reactions it can therefore be challenging to obtain a homogeneous product in high yield. Numerous strategies for protein conjugation have been developed, of which a vast majority target lysine, cysteine and to a lesser extend tyrosine. Likewise, several methods that involve recombinantly engineered protein tags have been reported. In recent years a number of methods have emerged for chemical bioconjugation to other amino acids and in this review, we present the progress in this area.
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Affiliation(s)
- Nanna L. Kjærsgaard
- Center for Multifunctional Biomolecular Drug Design Interdisciplinary Nanoscience CenterAarhus UniversityGustav Wieds Vej 148000Aarhus CDenmark
- Department of ChemistryAarhus UniversityLangelandsgade 1408000Aarhus CDenmark
| | | | - Kurt V. Gothelf
- Center for Multifunctional Biomolecular Drug Design Interdisciplinary Nanoscience CenterAarhus UniversityGustav Wieds Vej 148000Aarhus CDenmark
- Department of ChemistryAarhus UniversityLangelandsgade 1408000Aarhus CDenmark
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2
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Roy SK, Purkait A, Shome R, Das S, Das D, Ghosh SS, Jana CK. Proline selective labeling via on-site construction of naphthoxazole (NapOx). Chem Commun (Camb) 2022; 58:5909-5912. [PMID: 35475487 DOI: 10.1039/d2cc01268e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Chemoselective construction of naphthoxazoles (NapOx) via a three-component annulation reaction enables proline selective labeling of peptides in solution or in solid-phase synthesis. The fluorogenic peptides possess low cytotoxicity, efficient cell membrane permeability and excellent bioimaging potential for biomedical applications.
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Affiliation(s)
- Subhra Kanti Roy
- Department of Chemistry, Indian Institute of Technology Guwahati, 781039, India.
| | - Anisha Purkait
- Department of Chemistry, Indian Institute of Technology Guwahati, 781039, India.
| | - Rajib Shome
- Department of Biosciences and Engineering, Indian Institute of Technology Guwahati, 781039, India
| | - Saurav Das
- Department of Chemistry, Indian Institute of Technology Guwahati, 781039, India.
| | - Debapratim Das
- Department of Chemistry, Indian Institute of Technology Guwahati, 781039, India.
| | - Siddhartha Sankar Ghosh
- Department of Biosciences and Engineering, Indian Institute of Technology Guwahati, 781039, India
| | - Chandan K Jana
- Department of Chemistry, Indian Institute of Technology Guwahati, 781039, India.
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3
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Revealing functional significance of interleukin‐2 glycoproteoforms enabled by expressed serine ligation. CHINESE J CHEM 2022. [DOI: 10.1002/cjoc.202100914] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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4
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Chen G, Umatheva U, Pagano J, Yu D, Ghose S, Li Z, Ghosh R. High-resolution purification of a therapeutic PEGylated protein using a cuboid packed-bed device. J Chromatogr A 2020; 1630:461524. [PMID: 32920248 DOI: 10.1016/j.chroma.2020.461524] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2020] [Revised: 08/15/2020] [Accepted: 09/01/2020] [Indexed: 12/18/2022]
Abstract
PEGylated proteins which are a class of protein-synthetic polymer conjugates that have shown significant promise in the area of biotherapeutics are difficult to purify. A cuboid packed-bed device was used to purify a mono-PEGylated therapeutic protein from impurities such as high molecular weight (HMW) species (e.g., tri- and/or di-PEGylated forms), and low molecular weight (LMW) species such as unreacted protein and polyethylene glycol (or PEG). The separation efficiency of this device was compared with that of an equivalent cylindrical column. The effects of operating conditions such as flow rate, buffer composition, elution gradient, and column loading were systematically compared. An equivalent column with the same bed volume, same resin and same bed height was served as control. In mono-PEGylated protein purifications experiments, the cuboid packed-bed device exhibited sharper peaks and gave better resolution at all conditions examined in this study. The purity of mono-PEGylated protein in the samples collected from the cuboid packed-bed device and the column were comparable, i.e., 98.1% and 97.9% respectively. The recovery of mono-PEGylated protein in the pooled eluate from the cuboid packed-bed device was 31.7% greater than that recovered in the pooled eluate from the column. Therefore, significantly higher recovery of mono-PEGylated protein was obtained with the cuboid packed-bed device while maintaining the same purity specification as obtained with the column.
