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He J, Bai M, Xiao X, Qiu S, Chen W, Li J, Yu Y, Tian W. Intramolecular Cation-π Interactions Organize Bowl-Shaped, Luminescent Molecular Containers. Angew Chem Int Ed Engl 2024; 63:e202402697. [PMID: 38433608 DOI: 10.1002/anie.202402697] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2024] [Revised: 02/28/2024] [Accepted: 02/28/2024] [Indexed: 03/05/2024]
Abstract
Molecules with nonplanar architectures are highly desirable due to their unique topological structures and functions. We report here the synthesis of two molecular containers (1 ⋅ 3Br- and 1 ⋅ 3Cl-), which utilize intramolecular cation-π interactions to enforce macrocylic arrangements and exhibit high binding affinity and luminescent properties. Remarkably, the geometry of the cation-π interaction can be flexibly tailored to achieve a precise ring arrangement, irrespective of the angle of the noncovalent bonds. Additionally, the C-H⋅⋅⋅Br- hydrogen bonds within the container are also conducive to stabilizing the bowl-shaped conformation. These bowl-shaped conformations were confirmed both in solution through NMR spectroscopy and in the solid state by X-ray studies. 1 ⋅ 3Br- shows high binding affinity and selectivity: F->Cl-, through C-H⋅⋅⋅X- (X=F, Cl) hydrogen bonds. Additionally, these containers exhibited blue fluorescence in solution and yellow room-temperature phosphorescence (RTP) in the solid state. Our findings illustrate the utility of cation-π interactions in designing functional molecules.
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Affiliation(s)
- Jia He
- Shaanxi Key Laboratory of Macromolecular Science and Technology, Xi'an Key Laboratory of Hybrid Luminescent Materials and Photonic Device, MOE Key Laboratory of Material Physics and Chemistry under Extraordinary Conditions, School of Chemistry and Chemical Engineering, Northwestern Polytechnical University., Xi'an, 710072, Shaanxi, P. R. China
| | - Minggui Bai
- Shaanxi Key Laboratory of Macromolecular Science and Technology, Xi'an Key Laboratory of Hybrid Luminescent Materials and Photonic Device, MOE Key Laboratory of Material Physics and Chemistry under Extraordinary Conditions, School of Chemistry and Chemical Engineering, Northwestern Polytechnical University., Xi'an, 710072, Shaanxi, P. R. China
| | - Xuedong Xiao
- Shaanxi Key Laboratory of Macromolecular Science and Technology, Xi'an Key Laboratory of Hybrid Luminescent Materials and Photonic Device, MOE Key Laboratory of Material Physics and Chemistry under Extraordinary Conditions, School of Chemistry and Chemical Engineering, Northwestern Polytechnical University., Xi'an, 710072, Shaanxi, P. R. China
| | - Shuai Qiu
- Shaanxi Key Laboratory of Macromolecular Science and Technology, Xi'an Key Laboratory of Hybrid Luminescent Materials and Photonic Device, MOE Key Laboratory of Material Physics and Chemistry under Extraordinary Conditions, School of Chemistry and Chemical Engineering, Northwestern Polytechnical University., Xi'an, 710072, Shaanxi, P. R. China
| | - Wenzhuo Chen
- Shaanxi Key Laboratory of Macromolecular Science and Technology, Xi'an Key Laboratory of Hybrid Luminescent Materials and Photonic Device, MOE Key Laboratory of Material Physics and Chemistry under Extraordinary Conditions, School of Chemistry and Chemical Engineering, Northwestern Polytechnical University., Xi'an, 710072, Shaanxi, P. R. China
| | - Jiaqi Li
- Shaanxi Key Laboratory of Macromolecular Science and Technology, Xi'an Key Laboratory of Hybrid Luminescent Materials and Photonic Device, MOE Key Laboratory of Material Physics and Chemistry under Extraordinary Conditions, School of Chemistry and Chemical Engineering, Northwestern Polytechnical University., Xi'an, 710072, Shaanxi, P. R. China
| | - Yang Yu
- Center for Supramolecular Chemistry & Catalysis and Department of Chemistry, College of Science, Shanghai University, 99 Shang-Da Road, Shanghai, 200444, China
| | - Wei Tian
- Shaanxi Key Laboratory of Macromolecular Science and Technology, Xi'an Key Laboratory of Hybrid Luminescent Materials and Photonic Device, MOE Key Laboratory of Material Physics and Chemistry under Extraordinary Conditions, School of Chemistry and Chemical Engineering, Northwestern Polytechnical University., Xi'an, 710072, Shaanxi, P. R. China
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Weiße A, Seichter W, Mazik M. Supramolecular Motifs in the Crystal Structures of Triethylbenzene Derivatives Bearing Pyridinium Subunits in Combination with Pyrimidinyl or Pyridinyl Groups. Molecules 2023; 28:6485. [PMID: 37764259 PMCID: PMC10535844 DOI: 10.3390/molecules28186485] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2023] [Revised: 08/13/2023] [Accepted: 08/23/2023] [Indexed: 09/29/2023] Open
