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Taylor JT, Tozer DJ, Curchod BFE. On the description of conical intersections between excited electronic states with LR-TDDFT and ADC(2). J Chem Phys 2023; 159:214115. [PMID: 38059547 DOI: 10.1063/5.0176140] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2023] [Accepted: 11/14/2023] [Indexed: 12/08/2023] Open
Abstract
Conical intersections constitute the conceptual bedrock of our working understanding of ultrafast, nonadiabatic processes within photochemistry (and photophysics). Accurate calculation of potential energy surfaces within the vicinity of conical intersections, however, still poses a serious challenge to many popular electronic structure methods. Multiple works have reported on the deficiency of methods like linear-response time-dependent density functional theory within the adiabatic approximation (AA LR-TDDFT) or algebraic diagrammatic construction to second-order [ADC(2)]-approaches often used in excited-state molecular dynamics simulations-to describe conical intersections between the ground and excited electronic states. In the present study, we focus our attention on conical intersections between excited electronic states and probe the ability of AA LR-TDDFT and ADC(2) to describe their topology and topography, using protonated formaldimine and pyrazine as two exemplar molecules. We also take the opportunity to revisit the performance of these methods in describing conical intersections involving the ground electronic state in protonated formaldimine-highlighting in particular how the intersection ring exhibited by AA LR-TDDFT can be perceived either as a (near-to-linear) seam of intersection or two interpenetrating cones, depending on the magnitude of molecular distortions within the branching space.
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Affiliation(s)
- Jack T Taylor
- Department of Chemistry, Durham University, South Road, Durham DH1 3LE, United Kingdom
| | - David J Tozer
- Department of Chemistry, Durham University, South Road, Durham DH1 3LE, United Kingdom
| | - Basile F E Curchod
- Centre for Computational Chemistry, School of Chemistry, University of Bristol, Cantock's Close, Bristol BS8 1TS, United Kingdom
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2
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Yuan W, Yang D, Feng B, Min Y, Chen Z, Yu S, Wu G, Yang X. Ultrafast decay dynamics of electronically excited 2-ethylpyrrole. Phys Chem Chem Phys 2021; 23:17625-17633. [PMID: 34369952 DOI: 10.1039/d1cp01090e] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
The excited-state decay dynamics of 2-ethylpyrrole following UV excitation in the wavelength range of 254.8-218.0 nm is investigated in detail using the femtosecond time-resolved photoelectron imaging method. The time-resolved photoelectron spectra and photoelectron angular distributions at all pump wavelengths are carefully analysed and the following picture is derived: at the longest pump wavelengths (254.8, 248.3 and 246.1 nm), 2-ethylpyrrole is excited to the S1(1πσ*) state having a lifetime of about 50 fs. At 248.3, 246.1 and 237.4 nm, another excited state of Rydberg character is excited. The lifetime of this state is ∼570 fs at 237.4 nm and becomes slightly longer at other two pump wavelengths. At the shortest pump wavelengths (230.8 and 218.0 nm), 2-ethylpyrrole is excited to a state which is tentatively assigned to the 11ππ* state, having a lifetime of 75 ± 15 and 48 ± 10 fs for the longer and shorter pump wavelengths, respectively. Internal conversion to the S1(1πσ*) state might be one of the decay mechanisms of the 11ππ* state.
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Affiliation(s)
- Wenpeng Yuan
- Hangzhou Institute of Advanced Studies, Zhejiang Normal University, 1108 Gengwen Road, Hangzhou, Zhejiang 311231, China.
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3
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Marsili E, Prlj A, Curchod BFE. Caveat when using ADC(2) for studying the photochemistry of carbonyl-containing molecules. Phys Chem Chem Phys 2021; 23:12945-12949. [PMID: 34085679 PMCID: PMC8207513 DOI: 10.1039/d1cp02185k] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2021] [Accepted: 05/28/2021] [Indexed: 12/21/2022]
Abstract
Several electronic-structure methods are available to study the photochemistry and photophysics of organic molecules. Among them, ADC(2) stands as a sweet spot between computational efficiency and accuracy. As a result, ADC(2) has recently seen its number of applications booming, in particular to unravel the deactivation pathways and photodynamics of organic molecules. Despite this growing success, we demonstrate here that care has to be taken when studying the nonradiative pathways of carbonyl-containing molecules, as ADC(2) appears to suffer from a systematic flaw.
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Affiliation(s)
| | - Antonio Prlj
- Department of Chemistry, Durham University, Durham DH1 3LE, UK.
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4
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5
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Milovanović B, Novak J, Etinski M, Domcke W, Došlić N. Simulation of UV absorption spectra and relaxation dynamics of uracil and uracil-water clusters. Phys Chem Chem Phys 2021; 23:2594-2604. [PMID: 33475644 DOI: 10.1039/d0cp05618a] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Despite many studies, the mechanisms of nonradiative relaxation of uracil in the gas phase and in aqueous solution are still not fully resolved. Here we combine theoretical UV absorption spectroscopy with nonadiabatic dynamics simulations to identify the photophysical mechanisms that can give rise to experimentally observed decay time constants. We first compute and theoretically assign the electronic spectra of uracil using the second-order algebraic-diagrammatic-construction (ADC(2)) method. The obtained electronic states, their energy differences and state-specific solvation effects are the prerequisites for understanding the photodynamics. We then use nonadiabatic trajectory-surface-hopping dynamics simulations to investigate the photoinduced dynamics of uracil and uracil-water clusters. In contrast to previous studies, we found that a single mechanism - the ethylenic twist around the C[double bond, length as m-dash]C bond - is responsible for the ultrafast component of the nonradiative decay, both in the gas phase and in solution. Very good agreement with the experimentally determined ultrashort decay time constants is obtained.
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Affiliation(s)
| | - Jurica Novak
- Department of Physical Chemistry, Ruđer Bošković Institute, Zagreb, Croatia. and Higher Medical and Biological School, South Ural State University, Chelyabinsk, Russia
| | - Mihajlo Etinski
- University of Belgrade, Faculty of Physical Chemistry, Belgrade, Serbia
| | - Wolfgang Domcke
- Department of Chemistry, Technical University of Munich, Garching, Germany
| | - Nađa Došlić
- Department of Physical Chemistry, Ruđer Bošković Institute, Zagreb, Croatia.