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Affiliation(s)
- Guoqiang Chen
- Department of Chemical Engineering, McMaster University, 1280 Main Street West, Hamilton, Ontario L8S 4L7, Canada
| | - Umatheny Umatheva
- Department of Chemical Engineering, McMaster University, 1280 Main Street West, Hamilton, Ontario L8S 4L7, Canada
| | - John Pagano
- Biologics Process Development, Bristol-Myers Squibb, 3510F-BDB231, 38 Jackson Road, Devens MA 01434, United States
| | - Deqiang Yu
- Biologics Process Development, Bristol-Myers Squibb, 3510F-BDB231, 38 Jackson Road, Devens MA 01434, United States
| | - Sanchayita Ghose
- Biologics Process Development, Bristol-Myers Squibb, 3510F-BDB231, 38 Jackson Road, Devens MA 01434, United States
| | - Zhengjian Li
- Biologics Process Development, Bristol-Myers Squibb, 3510F-BDB231, 38 Jackson Road, Devens MA 01434, United States
| | - Raja Ghosh
- Department of Chemical Engineering, McMaster University, 1280 Main Street West, Hamilton, Ontario L8S 4L7, Canada.
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5
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Wang S, Thopate YA, Zhou Q, Wang P. Chemical Protein Synthesis by Native Chemical Ligation and Variations Thereof. CHINESE J CHEM 2019. [DOI: 10.1002/cjoc.201900246] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Siyao Wang
- Shanghai Key Laboratory for Molecular Engineering of Chiral Drugs, School of Chemistry and Chemical EngineeringShanghai Jiao Tong University 800 Dongchuan Road, Shanghai 200240 China
| | - Yogesh Abaso Thopate
- Shanghai Key Laboratory for Molecular Engineering of Chiral Drugs, School of Chemistry and Chemical EngineeringShanghai Jiao Tong University 800 Dongchuan Road, Shanghai 200240 China
| | - Qingqing Zhou
- Shanghai Key Laboratory for Molecular Engineering of Chiral Drugs, School of Chemistry and Chemical EngineeringShanghai Jiao Tong University 800 Dongchuan Road, Shanghai 200240 China
| | - Ping Wang
- Shanghai Key Laboratory for Molecular Engineering of Chiral Drugs, School of Chemistry and Chemical EngineeringShanghai Jiao Tong University 800 Dongchuan Road, Shanghai 200240 China
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6
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Saleh AM, Wilding KM, Calve S, Bundy BC, Kinzer-Ursem TL. Non-canonical amino acid labeling in proteomics and biotechnology. J Biol Eng 2019; 13:43. [PMID: 31139251 PMCID: PMC6529998 DOI: 10.1186/s13036-019-0166-3] [Citation(s) in RCA: 42] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2018] [Accepted: 04/11/2019] [Indexed: 02/03/2023] Open
Abstract
Metabolic labeling of proteins with non-canonical amino acids (ncAAs) provides unique bioorthogonal chemical groups during de novo synthesis by taking advantage of both endogenous and heterologous protein synthesis machineries. Labeled proteins can then be selectively conjugated to fluorophores, affinity reagents, peptides, polymers, nanoparticles or surfaces for a wide variety of downstream applications in proteomics and biotechnology. In this review, we focus on techniques in which proteins are residue- and site-specifically labeled with ncAAs containing bioorthogonal handles. These ncAA-labeled proteins are: readily enriched from cells and tissues for identification via mass spectrometry-based proteomic analysis; selectively purified for downstream biotechnology applications; or labeled with fluorophores for in situ analysis. To facilitate the wider use of these techniques, we provide decision trees to help guide the design of future experiments. It is expected that the use of ncAA labeling will continue to expand into new application areas where spatial and temporal analysis of proteome dynamics and engineering new chemistries and new function into proteins are desired.
