1
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Paporakis S, Binns J, Yalcin D, Drummond CJ, Greaves TL, Martin AV. Automation of liquid crystal phase analysis for SAXS, including the rapid production of novel phase diagrams for SDS-water-PIL systems. J Chem Phys 2023; 158:014902. [PMID: 36610972 DOI: 10.1063/5.0122516] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
Abstract
Lyotropic liquid crystal phases (LCPs) are widely studied for diverse applications, including protein crystallization and drug delivery. The structure and properties of LCPs vary widely depending on the composition, concentration, temperature, pH, and pressure. High-throughput structural characterization approaches, such as small-angle x-ray scattering (SAXS), are important to cover meaningfully large compositional spaces. However, high-throughput LCP phase analysis for SAXS data is currently lacking, particularly for patterns of multiphase mixtures. In this paper, we develop semi-automated software for high throughput LCP phase identification from SAXS data. We validate the accuracy and time-savings of this software on a total of 668 SAXS patterns for the LCPs of the amphiphile hexadecyltrimethylammonium bromide (CTAB) in 53 acidic or basic ionic liquid derived solvents, within a temperature range of 25-75 °C. The solvents were derived from stoichiometric ethylammonium nitrate (EAN) or ethanolammonium nitrate (EtAN) by adding water to vary the ionicity, and adding precursor ions of ethylamine, ethanolamine, and nitric acid to vary the pH. The thermal stability ranges and lattice parameters for CTAB-based LCPs obtained from the semi-automated analysis showed equivalent accuracy to manual analysis, the results of which were previously published. A time comparison of 40 CTAB systems demonstrated that the automated phase identification procedure was more than 20 times faster than manual analysis. Moreover, the high throughput identification procedure was also applied to 300 unpublished scattering patterns of sodium dodecyl-sulfate in the same EAN and EtAN based solvents in this study, to construct phase diagrams that exhibit phase transitions from micellar, to hexagonal, cubic, and lamellar LCPs. The accuracy and significantly low analysis time of the high throughput identification procedure validates a new, rapid, unrestricted analytical method for the determination of LCPs.
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Affiliation(s)
- Stefan Paporakis
- School of Science, College of STEM, RMIT University, 124 La Trobe Street, Melbourne, VIC 3000, Australia
| | - Jack Binns
- School of Science, College of STEM, RMIT University, 124 La Trobe Street, Melbourne, VIC 3000, Australia
| | - Dilek Yalcin
- CSIRO Manufacturing, Clayton, Victoria 3168, Australia
| | - Calum J Drummond
- School of Science, College of STEM, RMIT University, 124 La Trobe Street, Melbourne, VIC 3000, Australia
| | - Tamar L Greaves
- School of Science, College of STEM, RMIT University, 124 La Trobe Street, Melbourne, VIC 3000, Australia
| | - Andrew V Martin
- School of Science, College of STEM, RMIT University, 124 La Trobe Street, Melbourne, VIC 3000, Australia
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2
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Characterising a Protic Ionic Liquid Library with Applied Machine Learning Algorithms. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.120453] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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3
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Duong DV, Tran HV, Pathirannahalage SK, Brown SJ, Hassett M, Yalcin D, Meftahi N, Christofferson AJ, Greaves TL, Le TC. Machine learning investigation of viscosity and ionic conductivity of protic ionic liquids in water mixtures. J Chem Phys 2022; 156:154503. [PMID: 35459305 DOI: 10.1063/5.0085592] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023] Open
Abstract
Ionic liquids (ILs) are well classified as designer solvents based on the ease of tailoring their properties through modifying the chemical structure of the cation and anion. However, while many structure-property relationships have been developed, these generally only identify the most dominant trends. Here, we have used machine learning on existing experimental data to construct robust models to produce meaningful predictions across a broad range of cation and anion chemical structures. Specifically, we used previously collated experimental data for the viscosity and conductivity of protic ILs [T. L. Greaves and C. J. Drummond, Chem. Rev. 115, 11379-11448 (2015)] as the inputs for multiple linear regression and neural network models. These were then used to predict the properties of all 1827 possible cation-anion combinations (excluding the input combinations). These models included the effect of water content of up to 5 wt. %. A selection of ten new protic ILs was then prepared, which validated the usefulness of the models. Overall, this work shows that relatively sparse data can be used productively to predict physicochemical properties of vast arrays of ILs.