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6
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Paterson MJ, Townsend D. Rydberg-to-valence evolution in excited state molecular dynamics. INT REV PHYS CHEM 2020. [DOI: 10.1080/0144235x.2020.1815389] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Affiliation(s)
| | - Dave Townsend
- Institute of Chemical Sciences, Heriot-Watt University, Edinburgh, UK
- Institute of Photonics & Quantum Sciences, Heriot-Watt University, Edinburgh, UK
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7
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Photoionization of pyrrole from the $$B_2$$ state: a computational study on the effects of Rydberg–valence mixing. Theor Chem Acc 2020. [DOI: 10.1007/s00214-020-02649-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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8
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Geng T, Ehrmaier J, Schalk O, Richings GW, Hansson T, Worth G, Thomas RD. Time-Resolved Photoelectron Spectroscopy Studies of Isoxazole and Oxazole. J Phys Chem A 2020; 124:3984-3992. [PMID: 32242664 PMCID: PMC7304896 DOI: 10.1021/acs.jpca.9b11788] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
![]()
The
excited state relaxation pathways of isoxazole and oxazole
upon excitation with UV-light were investigated by nonadiabatic ab
initio dynamics simulations and time-resolved photoelectron spectroscopy.
Excitation of the bright ππ*-state of isoxazole predominantly
leads to ring-opening dynamics. Both the initially excited ππ*-state
and the dissociative πσ*-state offer a combined barrier-free
reaction pathway, such that ring-opening, defined as a distance of
more than 2 Å between two neighboring atoms, occurs within 45
fs. For oxazole, in contrast, the excited state dynamics is about
twice as slow (85 fs) and the quantum yield for ring-opening is lower.
This is caused by a small barrier between the ππ*-state
and the πσ*-state along the reaction path, which suppresses
direct ring-opening. Theoretical findings are consistent with the
measured time-resolved photoelectron spectra, confirming the timescales
and the quantum yields for the ring-opening channel. The results indicate
that a combination of time-resolved photoelectron spectroscopy and
excited state dynamics simulations can explain the dominant reaction
pathways for this class of molecules. As a general rule, we suggest
that the antibonding σ*-orbital located between the oxygen atom
and a neighboring atom of a five-membered heterocyclic system provides
a driving force for ring-opening reactions, which is modified by the
presence and position of additional nitrogen atoms.
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Affiliation(s)
- Ting Geng
- Department of Physics, AlbaNova University Centre, Stockholm University, Roslagstullsbacken 21, 106 91 Stockholm, Sweden
| | - Johannes Ehrmaier
- Department of Chemistry, Technical University of Munich, Lichtenbergstr. 4, 85748 Garching, Germany
| | - Oliver Schalk
- Department of Physics, AlbaNova University Centre, Stockholm University, Roslagstullsbacken 21, 106 91 Stockholm, Sweden.,Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen, Denmark
| | - Gareth W Richings
- Department of Chemistry and Centre for Scientific Computing, University of Warwick, CV4 7AL Coventry, U.K
| | - Tony Hansson
- Department of Physics, AlbaNova University Centre, Stockholm University, Roslagstullsbacken 21, 106 91 Stockholm, Sweden
| | - Graham Worth
- Department of Chemistry, University College London, 20 Gordon Street, WC1H 0AJ London, U.K
| | - Richard D Thomas
- Department of Physics, AlbaNova University Centre, Stockholm University, Roslagstullsbacken 21, 106 91 Stockholm, Sweden
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9
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Anand N, Isukapalli SVK, Vennapusa SR. Excited-state intramolecular proton transfer driven by conical intersection in hydroxychromones. J Comput Chem 2020; 41:1068-1080. [PMID: 31965589 DOI: 10.1002/jcc.26152] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2019] [Revised: 12/26/2019] [Accepted: 01/07/2020] [Indexed: 11/11/2022]
Abstract
Nonradiative decay pathways associated with vibronically coupled S1 (ππ*)-S2 (nπ*) potential energy surfaces of 3- and 5-hydroxychromones are investigated by employing the linear vibronic coupling approach. The presence of a conical intersection close to the Franck-Condon point is identified based on the critical examination of computed energetics and structural parameters of stationary points. We show that very minimal displacements of relevant atoms of intramolecular proton transfer geometry are adequate to drive the molecule toward the conical intersection nuclear configuration. The evolving wavepacket on S1 (ππ*) bifurcates at the conical intersection: a part of the wavepacket moves to S2 (nπ*) within a few femtoseconds while the other decays to S1 minimum. Our findings indicate the possibility of forming the proton transfer tautomer product via S2 (nπ*), competing with the traditional pathway occurring on S1 (ππ*).
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Affiliation(s)
- Neethu Anand
- Indian Institute of Science Education and Research Thiruvananthapuram, Thiruvananthapuram, Kerela, India
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10
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Park JW, Al-Saadon R, MacLeod MK, Shiozaki T, Vlaisavljevich B. Multireference Electron Correlation Methods: Journeys along Potential Energy Surfaces. Chem Rev 2020; 120:5878-5909. [PMID: 32239929 DOI: 10.1021/acs.chemrev.9b00496] [Citation(s) in RCA: 79] [Impact Index Per Article: 15.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Multireference electron correlation methods describe static and dynamical electron correlation in a balanced way and, therefore, can yield accurate and predictive results even when single-reference methods or multiconfigurational self-consistent field theory fails. One of their most prominent applications in quantum chemistry is the exploration of potential energy surfaces. This includes the optimization of molecular geometries, such as equilibrium geometries and conical intersections and on-the-fly photodynamics simulations, both of which depend heavily on the ability of the method to properly explore the potential energy surface. Because such applications require nuclear gradients and derivative couplings, the availability of analytical nuclear gradients greatly enhances the scope of quantum chemical methods. This review focuses on the developments and advances made in the past two decades. A detailed account of the analytical nuclear gradient and derivative coupling theories is presented. Emphasis is given to the software infrastructure that allows one to make use of these methods. Notable applications of multireference electron correlation methods to chemistry, including geometry optimizations and on-the-fly dynamics, are summarized at the end followed by a discussion of future prospects.
