1
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Haake M, Reuillard B, Chavarot-Kerlidou M, Costentin C, Artero V. Proton Relays in Molecular Catalysis for Hydrogen Evolution and Oxidation: Lessons From the Mimicry of Hydrogenases and Electrochemical Kinetic Analyses. Angew Chem Int Ed Engl 2024; 63:e202413910. [PMID: 39555743 DOI: 10.1002/anie.202413910] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2024] [Indexed: 11/19/2024]
Abstract
The active sites of metalloenzymes involved in small molecules activation often contain pendant bases that act as proton relay promoting proton-coupled electron-transfer processes. Here we focus on hydrogenases and on the reactions they catalyze, i. e. the hydrogen evolution and oxidation reactions. After a short description of these enzymes, we review some of the various biomimetic and bioinspired molecular systems that contain proton relays. We then provide the formal electrochemical framework required to decipher the key role of such proton relay to enhance catalysis in a single direction and discuss the few systems active for H2 evolution for which quantitative kinetic data are available. We finally highlight key parameters required to reach bidirectional catalysis (both hydrogen evolution and hydrogen oxidation catalyzed) and then transition to reversible catalysis (both reactions catalyzed in a narrow potential range) as well as illustrate these features on few systems from the literature.
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Affiliation(s)
- Matthieu Haake
- Univ. Grenoble. Alpes, CNRS, CEA, IRIG, L, aboratoire de Chimie et Biologie des Métaux, 38000, Grenoble, France
| | - Bertrand Reuillard
- Univ. Grenoble. Alpes, CNRS, CEA, IRIG, L, aboratoire de Chimie et Biologie des Métaux, 38000, Grenoble, France
| | - Murielle Chavarot-Kerlidou
- Univ. Grenoble. Alpes, CNRS, CEA, IRIG, L, aboratoire de Chimie et Biologie des Métaux, 38000, Grenoble, France
| | - Cyrille Costentin
- Département de Chimie Moléculaire, Univ. Grenoble. Alpes, CNRS, 38000, Grenoble, France
| | - Vincent Artero
- Univ. Grenoble. Alpes, CNRS, CEA, IRIG, L, aboratoire de Chimie et Biologie des Métaux, 38000, Grenoble, France
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2
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Matczak P, Buday P, Kupfer S, Görls H, Mlostoń G, Weigand W. Probing the performance of DFT in the structural characterization of [FeFe] hydrogenase models. J Comput Chem 2024. [PMID: 39417365 DOI: 10.1002/jcc.27515] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2024] [Revised: 09/20/2024] [Accepted: 10/01/2024] [Indexed: 10/19/2024]
Abstract
In this work, a series of DFT and DFT-D methods is combined with double-ζ basis sets to benchmark their performance in predicting the structures of five newly synthesized hexacarbonyl diiron complexes with a bridging ligand featuring a μ-S2C3 motif in a ring-containing unit functionalized with aromatic groups. Such complexes have been considered as [FeFe] hydrogenase catalytic site models with potential for eco-friendly energetic applications. According to this assessment, r2SCAN is identified as the density functional recommended for the reliable description of the molecular and crystal structures of the herein studied models. However, the butterfly (μ-S)2Fe2 core of the models demonstrates a minor deformation of its optimized geometry obtained from both molecular and periodic calculations. The FeFe bond length is slightly underestimated while the FeS bonds tend to be too long. Adding the D3(BJ) correction to r2SCAN does not lead to any improvement in the calculated structures.
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Affiliation(s)
- Piotr Matczak
- Department of Physical Chemistry, Faculty of Chemistry, University of Lodz, Lodz, Poland
| | - Philipp Buday
- Institute of Inorganic and Analytical Chemistry, Friedrich Schiller University Jena, Jena, Germany
| | - Stephan Kupfer
- Institute of Physical Chemistry, Friedrich Schiller University Jena, Jena, Germany
| | - Helmar Görls
- Institute of Inorganic and Analytical Chemistry, Friedrich Schiller University Jena, Jena, Germany
| | - Grzegorz Mlostoń
- Department of Organic and Applied Chemistry, Faculty of Chemistry, University of Lodz, Lodz, Poland
| | - Wolfgang Weigand
- Institute of Inorganic and Analytical Chemistry, Friedrich Schiller University Jena, Jena, Germany
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3
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Gao Y, Wang SJ, Guo Z, Wang YZ, Qu YP, Zhao PH. Covalent versus noncovalent attachments of [FeFe]‑hydrogenase models onto carbon nanotubes for aqueous hydrogen evolution reaction. J Inorg Biochem 2024; 259:112665. [PMID: 39018746 DOI: 10.1016/j.jinorgbio.2024.112665] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2024] [Revised: 07/02/2024] [Accepted: 07/12/2024] [Indexed: 07/19/2024]
Abstract
In an effort to develop the biomimetic chemistry of [FeFe]‑hydrogenases for catalytic hydrogen evolution reaction (HER) in aqueous environment, we herein report the integrations of diiron dithiolate complexes into carbon nanotubes (CNTs) through three different strategies and compare the electrochemical HER performances of the as-resulted 2Fe2S/CNT hybrids in neutral aqueous medium. That is, three new diiron dithiolate complexes [{(μ-SCH2)2N(C6H4CH2C(O)R)}Fe2(CO)6] (R = N-oxylphthalimide (1), NHCH2pyrene (2), and NHCH2Ph (3)) were prepared and could be further grafted covalently to CNTs via an amide bond (this 2Fe2S/CNT hybrid is labeled as H1) as well as immobilized noncovalently to CNTs via π-π stacking interaction (H2) or via simple physisorption (H3). Meanwhile, the molecular structures of 1-3 are determined by elemental analysis and spectroscopic as well as crystallographic techniques, whereas the structures and morphologies of H1-H3 are characterized by various spectroscopies and scanning electronic microscopy. Further, the electrocatalytic HER activity trend of H1 > H2 ≈ H3 is observed in 0.1 M phosphate buffer solution (pH = 7) through different electrochemical measurements, whereas the degradation processes of H1-H3 lead to their electrocatalytic deactivation in the long-term electrolysis as proposed by post operando analysis. Thus, this work is significant to extend the potential application of carbon electrode materials engineered with diiron molecular complexes as heterogeneous HER electrocatalysts for water splitting to hydrogen.
