1
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Hashikawa Y, Murata Y. Direct Through-Space Substituent-π Interactions in Noncovalent Arene-Fullerene Assemblies. Chem Asian J 2024; 19:e202400075. [PMID: 38385611 DOI: 10.1002/asia.202400075] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2024] [Revised: 02/19/2024] [Accepted: 02/21/2024] [Indexed: 02/23/2024]
Abstract
The arene-arene interactions between electron-rich and deficient aromatics have been less understood. Herein, we focus on a [60]fullerene π-surface as an electron-deficient aromatics. Using a 1H signal of H2O@C60 as a magnetic probe, the presence of benzene-fullerene interactions was confirmed. To investigate substituent effects on the noncovalent arene-fullerene interactions, NMR titration experiments were carried out using an open-[60]fullerene and a series of substituted benzenes, i. e., PhX (X=NO2, CN, Cl, OMe, H, CH3, and NH2), demonstrating a 1 : 2 stoichiometry with a positive correlation between stabilization energies upon the first association (ΔG1) and Hammet constants (σm). The destabilization of the self-assembled structure for X=OMe with a σ-withdrawing nature clearly showed direct through-space substituent-π interactions describable by the Wheeler-Houk model while the second association was suggested to be considerably perturbed by the secondary effects.
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Affiliation(s)
- Yoshifumi Hashikawa
- Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan
| | - Yasujiro Murata
- Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan
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2
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Zhou J, Jia S, Xue X, Skitnevskaya AD, Wang E, Wang X, Hao X, Zeng Q, Kuleff AI, Dorn A, Ren X. Revealing the Role of N Heteroatoms in Noncovalent Aromatic Interactions by Ultrafast Intermolecular Coulombic Decay. J Phys Chem Lett 2024; 15:1529-1538. [PMID: 38299504 DOI: 10.1021/acs.jpclett.3c02979] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2024]
Abstract
Despite the widely recognized importance of noncovalent interactions involving aromatic rings in many fields, our understanding of the underlying forces and structural patterns, especially the impact of heteroaromaticity, is still incomplete. Here, we investigate the relaxation processes that follow inner-valence ionization in a range of molecular dimers involving various combinations of benzene, pyridine, and pyrimidine, which initiate an ultrafast intermolecular Coulombic decay process. Multiparticle coincidence momentum spectroscopy, combined with ab initio calculations, enables us to explore the principal orientations of these fundamental dimers and, thus, to elucidate the influence of N heteroatoms on the relative preference of the aromatic π-stacking, H-bonding, and CH-π interactions and their dependence on the number of nitrogen atoms in the rings. Our studies reveal a sensitive tool for the structural imaging of molecular complexes and provide a more complete understanding of the effects of N heteroatoms on the noncovalent aromatic interactions at the molecular level.
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Affiliation(s)
- Jiaqi Zhou
- MOE Key Laboratory for Nonequilibrium Synthesis and Modulation of Condensed Matter, School of Physics, Xi'an Jiaotong University, Xi'an 710049, China
| | - Shaokui Jia
- MOE Key Laboratory for Nonequilibrium Synthesis and Modulation of Condensed Matter, School of Physics, Xi'an Jiaotong University, Xi'an 710049, China
| | - Xiaorui Xue
- MOE Key Laboratory for Nonequilibrium Synthesis and Modulation of Condensed Matter, School of Physics, Xi'an Jiaotong University, Xi'an 710049, China
| | - Anna D Skitnevskaya
- Laboratory of Quantum Chemistry, Irkutsk State University, Irkutsk 664003, Russia
| | - Enliang Wang
- Hefei National Laboratory for Physical Sciences at the Microscale and Department of Modern Physics, University of Science and Technology of China, Hefei 230026, China
| | - Xing Wang
- MOE Key Laboratory for Nonequilibrium Synthesis and Modulation of Condensed Matter, School of Physics, Xi'an Jiaotong University, Xi'an 710049, China
| | - Xintai Hao
- MOE Key Laboratory for Nonequilibrium Synthesis and Modulation of Condensed Matter, School of Physics, Xi'an Jiaotong University, Xi'an 710049, China
| | - Qingrui Zeng
- MOE Key Laboratory for Nonequilibrium Synthesis and Modulation of Condensed Matter, School of Physics, Xi'an Jiaotong University, Xi'an 710049, China
| | - Alexander I Kuleff
- Theoretische Chemie, Physikalisch-Chemisches Institut, Universität Heidelberg, Heidelberg 69120, Germany
| | - Alexander Dorn
- Max-Planck-Institut für Kernphysik, Heidelberg 69117, Germany
| | - Xueguang Ren
- MOE Key Laboratory for Nonequilibrium Synthesis and Modulation of Condensed Matter, School of Physics, Xi'an Jiaotong University, Xi'an 710049, China
- Max-Planck-Institut für Kernphysik, Heidelberg 69117, Germany
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3
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Andrade B, Chen A, Gilson MK. Host-guest systems for the SAMPL9 blinded prediction challenge: phenothiazine as a privileged scaffold for binding to cyclodextrins. Phys Chem Chem Phys 2024; 26:2035-2043. [PMID: 38126539 PMCID: PMC10832227 DOI: 10.1039/d3cp05347d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2023]
Abstract
Model systems are widely used in biology and chemistry to gain insight into more complex systems. In the field of computational chemistry, researchers use host-guest systems, relatively simple exemplars of noncovalent binding, to train and test the computational methods used in drug discovery. Indeed, host-guest systems have been developed to support the community-wide blinded SAMPL prediction challenges for over a decade. While seeking new host-guest systems for the recent SAMPL9 binding prediction challenge, which is the focus of the present PCCP Themed Collection, we identified phenothiazine as a privileged scaffold for guests of β cyclodextrin (βCD) and its derivatives. Building on this observation, we used calorimetry and NMR spectroscopy to characterize the noncovalent association of native βCD and three methylated derivatives of βCD with five phenothiazine drugs. The strongest association observed, that of thioridazine and one of the methyl derivatives, exceeds the well-known high affinity of rimantidine with βCD. Intriguingly, however, methylation of βCD at the 3 position abolished detectible binding for all of the drugs studied. The dataset has a clear pattern of entropy-enthalpy compensation. The NMR data show that all of the drugs position at least one aromatic proton at the secondary face of the CD, and most also show evidence of deep penetration of the binding site. The results of this study were used in the SAMPL9 blinded binding affinity-prediction challenge, which are detailed in accompanying papers of the present Themed Collection. These data also open the phenothiazines and, potentially, chemically similar drugs, such as the tricyclic antidepressants, as relatively potent binders of βCD, setting the stage for future SAMPL challenge datasets and for possible applications as drug reversal agents.
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Affiliation(s)
- Brenda Andrade
- Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, 9255 Pharmacy Lane, La Jolla, CA 92093, USA.
| | - Ashley Chen
- Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, 9255 Pharmacy Lane, La Jolla, CA 92093, USA.
| | - Michael K Gilson
- Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, 9255 Pharmacy Lane, La Jolla, CA 92093, USA.
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4
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Wang Z, Li Y, Sun M. The effect of weak π-π interactions on single-molecule electron transport properties of the tetraphenylethene molecule and its derivatives: a first-principles study. Phys Chem Chem Phys 2024; 26:1067-1076. [PMID: 38095244 DOI: 10.1039/d3cp04593e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2024]
Abstract
Intramolecular π-π interactions are a significant research focus in fields such as chemistry, biology, and materials science. Different configurations of benzene-benzene moieties within a molecule can affect the magnitude of their π-π interactions, consequently influencing the electronic transport capabilities of the molecule. In this study, we designed three π-conjugated molecules, TPEM, TPEEM, and TEEPM, based on tetraphenylethene (TPE). These three molecules exhibit three distinct π-conjugated structures: linear cis-π-conjugation, linear trans-π-conjugation, and cross-π-conjugation. Thereinto, TPEM and TPEEM molecules share the same TPE core, with identical π-π interaction distances, while the TEEPM molecule has acetylene groups between the TPE units, thereby increasing the π-π interaction distances between the benzene moieties. Using density functional theory calculations combined with non-equilibrium Green's function (DFT+NEGF), our results reveal that the conductance order of different π-conjugated structures in TPEM and TPEEM molecules is as follows: cis > cross ≈ trans. Through analysis of transmission spectra, transmission pathways, and the innermost π orbitals, we find that in TPEM and TPEEM molecules, the cis- and cross-π-conjugated structures exhibit π-π interactions between benzene moieties and provide special through-space electron transport pathways, enhancing their electronic transport capabilities in coordination with the bonded molecular framework, whereas their trans-conjugated structures only allow electron transport along the molecular backbone. In contrast, in TEEPM molecule, due to the absence of π-π interactions, the conductance of different π-conjugated structures is primarily determined by the molecular backbone and follows the order: trans > cis > cross. These findings provide a theoretical basis for designing single-molecule electronic devices with multiple electron channels based on intramolecular π-π interactions.
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Affiliation(s)
- Zhiye Wang
- Department of Materials and Metallurgy, Wuhan University of Science and Technology, 430081, Wuhan, China.
| | - Yunchuan Li
- Department of Materials and Metallurgy, Wuhan University of Science and Technology, 430081, Wuhan, China.
| | - Mingjun Sun
- Department of Materials and Metallurgy, Wuhan University of Science and Technology, 430081, Wuhan, China.
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5
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Tobajas-Curiel G, Sun Q, Sanders JKM, Ballester P, Hunter CA. Aromatic interactions with heterocycles in water. Chem Sci 2023; 14:11131-11140. [PMID: 37860651 PMCID: PMC10583712 DOI: 10.1039/d3sc03824f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Accepted: 09/24/2023] [Indexed: 10/21/2023] Open
Abstract
Conformationally well-defined supramolecular complexes that can be studied in different solvents provide a platform for separating and quantifying free energy contributions due to functional group interactions and desolvation. Here 1:1 complexes formed between four different calix[4]pyrrole receptors and eleven different pyridine N-oxide guests have been used to dissect the factors that govern aromatic interactions with heterocycles in water and in chloroform solution. 1H NMR spectroscopy shows that the three-dimensional structures of the complexes are fixed by four H-bonding interactions between the pyrrole donors at the bottom of the receptor and the N-oxide acceptor on the guest, locking the geometrical arrangement of interacting functional groups in the binding pocket at the other end of the receptor. An aromatic heterocycle on the guest makes two stacking interactions and two edge-to-face interactions with the side walls of the receptor. Chemical double mutant cycles were used to measure the free energy contribution of these four aromatic interactions to the overall stability of the complex. In chloroform, the aromatic interactions measured with pyridine, pyrimidine, furan, thiophene and thiazole are similar to the interactions with a phenyl group, but the effect of introducing a heteroatom depends on where it sits with respect to the aromatic side-walls of the cavity. A nitrogen lone pair directed into a π-face of the side-walls of the binding site leads to repulsive interactions of up to 8 kJ mol-1. In water, the heterocycle aromatic interactions are all significantly more favourable (by up to 12 kJ mol-1). For the non-polar heterocycles, furan and thiophene, the increase in interaction energy correlates directly with hydrophobicity, as measured by the free energy of transfer of the heterocycle from n-hexadecane into water (ΔG°(water-hex)). For the heterocycles with polar nitrogen H-bond acceptors, water can access cracks in the walls of the receptor binding site to solvate the edges of the heterocycles without significantly affecting the geometry of the aromatic interactions, and these nitrogen-water H-bonds stabilise the complexes by about 15 kJ mol-1. The results highlight the complexity of the solvation processes that govern molecular recognition in water.