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Affiliation(s)
- Jae Woo Park
- Department of Chemistry, Chungbuk National University, Chungdae-ro 1, Cheongju 28644, Korea
| | - Rachael Al-Saadon
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Matthew K MacLeod
- Workday, 4900 Pearl Circle East, Suite 100, Boulder, Colorado 80301, United States
| | - Toru Shiozaki
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States.,Quantum Simulation Technologies, Inc., 625 Massachusetts Avenue, Cambridge, Massachusetts 02139, United States
| | - Bess Vlaisavljevich
- Department of Chemistry, University of South Dakota, 414 East Clark Street, Vermillion, South Dakota 57069, United States
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11
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Lamas I, Longarte A, Peralta Conde A, Muga G, Townsend D, Montero R. Dynamics of Pyrroles Excited to the 3s/πσ* State. J Phys Chem A 2019; 123:8982-8993. [DOI: 10.1021/acs.jpca.9b06045] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Iker Lamas
- Departamento de Química Física, Universidad del País Vasco (UPV/EHU), Apart. 644, 48080 Bilbao, Spain
| | - Asier Longarte
- Departamento de Química Física, Universidad del País Vasco (UPV/EHU), Apart. 644, 48080 Bilbao, Spain
| | - Alvaro Peralta Conde
- Departamento de Química Física, Universidad del País Vasco (UPV/EHU), Apart. 644, 48080 Bilbao, Spain
| | - Gonzalo Muga
- Departamento de Química Física, Universidad del País Vasco (UPV/EHU), Apart. 644, 48080 Bilbao, Spain
| | - Dave Townsend
- Institute of Photonics and Quantum Sciences, Heriot-Watt University, Edinburgh EH14 4AS, United Kingdom
- Institute of Chemical Sciences, Heriot-Watt University, Edinburgh EH14 4AS, United Kingdom
| | - Raul Montero
- SGIKER Laser Facility, Universidad del País Vasco (UPV/EHU), 48940 Leioa, Spain
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12
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13
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Sapunar M, Piteša T, Davidović D, Došlić N. Highly Efficient Algorithms for CIS Type Excited State Wave Function Overlaps. J Chem Theory Comput 2019; 15:3461-3469. [DOI: 10.1021/acs.jctc.9b00235] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Marin Sapunar
- Centre for Informatics and Computing, Rudjer Bošković Institute, Zagreb 10000, Croatia
| | - Tomislav Piteša
- Centre for Informatics and Computing, Rudjer Bošković Institute, Zagreb 10000, Croatia
| | - Davor Davidović
- Centre for Informatics and Computing, Rudjer Bošković Institute, Zagreb 10000, Croatia
| | - Nadja Došlić
- Centre for Informatics and Computing, Rudjer Bošković Institute, Zagreb 10000, Croatia
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14
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Baskov R, White AJ, Mozyrsky D. Improved Ehrenfest Approach to Model Correlated Electron-Nuclear Dynamics. J Phys Chem Lett 2019; 10:433-440. [PMID: 30621396 DOI: 10.1021/acs.jpclett.8b03061] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Mixed quantum-classical mechanical descriptions are critical to modeling coupled electron-nuclear dynamics, i.e., nonadiabatic molecular dynamics, relevant to photochemical and photophysical processes. We introduce an efficient description of such dynamics in terms of an effective Hamiltonian that not only properly captures electron-nuclear correlation effects but also helps develop an efficient computational method. In particular, we introduce a coupled Gaussian wavepacket parametrization of the nuclear wave function, which generalizes the Ehrenfest approach to account for electron-nuclei correlations. We test this new approach, Ehrenfest-Plus, on a suite of model problems that probe electron-nuclear correlation in nonadiabatic transitions. The high accuracy of our approach, combined with mixed quantum-classical efficiency, opens a path for improved simulation of nonadiabatic molecular dynamics in realistic molecular systems.
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Affiliation(s)
- Roman Baskov
- Institute of Physics of the National Academy of Sciences of Ukraine , Pr. Nauky 46 , Kyiv-28 MSP 03028 , Ukraine
| | - Alexander J White
- Theoretical Division , Los Alamos National Laboratory , Los Alamos , New Mexico 87545 , United States
| | - Dmitry Mozyrsky
- Theoretical Division , Los Alamos National Laboratory , Los Alamos , New Mexico 87545 , United States
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15
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Parker SM, Roy S, Furche F. Multistate hybrid time-dependent density functional theory with surface hopping accurately captures ultrafast thymine photodeactivation. Phys Chem Chem Phys 2019; 21:18999-19010. [DOI: 10.1039/c9cp03127h] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We report an efficient analytical implementation of first-order nonadiabatic derivative couplings between arbitrary Born–Oppenheimer states in the hybrid time-dependent density functional theory (TDDFT) framework using atom-centered basis functions.
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Affiliation(s)
- Shane M. Parker
- Department of Chemistry
- University of California, Irvine
- Irvine
- USA
| | - Saswata Roy
- Department of Chemistry
- University of California, Irvine
- Irvine
- USA
| | - Filipp Furche
- Department of Chemistry
- University of California, Irvine
- Irvine
- USA
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16
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Green JA, Makhov DV, Cole-Filipiak NC, Symonds C, Stavros VG, Shalashilin DV. Ultrafast photodissociation dynamics of 2-ethylpyrrole: adding insight to experiment with ab initio multiple cloning. Phys Chem Chem Phys 2019; 21:3832-3841. [DOI: 10.1039/c8cp06359a] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Fully quantum nonadiabatic dynamics calculation of 2-ethylpyrrole photodissociation shows the experimentally obtained ultrafast time-constant has two components.