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Affiliation(s)
- Yan Gao
- School of Materials Science and Engineering, North University of China, Taiyuan 030051, PR China
| | - Shao-Jie Wang
- School of Materials Science and Engineering, North University of China, Taiyuan 030051, PR China
| | - Zhen Guo
- School of Materials Science and Engineering, North University of China, Taiyuan 030051, PR China
| | - Yan-Zhong Wang
- School of Materials Science and Engineering, North University of China, Taiyuan 030051, PR China
| | - Yong-Ping Qu
- School of Materials Science and Engineering, North University of China, Taiyuan 030051, PR China
| | - Pei-Hua Zhao
- School of Materials Science and Engineering, North University of China, Taiyuan 030051, PR China.
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4
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Pagnier A, Balci B, Shepard EM, Yang H, Drena A, Holliday GL, Hoffman BM, Broderick WE, Broderick JB. Role of ammonia-lyases in the synthesis of the dithiomethylamine ligand during [FeFe]-hydrogenase maturation. J Biol Chem 2024; 300:107760. [PMID: 39260698 DOI: 10.1016/j.jbc.2024.107760] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2024] [Revised: 08/23/2024] [Accepted: 09/03/2024] [Indexed: 09/13/2024] Open
Abstract
The generation of an active [FeFe]-hydrogenase requires the synthesis of a complex metal center, the H-cluster, by three dedicated maturases: the radical S-adenosyl-l-methionine (SAM) enzymes HydE and HydG, and the GTPase HydF. A key step of [FeFe]-hydrogenase maturation is the synthesis of the dithiomethylamine (DTMA) bridging ligand, a process recently shown to involve the aminomethyl-lipoyl-H-protein from the glycine cleavage system, whose methylamine group originates from serine and ammonium. Here we use functional assays together with electron paramagnetic resonance and electron-nuclear double resonance spectroscopies to show that serine or aspartate together with their respective ammonia-lyase enzymes can provide the nitrogen for DTMA biosynthesis during in vitro [FeFe]-hydrogenase maturation. We also report bioinformatic analysis of the hyd operon, revealing a strong association with genes encoding ammonia-lyases, suggesting important biochemical and metabolic connections. Together, our results provide evidence that ammonia-lyases play an important role in [FeFe]-hydrogenase maturation by delivering the ammonium required for dithiomethylamine ligand synthesis.
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Affiliation(s)
- Adrien Pagnier
- Department of Chemistry and Biochemistry, Montana State University, Bozeman, Montana, USA
| | - Batuhan Balci
- Department of Chemistry and Biochemistry, Montana State University, Bozeman, Montana, USA
| | - Eric M Shepard
- Department of Chemistry and Biochemistry, Montana State University, Bozeman, Montana, USA
| | - Hao Yang
- Department of Chemistry, Northwestern University, Evanston, Illinois, USA
| | - Alex Drena
- Department of Chemistry, Northwestern University, Evanston, Illinois, USA
| | - Gemma L Holliday
- Digitisation, Pharmaceutical Science, Biopharmaceuticals R&D, AstraZeneca, Macclesfield, United Kingdom
| | - Brian M Hoffman
- Department of Chemistry, Northwestern University, Evanston, Illinois, USA
| | - William E Broderick
- Department of Chemistry and Biochemistry, Montana State University, Bozeman, Montana, USA
| | - Joan B Broderick
- Department of Chemistry and Biochemistry, Montana State University, Bozeman, Montana, USA.
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5
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Liu YC, Chu KT, Wang HR, Lee GH, Tseng MC, Wang CH, Horng YC, Chiang MH. Chloride- and Hydrosulfide-Bound 2Fe Complexes as Models of the Oxygen-Stable State of [FeFe] Hydrogenase. Angew Chem Int Ed Engl 2024; 63:e202408142. [PMID: 38818643 DOI: 10.1002/anie.202408142] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2024] [Revised: 05/28/2024] [Accepted: 05/29/2024] [Indexed: 06/01/2024]
Abstract
[FeFe] hydrogenases demonstrate remarkable catalytic efficiency in hydrogen evolution and oxidation processes. However, susceptibility of these enzymes to oxygen-induced degradation impedes their practical deployment in hydrogen-production devices and fuel cells. Recent investigations into the oxygen-stable (Hinact) state of the H-cluster revealed its inherent capacity to resist oxygen degradation. Herein, we present findings on Cl- and SH-bound [2Fe-2S] complexes, bearing relevance to the oxygen-stable state within a biological context. A characteristic attribute of these complexes is the terminal Cl-/SH- ligation to the iron center bearing the CO bridge. Structural analysis of the t-Cl demonstrates a striking resemblance to the Hinact state of DdHydAB and CbA5H. The t-Cl/t-SH exhibit reversible oxidation, with both redox species, electronically, being the first biomimetic analogs to the Htrans and Hinact states. These complexes exhibit notable resistance against oxygen-induced decomposition, supporting the potential oxygen-resistant nature of the Htrans and Hinact states. The swift reductive release of the Cl-/SH-group demonstrates its labile and kinetically controlled binding. The findings garnered from these investigations offer valuable insights into properties of the enzymatic O2-stable state, and key factors governing deactivation and reactivation conversion. This work contributes to the advancement of bio-inspired molecular catalysts and the integration of enzymes and artificial catalysts into H2-evolution devices and fuel-cell applications.