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Affiliation(s)
| | - Qingqing Sun
- Institute of Chemical Research of Catalonia (ICIQ), Barcelona Institute of Science and Technology (BIST) Av. Països Catalans, 16 43007 Tarragona Spain
- Yangzhou University, School of Chemistry and Chemical Engineering Yangzhou 225002 Jiangsu China
| | - Jeremy K M Sanders
- Yusuf Hamied Department of Chemistry, University of Cambridge Cambridge CB2 1EW UK
| | - Pablo Ballester
- Institute of Chemical Research of Catalonia (ICIQ), Barcelona Institute of Science and Technology (BIST) Av. Països Catalans, 16 43007 Tarragona Spain
- ICREA Passeig Lluís Companys 23 08010 Barcelona Spain
| | - Christopher A Hunter
- Yusuf Hamied Department of Chemistry, University of Cambridge Cambridge CB2 1EW UK
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6
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Dörrenhaus R, Wagner PK, Kath-Schorr S. Two are not enough: synthetic strategies and applications of unnatural base pairs. Biol Chem 2023; 404:883-896. [PMID: 37354104 DOI: 10.1515/hsz-2023-0169] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2023] [Accepted: 06/05/2023] [Indexed: 06/26/2023]
Abstract
Nucleic acid chemistry is a rapidly evolving field, and the need for novel nucleotide modifications and artificial nucleotide building blocks for diagnostic and therapeutic use, material science or for studying cellular processes continues unabated. This review focusses on the development and application of unnatural base pairs as part of an expanded genetic alphabet. Not only recent developments in "nature-like" artificial base pairs are presented, but also current synthetic methods to get access to C-glycosidic nucleotides. Wide-ranging viability in synthesis is a prerequisite for the successful use of unnatural base pairs in a broader spectrum and will be discussed.
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7
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Togo T, Tram L, Denton LG, ElHilali-Pollard X, Gu J, Jiang J, Liu C, Zhao Y, Zhao Y, Zheng Y, Zheng Y, Yang J, Fan P, Arkin MR, Härmä H, Sun D, Canan SS, Wheeler SE, Renslo AR. Systematic Study of Heteroarene Stacking Using a Congeneric Set of Molecular Glues for Procaspase-6. J Med Chem 2023; 66:9784-9796. [PMID: 37406165 PMCID: PMC10388292 DOI: 10.1021/acs.jmedchem.3c00590] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2023] [Indexed: 07/07/2023]
Abstract
Heteroaromatic stacking interactions are important in drug binding, supramolecular chemistry, and materials science, making protein-ligand model systems of these interactions of considerable interest. Here we studied 30 congeneric ligands that each present a distinct heteroarene for stacking between tyrosine residues at the dimer interface of procaspase-6. Complex X-ray crystal structures of 10 analogs showed that stacking geometries were well conserved, while high-accuracy computations showed that heteroarene stacking energy was well correlated with predicted overall ligand binding energies. Empirically determined KD values in this system thus provide a useful measure of heteroarene stacking with tyrosine. Stacking energies are discussed in the context of torsional strain, the number and positioning of heteroatoms, tautomeric state, and coaxial orientation of heteroarene in the stack. Overall, this study provides an extensive data set of empirical and high-level computed binding energies in a versatile new protein-ligand system amenable to studies of other intermolecular interactions.
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Affiliation(s)
- Takaya Togo
- Department
of Pharmaceutical Chemistry, University
of California, 600 16th Street, San Francisco, California 94143, United States
| | - Linh Tram
- Department
of Pharmaceutical Chemistry, University
of California, 600 16th Street, San Francisco, California 94143, United States
| | - Laura G. Denton
- Department
of Chemistry, University of Georgia, Athens, Georgia 30602, United States
| | - Xochina ElHilali-Pollard
- Department
of Pharmaceutical Chemistry, University
of California, 600 16th Street, San Francisco, California 94143, United States
| | - Jun Gu
- Departments
of Chemistry and Biology, Viva Biotech, Pu Dong New Area, 201203 Shanghai, China
| | - Jinglei Jiang
- Departments
of Chemistry and Biology, Viva Biotech, Pu Dong New Area, 201203 Shanghai, China
| | - Chenglei Liu
- Departments
of Chemistry and Biology, Viva Biotech, Pu Dong New Area, 201203 Shanghai, China
| | - Yan Zhao
- Departments
of Chemistry and Biology, Viva Biotech, Pu Dong New Area, 201203 Shanghai, China
| | - Yanlong Zhao
- Departments
of Chemistry and Biology, Viva Biotech, Pu Dong New Area, 201203 Shanghai, China
| | - Yinzhe Zheng
- Departments
of Chemistry and Biology, Viva Biotech, Pu Dong New Area, 201203 Shanghai, China
| | - Yunping Zheng
- Departments
of Chemistry and Biology, Viva Biotech, Pu Dong New Area, 201203 Shanghai, China
| | - Jingjing Yang
- Departments
of Chemistry and Biology, Viva Biotech, Pu Dong New Area, 201203 Shanghai, China
| | - Panpan Fan
- Departments
of Chemistry and Biology, Viva Biotech, Pu Dong New Area, 201203 Shanghai, China
| | - Michelle R. Arkin
- Department
of Pharmaceutical Chemistry, University
of California, 600 16th Street, San Francisco, California 94143, United States
| | - Harri Härmä
- Department
of Chemistry, University of Turku, 20500 Turku, Finland
| | - Deqian Sun
- Departments
of Chemistry and Biology, Viva Biotech, Pu Dong New Area, 201203 Shanghai, China
| | - Stacie S. Canan
- Departments of Chemistry
and Structural Biology, Elgia Therapeutics, La Jolla, California 92037, United States
| | - Steven E. Wheeler
- Department
of Chemistry, University of Georgia, Athens, Georgia 30602, United States
| | - Adam R. Renslo
- Department
of Pharmaceutical Chemistry, University
of California, 600 16th Street, San Francisco, California 94143, United States
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8
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Tobajas-Curiel G, Sun Q, Sanders JKM, Ballester P, Hunter CA. Substituent effects on aromatic interactions in water. Chem Sci 2023; 14:6226-6236. [PMID: 37325132 PMCID: PMC10266462 DOI: 10.1039/d3sc01027a] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2023] [Accepted: 04/28/2023] [Indexed: 06/17/2023] Open
Abstract
Molecular recognition in water involves contributions due to polar functional group interactions, partial desolvation of polar and non-polar surfaces and changes in conformational flexibility, presenting a challenge for rational design and interpretation of supramolecular behaviour. Conformationally well-defined supramolecular complexes that can be studied in both water and non-polar solvents provide a platform for disentangling these contributions. Here 1 : 1 complexes formed between four different calix[4]pyrrole receptors and thirteen different pyridine N-oxide guests have been used to dissect the factors that govern substituent effects on aromatic interactions in water. H-bonding interactions between the receptor pyrrole donors and the guest N-oxide acceptor at one end of the complex lock the geometrical arrangement of a cluster of aromatic interactions at the other end of the complex, so that a phenyl group on the guest makes two edge-to-face and two stacking interactions with the four aromatic side-walls of the receptor. The thermodynamic contribution of these aromatic interactions to the overall stability of the complex was quantified by chemical double mutant cycles using isothermal titration calorimetry and 1H NMR competition experiments. Aromatic interactions between the receptor and a phenyl group on the guest stabilise the complex by a factor of 1000, and addition of substituents to the guest phenyl group further stabilises the complex by an additional factor of up to 1000. When a nitro substituent is present on the guest phenyl group, the complex has a sub-picomolar dissociation constant (370 fM). The remarkable substituent effects observed in water for these complexes can be rationalised by comparison with the magnitude of the corresponding substituent effects measured in chloroform. In chloroform, the double mutant cycle free energy measurements of the aromatic interactions correlate well with the substituent Hammett parameters. Electron-withdrawing substituents increase the strength of the interactions by a factor of up to 20, highlighting the role of electrostatics in stabilising both the edge-to-face and stacking interactions. The enhanced substituent effects observed in water are due to entropic contributions associated with the desolvation of hydrophobic surfaces on the substituents. The flexible alkyl chains that line the open end of the binding site assist the desolvation of the non-polar π-surfaces of polar substituents, like nitro, but at the same time allow water to interact with the polar H-bond acceptor sites on the substituent. This flexibility allows polar substituents to maximise non-polar interactions with the receptor and polar interactions with the solvent, leading to remarkably high binding affinities.
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Affiliation(s)
| | - Qingqing Sun
- Institute of Chemical Research of Catalonia (ICIQ), Barcelona Institute of Science and Technology (BIST) Av. Països Catalans, 16, 43007 Tarragona Spain
- Yangzhou University, School of Chemistry and Chemical Engineering Yangzhou 225002 Jiangsu China
| | - Jeremy K M Sanders
- Yusuf Hamied Department of Chemistry, University of Cambridge Cambridge CB2 1EW UK
| | - Pablo Ballester
- Institute of Chemical Research of Catalonia (ICIQ), Barcelona Institute of Science and Technology (BIST) Av. Països Catalans, 16, 43007 Tarragona Spain
- ICREA Passeig Lluís Companys 23 08010 Barcelona Spain
| | - Christopher A Hunter
- Yusuf Hamied Department of Chemistry, University of Cambridge Cambridge CB2 1EW UK
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9
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Liu M, Han X, Chen H, Peng Q, Huang H. A molecular descriptor of intramolecular noncovalent interaction for regulating optoelectronic properties of organic semiconductors. Nat Commun 2023; 14:2500. [PMID: 37127693 PMCID: PMC10151346 DOI: 10.1038/s41467-023-38078-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2022] [Accepted: 04/11/2023] [Indexed: 05/03/2023] Open
Abstract
In recent years, intramolecular noncovalent interaction has become an important means to modulate the optoelectronic performances of organic/polymeric semiconductors. However, it lacks a deep understanding and a direct quantitative relationship among the molecular geometric structure, strength of noncovalent interaction, and optoelectronic properties in organic/polymeric semiconductors. Herein, upon systematical theoretical calculations on 56 molecules with and without noncovalent interactions (X···Y, X = O, S, Se, Te; Y = C, F, O, S, Cl), we reveal the essence of the interactions and the dependence of its strength on the molecular geometry. Importantly, a descriptor S is established as a function of several basic geometric parameters to well characterize the noncovalent interaction energy, which exhibits a good inverse correlation with the reorganization energies of the photo-excited states or electron-pumped charged states in organic/polymeric semiconductors. In particular, the experimental 1H, 77Se, and 125Te NMR, the optical absorption and emission spectra, and single crystal structures of eight compounds fully confirm the theoretical predictions. This work provides a simple descriptor to characterize the strength of noncovalent intramolecular interactions, which is significant for molecular design and property prediction.
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Affiliation(s)
- Meihui Liu
- School of Chemical Sciences, University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
| | - Xiao Han
- College of Materials Science and Opto-Electronic Technology & CAS Center for Excellence in Topological Quantum Computation & Key Laboratory of Vacuum Physics, University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
| | - Hao Chen
- College of Materials Science and Opto-Electronic Technology & CAS Center for Excellence in Topological Quantum Computation & Key Laboratory of Vacuum Physics, University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
| | - Qian Peng
- School of Chemical Sciences, University of Chinese Academy of Sciences, Beijing, 100049, P. R. China.
| | - Hui Huang
- College of Materials Science and Opto-Electronic Technology & CAS Center for Excellence in Topological Quantum Computation & Key Laboratory of Vacuum Physics, University of Chinese Academy of Sciences, Beijing, 100049, P. R. China.
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10
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Janicki TD, Van Vleet MJ, Schmidt JR. Development and Implementation of Atomically Anisotropic First-Principles Force Fields: A Benzene Case Study. J Phys Chem A 2023; 127:1736-1749. [PMID: 36780209 DOI: 10.1021/acs.jpca.2c07244] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/14/2023]
Abstract
π-interactions are an important motif in chemical and biochemical systems. However, due to their anisotropic electron densities and complex balance of intermolecular interactions, aromatic molecules represent an ongoing challenge for accurate and transferable force field development. Historically, ab initio force fields for aromatics have not exhibited good accuracy with respect to bulk properties or have only been used to study gas-phase dimers. Using benzene as a proof of concept, herein we show how our own ab initio MASTIFF force field incorporates an atomically anisotropic description of intermolecular interactions to yield an accurate and robust model for aromatic interactions irrespective of phase. Compared to existing models, the MASTIFF benzene force field not only is accurate for liquid phase properties but also offers transferability to the gas and solid phases. Additionally, we introduce a computationally efficient OpenMM plugin which enables customizable anisotropic intermolecular functional forms and which can be generically used in any MD simulation where a model for nonspherical atomic features is required. Overall, our results demonstrate the importance of atomic-level anisotropy in enabling next-generation ab initio force field development.