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Affiliation(s)
- Dung Viet Duong
- School of Engineering, STEM College, RMIT University, GPO Box 2476, Melbourne, VIC 3001, Australia
| | - Hung-Vu Tran
- Department of Chemistry, University of Houston, 4800 Calhoun Road, Houston, Texas 77204-5003, USA
| | | | - Stuart J Brown
- School of Science, STEM College, RMIT University, GPO Box 2476, Melbourne, VIC 3001, Australia
| | - Michael Hassett
- School of Science, STEM College, RMIT University, GPO Box 2476, Melbourne, VIC 3001, Australia
| | - Dilek Yalcin
- CSIRO Manufacturing, Clayton, VIC 3168, Australia
| | - Nastaran Meftahi
- ARC Centre of Excellence in Exciton Science, School of Science, RMIT University, Melbourne, VIC 3001, Australia
| | - Andrew J Christofferson
- School of Science, STEM College, RMIT University, GPO Box 2476, Melbourne, VIC 3001, Australia
| | - Tamar L Greaves
- School of Science, STEM College, RMIT University, GPO Box 2476, Melbourne, VIC 3001, Australia
| | - Tu C Le
- School of Engineering, STEM College, RMIT University, GPO Box 2476, Melbourne, VIC 3001, Australia
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4
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Han Q, Brown SJ, Drummond CJ, Greaves TL. Protein aggregation and crystallization with ionic liquids: Insights into the influence of solvent properties. J Colloid Interface Sci 2022; 608:1173-1190. [PMID: 34735853 DOI: 10.1016/j.jcis.2021.10.087] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2021] [Revised: 10/13/2021] [Accepted: 10/15/2021] [Indexed: 12/13/2022]
Abstract
Ionic liquids (ILs) have been used in solvents for proteins in many applications, including biotechnology, pharmaceutics, and medicine due to their tunable physicochemical and biological properties. Protein aggregation is often undesirable, and predominantly occurs during bioprocesses, while the aggregation process can be reversible or irreversible and the aggregates formed can be native/non-native and soluble/insoluble. Recent studies have clearly identified key properties of ILs and IL-water mixtures related to protein performance, suggesting the use of the tailorable properties of ILs to inhibit protein aggregation, to promote protein crystallization, and to control protein aggregation pathways. This review discusses the critical properties of IL and IL-water mixtures and presents the latest understanding of the protein aggregation pathways and the development of IL systems that affect or control the protein aggregation process. Through this feature article, we hope to inspire further advances in understanding and new approaches to controlling protein behavior to optimize bioprocesses.
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Affiliation(s)
- Qi Han
- School of Science, STEM College, RMIT University, 124 La Trobe Street, Melbourne, VIC 3000, Australia
| | - Stuart J Brown
- School of Science, STEM College, RMIT University, 124 La Trobe Street, Melbourne, VIC 3000, Australia
| | - Calum J Drummond
- School of Science, STEM College, RMIT University, 124 La Trobe Street, Melbourne, VIC 3000, Australia
| | - Tamar L Greaves
- School of Science, STEM College, RMIT University, 124 La Trobe Street, Melbourne, VIC 3000, Australia.