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Affiliation(s)
| | - Dmitry V. Makhov
- School of Chemistry
- University of Leeds
- Leeds
- UK
- School of Mathematics
| | - Neil C. Cole-Filipiak
- Department of Chemistry
- University of Warwick
- Coventry CV4 7AL
- UK
- Combustion Research Facility
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17
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Cooper GA, Hansen CS, Karsili TNV, Ashfold MNR. Photofragment Translational Spectroscopy Studies of H Atom Loss Following Ultraviolet Photoexcitation of Methimazole in the Gas Phase. J Phys Chem A 2018; 122:9869-9878. [DOI: 10.1021/acs.jpca.8b09859] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Graham A. Cooper
- School of Chemistry, University of Bristol, Bristol BS8 1TS, United Kingdom
| | - Christopher S. Hansen
- School of Chemistry, University of New South Wales, Sydney, New South Wales 2052, Australia
| | - Tolga N. V. Karsili
- Department of Chemistry, University of Louisiana at Lafayette, Lafayette, Louisiana 70504, United States
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18
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19
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Ai Y, Xing J, Zhang A, Zhao C, Liu Y, Xie B, Chen W, Cui G, Lu Z, Wang X. Computational Study on the Excited-State Decay of 5-Methylcytosine and 5-Hydroxymethylcytosine: The Common Form of DNA Methylation and Its Oxidation Product. J Phys Chem B 2018; 122:10424-10434. [DOI: 10.1021/acs.jpcb.8b07830] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
| | | | | | | | | | - Binbin Xie
- Hangzhou Institute of Advanced Studies, Zhejiang Normal University, 1108 Gengwen Road, Hangzhou 311231, Zhejiang, P. R. China
| | | | - Ganglong Cui
- Key Laboratory of Theoretical and Computational Photochemistry, Ministry of Education, College of Chemistry, Beijing Normal University, Beijing 100875, P. R. China
| | | | - Xiangke Wang
- NAAM Research Group, Faculty of Science, King Abdulaziz University, Jeddah 21589, Saudi Arabia
- Collaborative Innovation Centre of Radiation Medicine of Jiangsu Higher Education Institutions, School for Radiological and Interdisciplinary Sciences, Soochow University, Suzhou 215123, P. R. China
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20
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Crespo-Otero R, Barbatti M. Recent Advances and Perspectives on Nonadiabatic Mixed Quantum–Classical Dynamics. Chem Rev 2018; 118:7026-7068. [DOI: 10.1021/acs.chemrev.7b00577] [Citation(s) in RCA: 301] [Impact Index Per Article: 43.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Rachel Crespo-Otero
- School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, United Kingdom
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21
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Xing J, Ai Y, Liu Y, Du J, Chen W, Lu Z, Wang X. Theoretical Studies on the Photophysics and Photochemistry of 5-Formylcytosine and 5-Carboxylcytosine: The Oxidative Products of Epigenetic Modification of Cytosine in DNA. J Phys Chem B 2018; 122:2704-2714. [DOI: 10.1021/acs.jpcb.7b10218] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Jinlu Xing
- College of Environmental Science and Engineering, North China Electric Power University, Beijing 102206, P. R. China
- School of Mathematics and Physical Science, North China Electric Power University, Beijing 102206, P. R. China
| | - Yuejie Ai
- College of Environmental Science and Engineering, North China Electric Power University, Beijing 102206, P. R. China
| | - Yang Liu
- College of Environmental Science and Engineering, North China Electric Power University, Beijing 102206, P. R. China
| | - Jia Du
- School of Mathematics and Physical Science, North China Electric Power University, Beijing 102206, P. R. China
| | - Weiqiang Chen
- College of Environmental Science and Engineering, North China Electric Power University, Beijing 102206, P. R. China
- School of Mathematics and Physical Science, North China Electric Power University, Beijing 102206, P. R. China
| | - Zhanhui Lu
- School of Mathematics and Physical Science, North China Electric Power University, Beijing 102206, P. R. China
| | - Xiangke Wang
- College of Environmental Science and Engineering, North China Electric Power University, Beijing 102206, P. R. China
- NAAM Research Group, Faculty of Science, King Abdulaziz University, Jeddah 21589, Saudi Arabia
- Collaborative Innovation Centre of Radiation Medicine of Jiangsu Higher Education Institutions, School for Radiological and Interdisciplinary Sciences, Soochow University, Suzhou 215123, P. R. China
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22
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Squibb RJ, Sapunar M, Ponzi A, Richter R, Kivimäki A, Plekan O, Finetti P, Sisourat N, Zhaunerchyk V, Marchenko T, Journel L, Guillemin R, Cucini R, Coreno M, Grazioli C, Di Fraia M, Callegari C, Prince KC, Decleva P, Simon M, Eland JHD, Došlić N, Feifel R, Piancastelli MN. Acetylacetone photodynamics at a seeded free-electron laser. Nat Commun 2018; 9:63. [PMID: 29302026 PMCID: PMC5754354 DOI: 10.1038/s41467-017-02478-0] [Citation(s) in RCA: 44] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2017] [Accepted: 12/04/2017] [Indexed: 11/30/2022] Open
Abstract
The first steps in photochemical processes, such as photosynthesis or animal vision, involve changes in electronic and geometric structure on extremely short time scales. Time-resolved photoelectron spectroscopy is a natural way to measure such changes, but has been hindered hitherto by limitations of available pulsed light sources in the vacuum-ultraviolet and soft X-ray spectral region, which have insufficient resolution in time and energy simultaneously. The unique combination of intensity, energy resolution, and femtosecond pulse duration of the FERMI-seeded free-electron laser can now provide exceptionally detailed information on photoexcitation–deexcitation and fragmentation in pump-probe experiments on the 50-femtosecond time scale. For the prototypical system acetylacetone we report here electron spectra measured as a function of time delay with enough spectral and time resolution to follow several photoexcited species through well-characterized individual steps, interpreted using state-of-the-art static and dynamics calculations. These results open the way for investigations of photochemical processes in unprecedented detail. The first steps in photochemical processes involve changes in electronic and geometric structure on extremely short timescales. Here, the authors report femtosecond dynamics in prototypical acetylacetone, by pump-probe photoexcitation-photoemission experiments and static and dynamics calculations.