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Affiliation(s)
- Yu-Chiao Liu
- Institute of Chemistry, Academia Sinica, Nankang, Taipei, 115, Taiwan
| | - Kai-Ti Chu
- Institute of Chemistry, Academia Sinica, Nankang, Taipei, 115, Taiwan
| | - Hong-Ru Wang
- Institute of Chemistry, Academia Sinica, Nankang, Taipei, 115, Taiwan
| | - Gene-Hsiang Lee
- Instrumentation Center, National Taiwan University, Taipei, 106, Taiwan
| | - Mei-Chun Tseng
- Institute of Chemistry, Academia Sinica, Nankang, Taipei, 115, Taiwan
| | - Cheng-Hsin Wang
- Institute of Chemistry, Academia Sinica, Nankang, Taipei, 115, Taiwan
| | - Yih-Chern Horng
- Department of Chemistry, National Changhua University of Education, Changhua, 500, Taiwan
| | - Ming-Hsi Chiang
- Institute of Chemistry, Academia Sinica, Nankang, Taipei, 115, Taiwan
- Department of Medicinal and Applied Chemistry, Kaohsiung Medical University, Kaohsiung, 807, Taiwan
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6
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Yadav S, Haas R, Boydas EB, Roemelt M, Happe T, Apfel UP, Stripp ST. Oxygen sensitivity of [FeFe]-hydrogenase: a comparative study of active site mimics inside vs. outside the enzyme. Phys Chem Chem Phys 2024; 26:19105-19116. [PMID: 38957092 DOI: 10.1039/d3cp06048a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/04/2024]
Abstract
[FeFe]-hydrogenase is nature's most efficient proton reducing and H2-oxidizing enzyme. However, biotechnological applications are hampered by the O2 sensitivity of this metalloenzyme, and the mechanism of aerobic deactivation is not well understood. Here, we explore the oxygen sensitivity of four mimics of the organometallic active site cofactor of [FeFe]-hydrogenase, [Fe2(adt)(CO)6-x(CN)x]x- and [Fe2(pdt)(CO)6-x(CN)x]x- (x = 1, 2) as well as the corresponding cofactor variants of the enzyme by means of infrared, Mössbauer, and NMR spectroscopy. Additionally, we describe a straightforward synthetic recipe for the active site precursor complex Fe2(adt)(CO)6. Our data indicate that the aminodithiolate (adt) complex, which is the synthetic precursor of the natural active site cofactor, is most oxygen sensitive. This observation highlights the significance of proton transfer in aerobic deactivation, and supported by DFT calculations facilitates an identification of the responsible reactive oxygen species (ROS). Moreover, we show that the ligand environment of the iron ions critically influences the reactivity with O2 and ROS like superoxide and H2O2 as the oxygen sensitivity increases with the exchange of ligands from CO to CN-. The trends in aerobic deactivation observed for the model complexes are in line with the respective enzyme variants. Based on experimental and computational data, a model for the initial reaction of [FeFe]-hydrogenase with O2 is developed. Our study underscores the relevance of model systems in understanding biocatalysis and validates their potential as important tools for elucidating the chemistry of oxygen-induced deactivation of [FeFe]-hydrogenase.
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Affiliation(s)
- Shanika Yadav
- Inorganic Chemistry I, Ruhr-Universität Bochum, Universitätsstraße 150, 44801 Bochum, Germany.
| | - Rieke Haas
- Faculty of Biology & Biotechnology, Ruhr-Universität Bochum, Universitätsstrasse 150, 44801 Bochum, Germany
| | - Esma Birsen Boydas
- Institute of Chemistry, Humboldt-Universität zu Berlin, Brook-Taylor Str.2, 12489, Berlin, Germany
| | - Michael Roemelt
- Institute of Chemistry, Humboldt-Universität zu Berlin, Brook-Taylor Str.2, 12489, Berlin, Germany
| | - Thomas Happe
- Faculty of Biology & Biotechnology, Ruhr-Universität Bochum, Universitätsstrasse 150, 44801 Bochum, Germany
| | - Ulf-Peter Apfel
- Inorganic Chemistry I, Ruhr-Universität Bochum, Universitätsstraße 150, 44801 Bochum, Germany.
- Department of Electrosynthesi, Fraunhofer UMSICHT, Osterfelder Str. 3, 46047 Oberhausen, Germany
| | - Sven T Stripp
- Biophysical Chemistry, Technical University Berlin, Strasse des 17. Juni 124, 10623 Berlin, Germany.