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Affiliation(s)
- Aya M. Saleh
- Weldon School of Biomedical Engineering, Purdue University, West Lafayette, IN USA
| | - Kristen M. Wilding
- Department of Chemical Engineering, Brigham Young University, Provo, UT USA
| | - Sarah Calve
- Weldon School of Biomedical Engineering, Purdue University, West Lafayette, IN USA
| | - Bradley C. Bundy
- Department of Chemical Engineering, Brigham Young University, Provo, UT USA
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7
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Murale DP, Hong SC, Jang S, Lee J. Reinvestigation of an
O
‐Salicylaldehyde Ester Functional Group in Aqueous Buffer and Discovery of a Coumarin Scaffold Probe for Selective N‐Terminal Cysteine Labeling. Chembiochem 2018; 19:2545-2549. [DOI: 10.1002/cbic.201800565] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2018] [Indexed: 01/25/2023]
Affiliation(s)
- Dhiraj P. Murale
- Molecular Recognition Research CenterKorea Institute of Science and Technology (KIST) 5, Hwarang-ro 14-gil Seongbuk-gu Seoul 02792 South Korea
| | - Seong Cheol Hong
- Molecular Recognition Research CenterKorea Institute of Science and Technology (KIST) 5, Hwarang-ro 14-gil Seongbuk-gu Seoul 02792 South Korea
- Division of Bio-MedKIST-School UST 5, Hwarang-ro 14-gil Seongbuk-gu Seoul 02792 South Korea
| | - Se‐young Jang
- Molecular Recognition Research CenterKorea Institute of Science and Technology (KIST) 5, Hwarang-ro 14-gil Seongbuk-gu Seoul 02792 South Korea
- Division of Bio-MedKIST-School UST 5, Hwarang-ro 14-gil Seongbuk-gu Seoul 02792 South Korea
| | - Jun‐Seok Lee
- Molecular Recognition Research CenterKorea Institute of Science and Technology (KIST) 5, Hwarang-ro 14-gil Seongbuk-gu Seoul 02792 South Korea
- Division of Bio-MedKIST-School UST 5, Hwarang-ro 14-gil Seongbuk-gu Seoul 02792 South Korea
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8
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Abstract
Synthetic proteins are expected to go beyond the boundary of recombinant DNA expression systems by being flexibly installed with site-specific natural or unnatural modification structures during synthesis. To enable protein chemical synthesis, peptide ligations provide effective strategies to assemble short peptide fragments obtained from solid-phase peptide synthesis (SPPS) into long peptides and proteins. In this regard, chemoselective peptide ligation represents a simple but powerful transformation realizing selective amide formation between the C-terminus and N-terminus of two side-chain-unprotected peptide fragments. These reactions are highly chemo- and regioselective to tolerate the side-chain functionalities present on the unprotected peptides, highly reactive to work with millmolar or submillimolar concentrations of the substrates, and operationally simple with mild conditions and accessible building blocks. This Account focuses on our work in the development of serine/threonine ligation (STL), which originates from a chemoselective reaction between an unprotected peptide with a C-terminal salicylaldehyde (SAL) ester and another unprotected peptide with an N-terminal serine or threonine residue. Mechanistically, STL involves imine capture, 5- endo-trig ring-chain tautomerization, O-to- N [1,5] acyl transfer to afford the N, O-benzylidene acetal-linked peptide, and acidolysis to regenerate the Xaa-Ser/Thr linkage (where Xaa is the amino acid) at the ligation site. The high abundance of serine and threonine residues (12.7%) in naturally occurring proteins and the good compatibility of STL with various C-terminal residues provide multiple choices for ligation sites. The requisite peptide C-terminal SAL esters can be prepared from the peptide fragments obtained from both Fmoc-SPPS and Boc-SPPS through four available methods (a safety-catch strategy based on phenolysis, direct coupling, ozonolysis, and the n + 1 strategy). In the synthesis of proteins (e.g., ACYP enzyme, MUC1 glycopeptide 40-mer to 80-mer, interleukin 25, and HMGA1a with variable post-translational modification patterns), both C-to- N and N-to- C sequential STL strategies have been developed through selection of temporal N-terminal protecting groups and proper design of the switch-on/off C-terminal SAL ester surrogate, respectively. In the synthesis of cyclic peptide natural products (e.g., daptomycin, teixobactin, cyclomontanin B, yunnanin C) and their analogues, intramolecular head-to-tail STL has been implemented on linear peptide SAL ester precursors containing four to 10 amino acid residues with good efficiency and minimized oligomerization. As a thiol-independent chemoselective ligation complementary to native chemical ligation, STL provides an alternative tool for the chemical synthesis of homogeneous proteins with site-specific and structure-defined modifications and cyclic peptide natural products, which lays foundation for chemical biology and medicinal studies of those molecules with biological importance and therapeutic potential.