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Affiliation(s)
- Tesia D Janicki
- Department of Chemistry, University of Wisconsin─Madison, 1101 University Avenue, Madison, Wisconsin 53706, United States
| | - Mary J Van Vleet
- Department of Chemistry and Biochemistry, Spelman College, 350 Spelman Ln SW, Atlanta, Georgia 30314, United States
| | - J R Schmidt
- Department of Chemistry, University of Wisconsin─Madison, 1101 University Avenue, Madison, Wisconsin 53706, United States
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11
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Engineering synergistic effects of immobilized cooperative catalysts. Coord Chem Rev 2023. [DOI: 10.1016/j.ccr.2022.214863] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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12
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Dowarah J, Marak BN, Sran BS, Shah PK, Shukla PK, Singh VP. Synthesis of a Pyridone-Based Phthalimide Fleximer and Its Characterization and Supramolecular Property Evaluation. ACS OMEGA 2022; 7:24485-24497. [PMID: 35874266 PMCID: PMC9301638 DOI: 10.1021/acsomega.2c02095] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
In this study, a novel pyridone-based phthalimide fleximer, that is, ethyl 5-cyano-6-(3-(1,3-dioxoisoindolin-2-yl)propoxy)-4-(3-methoxyphenyl)-2-methylnicotinate, was synthesized, and its structure was established by the single-crystal X-ray diffraction method. The supramolecular self-assembly of the titled compound through noncovalent interactions was then investigated thoroughly. The titled compound crystallized with two symmetry-independent molecules (A and B, Z' = 2). In agreement with experimental observations, our density functional theory calculations also showed that the titled compound has a flexible motif and can occur in various conformations, including molecules A and B. The investigation of the supramolecular framework revealed that the molecules are notably bound by the nonclassical C-H···O and C-H···N hydrogen bonds and C-H···π interactions. Hirshfeld surface analysis was carried out to quantify the various intermolecular interactions. The dual anti-inflammatory activity of the tilted compound was also explored by molecular docking in the active sites of 5-LOX and COX-2 receptors, which revealed good binding affinities of -9.0 and -8.6 kcal/mol, respectively.
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Affiliation(s)
- Jayanta Dowarah
- Department
of Chemistry, School of Physical Sciences, Mizoram University, Aizawl 796004, Mizoram, India
| | - Brilliant N. Marak
- Department
of Chemistry, School of Physical Sciences, Mizoram University, Aizawl 796004, Mizoram, India
| | - Balkaran Singh Sran
- Department
of Chemistry, Guru Nanak Dev University, Amritsar, Punjab 143005, India
| | | | | | - Ved Prakash Singh
- Department
of Industrial Chemistry, School of Physical Sciences, Mizoram University, Aizawl 796004, Mizoram, India
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13
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Zeng L, Shi W, Wang H, Cheng X, Chen T, Wang LL, Lan J, Sun W, Liu M, Zhang X, Zhang J, Chen J. Codelivery of π-π Stacked Dual Anticancer Drugs Based on Aloe-Derived Nanovesicles for Breast Cancer Therapy. ACS APPLIED MATERIALS & INTERFACES 2022; 14:27686-27702. [PMID: 35675505 DOI: 10.1021/acsami.2c06546] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
To overcome the low efficacy of conventional monotherapeutic approaches that use a single drug, functional nanocarriers loaded with an amalgamation of anticancer drugs have been promising in cancer therapy. Herein, aloe-derived nanovesicles (gADNVs) are modified with an active integrin-targeted peptide (Arg-Gly-Asp, RGD) by the postinsertion technique to deliver indocyanine green (ICG) and doxorubicin (DOX) for efficient breast cancer therapy. We presented for the first time that the π-π stacking interaction can turn the "competitive" relationship of ICG and DOX inside gADNVs into a "cooperative" relationship and enhance their loading efficiency. The dual-drug codelivery nanosystem, denoted as DIARs, was well stable and leakproof, exhibiting high tumor-targeting capability both in vitro and in vivo. Meanwhile, this nanosystem showed significant inhibition of cell growth and migration and induced cell apoptosis with the combination of phototherapy and chemotherapy. Intravenous administration of DIARs exhibited high therapeutic efficacy in a 4T1 tumor-bearing mouse model and exhibited no obvious damage to other organs. Overall, our DIAR nanosystem constitutively integrated the natural and economical gADNVs, π-π stacking interaction based on efficient drug loading, and tumor-targeted RGD modification to achieve an effective combination therapy for breast cancer.
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Affiliation(s)
- Lupeng Zeng
- The School of Pharmacy, Fujian Medical University, Fuzhou, Fujian 350122, P. R. China
- Fujian Key Laboratory of Drug Target Discovery and Structural and Functional Research, The School of Pharmacy, Fujian Medical University, Fuzhou, Fujian 350122, P. R. China
| | - Wanhua Shi
- The School of Pharmacy, Fujian Medical University, Fuzhou, Fujian 350122, P. R. China
- Fujian Key Laboratory of Drug Target Discovery and Structural and Functional Research, The School of Pharmacy, Fujian Medical University, Fuzhou, Fujian 350122, P. R. China
| | - Huaying Wang
- The School of Pharmacy, Fujian Medical University, Fuzhou, Fujian 350122, P. R. China
- Fujian Key Laboratory of Drug Target Discovery and Structural and Functional Research, The School of Pharmacy, Fujian Medical University, Fuzhou, Fujian 350122, P. R. China
| | - Xin Cheng
- The School of Pharmacy, Fujian Medical University, Fuzhou, Fujian 350122, P. R. China
- Fujian Key Laboratory of Drug Target Discovery and Structural and Functional Research, The School of Pharmacy, Fujian Medical University, Fuzhou, Fujian 350122, P. R. China
| | - Tingting Chen
- The School of Pharmacy, Fujian Medical University, Fuzhou, Fujian 350122, P. R. China
- Fujian Key Laboratory of Drug Target Discovery and Structural and Functional Research, The School of Pharmacy, Fujian Medical University, Fuzhou, Fujian 350122, P. R. China
| | - Liang Liang Wang
- The School of Pharmacy, Fujian Medical University, Fuzhou, Fujian 350122, P. R. China
- Fujian Key Laboratory of Drug Target Discovery and Structural and Functional Research, The School of Pharmacy, Fujian Medical University, Fuzhou, Fujian 350122, P. R. China
| | - Jianming Lan
- The School of Pharmacy, Fujian Medical University, Fuzhou, Fujian 350122, P. R. China
- Fujian Key Laboratory of Drug Target Discovery and Structural and Functional Research, The School of Pharmacy, Fujian Medical University, Fuzhou, Fujian 350122, P. R. China
| | - Weiming Sun
- The School of Pharmacy, Fujian Medical University, Fuzhou, Fujian 350122, P. R. China
- Fujian Key Laboratory of Drug Target Discovery and Structural and Functional Research, The School of Pharmacy, Fujian Medical University, Fuzhou, Fujian 350122, P. R. China
| | - Meicen Liu
- Longyan First Affiliated Hospital of Fujian Medical University, Fujian Medical University, Longyan, Fujian 364000, P. R. China
| | - Xi Zhang
- The School of Pharmacy, Fujian Medical University, Fuzhou, Fujian 350122, P. R. China
- Fujian Key Laboratory of Drug Target Discovery and Structural and Functional Research, The School of Pharmacy, Fujian Medical University, Fuzhou, Fujian 350122, P. R. China
| | - Jing Zhang
- Department of Chemical Biology, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, P. R. China
| | - Jinghua Chen
- The School of Pharmacy, Fujian Medical University, Fuzhou, Fujian 350122, P. R. China
- Fujian Key Laboratory of Drug Target Discovery and Structural and Functional Research, The School of Pharmacy, Fujian Medical University, Fuzhou, Fujian 350122, P. R. China
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14
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Ferretti A, Prampolini G. Complexes of Alkaline and Ammonium Cations with Dopamine and Eumelanin Precursors: Dissecting the Role of Noncovalent Cation-π and Cation-Lone Pair (σ-Type) Interactions. J Phys Chem A 2022; 126:2330-2341. [PMID: 35394779 DOI: 10.1021/acs.jpca.2c00333] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Cation-π interactions and their possible competition with other noncovalent interactions (NCI) might play a key role in both dopamine- and eumelanin-based bioinspired materials. In this contribution, to unravel the delicate interplay between cation-π interactions and other possible competing forces, the configurational space of noncovalent complexes formed by dopamine or eumelanin precursors (o-benzoquinone, DHI and a semiquinone dimer) and three different cations (Na+, K+, and NH4+) is sampled by means of accurate ab initio calculations. To this end, we resort to the mp2mod method, recently validated by us for benzene-, phenol-, and catechol-cation complexes, whose computational convenience allows for an extensive exploration of the cation-molecule interaction energy surface, by sampling a total of more than 104 arrangements. The mp2mod interaction energy landscapes reveal that, besides the expected cation-π driven arrangements, for all considered molecule-cation pairs the most stable complexes are found when the cation lies within the plane containing the six-membered ring, thus maximizing the σ-type interaction with the oxygen's lone pairs. Due to the loss of aromaticity, the σ-type/cation-π strength ratio is remarkably large in o-benzoquinone, where cation-π complexes seem unlikely to be formed. The above features are shared among all considered cations but are significantly larger when considering the smaller Na+. Besides delivering a deeper insight onto the NCI network established by the considered precursors in the presence of ions, the present results can serve as a reference database to validate or refine lower level methods, as, for instance, the force fields employed in classical simulations.
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Affiliation(s)
- Alessandro Ferretti
- Istituto di Chimica dei Composti OrganoMetallici (ICCOM-CNR), Area della Ricerca, via G. Moruzzi 1, I-56124 Pisa, Italy
| | - Giacomo Prampolini
- Istituto di Chimica dei Composti OrganoMetallici (ICCOM-CNR), Area della Ricerca, via G. Moruzzi 1, I-56124 Pisa, Italy
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15
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Prasad VK, Otero-de-la-Roza A, DiLabio GA. Fast and Accurate Quantum Mechanical Modeling of Large Molecular Systems Using Small Basis Set Hartree-Fock Methods Corrected with Atom-Centered Potentials. J Chem Theory Comput 2022; 18:2208-2232. [PMID: 35313106 DOI: 10.1021/acs.jctc.1c01128] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
There has been significant interest in developing fast and accurate quantum mechanical methods for modeling large molecular systems. In this work, by utilizing a machine learning regression technique, we have developed new low-cost quantum mechanical approaches to model large molecular systems. The developed approaches rely on using one-electron Gaussian-type functions called atom-centered potentials (ACPs) to correct for the basis set incompleteness and the lack of correlation effects in the underlying minimal or small basis set Hartree-Fock (HF) methods. In particular, ACPs are proposed for ten elements common in organic and bioorganic chemistry (H, B, C, N, O, F, Si, P, S, and Cl) and four different base methods: two minimal basis sets (MINIs and MINIX) plus a double-ζ basis set (6-31G*) in combination with dispersion-corrected HF (HF-D3/MINIs, HF-D3/MINIX, HF-D3/6-31G*) and the HF-3c method. The new ACPs are trained on a very large set (73 832 data points) of noncovalent properties (interaction and conformational energies) and validated additionally on a set of 32 048 data points. All reference data are of complete basis set coupled-cluster quality, mostly CCSD(T)/CBS. The proposed ACP-corrected methods are shown to give errors in the tenths of a kcal/mol range for noncovalent interaction energies and up to 2 kcal/mol for molecular conformational energies. More importantly, the average errors are similar in the training and validation sets, confirming the robustness and applicability of these methods outside the boundaries of the training set. In addition, the performance of the new ACP-corrected methods is similar to complete basis set density functional theory (DFT) but at a cost that is orders of magnitude lower, and the proposed ACPs can be used in any computational chemistry program that supports effective-core potentials without modification. It is also shown that ACPs improve the description of covalent and noncovalent bond geometries of the underlying methods and that the improvement brought about by the application of the ACPs is directly related to the number of atoms to which they are applied, allowing the treatment of systems containing some atoms for which ACPs are not available. Overall, the ACP-corrected methods proposed in this work constitute an alternative accurate, economical, and reliable quantum mechanical approach to describe the geometries, interaction energies, and conformational energies of systems with hundreds to thousands of atoms.