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7
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Hobballah A, Elleouet C, Schollhammer P. Triiron Complexes Featuring Azadiphosphine Related to the Active Site of [FeFe]-Hydrogenases: Their Redox Behavior and Protonation. Molecules 2024; 29:3270. [PMID: 39064850 PMCID: PMC11279172 DOI: 10.3390/molecules29143270] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2024] [Revised: 07/04/2024] [Accepted: 07/05/2024] [Indexed: 07/28/2024] Open
Abstract
The design of iron clusters featuring a bimetallic core and several protonation sites in the second coordination sphere of the metal centers is important for modeling the activity of polymetallic active sites such as the H-cluster of [FeFe]-hydrogenases. For this purpose, the syntheses of complexes [Fe3(CO)5(κ2-PPh2NR2)(μ-pdt)2] (R = Ph (1), Bn (2)) and [Fe3(CO)5(κ2-PPh2NR2)(μ-adtBn)(μ-pdt)] (R = Ph (3), Bn (4)) were carried out by reacting hexacarbonyl precursors [Fe2(CO)6(µ-xdt)] (xdt = pdt (propanedithiolate), adtBn (azadithiolate) with mononuclear complexes [Fe(κ2-pdt)(CO)2(κ2-PPh2NR2)] (PPh2NR2 = (PPhCH2NRCH2)2, R = Ph, Bn) in order to introduce amine functions, through well-known PPh2NR2 diphosphine, into the vicinity of the triiron core. The investigation of the reactivity of these triiron species towards the proton (in the presence of CF3SO3H) and the influence of the pendant amines on the redox properties of these complexes were explored using spectroscopic and electrochemical methods. The protonation sites in such triiron clusters and their relationships were identified. The orientation of the first and second protonation processes depends on the arrangement of the second coordination sphere. The similarities and differences, due to the extended metal nuclearity, with their dinuclear counterparts [Fe2(CO)4(κ2-PPh2NR2)(μ-pdt)], were highlighted.
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Affiliation(s)
| | - Catherine Elleouet
- Laboratoire de Chimie, Electrochimie Moléculaire et Chimie Analytique, UMR 6521 CNRS-Université de Bretagne Occidentale, CS 93837–6 Avenue Le Gorgeu, CEDEX 3, 29238 Brest, France;
| | - Philippe Schollhammer
- Laboratoire de Chimie, Electrochimie Moléculaire et Chimie Analytique, UMR 6521 CNRS-Université de Bretagne Occidentale, CS 93837–6 Avenue Le Gorgeu, CEDEX 3, 29238 Brest, France;
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8
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Greening C, Cabotaje PR, Valentin Alvarado LE, Leung PM, Land H, Rodrigues-Oliveira T, Ponce-Toledo RI, Senger M, Klamke MA, Milton M, Lappan R, Mullen S, West-Roberts J, Mao J, Song J, Schoelmerich M, Stairs CW, Schleper C, Grinter R, Spang A, Banfield JF, Berggren G. Minimal and hybrid hydrogenases are active from archaea. Cell 2024; 187:3357-3372.e19. [PMID: 38866018 PMCID: PMC11216029 DOI: 10.1016/j.cell.2024.05.032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2023] [Revised: 04/12/2024] [Accepted: 05/16/2024] [Indexed: 06/14/2024]
Abstract
Microbial hydrogen (H2) cycling underpins the diversity and functionality of diverse anoxic ecosystems. Among the three evolutionarily distinct hydrogenase superfamilies responsible, [FeFe] hydrogenases were thought to be restricted to bacteria and eukaryotes. Here, we show that anaerobic archaea encode diverse, active, and ancient lineages of [FeFe] hydrogenases through combining analysis of existing and new genomes with extensive biochemical experiments. [FeFe] hydrogenases are encoded by genomes of nine archaeal phyla and expressed by H2-producing Asgard archaeon cultures. We report an ultraminimal hydrogenase in DPANN archaea that binds the catalytic H-cluster and produces H2. Moreover, we identify and characterize remarkable hybrid complexes formed through the fusion of [FeFe] and [NiFe] hydrogenases in ten other archaeal orders. Phylogenetic analysis and structural modeling suggest a deep evolutionary history of hybrid hydrogenases. These findings reveal new metabolic adaptations of archaea, streamlined H2 catalysts for biotechnological development, and a surprisingly intertwined evolutionary history between the two major H2-metabolizing enzymes.
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Affiliation(s)
- Chris Greening
- Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia; SAEF: Securing Antarctica's Environmental Future, Monash University, Clayton, VIC, Australia.