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Affiliation(s)
- Han Liu
- Department of Chemistry, State Key Laboratory of Synthetic Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, P. R. China
| | - Xuechen Li
- Department of Chemistry, State Key Laboratory of Synthetic Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, P. R. China
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9
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Wilding KM, Smith AK, Wilkerson JW, Bush DB, Knotts TA, Bundy BC. The Locational Impact of Site-Specific PEGylation: Streamlined Screening with Cell-Free Protein Expression and Coarse-Grain Simulation. ACS Synth Biol 2018; 7:510-521. [PMID: 29295615 DOI: 10.1021/acssynbio.7b00316] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Although polyethylene glycol (PEG) is commonly used to improve protein stability and therapeutic efficacy, the optimal location for attaching PEG onto proteins is not well understood. Here, we present a cell-free protein synthesis-based screening platform that facilitates site-specific PEGylation and efficient evaluation of PEG attachment efficiency, thermal stability, and activity for different variants of PEGylated T4 lysozyme, including a di-PEGylated variant. We also report developing a computationally efficient coarse-grain simulation model as a potential tool to narrow experimental screening candidates. We use this simulation method as a novel tool to evaluate the locational impact of PEGylation. Using this screen, we also evaluated the predictive impact of PEGylation site solvent accessibility, conjugation site structure, PEG size, and double PEGylation. Our findings indicate that PEGylation efficiency, protein stability, and protein activity varied considerably with PEGylation site, variations that were not well predicted by common PEGylation guidelines. Overall our results suggest current guidelines are insufficiently predictive, highlighting the need for experimental and simulation screening systems such as the one presented here.
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Affiliation(s)
- Kristen M. Wilding
- Department of Chemical Engineering, Brigham Young University, Provo, Utah 84602, United States
| | - Addison K. Smith
- Department of Chemical Engineering, Brigham Young University, Provo, Utah 84602, United States
| | - Joshua W. Wilkerson
- Department of Chemical Engineering, Brigham Young University, Provo, Utah 84602, United States
| | - Derek B. Bush
- Department of Chemical Engineering, Brigham Young University, Provo, Utah 84602, United States
| | - Thomas A. Knotts
- Department of Chemical Engineering, Brigham Young University, Provo, Utah 84602, United States
| | - Bradley C. Bundy
- Department of Chemical Engineering, Brigham Young University, Provo, Utah 84602, United States
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10
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Gunnoo SB, Madder A. Chemical Protein Modification through Cysteine. Chembiochem 2016; 17:529-53. [DOI: 10.1002/cbic.201500667] [Citation(s) in RCA: 242] [Impact Index Per Article: 30.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2015] [Indexed: 12/15/2022]
Affiliation(s)
- Smita B. Gunnoo
- Organic & Biomimetic Chemistry Research Group; Department of Organic and Macromolecular Chemistry; Ghent University; Krijgslaan 281 9000 Gent Belgium
| | - Annemieke Madder
- Organic & Biomimetic Chemistry Research Group; Department of Organic and Macromolecular Chemistry; Ghent University; Krijgslaan 281 9000 Gent Belgium
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11
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Herzberger J, Niederer K, Pohlit H, Seiwert J, Worm M, Wurm FR, Frey H. Polymerization of Ethylene Oxide, Propylene Oxide, and Other Alkylene Oxides: Synthesis, Novel Polymer Architectures, and Bioconjugation. Chem Rev 2015; 116:2170-243. [PMID: 26713458 DOI: 10.1021/acs.chemrev.5b00441] [Citation(s) in RCA: 451] [Impact Index Per Article: 50.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