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Affiliation(s)
- Viki Kumar Prasad
- Department of Chemistry, University of British Columbia, Okanagan, 3247 University Way, Kelowna, British Columbia, Canada V1V 1V7
| | - Alberto Otero-de-la-Roza
- MALTA Consolider Team, Departamento de Química Física y Analítica, Facultad de Química, Universidad de Oviedo, E-33006 Oviedo, Spain
| | - Gino A DiLabio
- Department of Chemistry, University of British Columbia, Okanagan, 3247 University Way, Kelowna, British Columbia, Canada V1V 1V7
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16
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Crystal structures of rare earth cyamelurates obtained under kinetic and thermodynamic controls. Struct Chem 2022. [DOI: 10.1007/s11224-022-01880-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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17
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Kato SI, Naito Y, Moriguchi R, Kitamura C, Matsumoto T, Yoshihara T, Ishi-I T, Nagata Y, Takeshita H, Yoshizawa K, Shiota Y, Suzuki K. Augmented Self-Association by Electrostatic Forces in Thienopyrrole-Fused Thiadiazoles that Contain an Ester instead of an Ether Linker. Chem Asian J 2021; 17:e202101341. [PMID: 34939334 DOI: 10.1002/asia.202101341] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2021] [Revised: 12/21/2021] [Indexed: 11/11/2022]
Abstract
During the self-assembly of π-conjugated molecules, linkers and substituents can potentially add supportive noncovalent intermolecular interactions to π-stacking interactions. Here, we report the self-assembly behavior of thienopyrrole-fused thiadiazole (TPT) fluorescent dyes that possess ester or ether linkers and dodecyloxy side chains in solution and the condensed phase. A comparison of the self-association behavior of the ester- and ether-bridged compounds in solution using detailed UV-vis, fluorescence, and NMR spectroscopic studies revealed that the subtle replacement of the ether linkers by ester linkers leads to a distinct increase in the association constant (ca. 3-4 fold) and the enthalpic contribution (ca. 3 kcal mol-1). Theoretical calculations suggest that the ester linkers, which are in close proximity to one another due to the π-stacking interactions, induce attractive electrostatic forces and augment self-association. The self-assembly of TPT dyes into well-defined 1D clusters with high aspect ratios was observed, and their morphologies and crystallinity were investigated using SEM and X-ray diffraction analyses. TPTs with ester linkers exhibit a columnar liquid crystalline mesophase in the condensed phase.
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Affiliation(s)
- Shin-Ichiro Kato
- The University of Shiga Prefecture, Department of Materials Science, 2500 Hassaka-cho, 522-8533, Hikone, JAPAN
| | - Yukako Naito
- The University of Shiga Prefecture: Shiga Kenritsu Daigaku, Materials Science, JAPAN
| | - Ryo Moriguchi
- The University of Shiga Prefecture: Shiga Kenritsu Daigaku, Materials Science, JAPAN
| | - Chitoshi Kitamura
- The University of Shiga Prefecture: Shiga Kenritsu Daigaku, Materials Science, JAPAN
| | - Taisuke Matsumoto
- Kyushu University: Kyushu Daigaku, Institute for Materials Chemistry and Engineering, JAPAN
| | - Toshitada Yoshihara
- Gunma University Faculty of Engineering Graduate School of Engineering: Gunma Daigaku Rikogakubu Daigakuin Riko Gakufu, Molecular Science, JAPAN
| | - Tsutomu Ishi-I
- National Institute of Technology Kurume College, Biochemistry and Applied Chemistry, JAPAN
| | - Yuka Nagata
- The University of Shiga Prefecture: Shiga Kenritsu Daigaku, Materials Science, JAPAN
| | - Hiroki Takeshita
- The University of Shiga Prefecture: Shiga Kenritsu Daigaku, Materials Science, JAPAN
| | - Kazunari Yoshizawa
- Kyushu University: Kyushu Daigaku, Institute of Materials Chemistry and Engineering, JAPAN
| | - Yoshihito Shiota
- Kyushu University: Kyushu Daigaku, Institute of Materials Chemistry and Engineering, JAPAN
| | - Kazumasa Suzuki
- The University of Shiga Prefecture: Shiga Kenritsu Daigaku, Materials Science, JAPAN
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18
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Arisawa M, Yoshida M, Fukumoto K, Sawato T, Yamaguchi M, Matsubara M, Kanie K. Three‐state Structural Switching and Selective Molecular Interactions of Cylindrical Concentric Monodomain Liquid Crystal Elastomer. ChemistrySelect 2021. [DOI: 10.1002/slct.202103490] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Mieko Arisawa
- Department of Organic Chemistry Graduate School of Pharmaceutical Sciences Tohoku University, Aoba Sendai 980-8578 Japan
- Department of Bioscience and Biotechnology Graduate School of Bioresource and Bioenviromental Sciences Kyushu University Fukuoka 819-0395 Japan
| | - Miyu Yoshida
- Department of Organic Chemistry Graduate School of Pharmaceutical Sciences Tohoku University, Aoba Sendai 980-8578 Japan
| | - Kohei Fukumoto
- Department of Organic Chemistry Graduate School of Pharmaceutical Sciences Tohoku University, Aoba Sendai 980-8578 Japan
| | - Tsukasa Sawato
- Department of Organic Chemistry Graduate School of Pharmaceutical Sciences Tohoku University, Aoba Sendai 980-8578 Japan
| | - Masahiko Yamaguchi
- Department of Organic Chemistry Graduate School of Pharmaceutical Sciences Tohoku University, Aoba Sendai 980-8578 Japan
| | - Masaki Matsubara
- Institute of Multidisciplinary Research for Advanced Materials Tohoku University, Aoba Sendai 980-8577 Japan
| | - Kiyoshi Kanie
- Institute of Multidisciplinary Research for Advanced Materials Tohoku University, Aoba Sendai 980-8577 Japan
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19
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Bravin C, Piękoś JA, Licini G, Hunter CA, Zonta C. Dissection of the Polar and Non‐Polar Contributions to Aromatic Stacking Interactions in Solution. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202110809] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Carlo Bravin
- Dipartimento di Scienze Chimiche Università degli Studi di Padova via Marzolo 1 35131 Padova Italy
- Yusuf Hamied Department of Chemistry University of Cambridge Lensfield Road Cambridge CB2 1EW UK
| | - Justyna A. Piękoś
- Dipartimento di Scienze Chimiche Università degli Studi di Padova via Marzolo 1 35131 Padova Italy
- Yusuf Hamied Department of Chemistry University of Cambridge Lensfield Road Cambridge CB2 1EW UK
| | - Giulia Licini
- Dipartimento di Scienze Chimiche Università degli Studi di Padova via Marzolo 1 35131 Padova Italy
| | - Christopher A. Hunter
- Yusuf Hamied Department of Chemistry University of Cambridge Lensfield Road Cambridge CB2 1EW UK
| | - Cristiano Zonta
- Dipartimento di Scienze Chimiche Università degli Studi di Padova via Marzolo 1 35131 Padova Italy
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20
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Bravin C, Piękoś JA, Licini G, Hunter CA, Zonta C. Dissection of the Polar and Non-Polar Contributions to Aromatic Stacking Interactions in Solution. Angew Chem Int Ed Engl 2021; 60:23871-23877. [PMID: 34472177 PMCID: PMC8596670 DOI: 10.1002/anie.202110809] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2021] [Indexed: 11/19/2022]
Abstract
Aromatic stacking interactions have been a matter of study and debate due to their crucial role in chemical and biological systems. The strong dependence on orientation and solvent together with the relatively small interaction energies have made evaluation and rationalization a challenge for experimental and theoretical chemists. We have used a supramolecular cage formed by two tris(pyridylmethyl)amines units to build chemical Double Mutant Cycles (DMC) for the experimental measurement of the free energies of π-stacking interactions. Extrapolating the substituent effects to remove the contribution due to electrostatic interactions reveals that there is a substantial contribution to the measured stacking interaction energies which is due to non-polar interactions (-3 to -6 kJ mol-1 ). The perfectly flat nature of the surface of an aromatic ring gives π-stacking an inherent advantage over non-polar interactions with alkyl groups and accounts for the wide-spread prevalence of stacking interactions in Nature.
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Affiliation(s)
- Carlo Bravin
- Dipartimento di Scienze ChimicheUniversità degli Studi di Padovavia Marzolo 135131PadovaItaly
- Yusuf Hamied Department of ChemistryUniversity of CambridgeLensfield RoadCambridgeCB2 1EWUK
| | - Justyna A. Piękoś
- Dipartimento di Scienze ChimicheUniversità degli Studi di Padovavia Marzolo 135131PadovaItaly
- Yusuf Hamied Department of ChemistryUniversity of CambridgeLensfield RoadCambridgeCB2 1EWUK
| | - Giulia Licini
- Dipartimento di Scienze ChimicheUniversità degli Studi di Padovavia Marzolo 135131PadovaItaly
| | - Christopher A. Hunter
- Yusuf Hamied Department of ChemistryUniversity of CambridgeLensfield RoadCambridgeCB2 1EWUK
| | - Cristiano Zonta
- Dipartimento di Scienze ChimicheUniversità degli Studi di Padovavia Marzolo 135131PadovaItaly
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21
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Lee GY, Hu E, Rheingold AL, Houk KN, Sletten EM. Arene-Perfluoroarene Interactions in Solution. J Org Chem 2021; 86:8425-8436. [PMID: 34077211 DOI: 10.1021/acs.joc.1c00921] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A systematic study of arene-perfluoroarene interactions in solution is presented. Using a combination of NMR titration experiments, X-ray crystallography, and computational analysis, we analyze the effects of fluorination, substituents, ring size, and solvation on the arene-perfluoroarene interaction. We find that fluorination, extension of the π systems, and enhancement of solvent polarity greatly stabilize the stacking energy up to 3 orders of magnitude (Ka = <1 to 6000 M-1), with the highest Ka achieved for the interaction of water-soluble variants of perfluoronaphthalene and anthracene in buffered D2O (pD = 12). Combining computational and experimental results, we conclude that this impressive binding energy is a result of enthalpically favorable electrostatic and dispersion interactions as well as the entropically driven hydrophobic effect. The enhanced understanding of arene-perfluoroarene interactions in aqueous solution sets the stage for the implementation of this abiotic intermolecular interaction in biology and medicine.