Abstract
A series of mono- and dicationic 1,3,5-trisubstituted 2,4,6-triethylbenzenes containing pyridinium groups in combination with aminopyrimidine-/aminopyridine-based recognition units were synthesized and crystallographically studied. The combination of neutral and ionic building blocks represents a promising strategy for the development of effective and selective artificial receptors for anionic substrates. In the crystalline state, the investigated compounds show a tendency to bind the counterion PF6- in the cavity formed by the three functionalized side-arms. The intermolecular interactions with the PF6- ion comprise N-H∙∙∙F and C-H∙∙∙F bonds. Detailed analysis of various supramolecular motifs, including interactions with solvent molecules, provides deeper insights into the processes of molecular recognition. The information obtained is useful in the development of new receptor molecules for anions and in the selection of the most appropriate counterion.
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Affiliation(s)
| | | | - Monika Mazik
- Institut für Organische Chemie, Technische Universität Bergakademie Freiberg, Leipziger Straße 29, 09596 Freiberg, Germany; (A.W.); (W.S.)
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Chiacchio MA, Legnani L, Fassi EMA, Roda G, Grazioso G. Development of AMBER Parameters for Molecular Simulations of Selected Boron-Based Covalent Ligands. Molecules 2023; 28:molecules28062866. [PMID: 36985837 PMCID: PMC10057150 DOI: 10.3390/molecules28062866] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2023] [Revised: 03/20/2023] [Accepted: 03/21/2023] [Indexed: 03/30/2023] Open
Abstract
Boron containing compounds (BCCs) aroused increasing interest in the scientific community due to their wide application as drugs in various fields. In order to design new compounds hopefully endowed with pharmacological activity and also investigate their conformational behavior, the support of computational studies is crucial. Nevertheless, the suitable molecular mechanics parameterization and the force fields needed to perform these simulations are not completely available for this class of molecules. In this paper, Amber force field parameters for phenyl-, benzyl-, benzylamino-, and methylamino-boronates, a group of boron-containing compounds involved in different branches of the medicinal chemistry, were created. The robustness of the obtained data was confirmed through molecular dynamics simulations on ligand/β-lactamases covalent complexes. The ligand torsional angles, populated over the trajectory frames, were confirmed by values found in the ligand geometries, located through optimizations at the DFT/B3LYP/6-31g(d) level, using water as a solvent. In summary, this study successfully provided a library of parameters, opening the possibility to perform molecular dynamics simulations of this class of boron-containing compounds.
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Affiliation(s)
- Maria Assunta Chiacchio
- Department of Drug and Health Sciences, University of Catania, Viale A. Doria 6, 95125 Catania, Italy
| | - Laura Legnani
- Department of Biotechnology and Biosciences, University of Milano-Bicocca, Piazza della Scienza 2, 20126 Milan, Italy
| | | | - Gabriella Roda
- Department of Pharmaceutical Sciences, University of Milan, Via L. Mangiagalli 25, 20133 Milan, Italy
| | - Giovanni Grazioso
- Department of Pharmaceutical Sciences, University of Milan, Via L. Mangiagalli 25, 20133 Milan, Italy
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Abstract
Considering the wide interest in (benz)imidazolium-based drugs, we here report our study on a benzimidazolium-based organic cage as potential antimicrobial and antifungal agent. Cytotoxicity studies on a human derived cell line, SH-SY5Y, showed that the cage is not cytotoxic at all at the investigated concentrations. Anion binding studies demonstrated that the cage can bind anions (chloride and nitrate, in particular) both in organic solvent and 20%v D2O/CD3CN mixture. The cage was also tested as anionophore, showing a weak but measurable transport of chloride and nitrate across LUVs vesicles. Nonetheless, the compounds have antimicrobial activity towards Staphylococcus aureus (Gram-positive bacteria). This is probably the first organic cage studied as anionophore and antimicrobial agent.