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Affiliation(s)
- R J Squibb
- Department of Physics, University of Gothenburg, Origovägen 6B, SE-412 96, Gothenburg, Sweden
| | - M Sapunar
- Institut Ruđer Bošković, Bijenička cesta 54, 10000, Zagreb, Croatia
| | - A Ponzi
- Institut Ruđer Bošković, Bijenička cesta 54, 10000, Zagreb, Croatia
| | - R Richter
- Elettra-Sincrotrone Trieste, Strada Statale 14-km 163.5, 34149, Basovizza, Trieste, Italy
| | - A Kivimäki
- Consiglio Nazionale delle Ricerche-Istituto Officina dei Materiali, 34149, Trieste, Italy
| | - O Plekan
- Elettra-Sincrotrone Trieste, Strada Statale 14-km 163.5, 34149, Basovizza, Trieste, Italy
| | - P Finetti
- Elettra-Sincrotrone Trieste, Strada Statale 14-km 163.5, 34149, Basovizza, Trieste, Italy
| | - N Sisourat
- Sorbonne Universités, UPMC Univ Paris 06, CNRS, UMR 7614, Laboratoire de Chimie Physique-Matière et Rayonnement, 75005, Paris Cedex 05, France
| | - V Zhaunerchyk
- Department of Physics, University of Gothenburg, Origovägen 6B, SE-412 96, Gothenburg, Sweden
| | - T Marchenko
- Sorbonne Universités, UPMC Univ Paris 06, CNRS, UMR 7614, Laboratoire de Chimie Physique-Matière et Rayonnement, 75005, Paris Cedex 05, France
| | - L Journel
- Sorbonne Universités, UPMC Univ Paris 06, CNRS, UMR 7614, Laboratoire de Chimie Physique-Matière et Rayonnement, 75005, Paris Cedex 05, France
| | - R Guillemin
- Sorbonne Universités, UPMC Univ Paris 06, CNRS, UMR 7614, Laboratoire de Chimie Physique-Matière et Rayonnement, 75005, Paris Cedex 05, France
| | - R Cucini
- Elettra-Sincrotrone Trieste, Strada Statale 14-km 163.5, 34149, Basovizza, Trieste, Italy
| | - M Coreno
- Elettra-Sincrotrone Trieste, Strada Statale 14-km 163.5, 34149, Basovizza, Trieste, Italy.,Consiglio Nazionale delle Ricerche - Istituto di Struttura della Materia, LD2 unit, 34149, Trieste, Italy
| | - C Grazioli
- Elettra-Sincrotrone Trieste, Strada Statale 14-km 163.5, 34149, Basovizza, Trieste, Italy.,Consiglio Nazionale delle Ricerche - Istituto di Struttura della Materia, LD2 unit, 34149, Trieste, Italy
| | - M Di Fraia
- Elettra-Sincrotrone Trieste, Strada Statale 14-km 163.5, 34149, Basovizza, Trieste, Italy.,Consiglio Nazionale delle Ricerche - Istituto di Struttura della Materia, LD2 unit, 34149, Trieste, Italy
| | - C Callegari
- Elettra-Sincrotrone Trieste, Strada Statale 14-km 163.5, 34149, Basovizza, Trieste, Italy.,Consiglio Nazionale delle Ricerche - Istituto di Struttura della Materia, LD2 unit, 34149, Trieste, Italy
| | - K C Prince
- Elettra-Sincrotrone Trieste, Strada Statale 14-km 163.5, 34149, Basovizza, Trieste, Italy.,Molecular Model Discovery Laboratory, Department of Chemistry and Biotechnology, Swinburne University of Technology, Melbourne, VIC, 3122, Australia
| | - P Decleva
- Consiglio Nazionale delle Ricerche-Istituto Officina dei Materiali, 34149, Trieste, Italy.,Dipartimento di Scienze Chimiche e Farmaceutiche, Universitá di Trieste, 34127, Trieste, Italy
| | - M Simon
- Sorbonne Universités, UPMC Univ Paris 06, CNRS, UMR 7614, Laboratoire de Chimie Physique-Matière et Rayonnement, 75005, Paris Cedex 05, France
| | - J H D Eland
- Department of Physics, University of Gothenburg, Origovägen 6B, SE-412 96, Gothenburg, Sweden.,Department of Chemistry, Physical and Theoretical Chemistry Laboratory, Oxford University, South Parks Road, Oxford, OX1 3QZ, UK
| | - N Došlić
- Institut Ruđer Bošković, Bijenička cesta 54, 10000, Zagreb, Croatia
| | - R Feifel
- Department of Physics, University of Gothenburg, Origovägen 6B, SE-412 96, Gothenburg, Sweden
| | - M N Piancastelli
- Sorbonne Universités, UPMC Univ Paris 06, CNRS, UMR 7614, Laboratoire de Chimie Physique-Matière et Rayonnement, 75005, Paris Cedex 05, France. .,Department of Physics and Astronomy, Uppsala University, SE-751 20, Uppsala, Sweden.
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23
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Hydrogen Bonds and Life in the Universe. Life (Basel) 2018; 8:life8010001. [PMID: 29301382 PMCID: PMC5871933 DOI: 10.3390/life8010001] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2017] [Revised: 12/18/2017] [Accepted: 12/18/2017] [Indexed: 11/17/2022] Open
Abstract
The scientific community is allocating more and more resources to space missions and astronomical observations dedicated to the search for life beyond Earth. This experimental endeavor needs to be backed by a theoretical framework aimed at defining universal criteria for the existence of life. With this aim in mind, we have explored which chemical and physical properties should be expected for life possibly different from the terrestrial one, but similarly sustained by genetic and catalytic molecules. We show that functional molecules performing genetic and catalytic tasks must feature a hierarchy of chemical interactions operating in distinct energy bands. Of all known chemical bonds and forces, only hydrogen bonds are able to mediate the directional interactions of lower energy that are needed for the operation of genetic and catalytic tasks. For this reason and because of the unique quantum properties of hydrogen bonding, the functional molecules involved in life processes are predicted to have extensive hydrogen-bonding capabilities. A molecular medium generating a hydrogen-bond network is probably essential to support the activity of the functional molecules. These hydrogen-bond requirements constrain the viability of hypothetical biochemistries alternative to the terrestrial one, provide thermal limits to life molecular processes, and offer a conceptual framework to define a transition from a “covalent-bond stage” to a “hydrogen-bond stage” in prebiotic chemistry.