| | - Princess R Cabotaje
- Department of Chemistry - Ångström Laboratory, Uppsala University, Uppsala, Sweden
| | - Luis E Valentin Alvarado
- Department of Earth and Planetary Science, University of California, Berkeley, Berkeley, CA 94709, USA
| | - Pok Man Leung
- Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia; SAEF: Securing Antarctica's Environmental Future, Monash University, Clayton, VIC, Australia
| | - Henrik Land
- Department of Chemistry - Ångström Laboratory, Uppsala University, Uppsala, Sweden
| | - Thiago Rodrigues-Oliveira
- Department of Functional and Evolutionary Ecology, Archaea Biology and Ecogenomics Unit, University of Vienna, Vienna, Austria
| | - Rafael I Ponce-Toledo
- Department of Functional and Evolutionary Ecology, Archaea Biology and Ecogenomics Unit, University of Vienna, Vienna, Austria
| | - Moritz Senger
- Department of Chemistry - Ångström Laboratory, Uppsala University, Uppsala, Sweden
| | - Max A Klamke
- Department of Chemistry - Ångström Laboratory, Uppsala University, Uppsala, Sweden
| | - Michael Milton
- Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia
| | - Rachael Lappan
- Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia; SAEF: Securing Antarctica's Environmental Future, Monash University, Clayton, VIC, Australia
| | - Susan Mullen
- Department of Earth and Planetary Science, University of California, Berkeley, Berkeley, CA 94709, USA
| | - Jacob West-Roberts
- Department of Earth and Planetary Science, University of California, Berkeley, Berkeley, CA 94709, USA
| | - Jie Mao
- Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia; Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia
| | - Jiangning Song
- Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia
| | - Marie Schoelmerich
- Department of Earth and Planetary Science, University of California, Berkeley, Berkeley, CA 94709, USA
| | | | - Christa Schleper
- Department of Functional and Evolutionary Ecology, Archaea Biology and Ecogenomics Unit, University of Vienna, Vienna, Austria
| | - Rhys Grinter
- Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia.
| | - Anja Spang
- Department of Marine Microbiology and Biogeochemistry, Royal Netherlands Institute for Sea Research, Den Hoorn, the Netherlands; Department of Evolutionary and Population Biology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, the Netherlands.
| | - Jillian F Banfield
- Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia; Department of Earth and Planetary Science, University of California, Berkeley, Berkeley, CA 94709, USA.
| | - Gustav Berggren
- Department of Chemistry - Ångström Laboratory, Uppsala University, Uppsala, Sweden.
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9
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Yu X, Rao G, Britt RD, Rauchfuss TB. Final Stages in the Biosynthesis of the [FeFe]-Hydrogenase Active Site. Angew Chem Int Ed Engl 2024; 63:e202404044. [PMID: 38551577 PMCID: PMC11253240 DOI: 10.1002/anie.202404044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2024] [Indexed: 04/19/2024]
Abstract
The paper aims to elucidate the final stages in the biosynthesis of the [2Fe]H active site of the [FeFe]-hydrogenases. The recently hypothesized intermediate [Fe2(SCH2NH2)2(CN)2(CO)4]2- ([1]2-) was prepared by a multistep route from [Fe2(S2)(CN)(CO)5]-. The following synthetic intermediates were characterized in order: [Fe2(SCH2NHFmoc)2(CNBEt3)(CO)5]-, [Fe2(SCH2NHFmoc)2(CN)-(CO)5]-, and [Fe2(SCH2NHFmoc)2(CN)2(CO)4]2-, where Fmoc is fluorenylmethoxycarbonyl). Derivatives of these anions include [K(18-crown-6)]+, PPh4 + and PPN+ salts as well as the 13CD2-isotopologues. These Fe2 species exist as a mixture of two isomers attributed to diequatorial (ee) and axial-equatorial (ae) stereochemistry at sulfur. In vitro experiments demonstrate that [1]2- maturates HydA1 in the presence of HydF and a cocktail of reagents. HydA1 can also be maturated using a highly simplified cocktail, omitting HydF and other proteins. This result is consistent with HydA1 participating in the maturation process and refines the roles of HydF.
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Affiliation(s)
- Xin Yu
- School of Chemical Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA
| | - Guodong Rao
- Department of Chemistry, University of California, Davis, CA 95616, USA
| | - R. David Britt
- Department of Chemistry, University of California, Davis, CA 95616, USA
| | - Thomas B. Rauchfuss
- School of Chemical Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA
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10
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Mihajlović E, Biancalana L, Jelača S, Chiaverini L, Dojčinović B, Dunđerović D, Zacchini S, Mijatović S, Maksimović-Ivanić D, Marchetti F. FETPY: a Diiron(I) Thio-Carbyne Complex with Prominent Anticancer Activity In Vitro and In Vivo. J Med Chem 2024; 67:7553-7568. [PMID: 38639401 DOI: 10.1021/acs.jmedchem.4c00377] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/20/2024]
Abstract
FETPY, an organo-diiron(I) complex, showed strong cytotoxicity across a panel of human and mouse cancer cell lines, combined with an outstanding selectivity compared to nonmalignant cells. Enhanced iron uptake in aggressive, low-differentiated cell lines, caused membrane lipid peroxidation, which resulted in ferroptosis in human ovarian cancer cells. FETPY induced significant morphological changes in murine B16-F1 and B16-F10 melanoma cells, leading to senescence and/or trans-differentiation into Schwann-like cells, thus significantly reducing their tumorigenic potential. Additionally, FETPY substantially suppressed tumor growth in low- and high-grade syngeneic melanoma models when administered in a therapeutic regimen. FETPY is featured by satisfactory water solubility (millimolar range), an amphiphilic character (Log Pow = -0.17), and excellent stability in a biological medium (DMEM). These important requisites for drug development are rarely met in iron complexes investigated so far as possible anticancer agents. Overall, FETPY holds promise as a safe and potent targeted antitumor agent.