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Danjo H, Asai K, Tanaka T, Ono D, Kawahata M, Iwatsuki S. Preparation of tricationic tris(pyridylpalladium(II)) metallacyclophane as an anion receptor. Chem Commun (Camb) 2022; 58:2196-2199. [PMID: 35072179 DOI: 10.1039/d1cc05563a] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
A tricationic tris(pyridylpalladium(II)) metallacyclophane was prepared from 3,5-dibromopyridine by a successive treatment with tetrakis(triphenylphosphine)palladium(0), diphosphine, and silver salt. Single-crystal X-ray diffraction analysis revealed that the metallacyclophane incorporated one of three counter anions into its hole-shaped cavity to form multidentate C-H⋯anion interactions. Solution-phase 1H NMR experiments in DMSO-d6 indicated that the metallacyclophane exhibited selective binding behavior toward nitrate, tetrafluoroborate, p-toluenesulfonate, perchlorate, and hydrogen sulfate ions, whereas the hexafluoroantimonate ion exhibited only weak interaction toward the metallacyclophane. This anion recognition behavior was further demonstrated by an extraction experiment of water-soluble sulfonate dyes.
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Affiliation(s)
- Hiroshi Danjo
- Department of Chemistry, Konan University, 8-9-1 Okamoto, Higashinada, Kobe 658-8501, Japan.
| | - Kohei Asai
- Graduate School of Natural Science, Konan University, 8-9-1 Okamoto, Higashinada, Kobe 658-8501, Japan
| | - Tomoya Tanaka
- Department of Chemistry, Konan University, 8-9-1 Okamoto, Higashinada, Kobe 658-8501, Japan.
| | - Daiki Ono
- Department of Chemistry, Konan University, 8-9-1 Okamoto, Higashinada, Kobe 658-8501, Japan.
| | - Masatoshi Kawahata
- Showa Pharmaceutical University, 3-3165 Higashi-Tamagawagakuen, Machida, Tokyo 194-8543, Japan
| | - Satoshi Iwatsuki
- Department of Chemistry, Konan University, 8-9-1 Okamoto, Higashinada, Kobe 658-8501, Japan.
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Vicent C, Valls A, Escorihuela J, Altava B, Luis S. Unveiling anion-induced folding in tripodal imidazolium receptors by ion-mobility mass spectrometry. Chem Commun (Camb) 2021; 57:8616-8619. [PMID: 34369516 DOI: 10.1039/d1cc02818a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The anion-induced folding of tripodal imidazolium receptors has been investigated by NMR spectroscopy, electrospray ionization ion mobility mass spectrometry and DFT calculations. Such folding can be switched by anion release upon collision induced dissociation.
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Affiliation(s)
- Cristian Vicent
- Servei Central d'Instrumentació Científica (SCIC), Universitat Jaume I, Avda. Sos Baynat s/n, 12006 Castellón, Spain.