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Affiliation(s)
- Ga Young Lee
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - Elizabeth Hu
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - Arnold L Rheingold
- Department of Chemistry and Biochemistry, University of California, San Diego, California 92093, United States
| | - K N Houk
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - Ellen M Sletten
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
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22
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Li GB, Zhang Z, Liao LS, Pan RK, Liu SG. Anions effect construction of 1D naphthalene diimide supramolecular chains by π interactions and fluorescence detect iodide anion. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 254:119588. [PMID: 33743311 DOI: 10.1016/j.saa.2021.119588] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2020] [Revised: 01/26/2021] [Accepted: 02/02/2021] [Indexed: 06/12/2023]
Abstract
Five diverse 1D supramolecular chains, {[4-pmntd]}n(1), {H2[4-pmntd]•2Br-}n(2), {H2[4-pmntd]•2NO3-}n(3), {H2[4-pmntd]•2ClO4-}n(4), {H2[4-pmntd]•2BF4-}n(5), (where 4-pmntd was N,N'-bis (4-pyridylmethyl)naphthalene diimide) were synthesized and characterized by X-ray single-crystal structure analysis, IR spectroscopy, elemental analyses, thermogravimetric analyses, fluorescence detection. The anions effect construction of their 1D chain structural diversity through different π interactions. Compound 1 through the adjacent pyridine rings parallel π∙∙∙π interactions formed 1D linear chain structure. Compound 2 through Br- anion∙∙∙π interactions and halogenbond interactions formed 1D zigzag chain structure. Compound 3 through lone pair∙∙∙π interactions of naphthalene diimide and the adjacent carboxyl group formed 1D stairway chain structure. Compound 4 through ClO4- anion∙∙∙π interactions formed 1D ribbon chain structure. Compound 5 through parallel π∙∙∙π interactions of the adjacent naphthalene diimide planes and pyridine rings formed 1D ladder chain structure. The five compounds' fluorescence properties and thermal stabilities were investigated. The compound 2 solution could fluorescence detection for iodide anion via fluorescence quenching.
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Affiliation(s)
- Guo-Bi Li
- School of Chemistry and Chemical Engineering, Lingnan Normal University, Zhanjiang 524048, People's Republic of China
| | - Zhong Zhang
- College of Science, Northwest A&F University, Yangling 712100, Shaanxi, People's Republic of China.
| | - Lu-Sheng Liao
- Key Laboratory of Tropical Crop Products Processing of Ministry of Agriculture and Rural Affairs, Agricultural Products Processing Research Institute of Chinese Academy of Tropical Agricultural Sciences, Guangdong 524001, P. R. China, Hainan Key Laboratory of Natural Rubber Processing, Zhanjiang 524001, Guangdong, People's Republic of China.
| | - Rong-Kai Pan
- School of Chemistry and Chemical Engineering, Lingnan Normal University, Zhanjiang 524048, People's Republic of China
| | - Sheng-Gui Liu
- School of Chemistry and Chemical Engineering, Lingnan Normal University, Zhanjiang 524048, People's Republic of China.
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23
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Li P, Vik EC, Shimizu KD. N-Arylimide Molecular Balances: A Comprehensive Platform for Studying Aromatic Interactions in Solution. Acc Chem Res 2020; 53:2705-2714. [PMID: 33152232 DOI: 10.1021/acs.accounts.0c00519] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Noncovalent interactions of aromatic surfaces play a key role in many biological processes and in determining the properties and utility of synthetic materials, sensors, and catalysts. However, the study of aromatic interactions has been challenging because these interactions are usually very weak and their trends are modulated by many factors such as structural, electronic, steric, and solvent effects. Recently, N-arylimide molecular balances have emerged as highly versatile and effective platforms for studying aromatic interactions in solution. These molecular balances can accurately measure weak noncovalent interactions in solution via their influence on the folded-unfolded conformational equilibrium. The structure (i.e., size, shape, π-conjugation, and substitution) and nature (i.e., element, charge, and polarity) of the π-surfaces and interacting groups can be readily varied, enabling the study of a wide range of aromatic interactions. These include aromatic stacking, heterocyclic aromatic stacking, and alkyl-π, chalcogen-π, silver-π, halogen-π, substituent-π, and solvent-π interactions. The ability to measure a diverse array of aromatic interactions within a single model system provides a unique perspective and insights as the interaction energies, stability trends, and solvent effects for different types of interactions can be directly compared. Some broad conclusions that have emerged from this comprehensive analysis include: (1) The strongest aromatic interactions involve groups with positive charges such as pyridinium and metal ions which interact with the electrostatically negative π-face of the aromatic surface via cation-π or metal-π interactions. Attractive electrostatic interactions can also form between aromatic surfaces and groups with partial positive charges. (2) Electrostatic interactions involving aromatic surfaces can be switched from repulsive to attractive using electron-withdrawing substituents or heterocycles. These electrostatic trends appear to span many types of aromatic interactions involving a polar group interacting with a π-surface such as halogen-π, chalcogen-π, and carbonyl-π. (3) Nonpolar groups form weak but measurable stabilizing interactions with aromatic surfaces in organic solvents due to favorable dispersion and/or solvophobic effects. A good predictor of the interaction strength is provided by the change in solvent-accessible surface area. (4) Solvent effects modulate the aromatic interactions in the forms of solvophobic effects and competitive solvation, which can be modeled using solvent cohesion density and specific solvent-solute interactions.
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Affiliation(s)
- Ping Li
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Erik C. Vik
- Vertex Pharmaceuticals, 50 Northern Avenue, Boston, Massachusetts 02210, United States
| | - Ken D. Shimizu
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina 29208, United States
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24
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Keshri SK, Nakanishi W, Takai A, Ishizuka T, Kojima T, Takeuchi M. Discrete π Stack of a Tweezer-Shaped Naphthalenediimide-Anthracene Conjugate. Chemistry 2020; 26:13288-13294. [PMID: 32583576 DOI: 10.1002/chem.202002477] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2020] [Indexed: 12/22/2022]
Abstract
The design and synthesis of a tweezer-shaped naphthalenediimide (NDI)-anthracene conjugate (2NDI) are reported. In the structure of the closed form (πNDI ⋅⋅⋅πNDI stack) of 2NDI, which was elucidated by single-crystal XRD, the existence of C-H⋅⋅⋅O hydrogen bonding involving the nearest carbonyl oxygen atom of an NDI unit was suggested. The tunability of πNDI ⋅⋅⋅πNDI interactions was studied by means of UV/Vis absorption, fluorescence and NMR spectroscopy and molecular modelling. This revealed that the πNDI ⋅⋅⋅πNDI interactions in 2NDI affect the absorption and emission properties depending on the temperature. Furthermore, in polar solvents, 2NDI prefers the stronger πNDI ⋅⋅⋅πNDI stack, whereas the πNDI ⋅⋅⋅πNDI interaction is diminished in nonpolar solvents. Importantly, the conformational variations of 2NDI can be reversibly switched by variation in temperature, and this suggests potential application for fluorogenic molecular switches upon temperature changes.
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Affiliation(s)
- Sudhir Kumar Keshri
- Molecular Design and Function Group, National Institute for Materials Science (NIMS), 1-2-1 Sengen, Tsukuba, 305-0047, Japan
| | - Waka Nakanishi
- Molecular Design and Function Group, National Institute for Materials Science (NIMS), 1-2-1 Sengen, Tsukuba, 305-0047, Japan
| | - Atsuro Takai
- Molecular Design and Function Group, National Institute for Materials Science (NIMS), 1-2-1 Sengen, Tsukuba, 305-0047, Japan
| | - Tomoya Ishizuka
- Department of Chemistry, Faculty of Pure & Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8571, Japan
| | - Takahiko Kojima
- Department of Chemistry, Faculty of Pure & Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8571, Japan
| | - Masayuki Takeuchi
- Molecular Design and Function Group, National Institute for Materials Science (NIMS), 1-2-1 Sengen, Tsukuba, 305-0047, Japan
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25
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Wight CD, Xiao Q, Wagner HR, Hernandez EA, Lynch VM, Iverson BL. Mechanistic Analysis of Solid-State Colorimetric Switching: Monoalkoxynaphthalene-Naphthalimide Donor–Acceptor Dyads. J Am Chem Soc 2020; 142:17630-17643. [DOI: 10.1021/jacs.0c08137] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Christopher D. Wight
- Department of Chemistry, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Qifan Xiao
- Department of Chemistry, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Holden R. Wagner
- Department of Chemistry, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Eduardo A. Hernandez
- Department of Chemistry, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Vincent M. Lynch
- Department of Chemistry, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Brent L. Iverson
- Department of Chemistry, The University of Texas at Austin, Austin, Texas 78712, United States
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26
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Grosu IG, Filip X, Miclăuș MO, Filip C. Hydrogen-Mediated Noncovalent Interactions in Solids: What Can NMR Crystallography Tell About? Molecules 2020; 25:E3757. [PMID: 32824749 PMCID: PMC7463941 DOI: 10.3390/molecules25163757] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2020] [Revised: 08/15/2020] [Accepted: 08/16/2020] [Indexed: 12/18/2022] Open
Abstract
Hydrogen atoms play a crucial role in the aggregation of organic (bio)molecules through diverse number of noncovalent interactions that they mediate, such as electrostatic in proton transfer systems, hydrogen bonding, and CH-π interactions, to mention only the most prominent. To identify and adequately describe such low-energy interactions, increasingly sensitive methods have been developed over time, among which quantum chemical computations have witnessed impressive advances in recent years. For reaching the present state-of-the-art, computations had to rely on a pool of relevant experimental data, needed at least for validation, if not also for other purposes. In the case of molecular crystals, the best illustration for the synergy between computations and experiment is given by the so-called NMR crystallography approach. Originally designed to increase the confidence level in crystal structure determination of organic compounds from powders, NMR crystallography is able now to offer also a wealth of information regarding the noncovalent interactions that drive molecules to pack in a given crystalline pattern or another. This is particularly true for the noncovalent interactions which depend on the exact location of labile hydrogen atoms in the system: in such cases, NMR crystallography represents a valuable characterization tool, in some cases complementing even the standard single-crystal X-ray diffraction technique. A concise introduction in the field is made in this mini-review, which is aimed at providing a comprehensive picture with respect to the current accuracy level reached by NMR crystallography in the characterization of hydrogen-mediated noncovalent interactions in organic solids. Different types of practical applications are illustrated with the example of molecular crystals studied by our research group, but references to other representative developments reported in the literature are also made. By summarizing the major concepts and methodological progresses, the present work is also intended to be a guide to the practical potential of this relatively recent analytical tool for the scientists working in areas where crystal engineering represents the main approach for rational design of novel materials.
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Affiliation(s)
| | | | | | - Claudiu Filip
- National Institute for R&D of Isotopic and Molecular Technologies, 400293 Cluj, Romania; (I.G.G.); (X.F.); (M.O.M.)
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27
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Andersson CD, Mishra BK, Forsgren N, Ekström F, Linusson A. Physical Mechanisms Governing Substituent Effects on Arene-Arene Interactions in a Protein Milieu. J Phys Chem B 2020; 124:6529-6539. [PMID: 32610016 PMCID: PMC7467712 DOI: 10.1021/acs.jpcb.0c03778] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2020] [Revised: 06/26/2020] [Indexed: 11/28/2022]
Abstract
Arene-arene interactions play important roles in protein-ligand complex formation. Here, we investigate the characteristics of arene-arene interactions between small organic molecules and aromatic amino acids in protein interiors. The study is based on X-ray crystallographic data and quantum mechanical calculations using the enzyme acetylcholinesterase and selected inhibitory ligands as a model system. It is shown that the arene substituents of the inhibitors dictate the strength of the interaction and the geometry of the resulting complexes. Importantly, the calculated interaction energies correlate well with the measured inhibitor potency. Non-hydrogen substituents strengthened all interaction types in the protein milieu, in keeping with results for benzene dimer model systems. The interaction energies were dispersion-dominated, but substituents that induced local dipole moments increased the electrostatic contribution and thus yielded more strongly bound complexes. These findings provide fundamental insights into the physical mechanisms governing arene-arene interactions in the protein milieu and thus into molecular recognition between proteins and small molecules.