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Affiliation(s)
- Ekatarina Mihajlović
- Department of Immunology, Institute for Biological Research "Siniša Stanković" - National Institute of the Republic of Serbia, University of Belgrade, Belgrade 11108, Serbia
| | - Lorenzo Biancalana
- Department of Chemistry and Industrial Chemistry, University of Pisa, Via Giuseppe Moruzzi 13, Pisa I-56124, Italy
| | - Sanja Jelača
- Department of Immunology, Institute for Biological Research "Siniša Stanković" - National Institute of the Republic of Serbia, University of Belgrade, Belgrade 11108, Serbia
| | - Lorenzo Chiaverini
- Department of Chemistry and Industrial Chemistry, University of Pisa, Via Giuseppe Moruzzi 13, Pisa I-56124, Italy
| | - Biljana Dojčinović
- Institute of Chemistry, Technology and Metallurgy University of Belgrade, Njegoševa 12, Belgrade 11000, Serbia
| | - Duško Dunđerović
- Institute of Pathology, School of Medicine University of Belgrade, dr Subotića 1, Belgrade 11000, Serbia
| | - Stefano Zacchini
- Department of Industrial Chemistry "Toso Montanari", University of Bologna, Via P. Gobetti 85, Bologna I-40129, Italy
| | - Sanja Mijatović
- Department of Immunology, Institute for Biological Research "Siniša Stanković" - National Institute of the Republic of Serbia, University of Belgrade, Belgrade 11108, Serbia
| | - Danijela Maksimović-Ivanić
- Department of Immunology, Institute for Biological Research "Siniša Stanković" - National Institute of the Republic of Serbia, University of Belgrade, Belgrade 11108, Serbia
| | - Fabio Marchetti
- Department of Chemistry and Industrial Chemistry, University of Pisa, Via Giuseppe Moruzzi 13, Pisa I-56124, Italy
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11
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Isegawa M. Metal- and ligand-substitution-induced changes in the kinetics and thermodynamics of hydrogen activation and hydricity in a dinuclear metal complex. Dalton Trans 2024; 53:5966-5978. [PMID: 38462977 DOI: 10.1039/d4dt00361f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/12/2024]
Abstract
Catalytic function in organometallic complexes is achieved by carefully selecting their central metals and ligands. In this study, the effects of a metal and a ligand on the kinetics and thermodynamics of hydrogen activation, hydricity degree of the hydride complex, and susceptibility to electronic oxidation in bioinspired NiFe complexes, [NiIIX FeII(Cl)(CO)Y]+ ([NiFe(Cl)(CO)]+; X = N,N'-diethyl-3,7-diazanonane-1,9-dithiolato and Y = 1,2-bis(diphenylphosphino)ethane), were investigated. The density functional theory calculations revealed that the following order thermodynamically favored hydrogen activation: [NiFe(CO)]2+ > [NiRu(CO)]2+ > [NiFe(CNMe)]2+ ∼ [PdRu(CO)]2+ ∼ [PdFe(CO)]2+ ≫ [NiFe(NCS)]+. Moreover, the reverse order thermodynamically favored the hydricity degree.
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Affiliation(s)
- Miho Isegawa
- International Institute for Carbon-Neutral Energy Research (WPI-I2CNER), Kyushu University, 744 Moto-oka, Nishi-ku, Fukuoka, 819-0395, Japan.
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12
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Bresciani G, Ciancaleoni G, Zacchini S, Biancalana L, Pampaloni G, Funaioli T, Marchetti F. Mixed valence triiron complexes from the conjugation of [Fe IFe I] and [Fe II] complexes via intermolecular carbyne/alkyne coupling. Dalton Trans 2024; 53:4299-4313. [PMID: 38345429 DOI: 10.1039/d4dt00079j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/28/2024]
Abstract
We present a new synthetic strategy for obtaining mixed-valence triiron complexes where the metal centers are bridged by a novel, highly functionalized hydrocarbyl ligand. The alkynyl-vinyliminium complexes [Fe2Cp2(CO)(μ-CO){μ-η1:η3-C(X-CCH)CHCNMe2}]CF3SO3 (X = 4-C6H4, [2a1]CF3SO3; X = (CH2)3, [2a2]CF3SO3) were synthesized in almost quantitative yields from the aminocarbyne precursor [Fe2Cp2(CO)2(μ-CO){μ-CNMe2}]CF3SO3, [1a]CF3SO3, and the di-alkynes HCC-X-CCH. Then, the ferracycle [Fe(Cp)(CO){C(NMe2)CHC(4-C6H4CCH)C(O)}], 4a1, was produced in 47% yield from the cleavage of [2a1]CF3SO3 promoted by pyrrolidine. Subsequent reactions of the acetonitrile adducts [Fe2Cp2(CO)(μ-CO)(NCMe){μ-CNMe(R)}]CF3SO3 (R = Me, [1aACN]CF3SO3; R = Xyl, [1bACN]CF3SO3) ([FeIFeI]) with 4a1 ([FeII]) at room temperature resulted in the formation of [FeIFeIFeII] complexes [Fe2Cp2(CO)(μ-CO){μ-η1:η3-C(X-CCHC(NMe2)FeCp(CO)CO)CHCNMe(R)}]CF3SO3 (R = Me, [5a1]CF3SO3; R = Xyl, [5b1]CF3SO3) in yields ranging from 56% to 64%. The new products were characterized by IR and multinuclear NMR spectroscopy, and the structures of [2a2]CF3SO3 and 4a1 were confirmed by single crystal X-ray diffraction. Cyclic voltammetry and spectroelectrochemical studies on [5a1]+ have revealed that reduction and oxidation events occur almost independently at the [FeIFeI] and [FeII] units, respectively. This observation underscores a minimal electronic interaction between the two fragments within the triiron complex. Accordingly, DFT studies pointed out that the HOMO and LUMO orbitals are predominantly localized in the two distinct compartments of [5a1]+.