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7
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Kashyap S, Singh R, Singh UP. Inorganic and organic anion sensing by azole family members. Coord Chem Rev 2020. [DOI: 10.1016/j.ccr.2020.213369] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Scheiner S, Michalczyk M, Zierkiewicz W. Coordination of anions by noncovalently bonded σ-hole ligands. Coord Chem Rev 2020. [DOI: 10.1016/j.ccr.2019.213136] [Citation(s) in RCA: 34] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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Aletti AB, Miljkovic A, Toma L, Bruno R, Armentano D, Gunnlaugsson T, Bergamaschi G, Amendola V. Halide-Controlled Extending–Shrinking Motion of a Covalent Cage. J Org Chem 2019; 84:4221-4228. [DOI: 10.1021/acs.joc.9b00219] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Anna B. Aletti
- School of Chemistry, Trinity College Dublin, The University of Dublin, 152-160 Pearse Street, Dublin 2, Ireland
| | - Ana Miljkovic
- Department of Chemistry, University of Pavia, v.le Taramelli 12, Pavia 27100, Italy
| | - Lucio Toma
- Department of Chemistry, University of Pavia, v.le Taramelli 12, Pavia 27100, Italy
| | - Rosaria Bruno
- Department of Chemistry & Chemical Technologies, via Pietro Bucci, Arcavacata di Rende, Cosenza 87036, Italy
| | - Donatella Armentano
- Department of Chemistry & Chemical Technologies, via Pietro Bucci, Arcavacata di Rende, Cosenza 87036, Italy
| | - Thorfinnur Gunnlaugsson
- School of Chemistry, Trinity College Dublin, The University of Dublin, 152-160 Pearse Street, Dublin 2, Ireland
| | - Greta Bergamaschi
- Consiglio Nazionale Delle Ricerche, Istituto di Chimica del Riconoscimento Molecolare (ICRM), via M. Bianco 9, Milano 20131, Italy
| | - Valeria Amendola
- Department of Chemistry, University of Pavia, v.le Taramelli 12, Pavia 27100, Italy
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Aloui L, Elhabiri M, Platas-Iglesias C, Esteban-Gómez D, Abidi R, Chetcuti MJ. Synthesis and Characterization of Positively Charged tris
-Imidazolium Calix[6]arene Hosts for Anion Recognition. ChemistrySelect 2019. [DOI: 10.1002/slct.201803890] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Lobna Aloui
- Equipe de Chimie Organométallique; CNRS-UMR 7042-LIMA, ECPM, Université de Strasbourg; 25 rue Becquerel 67000 Strasbourg France
- Laboratoire d'Applications de la Chimie aux Ressources et Substances Naturelles et l'Environnement, Faculté des sciences de Bizerte; Université de Carthage; 7021 Zarzouna Bizerte Tunisie
| | - Mourad Elhabiri
- Equipe de Chimie Bioorganique et Médicinale; CNRS-UMR 7042-LIMA, ECPM, Université de Strasbourg; 25 rue Becquerel 67000 Strasbourg France
| | - Carlos Platas-Iglesias
- Universidade da Coruña; Centro de Investigacións Científicas Avanzadas (CICA) and Departamento de Química Fundamental, Facultade de Ciencias; 15071 A Coruña, Galicia Spain
| | - David Esteban-Gómez
- Universidade da Coruña; Centro de Investigacións Científicas Avanzadas (CICA) and Departamento de Química Fundamental, Facultade de Ciencias; 15071 A Coruña, Galicia Spain
| | - Rym Abidi
- Laboratoire d'Applications de la Chimie aux Ressources et Substances Naturelles et l'Environnement, Faculté des sciences de Bizerte; Université de Carthage; 7021 Zarzouna Bizerte Tunisie
| | - Michael J. Chetcuti
- Equipe de Chimie Organométallique; CNRS-UMR 7042-LIMA, ECPM, Université de Strasbourg; 25 rue Becquerel 67000 Strasbourg France
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Differential Binding of Tetrel-Bonding Bipodal Receptors to Monatomic and Polyatomic Anions. Molecules 2019; 24:molecules24020227. [PMID: 30634503 PMCID: PMC6358819 DOI: 10.3390/molecules24020227] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2018] [Revised: 01/05/2019] [Accepted: 01/05/2019] [Indexed: 11/22/2022] Open
Abstract
Previous work has demonstrated that a bidentate receptor containing a pair of Sn atoms can engage in very strong interactions with halide ions via tetrel bonds. The question that is addressed here concerns the possibility that a receptor of this type might be designed that would preferentially bind a polyatomic over a monatomic anion since the former might better span the distance between the two Sn atoms. The binding of Cl− was thus compared to that of HCOO−, HSO4−, and H2PO4− with a wide variety of bidentate receptors. A pair of SnFH2 groups, as strong tetrel-binding agents, were first added to a phenyl ring in ortho, meta, and para arrangements. These same groups were also added in 1,3 and 1,4 positions of an aliphatic cyclohexyl ring. The tetrel-bonding groups were placed at the termini of (-C≡C-)n (n = 1,2) extending arms so as to further separate the two Sn atoms. Finally, the Sn atoms were incorporated directly into an eight-membered ring, rather than as appendages. The ordering of the binding energetics follows the HCO2− > Cl− > H2PO4− > HSO4− general pattern, with some variations in selected systems. The tetrel bonding is strong enough that in most cases, it engenders internal deformations within the receptors that allow them to engage in bidentate bonding, even for the monatomic chloride, which mutes any effects of a long Sn···Sn distance within the receptor.