The review summarizes current trends and developments in the polymerization of alkylene oxides in the last two decades since 1995, with a particular focus on the most important epoxide monomers ethylene oxide (EO), propylene oxide (PO), and butylene oxide (BO). Classical synthetic pathways, i.e., anionic polymerization, coordination polymerization, and cationic polymerization of epoxides (oxiranes), are briefly reviewed. The main focus of the review lies on more recent and in some cases metal-free methods for epoxide polymerization, i.e., the activated monomer strategy, the use of organocatalysts, such as N-heterocyclic carbenes (NHCs) and N-heterocyclic olefins (NHOs) as well as phosphazene bases. In addition, the commercially relevant double-metal cyanide (DMC) catalyst systems are discussed. Besides the synthetic progress, new types of multifunctional linear PEG (mf-PEG) and PPO structures accessible by copolymerization of EO or PO with functional epoxide comonomers are presented as well as complex branched, hyperbranched, and dendrimer like polyethers. Amphiphilic block copolymers based on PEO and PPO (Poloxamers and Pluronics) and advances in the area of PEGylation as the most important bioconjugation strategy are also summarized. With the ever growing toolbox for epoxide polymerization, a "polyether universe" may be envisaged that in its structural diversity parallels the immense variety of structural options available for polymers based on vinyl monomers with a purely carbon-based backbone.
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Affiliation(s)
- Jana Herzberger
- Institute of Organic Chemistry, Johannes Gutenberg-University Mainz , Duesbergweg 10-14, D-55128 Mainz, Germany.,Graduate School Materials Science in Mainz , Staudingerweg 9, D-55128 Mainz, Germany
| | - Kerstin Niederer
- Institute of Organic Chemistry, Johannes Gutenberg-University Mainz , Duesbergweg 10-14, D-55128 Mainz, Germany
| | - Hannah Pohlit
- Institute of Organic Chemistry, Johannes Gutenberg-University Mainz , Duesbergweg 10-14, D-55128 Mainz, Germany.,Graduate School Materials Science in Mainz , Staudingerweg 9, D-55128 Mainz, Germany.,Max Planck Graduate Center , Staudingerweg 6, D-55128 Mainz, Germany.,Department of Dermatology, University Medical Center , Langenbeckstraße 1, D-55131 Mainz, Germany
| | - Jan Seiwert
- Institute of Organic Chemistry, Johannes Gutenberg-University Mainz , Duesbergweg 10-14, D-55128 Mainz, Germany
| | - Matthias Worm
- Institute of Organic Chemistry, Johannes Gutenberg-University Mainz , Duesbergweg 10-14, D-55128 Mainz, Germany.,Max Planck Graduate Center , Staudingerweg 6, D-55128 Mainz, Germany
| | - Frederik R Wurm
- Max Planck Graduate Center , Staudingerweg 6, D-55128 Mainz, Germany.,Max Planck Institute for Polymer Research , Ackermannweg 10, D-55128 Mainz, Germany
| | - Holger Frey
- Institute of Organic Chemistry, Johannes Gutenberg-University Mainz , Duesbergweg 10-14, D-55128 Mainz, Germany.,Graduate School Materials Science in Mainz , Staudingerweg 9, D-55128 Mainz, Germany
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12
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Dozier JK, Distefano MD. Site-Specific PEGylation of Therapeutic Proteins. Int J Mol Sci 2015; 16:25831-64. [PMID: 26516849 PMCID: PMC4632829 DOI: 10.3390/ijms161025831] [Citation(s) in RCA: 187] [Impact Index Per Article: 20.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2015] [Revised: 10/19/2015] [Accepted: 10/20/2015] [Indexed: 12/11/2022] Open
Abstract
The use of proteins as therapeutics has a long history and is becoming ever more common in modern medicine. While the number of protein-based drugs is growing every year, significant problems still remain with their use. Among these problems are rapid degradation and excretion from patients, thus requiring frequent dosing, which in turn increases the chances for an immunological response as well as increasing the cost of therapy. One of the main strategies to alleviate these problems is to link a polyethylene glycol (PEG) group to the protein of interest. This process, called PEGylation, has grown dramatically in recent years resulting in several approved drugs. Installing a single PEG chain at a defined site in a protein is challenging. Recently, there is has been considerable research into various methods for the site-specific PEGylation of proteins. This review seeks to summarize that work and provide background and context for how site-specific PEGylation is performed. After introducing the topic of site-specific PEGylation, recent developments using chemical methods are described. That is followed by a more extensive discussion of bioorthogonal reactions and enzymatic labeling.