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Affiliation(s)
- Giulio Bresciani
- University of Pisa, Department of Chemistry and Industrial Chemistry, Via G. Moruzzi 13, I-56124 Pisa, Italy.
- CIRCC, Via Celso Ulpiani 27, I-70126 Bari, Italy
| | - Gianluca Ciancaleoni
- University of Pisa, Department of Chemistry and Industrial Chemistry, Via G. Moruzzi 13, I-56124 Pisa, Italy.
- CIRCC, Via Celso Ulpiani 27, I-70126 Bari, Italy
| | - Stefano Zacchini
- University of Bologna, Department of Industrial Chemistry "Toso Montanari", Viale Risorgimento 4, I-40136 Bologna, Italy
- CIRCC, Via Celso Ulpiani 27, I-70126 Bari, Italy
| | - Lorenzo Biancalana
- University of Pisa, Department of Chemistry and Industrial Chemistry, Via G. Moruzzi 13, I-56124 Pisa, Italy.
- CIRCC, Via Celso Ulpiani 27, I-70126 Bari, Italy
| | - Guido Pampaloni
- University of Pisa, Department of Chemistry and Industrial Chemistry, Via G. Moruzzi 13, I-56124 Pisa, Italy.
- CIRCC, Via Celso Ulpiani 27, I-70126 Bari, Italy
| | - Tiziana Funaioli
- University of Pisa, Department of Chemistry and Industrial Chemistry, Via G. Moruzzi 13, I-56124 Pisa, Italy.
- CIRCC, Via Celso Ulpiani 27, I-70126 Bari, Italy
| | - Fabio Marchetti
- University of Pisa, Department of Chemistry and Industrial Chemistry, Via G. Moruzzi 13, I-56124 Pisa, Italy.
- CIRCC, Via Celso Ulpiani 27, I-70126 Bari, Italy
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13
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Aguado S, García-Álvarez P, Cabeza JA, Casarrubios L, Sierra MA. A cross-metathesis approach for polymetallic [FeFe]-hydrogenase mimics. Dalton Trans 2024; 53:3756-3764. [PMID: 38304983 DOI: 10.1039/d3dt04197b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2024]
Abstract
A method has been developed for synthesizing [FeFe]-H2ase mimics with diverse structures and properties, employing cross-metathesis of olefins. Vinylmetallocenes (5 and 6) and vinyl half-sandwich complexes (10 and 11) have been used as cross-metathesis partners with [FeFe]-H2ase mimics (4, 8, and 9) bearing a double bond in the moiety attached to the ADT-bridge nitrogen. Electrochemical studies of these complexes, encompassing metallocene-type (7a-b, 12a-b, and 13a-b) as well as half-sandwich derivatives (12c and 13c-d), have demonstrated that the introduction of a redox unit has a marginal impact on the reduction potential of these [FeFe]-H2ase mimics. The application of this cross-metathesis approach has allowed the synthesis of [FeFe]-H2ase mimics featuring an Ir(III) electrochemical antenna (16-18) as well as systems having an electron-donor-photosensitizer structure (ED-PS) (23). The electrocatalytic properties of these complexes have been elucidated through electrochemical studies.
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Affiliation(s)
- Sergio Aguado
- Departamento de Química Orgánica, Facultad de Ciencias Químicas, Universidad Complutense, 28040 Madrid, Spain.
- Centro de Innovación en Química Avanzada, (ORFEO-CINQA), Spain
| | - Pablo García-Álvarez
- Departamento de Química Orgánica e Inorgánica. Facultad de Química, Universidad de Oviedo, 33071 Oviedo, Spain
- Centro de Innovación en Química Avanzada, (ORFEO-CINQA), Spain
| | - Javier A Cabeza
- Departamento de Química Orgánica e Inorgánica. Facultad de Química, Universidad de Oviedo, 33071 Oviedo, Spain
- Centro de Innovación en Química Avanzada, (ORFEO-CINQA), Spain
| | - Luis Casarrubios
- Departamento de Química Orgánica, Facultad de Ciencias Químicas, Universidad Complutense, 28040 Madrid, Spain.
- Centro de Innovación en Química Avanzada, (ORFEO-CINQA), Spain
| | - Miguel A Sierra
- Departamento de Química Orgánica, Facultad de Ciencias Químicas, Universidad Complutense, 28040 Madrid, Spain.