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Wysokiński R, Michalczyk M, Zierkiewicz W, Scheiner S. Influence of monomer deformation on the competition between two types of σ-holes in tetrel bonds. Phys Chem Chem Phys 2019; 21:10336-10346. [DOI: 10.1039/c9cp01759c] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Competition between two competing sites on a tetrel atom is explained by balance between structural deformation and σ-hole intensity.
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Affiliation(s)
- Rafał Wysokiński
- Faculty of Chemistry
- Wrocław University of Science and Technology
- 50-370 Wrocław
- Poland
| | - Mariusz Michalczyk
- Faculty of Chemistry
- Wrocław University of Science and Technology
- 50-370 Wrocław
- Poland
| | - Wiktor Zierkiewicz
- Faculty of Chemistry
- Wrocław University of Science and Technology
- 50-370 Wrocław
- Poland
| | - Steve Scheiner
- Department of Chemistry and Biochemistry
- Utah State University
- Logan
- USA
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15
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Scheiner S. Tetrel Bonding as a Vehicle for Strong and Selective Anion Binding. Molecules 2018; 23:E1147. [PMID: 29751608 PMCID: PMC6100077 DOI: 10.3390/molecules23051147] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2018] [Revised: 05/07/2018] [Accepted: 05/09/2018] [Indexed: 01/22/2023] Open
Abstract
Tetrel atoms T (T = Si, Ge, Sn, and Pb) can engage in very strong noncovalent interactions with nucleophiles, which are commonly referred to as tetrel bonds. The ability of such bonds to bind various anions is assessed with a goal of designing an optimal receptor. The Sn atom seems to form the strongest bonds within the tetrel family. It is most effective in the context of a -SnF₃ group and a further enhancement is observed when a positive charge is placed on the receptor. Connection of the -SnF₃ group to either an imidazolium or triazolium provides a strong halide receptor, which can be improved if its point of attachment is changed from the C to an N atom of either ring. Aromaticity of the ring offers no advantage nor is a cyclic system superior to a simple alkyl amine of any chain length. Placing a pair of -SnF₃ groups on a single molecule to form a bipodal dicationic receptor with two tetrel bonds enhances the binding, but falls short of a simple doubling. These two tetrel groups can be placed on opposite ends of an alkyl diamine chain of any length although SnF₃⁺NH₂(CH₂)nNH₂SnF₃⁺ with n between 2 and 4 seems to offer the strongest halide binding. Of the various anions tested, OH− binds most strongly: OH− > F− > Cl− > Br− > I−. The binding energy of the larger NO₃− and HCO₃− anions is more dependent upon the charge of the receptor. This pattern translates into very strong selectivity of binding one anion over another. The tetrel-bonding receptors bind far more strongly to each anion than an equivalent number of K⁺ counterions, which leads to equilibrium ratios in favor of the former of many orders of magnitude.
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Affiliation(s)
- Steve Scheiner
- Department of Chemistry and Biochemistry, Utah State University, Logan, UT 84322-0300, USA.