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24
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Prlj A, Vannay L, Corminboeuf C. Fluorescence Quenching in BODIPY Dyes: The Role of Intramolecular Interactions and Charge Transfer. Helv Chim Acta 2017. [DOI: 10.1002/hlca.201700093] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Affiliation(s)
- Antonio Prlj
- Institut des Sciences et Ingénierie Chimiques; École polytechnique fédérale de Lausanne; CH-1015 Lausanne
| | - Laurent Vannay
- Institut des Sciences et Ingénierie Chimiques; École polytechnique fédérale de Lausanne; CH-1015 Lausanne
| | - Clemence Corminboeuf
- Institut des Sciences et Ingénierie Chimiques; École polytechnique fédérale de Lausanne; CH-1015 Lausanne
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25
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Novak J, Prlj A, Basarić N, Corminboeuf C, Došlić N. Photochemistry of 1- and 2-Naphthols and Their Water Clusters: The Role of1ππ*(La) Mediated Hydrogen Transfer to Carbon Atoms. Chemistry 2017; 23:8244-8251. [DOI: 10.1002/chem.201700691] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2017] [Indexed: 11/10/2022]
Affiliation(s)
- Jurica Novak
- Department of Physical Chemistry; Ruđer Bošković Institute; Bijenička cesta 54 10000 Zagreb Croatia
| | - Antonio Prlj
- Institut des Sciences et Ingénierie Chimiques; Ecole Polytechnique Fédérale de Lausanne; 1015 Lausanne Switzerland
| | - Nikola Basarić
- Department of Organic Chemistry and Biochemistry; Ruđer Bošković Institute; Bijenička cesta 54 10000 Zagreb Croatia
| | - Clémence Corminboeuf
- Institut des Sciences et Ingénierie Chimiques; Ecole Polytechnique Fédérale de Lausanne; 1015 Lausanne Switzerland
| | - Nađa Došlić
- Department of Physical Chemistry; Ruđer Bošković Institute; Bijenička cesta 54 10000 Zagreb Croatia
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26
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Geng T, Schalk O, Neville SP, Hansson T, Thomas RD. Dynamics in higher lying excited states: Valence to Rydberg transitions in the relaxation paths of pyrrole and methylated derivatives. J Chem Phys 2017; 146:144307. [DOI: 10.1063/1.4979681] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Ting Geng
- Department of Physics, AlbaNova University Centre, Stockholm University, Roslagstullsbacken 21, 106 91 Stockholm, Sweden
| | - Oliver Schalk
- Department of Physics, AlbaNova University Centre, Stockholm University, Roslagstullsbacken 21, 106 91 Stockholm, Sweden
| | - Simon P. Neville
- Department of Chemistry, University of Ottawa, 10 Marie Curie, Ottawa, Ontario K1N 6N5, Canada
| | - Tony Hansson
- Department of Physics, AlbaNova University Centre, Stockholm University, Roslagstullsbacken 21, 106 91 Stockholm, Sweden
| | - Richard D. Thomas
- Department of Physics, AlbaNova University Centre, Stockholm University, Roslagstullsbacken 21, 106 91 Stockholm, Sweden
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27
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Mališ M, Došlić N. Nonradiative Relaxation Mechanisms of UV Excited Phenylalanine Residues: A Comparative Computational Study. Molecules 2017; 22:E493. [PMID: 28335582 PMCID: PMC6155328 DOI: 10.3390/molecules22030493] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2017] [Revised: 03/09/2017] [Accepted: 03/16/2017] [Indexed: 11/17/2022] Open
Abstract
The present work is directed toward understanding the mechanisms of excited state deactivation in three neutral model peptides containing the phenylalanine residue. The excited state dynamics of theγL(g+)folded form of N-acetylphenylalaninylamide (NAPA B) and its amide-N-methylated derivative (NAPMA B) is reviewed and compared to the dynamics of the monohydrated structure of NAPA (NAPAH). The goal is to unravel how the environment, and in particular solvation, impacts the photodynamics of peptides. The systems are investigated using reaction path calculations and surface hopping nonadiabatic dynamics based on the coupled cluster doubles (CC2) method and time-dependent density functional theory. The work emphasizes the role that excitation transfer from the phenylππ*to amidenπ*state plays in the deactivation of the three systems and shows how the ease of out-of-plane distortions of the amide group determines the rate of population transfer between the two electronic states. The subsequent dynamics on thenπ*state is barrierless along several pathways and leads to fast deactivation to the ground electronic state.
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Affiliation(s)
- Momir Mališ
- Ruđer Bošković Institute, HR-10000 Zagreb, Croatia.
- Ecole polytechnique fédérale de Lausanne, CH-1015 Lausanne, Switzerland.
| | - Nađa Došlić
- Ruđer Bošković Institute, HR-10000 Zagreb, Croatia.
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28
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Horton SL, Liu Y, Chakraborty P, Matsika S, Weinacht T. Ultrafast internal conversion dynamics of highly excited pyrrole studied with VUV/UV pump probe spectroscopy. J Chem Phys 2017; 146:064306. [DOI: 10.1063/1.4975765] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Spencer L. Horton
- Department of Physics and Astronomy, Stony Brook University, Stony Brook, New York 11794, USA
| | - Yusong Liu
- Department of Physics and Astronomy, Stony Brook University, Stony Brook, New York 11794, USA
| | - Pratip Chakraborty
- Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122, USA
| | - Spiridoula Matsika
- Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122, USA
| | - Thomas Weinacht
- Department of Physics and Astronomy, Stony Brook University, Stony Brook, New York 11794, USA
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29
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Cole-Filipiak NC, Staniforth M, d. N. Rodrigues N, Peperstraete Y, Stavros VG. Ultrafast Dissociation Dynamics of 2-Ethylpyrrole. J Phys Chem A 2017; 121:969-976. [DOI: 10.1021/acs.jpca.6b12228] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Neil C. Cole-Filipiak
- Department
of Chemistry, University of Warwick, Library Road, Coventry CV4 7AL, United Kingdom
| | - Michael Staniforth
- Department
of Chemistry, University of Warwick, Library Road, Coventry CV4 7AL, United Kingdom
- Department
of Physics, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, United Kingdom
| | | | - Yoann Peperstraete
- AILES
beamline, L’Orme des Merisiers, Synchrotron SOLEIL, Saint Aubin, BP 48, 91192 Gif sur Yvette Cedex, France
| | - Vasilios G. Stavros
- Department
of Chemistry, University of Warwick, Library Road, Coventry CV4 7AL, United Kingdom
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30
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Yang D, Chen Z, He Z, Wang H, Min Y, Yuan K, Dai D, Wu G, Yang X. Ultrafast excited-state dynamics of 2,4-dimethylpyrrole. Phys Chem Chem Phys 2017; 19:29146-29152. [DOI: 10.1039/c7cp06292c] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Ultrafast excited-state dynamics of 2,4-dimethylpyrrole are studied in detail following deep UV excitation.