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Affiliation(s)
- Jonathan K Dozier
- Department of Chemistry, University of Minnesota, Minneapolis, MN 55455, USA.
| | - Mark D Distefano
- Department of Chemistry, University of Minnesota, Minneapolis, MN 55455, USA.
- Department of Medicinal Chemistry, University of Minnesota, Minneapolis, MN 55455, USA.
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13
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Zang Q, Tada S, Uzawa T, Kiga D, Yamamura M, Ito Y. Two site genetic incorporation of varying length polyethylene glycol into the backbone of one peptide. Chem Commun (Camb) 2015; 51:14385-8. [PMID: 26273708 DOI: 10.1039/c5cc04486c] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Polyethylene glycol (PEG) of different lengths was genetically incorporated into the backbone of a polypeptide using stop-anticodon and frameshift anticodon-containing tRNAs, which were acylated with PEG-containing amino acids.
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Affiliation(s)
- Qingmin Zang
- Nano Medical Engineering Laboratory, RIKEN, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan.
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14
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Chow HY, Li X. Development of thiol-independent peptide ligations for protein chemical synthesis. Tetrahedron Lett 2015. [DOI: 10.1016/j.tetlet.2015.04.086] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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15
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Tung CL, Wong CTT, Li X. Peptide 2-formylthiophenol esters do not proceed through a Ser/Thr ligation pathway, but participate in a peptide aminolysis to enable peptide condensation and cyclization. Org Biomol Chem 2015; 13:6922-6. [DOI: 10.1039/c5ob00825e] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Peptide thiol salicylaldehyde esters unexpectedly do not follow a Ser/Thr ligation pathway, but proceed towards a peptide aminolysis in DMSO.
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Affiliation(s)
- Chun Ling Tung
- Department of Chemistry
- State Key Laboratory of Synthetic Chemistry
- The University of Hong Kong
- China
- Chong Yuet Ming Chemistry Building
| | - Clarence T. T. Wong
- Department of Chemistry
- State Key Laboratory of Synthetic Chemistry
- The University of Hong Kong
- China
- Chong Yuet Ming Chemistry Building
| | - Xuechen Li
- Department of Chemistry
- State Key Laboratory of Synthetic Chemistry
- The University of Hong Kong
- China
- Chong Yuet Ming Chemistry Building
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16
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Lee CL, Lam HY, Li X. Serine/threonine ligation for natural cyclic peptide syntheses. Nat Prod Rep 2015; 32:1274-9. [DOI: 10.1039/c5np00001g] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
The effectiveness of Ser/Thr ligation-mediated peptide cyclization has been demonstrated by the synthesis of cyclic peptide natural products, such as daptomycin, cyclomontanin B, yunnanin C and mahafacyclin B.