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16
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Brea O, Mó O, Yáñez M, Montero-Campillo MM, Alkorta I, Elguero J. Are beryllium-containing biphenyl derivatives efficient anion sponges? J Mol Model 2017; 24:16. [DOI: 10.1007/s00894-017-3551-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2017] [Accepted: 11/27/2017] [Indexed: 11/28/2022]
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17
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Li Y, Yang GH, Shen YY, Xue XS, Li X, Cheng JP. N-tert-Butyl Sulfinyl Squaramide Receptors for Anion Recognition through Assisted tert-Butyl C–H Hydrogen Bonding. J Org Chem 2017; 82:8662-8667. [DOI: 10.1021/acs.joc.7b01634] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Yao Li
- State Key Laboratory of Elemento-Organic
Chemistry, College of Chemistry, Collaborative Innovation Center of
Chemical Science and Engineering, Nankai University, Tianjin 300071, China
| | - Guo-Hui Yang
- State Key Laboratory of Elemento-Organic
Chemistry, College of Chemistry, Collaborative Innovation Center of
Chemical Science and Engineering, Nankai University, Tianjin 300071, China
| | - Ye-Ye Shen
- State Key Laboratory of Elemento-Organic
Chemistry, College of Chemistry, Collaborative Innovation Center of
Chemical Science and Engineering, Nankai University, Tianjin 300071, China
| | - Xiao-Song Xue
- State Key Laboratory of Elemento-Organic
Chemistry, College of Chemistry, Collaborative Innovation Center of
Chemical Science and Engineering, Nankai University, Tianjin 300071, China
| | - Xin Li
- State Key Laboratory of Elemento-Organic
Chemistry, College of Chemistry, Collaborative Innovation Center of
Chemical Science and Engineering, Nankai University, Tianjin 300071, China
| | - Jin-Pei Cheng
- State Key Laboratory of Elemento-Organic
Chemistry, College of Chemistry, Collaborative Innovation Center of
Chemical Science and Engineering, Nankai University, Tianjin 300071, China
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Scheiner S. Comparison of halide receptors based on H, halogen, chalcogen, pnicogen, and tetrel bonds. Faraday Discuss 2017; 203:213-226. [DOI: 10.1039/c7fd00043j] [Citation(s) in RCA: 50] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
A series of halide receptors are constructed and the geometries and energetics of their binding to F−, Cl−, and Br−assessed by quantum calculations. The dicationic receptors are based on a pair of imidazolium units, connectedviaa benzene spacer. The imidazoliums each donate a proton to a halide in a pair of H-bonds. Replacement of the two bonding protons by Br leads to bindingviaa pair of halogen bonds. Likewise, chalcogen, pnicogen, and tetrel bonds occur when the protons are replaced, respectively, by Se, As, and Ge. Regardless of the binding group considered, F−is bound much more strongly than are Cl−and Br−. With respect to the latter two halides, the binding energy is not very sensitive to the nature of the binding atom, whether H or some other atom. But there is a great deal of differentiation with respect to F−, where the order varies as tetrel > H ∼ pnicogen > halogen > chalcogen. The replacement of the various binding atoms by their analogues in the next row of the periodic table enhances the fluoride binding energy by 22–56%. The strongest fluoride binding agents utilize the tetrel bonds of the Sn atom, whereas it is I-halogen bonds that are preferred for Cl−and Br−. After incorporation of thermal and entropic effects, the halogen, chalcogen, and pnicogen bonding receptors do not represent much of an improvement over H-bonds with regard to this selectivity for F−, even I which binds quite strongly. In stark contrast, the tetrel-bonding derivatives, both Ge and Sn, show by far the greatest selectivity for F−over the other halides, as much as 1013, an enhancement of six orders of magnitude when compared to the H-bonding receptor.
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Affiliation(s)
- Steve Scheiner
- Department of Chemistry and Biochemistry
- Utah State University
- Logan
- USA
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Montero-Campillo MM, Corral I, Mó O, Yáñez M, Alkorta I, Elguero J. Beryllium-based fluorenes as efficient anion sponges. Phys Chem Chem Phys 2017; 19:23052-23059. [DOI: 10.1039/c7cp03664g] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The F−, Cl−, CN−, NO2−, NO3−, and SO42− anion affinities of 4,5-bis(BeX)-fluorene (X = H, F, Cl, CN, NC, and OCH3) derivatives have been calculated at the B3LYP/6-311+G(3df,2p)//B3LYP/6-31+G(d,p) level of theory.
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Affiliation(s)
| | - Inés Corral
- Departamento de Química
- Facultad de Ciencias
- Módulo 13
- and Institute of Advanced Chemical Sciences (IadChem) Universidad Autónoma de Madrid
- Campus de Excelencia UAM-CSIC
| | - Otilia Mó
- Departamento de Química
- Facultad de Ciencias
- Módulo 13
- and Institute of Advanced Chemical Sciences (IadChem) Universidad Autónoma de Madrid
- Campus de Excelencia UAM-CSIC
| | - Manuel Yáñez
- Departamento de Química
- Facultad de Ciencias
- Módulo 13
- and Institute of Advanced Chemical Sciences (IadChem) Universidad Autónoma de Madrid
- Campus de Excelencia UAM-CSIC
| | - Ibon Alkorta
- Instituto de Química Médica
- CSIC
- 28006 Madrid
- Spain
| | - José Elguero
- Instituto de Química Médica
- CSIC
- 28006 Madrid
- Spain
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