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Affiliation(s)
- Dongyuan Yang
- State Key Laboratory of Molecular Reaction Dynamics
- Dalian Institute of Chemical Physics
- Dalian 116023
- China
- University of Chinese Academy of Sciences
| | - Zhichao Chen
- State Key Laboratory of Molecular Reaction Dynamics
- Dalian Institute of Chemical Physics
- Dalian 116023
- China
| | - Zhigang He
- State Key Laboratory of Molecular Reaction Dynamics
- Dalian Institute of Chemical Physics
- Dalian 116023
- China
| | - Hengding Wang
- State Key Laboratory of Molecular Reaction Dynamics
- Dalian Institute of Chemical Physics
- Dalian 116023
- China
- University of Chinese Academy of Sciences
| | - Yanjun Min
- State Key Laboratory of Molecular Reaction Dynamics
- Dalian Institute of Chemical Physics
- Dalian 116023
- China
- University of Chinese Academy of Sciences
| | - Kaijun Yuan
- State Key Laboratory of Molecular Reaction Dynamics
- Dalian Institute of Chemical Physics
- Dalian 116023
- China
| | - Dongxu Dai
- State Key Laboratory of Molecular Reaction Dynamics
- Dalian Institute of Chemical Physics
- Dalian 116023
- China
- Synergetic Innovation Center of Quantum Information & Quantum Physics
| | - Guorong Wu
- State Key Laboratory of Molecular Reaction Dynamics
- Dalian Institute of Chemical Physics
- Dalian 116023
- China
- Synergetic Innovation Center of Quantum Information & Quantum Physics
| | - Xueming Yang
- State Key Laboratory of Molecular Reaction Dynamics
- Dalian Institute of Chemical Physics
- Dalian 116023
- China
- Synergetic Innovation Center of Quantum Information & Quantum Physics
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31
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Crane SW, Zawadzki MM, Thompson JOF, Kotsina N, Ghafur O, Townsend D. Caveats in the interpretation of time-resolved photoionization measurements: A photoelectron imaging study of pyrrole. J Chem Phys 2016; 145:234304. [DOI: 10.1063/1.4972096] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Stuart W. Crane
- Institute of Photonics and Quantum Sciences, Heriot-Watt University, Edinburgh EH14 4AS, United Kingdom
| | - Magdalena M. Zawadzki
- Institute of Photonics and Quantum Sciences, Heriot-Watt University, Edinburgh EH14 4AS, United Kingdom
| | - James O. F. Thompson
- Institute of Photonics and Quantum Sciences, Heriot-Watt University, Edinburgh EH14 4AS, United Kingdom
| | - Nikoleta Kotsina
- Institute of Photonics and Quantum Sciences, Heriot-Watt University, Edinburgh EH14 4AS, United Kingdom
| | - Omair Ghafur
- Institute of Photonics and Quantum Sciences, Heriot-Watt University, Edinburgh EH14 4AS, United Kingdom
| | - Dave Townsend
- Institute of Photonics and Quantum Sciences, Heriot-Watt University, Edinburgh EH14 4AS, United Kingdom
- Institute of Chemical Sciences, Heriot-Watt University, Edinburgh EH14 4AS, United Kingdom
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32
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Thisuwan J, Chaiwongwattana S, Sapunar M, Sagarik K, Došlić N. Photochemical deactivation pathways of microsolvated hydroxylamine. J Photochem Photobiol A Chem 2016. [DOI: 10.1016/j.jphotochem.2016.03.005] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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33
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Barbatti M, Sen K. Effects of different initial condition samplings on photodynamics and spectrum of pyrrole. INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY 2016; 116:762-771. [DOI: 10.1002/qua.25049] [Citation(s) in RCA: 98] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/02/2023]
Affiliation(s)
- Mario Barbatti
- Aix Marseille Université, CNRS, ICR UMR7273; Marseille 13397 France
| | - Kakali Sen
- Department of Chemistry; École Normale Supérieure, UMR ENS-CNRS-UPMC 8640; Paris 75005 France
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34
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Plasser F, Ruckenbauer M, Mai S, Oppel M, Marquetand P, González L. Efficient and Flexible Computation of Many-Electron Wave Function Overlaps. J Chem Theory Comput 2016; 12:1207-19. [PMID: 26854874 PMCID: PMC4785508 DOI: 10.1021/acs.jctc.5b01148] [Citation(s) in RCA: 132] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2015] [Indexed: 11/29/2022]
Abstract
A new algorithm for the computation of the overlap between many-electron wave functions is described. This algorithm allows for the extensive use of recurring intermediates and thus provides high computational efficiency. Because of the general formalism employed, overlaps can be computed for varying wave function types, molecular orbitals, basis sets, and molecular geometries. This paves the way for efficiently computing nonadiabatic interaction terms for dynamics simulations. In addition, other application areas can be envisaged, such as the comparison of wave functions constructed at different levels of theory. Aside from explaining the algorithm and evaluating the performance, a detailed analysis of the numerical stability of wave function overlaps is carried out, and strategies for overcoming potential severe pitfalls due to displaced atoms and truncated wave functions are presented.
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Affiliation(s)
- Felix Plasser
- Institute for Theoretical
Chemistry, University of Vienna, Währinger Straße 17, 1090 Vienna, Austria
| | - Matthias Ruckenbauer
- Institute for Theoretical
Chemistry, University of Vienna, Währinger Straße 17, 1090 Vienna, Austria
| | - Sebastian Mai
- Institute for Theoretical
Chemistry, University of Vienna, Währinger Straße 17, 1090 Vienna, Austria
| | - Markus Oppel
- Institute for Theoretical
Chemistry, University of Vienna, Währinger Straße 17, 1090 Vienna, Austria
| | - Philipp Marquetand
- Institute for Theoretical
Chemistry, University of Vienna, Währinger Straße 17, 1090 Vienna, Austria
| | - Leticia González
- Institute for Theoretical
Chemistry, University of Vienna, Währinger Straße 17, 1090 Vienna, Austria
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35
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Ponzi A, Sapunar M, Angeli C, Cimiraglia R, Došlić N, Decleva P. Photoionization of furan from the ground and excited electronic states. J Chem Phys 2016; 144:084307. [DOI: 10.1063/1.4941608] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- Aurora Ponzi
- Department of Physical Chemistry, R. Bošković Institute, Bijenička 54, 10000 Zagreb, Croatia
| | - Marin Sapunar
- Department of Physical Chemistry, R. Bošković Institute, Bijenička 54, 10000 Zagreb, Croatia
| | - Celestino Angeli
- Dipartimento di Scienze Chimiche e Farmaceutiche, Università di Ferrara, via Fossato di Mortara 17, 44121 Ferrara, Italy
| | - Renzo Cimiraglia
- Dipartimento di Scienze Chimiche e Farmaceutiche, Università di Ferrara, via Fossato di Mortara 17, 44121 Ferrara, Italy
| | - Nađa Došlić
- Department of Physical Chemistry, R. Bošković Institute, Bijenička 54, 10000 Zagreb, Croatia
| | - Piero Decleva
- Dipartimento di Scienze Chimiche e Farmaceutiche, Università degli Studi di Trieste, via L. Giorgieri 1, 34127 Trieste, Italy
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36
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Mullaney JC, Zaleski DP, Tew DP, Walker NR, Legon AC. Geometry of an Isolated Dimer of Imidazole Characterised by Rotational Spectroscopy and Ab Initio Calculations. Chemphyschem 2016; 17:1154-8. [DOI: 10.1002/cphc.201501179] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2015] [Indexed: 11/07/2022]
Affiliation(s)
- John C. Mullaney
- School of Chemistry, Bedson Building; Newcastle University; Newcastle upon Tyne, Tyne and Wear NE1 7RU UK
| | - Daniel P. Zaleski
- School of Chemistry, Bedson Building; Newcastle University; Newcastle upon Tyne, Tyne and Wear NE1 7RU UK
- Argonne National Laboratory; Chemical Sciences & Engineering; 9700 S. Cass Ave., Bldg. 200 Lemont IL 60439 USA
| | - David P. Tew
- School of Chemistry; University of Bristol; Bristol BS8 1TS UK
| | - Nicholas R. Walker
- School of Chemistry, Bedson Building; Newcastle University; Newcastle upon Tyne, Tyne and Wear NE1 7RU UK
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37
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Prlj A, Fabrizio A, Corminboeuf C. Rationalizing fluorescence quenching in meso-BODIPY dyes. Phys Chem Chem Phys 2016; 18:32668-32672. [DOI: 10.1039/c6cp06799a] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
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38
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Prlj A, Došlić N, Corminboeuf C. How does tetraphenylethylene relax from its excited states? Phys Chem Chem Phys 2016; 18:11606-9. [DOI: 10.1039/c5cp04546k] [Citation(s) in RCA: 81] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Photocyclization play a key role in the deactivation mechanism of tetraphenylethylene.