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Affiliation(s)
| | - Brijesh Kumar Mishra
- International
Institute of Information Technology, Bangalore, Karnataka 560003, India
| | - Nina Forsgren
- CBRN
Defense and Security, Swedish Defense Research
Agency, SE-90621 Umeå, Sweden
| | - Fredrik Ekström
- CBRN
Defense and Security, Swedish Defense Research
Agency, SE-90621 Umeå, Sweden
| | - Anna Linusson
- Department
of Chemistry, Umeå University, SE-90187 Umeå, Sweden
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28
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Satake A. The Solvent Effect on Weak Interactions in Supramolecular Polymers: Differences between Small Molecular Probes and Supramolecular Polymers. Chempluschem 2020; 85:1542-1548. [PMID: 32697033 DOI: 10.1002/cplu.202000400] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2020] [Revised: 07/04/2020] [Indexed: 12/27/2022]
Abstract
In this minireview, weak interactions that occur in supramolecular polymers are discussed. Combination of weak and strong interactions plays an important role in the construction of supramolecular polymers. It is beneficial to separate the contributions of the weak interactions, as well as each solvent effect on the weak interactions. However, it is generally difficult to observe each solvent effect separately at work in each interaction. Small molecular probes are useful to estimate the contributions of the weak interaction. But, the results should be treated with caution when applied to supramolecular polymer systems. To overcome the problems, a new solvent parameter, solvation ability (SA), is introduced, which was determined on the balance point of extended and stacked forms of porphyrin-based interconvertible supramolecular polymers.
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Affiliation(s)
- Akiharu Satake
- Department of Chemistry, Faculty of Science Division II, Tokyo University of Science, 1-3 Kagurazaka, Shinjuku-ku, Tokyo, 162-8601, Japan
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29
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Satake A, Suzuki Y, Sugimoto M, Kuramochi Y. Mechanistic Study of the Solvent-Dependent Formation of Extended and Stacked Supramolecular Polymers Composed of Bis(imidazolylporphyrinatozinc) Molecules. Chemistry 2020; 26:669-684. [PMID: 31618485 DOI: 10.1002/chem.201903608] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2019] [Revised: 09/29/2019] [Indexed: 12/27/2022]
Abstract
Bis(imidazolylporphyrinatozinc) molecules linked through a 1,3-butadiynylene moiety respond to the solvents they are dissolved in to afford exclusively extended (E) or stacked (S) supramolecular polymers. This system is expected to be a solvation/desolvation indicator. However, the principles underlying the solvent-dependent formation of the two types of polymers and the mechanism of the transformation between them are unclear. The formation of the polymers is considered to depend on the two types of complementary coordination bonds that can be formed and the π-π interactions between the porphyrins. In this study, the contributions and solvent dependence of both the coordination bonds and the π-π interactions have been investigated. The results clearly indicate that the coordination bonds are weakly or little solvent-dependent, and that the π-π interactions function effectively only in the inner porphyrins of the S-polymer and are strongly solvent-dependent. Thermodynamic analysis revealed that the formation of the E- or S-polymer in solution is determined by the total energies and the type of solvent used. The transformation of the E- to S-polymer was investigated by gel permeation chromatography. The kinetics of the transformation were also determined. The role of the terminal imidazolylporphyrinatozinc moieties was also investigated: The results indicate that the transformation from the E- to S-polymer occurs by an exchange mechanism between the polymers, induced by attack of terminal free imidazolyl groups on a polymer to zinc porphyrins on other polymers.
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Affiliation(s)
- Akiharu Satake
- Graduate School of Science, Tokyo University of Science, 1-3 Kagurazaka, Shinjuku-ku, Tokyo, 162-8601, Japan.,Department of Chemistry, Faculty of Science Division II, Tokyo University of Science, Tokyo, 162-8601, Japan
| | - Yuki Suzuki
- Graduate School of Science, Tokyo University of Science, 1-3 Kagurazaka, Shinjuku-ku, Tokyo, 162-8601, Japan
| | - Motonobu Sugimoto
- Graduate School of Science, Tokyo University of Science, 1-3 Kagurazaka, Shinjuku-ku, Tokyo, 162-8601, Japan
| | - Yusuke Kuramochi
- Graduate School of Science, Tokyo University of Science, 1-3 Kagurazaka, Shinjuku-ku, Tokyo, 162-8601, Japan.,Department of Chemistry, Faculty of Science Division II, Tokyo University of Science, Tokyo, 162-8601, Japan
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30
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Vidal-Vidal Á, Alonso-Gómez JL, Cid MM, Marín-Luna M. Aromatic interactions of allenyl-anthracene derivatives with pi-electron acceptor molecules: an experimental and computational study. Supramol Chem 2019. [DOI: 10.1080/10610278.2019.1685672] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Affiliation(s)
- Ángel Vidal-Vidal
- Departamento de Química Orgánica, Universidade de Vigo, Vigo, Spain
- CITACA - Clúster de Investigación e Transferencia Agroalimentaria do Campus Auga, Universidade de Vigo, Ourense, Spain
| | | | - María Magdalena Cid
- Departamento de Química Orgánica, Universidade de Vigo, Vigo, Spain
- CITACA - Clúster de Investigación e Transferencia Agroalimentaria do Campus Auga, Universidade de Vigo, Ourense, Spain
| | - Marta Marín-Luna
- Departamento de Química Orgánica, Universidade de Vigo, Vigo, Spain
- CITACA - Clúster de Investigación e Transferencia Agroalimentaria do Campus Auga, Universidade de Vigo, Ourense, Spain
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31
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Axtell JC, Messina MS, Liu JY, Galaktionova D, Schwan J, Porter TM, Savage MD, Wixtrom AI, Rheingold AL, Kubiak CP, Winkler JR, Gray HB, Král P, Alexandrova AN, Spokoyny AM. Photooxidative Generation of Dodecaborate-Based Weakly Coordinating Anions. Inorg Chem 2019; 58:10516-10526. [PMID: 31247818 DOI: 10.1021/acs.inorgchem.9b00935] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Redox-active proanions of the type B12(OCH2Ar)12 [Ar = C6F5 (1), 4-CF3C6H4 (2), 3,5-(CF3)2C6H3 (3)] are introduced in the context of an experimental and computational study of the visible-light-initiated polymerization of a family of styrenes. Neutral, air-stable proanions 1-3 were found to initiate styrene polymerization through single-electron oxidation under blue-light irradiation, resulting in polymers with number-average molecular weights (Mn) ranging from ∼6 to 100 kDa. Shorter polymer products were observed in the majority of experiments, except in the case of monomers containing 4-X (X = F, Cl, Br) substituents on the styrene monomer when polymerized in the presence of 1 in CH2Cl2. Only under these specific conditions are longer polymers (>100 kDa) observed, strongly supporting the formulation that reaction conditions significantly modulate the degree of ion pairing between the dodecaborate anion and cationic chain end. This also suggests that 1-3 behave as weakly coordinating anions (WCA) upon one-electron reduction because no incorporation of the cluster-based photoinitiators is observed in the polymeric products analyzed. Overall, this work is a conceptual realization of a single reagent that can serve as a strong photooxidant, subsequently forming a WCA.
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Affiliation(s)
- Jonathan C Axtell
- Department of Chemistry and Biochemistry , University of California, Los Angeles , 607 Charles E. Young Drive East , Los Angeles , California 90095-1569 , United States
| | - Marco S Messina
- Department of Chemistry and Biochemistry , University of California, Los Angeles , 607 Charles E. Young Drive East , Los Angeles , California 90095-1569 , United States.,California NanoSystems Institute , University of California, Los Angeles , 570 Westwood Plaza , Los Angeles , California 90095-1569 , United States
| | - Ji-Yuan Liu
- Key Laboratory for Advanced Materials, Center for Computational Chemistry and Research Institute of Industrial Catalysts, School of Molecular Science and Engineering , East China University of Science and Technology , Shanghai 200237 , P. R. China
| | | | - Josef Schwan
- Beckman Institute , California Institute of Technology , Pasadena , California 91115 , United States
| | - Tyler M Porter
- Department of Chemistry and Biochemistry , University of California, San Diego , 9500 Gilman Drive , La Jolla , California 92093 , United States
| | - Miles D Savage
- Department of Chemistry and Biochemistry , University of California, Los Angeles , 607 Charles E. Young Drive East , Los Angeles , California 90095-1569 , United States
| | - Alex I Wixtrom
- Department of Chemistry and Biochemistry , University of California, Los Angeles , 607 Charles E. Young Drive East , Los Angeles , California 90095-1569 , United States
| | - Arnold L Rheingold
- Department of Chemistry and Biochemistry , University of California, San Diego , 9500 Gilman Drive , La Jolla , California 92093 , United States
| | - Clifford P Kubiak
- Department of Chemistry and Biochemistry , University of California, San Diego , 9500 Gilman Drive , La Jolla , California 92093 , United States
| | - Jay R Winkler
- Beckman Institute , California Institute of Technology , Pasadena , California 91115 , United States
| | - Harry B Gray
- Beckman Institute , California Institute of Technology , Pasadena , California 91115 , United States
| | | | - Anastassia N Alexandrova
- Department of Chemistry and Biochemistry , University of California, Los Angeles , 607 Charles E. Young Drive East , Los Angeles , California 90095-1569 , United States
| | - Alexander M Spokoyny
- Department of Chemistry and Biochemistry , University of California, Los Angeles , 607 Charles E. Young Drive East , Los Angeles , California 90095-1569 , United States.,California NanoSystems Institute , University of California, Los Angeles , 570 Westwood Plaza , Los Angeles , California 90095-1569 , United States
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32
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Li P, Vik EC, Maier JM, Karki I, Strickland SMS, Umana JM, Smith MD, Pellechia PJ, Shimizu KD. Electrostatically Driven CO−π Aromatic Interactions. J Am Chem Soc 2019; 141:12513-12517. [DOI: 10.1021/jacs.9b06363] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Ping Li
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina 29208, United States
| | - Erik C. Vik
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina 29208, United States
| | - Josef M. Maier
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina 29208, United States
| | - Ishwor Karki
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina 29208, United States
| | - Sharon M. S. Strickland
- Department of Biology, Chemistry, and Physics, Converse College, Spartanburg, South Carolina 29302, United States
| | - Jessica M. Umana
- Department of Biology, Chemistry, and Physics, Converse College, Spartanburg, South Carolina 29302, United States
| | - Mark D. Smith
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina 29208, United States
| | - Perry J. Pellechia
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina 29208, United States
| | - Ken D. Shimizu
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina 29208, United States
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33
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Aliev AE, Motherwell WB. Some Recent Advances in the Design and Use of Molecular Balances for the Experimental Quantification of Intramolecular Noncovalent Interactions of π Systems. Chemistry 2019; 25:10516-10530. [DOI: 10.1002/chem.201900854] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2019] [Revised: 05/09/2019] [Indexed: 02/03/2023]
Affiliation(s)
- Abil E. Aliev
- Department of ChemistryUniversity College London 20 Gordon Street London WC1H 0AJ UK
| | - William B. Motherwell
- Department of ChemistryUniversity College London 20 Gordon Street London WC1H 0AJ UK
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34
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Bravin C, Licini G, Hunter CA, Zonta C. Supramolecular cage encapsulation as a versatile tool for the experimental quantification of aromatic stacking interactions. Chem Sci 2019; 10:1466-1471. [PMID: 30809364 PMCID: PMC6354842 DOI: 10.1039/c8sc04406f] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2018] [Accepted: 11/22/2018] [Indexed: 01/21/2023] Open
Abstract
The widespread presence of aromatic stacking interactions in chemical and biological systems, combined with their relatively small energetic contribution, have led to a plethora of theoretical and experimental studies for their quantification and rationalization. Typically, π-π aromatic interactions are studied as a function of substituents to gather information about the interaction mechanism. While experiments suggest that aromatic interactions are dominated by local electrostatic contacts between π-electron density and CH groups, theoretical work has raised the possibility that direct electrostatic interactions between local dipoles of the substituents may play a role. We describe a supramolecular cage that binds two aromatic carboxylates in a stacked geometry such that the aromatic substituents are remote in space. Chemical Double Mutant Cycles (DMCs) were used to measure fifteen different aromatic stacking interactions as a function of substituent (NMe2, OMe, Me, Cl and NO2). When both aromatic rings have electron-withdrawing nitro substituents, the interaction is attractive (-2.8 kJ mol-1) due to reduced π-electron repulsion. When both aromatic rings have electron-donating di-methylamino substituents, the interaction is repulsive (+2.0 kJ mol-1) due to increased π-electron repulsion. The results show that aromatic stacking interactions are dominated by short range electrostatic contacts rather than substituent dipole interactions.