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Affiliation(s)
- Chi Lung Lee
- Department of Chemistry
- The University of Hong Kong
- Hong Kong SAR
- China
- Shenzhen Institute of Research and Innovation of The University of Hong Kong
| | - Hiu Yung Lam
- Department of Chemistry
- The University of Hong Kong
- Hong Kong SAR
- China
- Shenzhen Institute of Research and Innovation of The University of Hong Kong
| | - Xuechen Li
- Department of Chemistry
- The University of Hong Kong
- Hong Kong SAR
- China
- State Key Laboratory of Synthetic Chemistry
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17
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Lee CL, Li X. Serine/threonine ligation for the chemical synthesis of proteins. Curr Opin Chem Biol 2014; 22:108-14. [DOI: 10.1016/j.cbpa.2014.09.023] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2014] [Revised: 09/19/2014] [Accepted: 09/19/2014] [Indexed: 11/26/2022]
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18
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Lin EW, Boehnke N, Maynard HD. Protein-polymer conjugation via ligand affinity and photoactivation of glutathione S-transferase. Bioconjug Chem 2014; 25:1902-9. [PMID: 25315970 PMCID: PMC4205000 DOI: 10.1021/bc500380r] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
![]()
A photoactivated,
site-selective conjugation of poly(ethylene glycol)
(PEG) to the glutathione (GSH) binding pocket of glutathione S-transferase (GST) is described. To achieve this, a GSH
analogue (GSH-BP) was designed and chemically synthesized with three
functionalities: (1) the binding affinity of GSH to GST, (2) a free
thiol for polymer functionalization, and (3) a photoreactive benzophenone
(BP) component. Different molecular weights (2 kDa, 5 kDa, and 20
kDa) of GSH-BP modified PEGs (GSBP-PEGs) were synthesized and showed
conjugation efficiencies between 52% and 76% to GST. Diazirine (DA)
PEG were also prepared but gave conjugation yields lower than for
GSBP-PEGs. PEGs with different end-groups were also synthesized to
validate the importance of each component in the end-group design.
End-groups included glutathione (GS-PEG) and benzophenone (BP-PEG).
Results showed that both GSH and BP were crucial for successful conjugation
to GST. In addition, conjugations of 5 kDa GSBP-PEG to different proteins
were investigated, including bovine serum albumin (BSA), lysozyme
(Lyz), ubiquitin (Ubq), and GST-fused ubiquitin (GST-Ubq) to ensure
specific binding to GST. By combining noncovalent and covalent interactions,
we have developed a new phototriggered protein–polymer conjugation
method that is generally applicable to GST-fusion proteins.
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Affiliation(s)
- En-Wei Lin
- Department of Chemistry & Biochemistry and the California NanoSystems Institute, University of California, Los Angeles , 607 Charles E. Young Drive East, Los Angeles, California 90095, United States
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McKay CS, Finn MG. Click chemistry in complex mixtures: bioorthogonal bioconjugation. CHEMISTRY & BIOLOGY 2014; 21:1075-101. [PMID: 25237856 PMCID: PMC4331201 DOI: 10.1016/j.chembiol.2014.09.002] [Citation(s) in RCA: 551] [Impact Index Per Article: 55.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2014] [Revised: 09/01/2014] [Accepted: 09/02/2014] [Indexed: 01/18/2023]
Abstract
The selective chemical modification of biological molecules drives a good portion of modern drug development and fundamental biological research. While a few early examples of reactions that engage amine and thiol groups on proteins helped establish the value of such processes, the development of reactions that avoid most biological molecules so as to achieve selectivity in desired bond-forming events has revolutionized the field. We provide an update on recent developments in bioorthogonal chemistry that highlights key advances in reaction rates, biocompatibility, and applications. While not exhaustive, we hope this summary allows the reader to appreciate the rich continuing development of good chemistry that operates in the biological setting.
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Affiliation(s)
- Craig S McKay
- School of Chemistry & Biochemistry, Georgia Institute of Technology, Atlanta, GA 30332, USA
| | - M G Finn
- School of Chemistry & Biochemistry, Georgia Institute of Technology, Atlanta, GA 30332, USA.
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