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5
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Ausín D, Parajó JJ, Trenzado JL, Varela LM, Cabeza O, Segade L. Influence of Small Quantities of Water on the Physical Properties of Alkylammonium Nitrate Ionic Liquids. Int J Mol Sci 2021; 22:7334. [PMID: 34298957 PMCID: PMC8306069 DOI: 10.3390/ijms22147334] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2021] [Revised: 06/28/2021] [Accepted: 07/02/2021] [Indexed: 11/16/2022] Open
Abstract
This paper presents a comprehensive study of two alkylammonium nitrate ionic liquids. As part of this family of materials, mainly ethylammonium nitrate (EAN) and also propylammonium nitrate (PAN) have attracted a great deal of attention during the last decades due to their potential applications in many fields. Although there have been numerous publications focused on the measurement of their physical properties, a great dispersion can be observed in the results obtained for the same magnitude. One of the critical points to be taken into account in their physical characterization is their water content. Thus, the main objective of this work was to determine the degree of influence of the presence of small quantities of water in EAN and PAN on the measurement of density, viscosity, electrical conductivity, refractive index and surface tension. For this purpose, the first three properties were determined in samples of EAN and PAN with water contents below 30,000 ppm in a wide range of temperatures, between 5 and 95 °C, while the last two were obtained at 25 °C. As a result of this study, it has been concluded that the presence of water is critical in those physical properties that involve mass or charge transport processes, resulting in the finding that the absolute value of the average percentage change in both viscosity and electrical conductivity is above 40%. Meanwhile, refractive index (≤0.3%), density (≤0.5%) and surface tension (≤2%) present much less significant changes.
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Affiliation(s)
- David Ausín
- Departamento de Física, Facultade de Ciencias, Campus da Zapateira, Universidade da Coruña, 15071 A Coruña, Spain; (D.A.); (O.C.)
| | - Juan J. Parajó
- Grupo de Nanomateriais, Fotónica e Materia Branda, Departamento de Física de Partículas y Departamento de Física Aplicada, Universidade de Santiago de Compostela, Campus Vida s/n, 15782 Santiago de Compostela, Spain; (J.J.P.); (L.M.V.)
- Departamento de Química e Bioquímica, CIQUP-Centro de Investigaçao em Química da Universidade do Porto, Universidade do Porto, P-4169-007 Porto, Portugal
| | - José L. Trenzado
- Departamento de Física, Universidad de Las Palmas de Gran Canaria, 35017 Las Palmas Gran Canaria, Spain;
| | - Luis M. Varela
- Grupo de Nanomateriais, Fotónica e Materia Branda, Departamento de Física de Partículas y Departamento de Física Aplicada, Universidade de Santiago de Compostela, Campus Vida s/n, 15782 Santiago de Compostela, Spain; (J.J.P.); (L.M.V.)
| | - Oscar Cabeza
- Departamento de Física, Facultade de Ciencias, Campus da Zapateira, Universidade da Coruña, 15071 A Coruña, Spain; (D.A.); (O.C.)
| | - Luisa Segade
- Departamento de Física, Facultade de Ciencias, Campus da Zapateira, Universidade da Coruña, 15071 A Coruña, Spain; (D.A.); (O.C.)
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Koutsoukos S, Philippi F, Malaret F, Welton T. A review on machine learning algorithms for the ionic liquid chemical space. Chem Sci 2021; 12:6820-6843. [PMID: 34123314 PMCID: PMC8153233 DOI: 10.1039/d1sc01000j] [Citation(s) in RCA: 49] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2021] [Accepted: 04/28/2021] [Indexed: 01/05/2023] Open
Abstract
There are thousands of papers published every year investigating the properties and possible applications of ionic liquids. Industrial use of these exceptional fluids requires adequate understanding of their physical properties, in order to create the ionic liquid that will optimally suit the application. Computational property prediction arose from the urgent need to minimise the time and cost that would be required to experimentally test different combinations of ions. This review discusses the use of machine learning algorithms as property prediction tools for ionic liquids (either as standalone methods or in conjunction with molecular dynamics simulations), presents common problems of training datasets and proposes ways that could lead to more accurate and efficient models.