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Affiliation(s)
- Carlo Bravin
- Department of Chemical Sciences , University of Padova , Via Marzolo 1 , 35131 Padova , Italy .
| | - Giulia Licini
- Department of Chemical Sciences , University of Padova , Via Marzolo 1 , 35131 Padova , Italy .
| | - Christopher A Hunter
- Department of Chemistry , University of Cambridge , Lensfield Road , Cambridge CB2 1EW , UK
| | - Cristiano Zonta
- Department of Chemical Sciences , University of Padova , Via Marzolo 1 , 35131 Padova , Italy .
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35
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Hwang J, Li P, Vik EC, Karki I, Shimizu KD. Study of through-space substituent–π interactions using N-phenylimide molecular balances. Org Chem Front 2019. [DOI: 10.1039/c9qo00195f] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Substituent–π interactions associated with aromatic stacking interactions were experimentally measured using a small N-phenylimide molecular balance model system.
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Affiliation(s)
- Jungwun Hwang
- Department of Chemistry and Biochemistry
- University of South Carolina
- Columbia
- USA
| | - Ping Li
- Department of Chemistry and Biochemistry
- University of South Carolina
- Columbia
- USA
| | - Erik C. Vik
- Department of Chemistry and Biochemistry
- University of South Carolina
- Columbia
- USA
| | - Ishwor Karki
- Department of Chemistry and Biochemistry
- University of South Carolina
- Columbia
- USA
| | - Ken D. Shimizu
- Department of Chemistry and Biochemistry
- University of South Carolina
- Columbia
- USA
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36
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Saha B, Bhattacharyya PK. Density Functional Study on the Adsorption of 5-Membered N-Heterocycles on B/N/BN-Doped Graphene: Coronene as a Model System. ACS OMEGA 2018; 3:16753-16768. [PMID: 31458306 PMCID: PMC6643900 DOI: 10.1021/acsomega.8b02340] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2018] [Accepted: 11/23/2018] [Indexed: 05/07/2023]
Abstract
Adsorption of seven 5-membered N-heterocycles on B/N/BN-doped graphene (with coronene as a model system) has been studied using density functional theory (DFT). The geometry of the complexes validated the involvement of both π···π stacking and N-H···π interaction in the adsorption process. The stability of the complexes is measured in terms of stabilization energy, and the results suggested that the complexes are stable enough (stabilization energies are in the range of 7.61-14.77 kcal mol-1). Studies confirmed the stability of complexes in the solvent phase too irrespective of the dielectric of the solvent. Dispersive force is the major mode of interaction in stabilizing the complexes. Natural bond orbital analysis indicated a small contribution from electrostatic and covalent interactions. Thermochemical analysis revealed that the complexation is exothermic in nature and favorable at a lower temperature. Adsorption of N-heterocycles exerts a nominal impact on the electronic properties of the undoped/doped graphene. The study presents a simple approach to introduce an arbitrary functionality to undoped/doped graphene by preserving its electronic properties.
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Affiliation(s)
- Bapan Saha
- Department
of Chemistry, Handique Girls’ College, Panbazar, Guwahati 781001, Assam, India
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37
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Marin-Luna M, Pölloth B, Zott F, Zipse H. Size-dependent rate acceleration in the silylation of secondary alcohols: the bigger the faster. Chem Sci 2018; 9:6509-6515. [PMID: 30310581 PMCID: PMC6115683 DOI: 10.1039/c8sc01889h] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2018] [Accepted: 06/27/2018] [Indexed: 01/25/2023] Open
Abstract
Relative rates for the reaction of secondary alcohols carrying large aromatic moieties with silyl chlorides carrying equally large substituents have been determined in organic solvents. Introducing thoroughly matching pairs of big dispersion energy donor (DED) groups enhanced rate constants up to four times, notably depending on the hydrogen bond donor ability of the solvent. A linear correlation between computed dispersion energy contributions to the stability of the silyl ether products and experimental relative rate constants was found. These results indicate a cooperation between solvophobic effects and DED-groups in the kinetic control of silylation reactions.
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Affiliation(s)
- Marta Marin-Luna
- Department of Chemistry , LMU München , Butenandtstrasse 5-13 , 81377 , München , Germany .
| | - Benjamin Pölloth
- Department of Chemistry , LMU München , Butenandtstrasse 5-13 , 81377 , München , Germany .
| | - Fabian Zott
- Department of Chemistry , LMU München , Butenandtstrasse 5-13 , 81377 , München , Germany .
| | - Hendrik Zipse
- Department of Chemistry , LMU München , Butenandtstrasse 5-13 , 81377 , München , Germany .
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38
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Synthesis of New 5-Aryl-benzo[ f][1,7]naphthyridines via a Cascade Process (Ugi-3CR/Intramolecular Aza-Diels-Alder Cycloaddition)/Aromatization. Molecules 2018; 23:molecules23082029. [PMID: 30110915 PMCID: PMC6222401 DOI: 10.3390/molecules23082029] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2018] [Revised: 08/11/2018] [Accepted: 08/11/2018] [Indexed: 11/17/2022] Open
Abstract
A series of eight new 5-aryl-benzo[f][1,7]naphthyridines were synthesized in 17 to 64% overall yields via an improved MW-assisted cascade-like one pot process (Ugi–three component reaction/intramolecular aza-Diels-Alder cycloaddition) coupled to an aromatization process from tri-functional dienophile-containing ester-anilines, substituted benzaldehydes and the chain-ring tautomerizable 2-isocyano-1-morpholino-3-phenylpropan-1-one as starting reagents, under mild conditions. The doubly activated dienophile and the aza-diene functionalities of the eight new Ugi-adducts were exploited to perform an in situ aza-Diels-Alder cycloaddition/aromatization (dehydration/oxidation) process, toward the complex polysubstituted 5-aryl-polyheterocycles, which could be taken as starting point for further SAR studies because the benzo[f][1,7]naphthyridine is the core of various bioactive products. It is relevant to emphasize that the synthesis or isolation of benzo[f][1,7]naphthyridines containing a substituted aromatic ring in the C-5 position, has not been published before.
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39
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Sharber SA, Shih KC, Mann A, Frausto F, Haas TE, Nieh MP, Thomas SW. Reversible mechanofluorochromism of aniline-terminated phenylene ethynylenes. Chem Sci 2018; 9:5415-5426. [PMID: 30009013 PMCID: PMC6009520 DOI: 10.1039/c8sc00980e] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2018] [Accepted: 05/23/2018] [Indexed: 01/24/2023] Open
Abstract
Seven three-ring phenylene-ethynylene (PE) structural analogs, differing only in the lengths of alkyl chains on terminal aniline substituents, show 50-62 nm bathochromic shifts in emission maxima in response to mechanical force (mechanofluorochromism, MC). These shifts are fully reversible with heat or solvent fuming. Shearing of these solids yields a transition from green-emitting crystalline phases to orange-emitting amorphous phases as established by differential scanning calorimetry and X-ray diffraction. Molecules with shorter alkyl chain lengths required higher temperatures to recover the hypsochromically shifted crystalline phases after grinding, while the recovery with chain lengths longer than butyl occurred at room temperature. In addition to this structure-dependent thermochromism, these compounds retain their MC properties in polymer hosts to various extents. The crystalline phases of these materials have PE chromophores that are twisted due to non-covalent perfluoroarene-arene (ArF-ArH) interactions involving perfluorophenyl pendants and the terminal rings of the PE chromophore, resulting in interrupted conjugation and an absence of chromophore aggregation. The MC behavior of an analog without the perfluoroarene rings is severely attenuated. This work demonstrates the general utility of twisted PEs as stimuli-responsive moieties and reveals clear structure-property relationships regarding the effects of alkyl chain length on these materials.
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Affiliation(s)
- Seth A Sharber
- Department of Chemistry , Tufts University , 62 Talbot Avenue , Medford , MA 02155 , USA .
| | - Kuo-Chih Shih
- Department of Chemical & Biomolecular Engineering , University of Connecticut , 97 North Eagleville Road, Storrs , CT 06269 , USA
| | - Arielle Mann
- Department of Chemistry , Tufts University , 62 Talbot Avenue , Medford , MA 02155 , USA .
| | - Fanny Frausto
- Department of Chemistry , Tufts University , 62 Talbot Avenue , Medford , MA 02155 , USA .
| | - Terry E Haas
- Department of Chemistry , Tufts University , 62 Talbot Avenue , Medford , MA 02155 , USA .
| | - Mu-Ping Nieh
- Department of Chemical & Biomolecular Engineering , University of Connecticut , 97 North Eagleville Road, Storrs , CT 06269 , USA
| | - Samuel W Thomas
- Department of Chemistry , Tufts University , 62 Talbot Avenue , Medford , MA 02155 , USA .
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40
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Liu W, Johnson A, Smith BD. Guest Back-Folding: A Molecular Design Strategy That Produces a Deep-Red Fluorescent Host/Guest Pair with Picomolar Affinity in Water. J Am Chem Soc 2018; 140:3361-3370. [PMID: 29439578 DOI: 10.1021/jacs.7b12991] [Citation(s) in RCA: 49] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
One of the major goals of modern supramolecular chemistry, with important practical relevance in many technical fields, is the development of synthetic host/guest partners with ultrahigh affinity and selectivity in water. Currently, most association pairs exhibit micromolar affinity or weaker, and there are very few host/guest systems with Ka > 109 M-1, apparently due to a barrier imposed by enthalpy/entropy compensation. This present study investigated the threading of a water-soluble tetralactam cyclophane by a deep-red fluorescent squaraine guest with flanking polyethylene glycol chains, an association process that is dominated by a highly favorable enthalpic driving force. A squaraine structure was rationally designed to permit guest back-folding as a strategy to greatly expand the hydrophobic surface area that could be buried upon complexation. Guided by computational modeling, an increasing number of N-benzyl groups were appended to the squaraine core, so that, after threading, the aromatic rings could fold back and stack against the cyclophane periphery. The final design iteration exhibited an impressive combination of fluorescence and supramolecular properties, including ratiometric change in deep-red emission, picomolar affinity ( Ka = 5.1 × 1010 M-1), and very rapid threading ( kon = 7.9 × 107 M-1 s-1) in water at 25 °C. Similar excellent behavior was observed in serum solution. A tangible outcome of this study is a new cyclophane/squaraine association pair that will be a versatile platform for many different types of fluorescence-based imaging and diagnostics applications. From a broader perspective, guest back-folding of aromatic groups is a promising new supramolecular stabilization strategy to overcome enthalpy/entropy compensation and produce ultrahigh affinity [2]pseudorotaxane complexes in water and biological media.