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Affiliation(s)
- Antonio Prlj
- Institut des Sciences et Ingénierie Chimiques
- École Polytechnique Fédérale de Lausanne
- CH-1015 Lausanne
- Switzerland
| | - Nađa Došlić
- Department of Physical Chemistry
- Ruđer Bošković Institute
- HR-10000 Zagreb
- Croatia
| | - Clémence Corminboeuf
- Institut des Sciences et Ingénierie Chimiques
- École Polytechnique Fédérale de Lausanne
- CH-1015 Lausanne
- Switzerland
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39
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Tuna D, Lefrancois D, Wolański Ł, Gozem S, Schapiro I, Andruniów T, Dreuw A, Olivucci M. Assessment of Approximate Coupled-Cluster and Algebraic-Diagrammatic-Construction Methods for Ground- and Excited-State Reaction Paths and the Conical-Intersection Seam of a Retinal-Chromophore Model. J Chem Theory Comput 2015; 11:5758-81. [PMID: 26642989 DOI: 10.1021/acs.jctc.5b00022] [Citation(s) in RCA: 117] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
As a minimal model of the chromophore of rhodopsin proteins, the penta-2,4-dieniminium cation (PSB3) poses a challenging test system for the assessment of electronic-structure methods for the exploration of ground- and excited-state potential-energy surfaces, the topography of conical intersections, and the dimensionality (topology) of the branching space. Herein, we report on the performance of the approximate linear-response coupled-cluster method of second order (CC2) and the algebraic-diagrammatic-construction scheme of the polarization propagator of second and third orders (ADC(2) and ADC(3)). For the ADC(2) method, we considered both the strict and extended variants (ADC(2)-s and ADC(2)-x). For both CC2 and ADC methods, we also tested the spin-component-scaled (SCS) and spin-opposite-scaled (SOS) variants. We have explored several ground- and excited-state reaction paths, a circular path centered around the S1/S0 surface crossing, and a 2D scan of the potential-energy surfaces along the branching space. We find that the CC2 and ADC methods yield a different dimensionality of the intersection space. While the ADC methods yield a linear intersection topology, we find a conical intersection topology for the CC2 method. We present computational evidence showing that the linear-response CC2 method yields a surface crossing between the reference state and the first response state featuring characteristics that are expected for a true conical intersection. Finally, we test the performance of these methods for the approximate geometry optimization of the S1/S0 minimum-energy conical intersection and compare the geometries with available data from multireference methods. The present study provides new insight into the performance of linear-response CC2 and polarization-propagator ADC methods for molecular electronic spectroscopy and applications in computational photochemistry.
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Affiliation(s)
- Deniz Tuna
- Max-Planck-Institut für Kohlenforschung , 45470 Mülheim an der Ruhr, Germany
| | - Daniel Lefrancois
- Interdisciplinary Center for Scientific Computing, University of Heidelberg , 69120 Heidelberg, Germany
| | - Łukasz Wolański
- Department of Chemistry, Wrocław University of Technology , 50370 Wrocław, Poland
| | - Samer Gozem
- Department of Chemistry, University of Southern California , Los Angeles, California 90089, United States
| | - Igor Schapiro
- Institut de Physique et Chimie des Matériaux de Strasbourg & Labex NIE, Université de Strasbourg, CNRS UMR 7504 , Strasbourg 67034, France
| | - Tadeusz Andruniów
- Department of Chemistry, Wrocław University of Technology , 50370 Wrocław, Poland
| | - Andreas Dreuw
- Interdisciplinary Center for Scientific Computing, University of Heidelberg , 69120 Heidelberg, Germany
| | - Massimo Olivucci
- Department of Chemistry, Bowling Green State University , Bowling Green, Ohio 43402, United States.,Dipartimento di Biotecnologie, Chimica e Farmacia, Universitá de Siena , 53100 Siena, Italy
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40
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Chaiwongwattana S, Sapunar M, Ponzi A, Decleva P, Došlić N. Exploration of Excited State Deactivation Pathways of Adenine Monohydrates. J Phys Chem A 2015; 119:10637-44. [DOI: 10.1021/acs.jpca.5b07496] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
| | - Marin Sapunar
- Ruđer Bošković Institute, Bijenička 54, 10000 Zagreb, Croatia
| | - Aurora Ponzi
- Ruđer Bošković Institute, Bijenička 54, 10000 Zagreb, Croatia
| | - Piero Decleva
- Dipartimento di
Scienze Chimiche, Università di Trieste, 34127 Trieste, Italy
| | - Nađa Došlić
- Ruđer Bošković Institute, Bijenička 54, 10000 Zagreb, Croatia
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