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Affiliation(s)
- Spyridon Koutsoukos
- Department of Chemistry, Molecular Sciences Research Hub, Imperial College London White City Campus London W12 0BZ UK
| | - Frederik Philippi
- Department of Chemistry, Molecular Sciences Research Hub, Imperial College London White City Campus London W12 0BZ UK
| | - Francisco Malaret
- Department of Chemical Engineering, Imperial College London South Kensington Campus London SW7 2AZ UK
| | - Tom Welton
- Department of Chemistry, Molecular Sciences Research Hub, Imperial College London White City Campus London W12 0BZ UK
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7
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Greaves TL, Schaffarczyk McHale KS, Burkart-Radke RF, Harper JB, Le TC. Machine learning approaches to understand and predict rate constants for organic processes in mixtures containing ionic liquids. Phys Chem Chem Phys 2021; 23:2742-2752. [PMID: 33496292 DOI: 10.1039/d0cp04227g] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
The ability to tailor the constituent ions in ionic liquids (ILs) is highly advantageous as it provides access to solvents with a range of physicochemical properties. However, this benefit also leads to large compositional spaces that need to be explored to optimise systems, often involving time consuming experimental work. The use of machine learning methods is an effective way to gain insight based on existing data, to develop structure-property relationships and to allow the prediction of ionic liquid properties. Here we have applied machine learning models to experimentally determined rate constants of a representative organic process (the reaction of pyridine with benzyl bromide) in IL-acetonitrile mixtures. Multiple linear regression (MLREM) and artificial neural networks (BRANNLP) were both able to model the data well. The MLREM model was able to identify the structural features on the cations and anions that had the greatest effect on the rate constant. Secondly, predictive MLREM and BRANNLP models were developed from the full initial set of rate constant data. From these models, a large number of predictions (>9000) of rate constant were made for mixtures of different ionic liquids, at different proportions of ionic liquid and molecular solvent, at different temperatures. A selection of these predictions were tested experimentally, including through the preparation of novel ionic liquids, with overall good agreement between the predicted and experimental data. This study highlights the benefits of using machine learning methods on kinetic data in ionic liquid mixtures to enable the development of rigorous structure-property relationships across multiple variables simultaneously, and to predict properties of new ILs and experimental conditions.
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Affiliation(s)
- Tamar L Greaves
- College of Science Engineering and Health, RMIT University, Melbourne, VIC 3001, Australia.
| | | | | | - Jason B Harper
- School of Chemistry, University of New South Wales, Sydney, NSW 2052, Australia.
| | - Tu C Le
- College of Science Engineering and Health, RMIT University, Melbourne, VIC 3001, Australia.
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8
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Yalcin D, Drummond CJ, Greaves TL. Lyotropic liquid crystal phase behavior of a cationic amphiphile in aqueous and non-stoichiometric protic ionic liquid mixtures. SOFT MATTER 2020; 16:9456-9470. [PMID: 32966534 DOI: 10.1039/d0sm01298j] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Protic ionic liquids (PILs) are the largest and most tailorable known class of non-aqueous solvents which possess the ability to support amphiphile self-assembly. However, little is known about the effect of solvent additives on this ability. In this study, the lyotropic liquid crystal phase (LLCP) behavior of the cationic surfactant cetyltrimethylammonium bromide (CTAB) was investigated in the model PILs of ethylammonium nitrate (EAN) and ethanolammonium nitrate (EtAN), and derived multi-component solvent systems containing them to determine phase formation and diversity with changing solvent composition. The solvent systems were composed of water, nitric acid and ethylamine (or ethanolamine), with 26 unique compositions for each PIL covering the apparent pH and ionicity ranges of 0-13.5 and 0-11 M, respectively. The LLCPs were studied using cross polarized optical microscopy (CPOM) and small and wide-angle X-ray scattering (SAXS/WAXS). Partial phase diagrams were constructed for CTAB concentrations of 50 wt% and 70 wt% in the temperature range of 25 °C to 75 °C to characterise the effect of surfactant concentration and temperature on the LLCPs in each solvent environment. Normal micellar (L1), hexagonal (H1) and bicontinuous cubic (V1) phases were identified at both surfactant concentrations, and from temperatures as low as 35 °C, with large variations dependent on the solvent composition. The thermal stability and diversity of phases were greater and broader in solvent compositions with excess precursor amines present compared to those in the neat PILs. In acid-rich solvent combinations, the same phase diversity was found, though with reduced onset temperatures of phase formation; however, some structural changes were observed which were attributed to oxidation/decomposition of CTAB in a nitric acid environment. This study showed that the ability of PIL solutions to support amphiphile self-assembly can readily be tuned, and that the ability of PILs to promote amphiphile self-assembly is robust, even with other solvent species present.