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Affiliation(s)
- Wenqi Liu
- Department of Chemistry and Biochemistry , University of Notre Dame , 236 Nieuwland Science Hall , Notre Dame , Indiana 46556 , United States
| | - Andrew Johnson
- Division of Science , Lindsey Wilson College , 317 Fugitte Science Center , Columbia , Kentucky 42728 , United States
| | - Bradley D Smith
- Department of Chemistry and Biochemistry , University of Notre Dame , 236 Nieuwland Science Hall , Notre Dame , Indiana 46556 , United States
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41
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Chua MH, Kim T, Lim ZL, Gopalakrishna TY, Ni Y, Xu J, Kim D, Wu J. BODIPY-Based Antiaromatic Macrocycles: Facile Synthesis by Knoevenagel Condensation and Unusual Aggregation-Enhanced Two-Photon Absorption Properties. Chemistry 2018; 24:2232-2241. [DOI: 10.1002/chem.201705271] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2017] [Indexed: 01/05/2023]
Affiliation(s)
- Ming Hui Chua
- Institute of Materials Research and Engineering; A*STAR, 2; Fusionopolis Way, Innovis, #08-03 Singapore 138634 Singapore
- Department of Chemistry; National University of Singapore, Block S8 Level 3; 3 Science Drive 3 Singapore 117543 Singapore
| | - Taeyeon Kim
- Department of Chemistry; Yonsei University; 50 Yonsei-ro Seodaemoon-gu Seoul 03722 Republic of Korea
| | - Zheng Long Lim
- Department of Chemistry; National University of Singapore, Block S8 Level 3; 3 Science Drive 3 Singapore 117543 Singapore
| | - Tullimilli Y. Gopalakrishna
- Department of Chemistry; National University of Singapore, Block S8 Level 3; 3 Science Drive 3 Singapore 117543 Singapore
| | - Yong Ni
- Department of Chemistry; National University of Singapore, Block S8 Level 3; 3 Science Drive 3 Singapore 117543 Singapore
| | - Jianwei Xu
- Institute of Materials Research and Engineering; A*STAR, 2; Fusionopolis Way, Innovis, #08-03 Singapore 138634 Singapore
| | - Dongho Kim
- Department of Chemistry; Yonsei University; 50 Yonsei-ro Seodaemoon-gu Seoul 03722 Republic of Korea
| | - Jishan Wu
- Institute of Materials Research and Engineering; A*STAR, 2; Fusionopolis Way, Innovis, #08-03 Singapore 138634 Singapore
- Department of Chemistry; National University of Singapore, Block S8 Level 3; 3 Science Drive 3 Singapore 117543 Singapore
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42
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Farrell D, Kingston SJ, Tungulin D, Nuzzo S, Twamley B, Platts JA, Baker RJ. N
-Aryl-9,10-phenanthreneimines as Scaffolds for Exploring Noncovalent Interactions: A Structural and Computational Study. European J Org Chem 2017. [DOI: 10.1002/ejoc.201700884] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- David Farrell
- School of Chemistry; University of Dublin; Trinity College; 2 Dublin Ireland
| | - Samuel J. Kingston
- School of Chemistry; University of Dublin; Trinity College; 2 Dublin Ireland
| | - Dmitry Tungulin
- School of Chemistry; University of Dublin; Trinity College; 2 Dublin Ireland
| | - Stefano Nuzzo
- School of Chemistry; University of Dublin; Trinity College; 2 Dublin Ireland
| | - Brendan Twamley
- School of Chemistry; University of Dublin; Trinity College; 2 Dublin Ireland
| | - James A. Platts
- School of Chemistry; Cardiff University; Main Building CF10 3AT Cardiff U.K
| | - Robert J. Baker
- School of Chemistry; University of Dublin; Trinity College; 2 Dublin Ireland
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43
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Barone V, Cacelli I, Ferretti A, Prampolini G. Noncovalent Interactions in the Catechol Dimer. Biomimetics (Basel) 2017; 2:E18. [PMID: 31105180 PMCID: PMC6352673 DOI: 10.3390/biomimetics2030018] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2017] [Revised: 09/04/2017] [Accepted: 09/05/2017] [Indexed: 12/02/2022] Open
Abstract
Noncovalent interactions play a significant role in a wide variety of biological processes and bio-inspired species. It is, therefore, important to have at hand suitable computational methods for their investigation. In this paper, we report on the contribution of dispersion and hydrogen bonds in both stacked and T-shaped catechol dimers, with the aim of delineating the respective role of these classes of interactions in determining the most stable structure. By using second-order Møller⁻Plesset (MP2) calculations with a small basis set, specifically optimized for these species, we have explored a number of significant sections of the interaction potential energy surface and found the most stable structures for the dimer, in good agreement with the highly accurate, but computationally more expensive coupled cluster single and double excitation and the perturbative triples (CCSD(T))/CBS) method.
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Affiliation(s)
- Vincenzo Barone
- Scuola Normale Superiore di Pisa, Piazza dei Cavalieri, I-56126 Pisa, Italy.
| | - Ivo Cacelli
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, Via G. Moruzzi 13, I-56124 Pisa, Italy.
- Istituto di Chimica dei Composti OrganoMetallici (ICCOM-CNR), Area della Ricerca, Via G. Moruzzi 1, I-56124 Pisa, Italy.
| | - Alessandro Ferretti
- Istituto di Chimica dei Composti OrganoMetallici (ICCOM-CNR), Area della Ricerca, Via G. Moruzzi 1, I-56124 Pisa, Italy.
| | - Giacomo Prampolini
- Istituto di Chimica dei Composti OrganoMetallici (ICCOM-CNR), Area della Ricerca, Via G. Moruzzi 1, I-56124 Pisa, Italy.
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44
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Jia F, Yang LP, Li DH, Jiang W. Electronic Substituent Effects of Guests on the Conformational Network and Binding Behavior of Oxatub[4]arene. J Org Chem 2017; 82:10444-10449. [DOI: 10.1021/acs.joc.7b01914] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Fei Jia
- Department
of Chemistry, South University of Science and Technology of China, Xueyuan Blvd 1088, Nanshan District, Shenzhen 518055, China
- Institut
für Chemie und Biochemie, Freie Universität Berlin, Takustraße
3, 14195 Berlin, Germany
| | - Liu-Pan Yang
- Department
of Chemistry, South University of Science and Technology of China, Xueyuan Blvd 1088, Nanshan District, Shenzhen 518055, China
| | - Dong-Hao Li
- Department
of Chemistry, South University of Science and Technology of China, Xueyuan Blvd 1088, Nanshan District, Shenzhen 518055, China
| | - Wei Jiang
- Department
of Chemistry, South University of Science and Technology of China, Xueyuan Blvd 1088, Nanshan District, Shenzhen 518055, China
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45
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Cabaleiro-Lago EM, Rodríguez-Otero J. σ-σ, σ-π, and π-π Stacking Interactions between Six-Membered Cyclic Systems. Dispersion Dominates and Electrostatics Commands. ChemistrySelect 2017. [DOI: 10.1002/slct.201700671] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Enrique M. Cabaleiro-Lago
- Facultade de Ciencias (Dpto. de Química Física); Universidade de Santiago de Compostela; Avda. Alfonso X El Sabio s/n 27002 Lugo, Galicia Spain
| | - Jesús Rodríguez-Otero
- CIQUS and Facultade de Química (Dpto. de Química Física); Universidade de Santiago de Compostela; 15782 Santiago de Compostela, Galicia Spain)
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46
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Barendt TA, Ferreira L, Marques I, Félix V, Beer PD. Anion- and Solvent-Induced Rotary Dynamics and Sensing in a Perylene Diimide [3]Catenane. J Am Chem Soc 2017; 139:9026-9037. [DOI: 10.1021/jacs.7b04295] [Citation(s) in RCA: 49] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Timothy A. Barendt
- Chemistry
Research Laboratory, Department of Chemistry, University of Oxford, 12 Mansfield Road, Oxford OX1 3TA, United Kingdom
| | | | | | | | - Paul D. Beer
- Chemistry
Research Laboratory, Department of Chemistry, University of Oxford, 12 Mansfield Road, Oxford OX1 3TA, United Kingdom
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47
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Riwar LJ, Trapp N, Kuhn B, Diederich F. Substituent Effects in Parallel-Displaced π-π Stacking Interactions: Distance Matters. Angew Chem Int Ed Engl 2017; 56:11252-11257. [DOI: 10.1002/anie.201703744] [Citation(s) in RCA: 68] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2017] [Indexed: 01/10/2023]
Affiliation(s)
- Leslie-Joana Riwar
- Laboratorium für Organische Chemie; ETH Zürich; Vladimir-Prelog-Weg 3 8093 Zürich Switzerland
| | - Nils Trapp
- Laboratorium für Organische Chemie; ETH Zürich; Vladimir-Prelog-Weg 3 8093 Zürich Switzerland
| | - Bernd Kuhn
- F. Hoffmann-La Roche Ltd., Pharma Research and Early Development (pRED), Therapeutic Modalities; Roche Innovation Center Basel; Grenzacherstrasse 124 4070 Basel Switzerland
| | - François Diederich
- Laboratorium für Organische Chemie; ETH Zürich; Vladimir-Prelog-Weg 3 8093 Zürich Switzerland
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48
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Riwar LJ, Trapp N, Kuhn B, Diederich F. Substituenteneffekte auf Stapelwechselwirkungen parallel verschobener π-Systeme: der Abstand ist entscheidend. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201703744] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Leslie-Joana Riwar
- Laboratorium für Organische Chemie; ETH Zürich; Vladimir-Prelog-Weg 3 8093 Zürich Schweiz
| | - Nils Trapp
- Laboratorium für Organische Chemie; ETH Zürich; Vladimir-Prelog-Weg 3 8093 Zürich Schweiz
| | - Bernd Kuhn
- F. Hoffmann-La Roche Ltd., Pharma Research and Early Development (pRED), Therapeutic Modalities; Roche Innovation Center Basel; Grenzacherstrasse 124 4070 Basel Schweiz
| | - François Diederich
- Laboratorium für Organische Chemie; ETH Zürich; Vladimir-Prelog-Weg 3 8093 Zürich Schweiz
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49
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Li P, Maier JM, Vik EC, Yehl CJ, Dial BE, Rickher AE, Smith MD, Pellechia PJ, Shimizu KD. Stabilizing Fluorine–π Interactions. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201702950] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Affiliation(s)
- Ping Li
- Department of Chemistry and Biochemistry University of South Carolina Columbia SC 29208 USA
| | - Josef M. Maier
- Department of Chemistry and Biochemistry University of South Carolina Columbia SC 29208 USA
| | - Erik C. Vik
- Department of Chemistry and Biochemistry University of South Carolina Columbia SC 29208 USA
| | - Christopher J. Yehl
- Department of Chemistry and Biochemistry University of South Carolina Columbia SC 29208 USA
| | - Brent E. Dial
- Department of Chemistry and Biochemistry University of South Carolina Columbia SC 29208 USA
| | - Amanda E. Rickher
- Department of Chemistry and Biochemistry University of South Carolina Columbia SC 29208 USA
| | - Mark D. Smith
- Department of Chemistry and Biochemistry University of South Carolina Columbia SC 29208 USA
| | - Perry J. Pellechia
- Department of Chemistry and Biochemistry University of South Carolina Columbia SC 29208 USA
| | - Ken D. Shimizu
- Department of Chemistry and Biochemistry University of South Carolina Columbia SC 29208 USA
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50
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Li P, Maier JM, Vik EC, Yehl CJ, Dial BE, Rickher AE, Smith MD, Pellechia PJ, Shimizu KD. Stabilizing Fluorine–π Interactions. Angew Chem Int Ed Engl 2017; 56:7209-7212. [DOI: 10.1002/anie.201702950] [Citation(s) in RCA: 58] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2017] [Indexed: 12/19/2022]
Affiliation(s)
- Ping Li
- Department of Chemistry and Biochemistry University of South Carolina Columbia SC 29208 USA
| | - Josef M. Maier
- Department of Chemistry and Biochemistry University of South Carolina Columbia SC 29208 USA
| | - Erik C. Vik
- Department of Chemistry and Biochemistry University of South Carolina Columbia SC 29208 USA
| | - Christopher J. Yehl
- Department of Chemistry and Biochemistry University of South Carolina Columbia SC 29208 USA
| | - Brent E. Dial
- Department of Chemistry and Biochemistry University of South Carolina Columbia SC 29208 USA
| | - Amanda E. Rickher
- Department of Chemistry and Biochemistry University of South Carolina Columbia SC 29208 USA
| | - Mark D. Smith
- Department of Chemistry and Biochemistry University of South Carolina Columbia SC 29208 USA
| | - Perry J. Pellechia
- Department of Chemistry and Biochemistry University of South Carolina Columbia SC 29208 USA
| | - Ken D. Shimizu
- Department of Chemistry and Biochemistry University of South Carolina Columbia SC 29208 USA
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