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Affiliation(s)
- Dilek Yalcin
- School of Science, College of Science, Engineering and Health, RMIT University, GPO Box 2476, Melbourne, Victoria 3001, Australia.
| | - Calum J Drummond
- School of Science, College of Science, Engineering and Health, RMIT University, GPO Box 2476, Melbourne, Victoria 3001, Australia.
| | - Tamar L Greaves
- School of Science, College of Science, Engineering and Health, RMIT University, GPO Box 2476, Melbourne, Victoria 3001, Australia.
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9
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Warr GG, Atkin R. Solvophobicity and amphiphilic self-assembly in neoteric and nanostructured solvents. Curr Opin Colloid Interface Sci 2020. [DOI: 10.1016/j.cocis.2019.12.009] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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10
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Yalcin D, Drummond CJ, Greaves TL. Solvation properties of protic ionic liquids and molecular solvents. Phys Chem Chem Phys 2020; 22:114-128. [DOI: 10.1039/c9cp05711k] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Ionic liquids (ILs) are highly tailorable solvents with many potential applications. Knowledge about their solvation properties is highly beneficial in the utilization of ILs for specific tasks, though for many ILs this is currently unknown.
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Affiliation(s)
- Dilek Yalcin
- School of Science
- College of Science
- Engineering and Health
- RMIT University
- Melbourne
| | - Calum J. Drummond
- School of Science
- College of Science
- Engineering and Health
- RMIT University
- Melbourne
| | - Tamar L. Greaves
- School of Science
- College of Science
- Engineering and Health
- RMIT University
- Melbourne
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11
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Yalcin D, Christofferson AJ, Drummond CJ, Greaves TL. Solvation properties of protic ionic liquid–molecular solvent mixtures. Phys Chem Chem Phys 2020; 22:10995-11011. [DOI: 10.1039/d0cp00201a] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
In this study, we have investigated the solvation properties of binary mixtures of PILs with molecular solvents. The selected binary solvent systems are the PILs ethylammonium nitrate (EAN) and propylammonium nitrate (PAN) combined with either water, methanol, acetonitrile or DMSO.
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Affiliation(s)
- Dilek Yalcin
- School of Science
- College of Science
- Engineering and Health
- RMIT University
- Melbourne
| | | | - Calum J. Drummond
- School of Science
- College of Science
- Engineering and Health
- RMIT University
- Melbourne
| | - Tamar L. Greaves
- School of Science
- College of Science
- Engineering and Health
- RMIT University
- Melbourne
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12
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Yalcin D, Le TC, Drummond CJ, Greaves TL. Machine Learning Approaches for Further Developing the Understanding of the Property Trends Observed in Protic Ionic Liquid Containing Solvents. J Phys Chem B 2019; 123:4085-4097. [DOI: 10.1021/acs.jpcb.9b02072] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Dilek Yalcin
- School of Science, College of Science, Engineering and Health, RMIT University, GPO Box 2476, Melbourne, Victoria 3001, Australia
| | - Tu C. Le
- School of Engineering, College of Science, Engineering and Health, RMIT University, GPO Box 2476, Melbourne, Victoria 3001, Australia
| | - Calum J. Drummond
- School of Science, College of Science, Engineering and Health, RMIT University, GPO Box 2476, Melbourne, Victoria 3001, Australia
| | - Tamar L. Greaves
- School of Science, College of Science, Engineering and Health, RMIT University, GPO Box 2476, Melbourne, Victoria 3001, Australia
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