- Centro de Innovación en Química Avanzada, (ORFEO-CINQA), Spain
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14
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Nayek A, Dey S, Patra S, Rana A, Serrano PN, George SJ, Cramer SP, Ghosh Dey S, Dey A. Facile electrocatalytic proton reduction by a [Fe-Fe]-hydrogenase bio-inspired synthetic model bearing a terminal CN - ligand. Chem Sci 2024; 15:2167-2180. [PMID: 38332837 PMCID: PMC10848691 DOI: 10.1039/d3sc05397k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Accepted: 12/22/2023] [Indexed: 02/10/2024] Open
Abstract
An azadithiolate bridged CN- bound pentacarbonyl bis-iron complex, mimicking the active site of [Fe-Fe] H2ase is synthesized. The geometric and electronic structure of this complex is elucidated using a combination of EXAFS analysis, infrared and Mössbauer spectroscopy and DFT calculations. The electrochemical investigations show that complex 1 effectively reduces H+ to H2 between pH 0-3 at diffusion-controlled rates (1011 M-1 s-1) i.e. 108 s-1 at pH 3 with an overpotential of 140 mV. Electrochemical analysis and DFT calculations suggests that a CN- ligand increases the pKa of the cluster enabling hydrogen production from its Fe(i)-Fe(0) state at pHs much higher and overpotential much lower than its precursor bis-iron hexacarbonyl model which is active in its Fe(0)-Fe(0) state. The formation of a terminal Fe-H species, evidenced by spectroelectrochemistry in organic solvent, via a rate determining proton coupled electron transfer step and protonation of the adjacent azadithiolate, lowers the kinetic barrier leading to diffusion controlled rates of H2 evolution. The stereo-electronic factors enhance its catalytic rate by 3 order of magnitude relative to a bis-iron hexacarbonyl precursor at the same pH and potential.
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Affiliation(s)
- Abhijit Nayek
- School of Chemical Science, Indian Association for the Cultivation of Science Kolkata 700032 India
| | - Subal Dey
- School of Chemical Science, Indian Association for the Cultivation of Science Kolkata 700032 India
| | - Suman Patra
- School of Chemical Science, Indian Association for the Cultivation of Science Kolkata 700032 India
| | - Atanu Rana
- School of Chemical Science, Indian Association for the Cultivation of Science Kolkata 700032 India
| | - Pauline N Serrano
- Department of Chemistry, University of California Davis CA 94616 USA
| | - Simon J George
- Department of Chemistry, University of California Davis CA 94616 USA
- SETI Institute 339 Bernardo Ave, Suite, 200 Mountain View CA 94043 USA
| | - Stephen P Cramer
- Department of Chemistry, University of California Davis CA 94616 USA
- Physical Biosciences Division, Lawrence Berkeley National Laboratory Berkeley CA 94720 USA
- SETI Institute 339 Bernardo Ave, Suite, 200 Mountain View CA 94043 USA
| | - Somdatta Ghosh Dey
- School of Chemical Science, Indian Association for the Cultivation of Science Kolkata 700032 India
| | - Abhishek Dey
- School of Chemical Science, Indian Association for the Cultivation of Science Kolkata 700032 India
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15
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Xu W, Wu Y, Gu W, Du D, Lin Y, Zhu C. Atomic-level design of metalloenzyme-like active pockets in metal-organic frameworks for bioinspired catalysis. Chem Soc Rev 2024; 53:137-162. [PMID: 38018371 DOI: 10.1039/d3cs00767g] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2023]
Abstract
Natural metalloenzymes with astonishing reaction activity and specificity underpin essential life transformations. Nevertheless, enzymes only operate under mild conditions to keep sophisticated structures active, limiting their potential applications. Artificial metalloenzymes that recapitulate the catalytic activity of enzymes can not only circumvent the enzymatic fragility but also bring versatile functions into practice. Among them, metal-organic frameworks (MOFs) featuring diverse and site-isolated metal sites and supramolecular structures have emerged as promising candidates for metalloenzymes to move toward unparalleled properties and behaviour of enzymes. In this review, we systematically summarize the significant advances in MOF-based metalloenzyme mimics with a special emphasis on active pocket engineering at the atomic level, including primary catalytic sites and secondary coordination spheres. Then, the deep understanding of catalytic mechanisms and their advanced applications are discussed. Finally, a perspective on this emerging frontier research is provided to advance bioinspired catalysis.
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Affiliation(s)
- Weiqing Xu
- National Key Laboratory of Green Pesticide, International Joint Research Center for Intelligent Biosensing Technology and Health, College of Chemistry, Central China Normal University, Wuhan 430079, P. R. China.
| | - Yu Wu
- National Key Laboratory of Green Pesticide, International Joint Research Center for Intelligent Biosensing Technology and Health, College of Chemistry, Central China Normal University, Wuhan 430079, P. R. China.
| | - Wenling Gu
- National Key Laboratory of Green Pesticide, International Joint Research Center for Intelligent Biosensing Technology and Health, College of Chemistry, Central China Normal University, Wuhan 430079, P. R. China.
| | - Dan Du
- School of Mechanical and Materials Engineering, Washington State University, 99164, Pullman, USA.
| | - Yuehe Lin
- School of Mechanical and Materials Engineering, Washington State University, 99164, Pullman, USA.
| | - Chengzhou Zhu
- National Key Laboratory of Green Pesticide, International Joint Research Center for Intelligent Biosensing Technology and Health, College of Chemistry, Central China Normal University, Wuhan 430079, P. R. China.
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16
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Chatelain L, Arrigoni F, Schollhammer P, Zampella G. C-Cl Bond Activation at Rotated vs Unrotated Dinuclear Site Related to [FeFe]-Hydrogenases. Inorg Chem 2023; 62:20913-20918. [PMID: 38047903 DOI: 10.1021/acs.inorgchem.3c03481] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/05/2023]
Abstract
The novel dinuclear complex related to the [FeFe]-hydrogenases active site, [Fe2(μ-pdt)(κ2-dmpe)2(CO)2] (1), is highly reactive toward chlorinated compounds CHxCl4-x (x = 1, 2) affording selectively terminal or bridging chloro diiron isomers through a C-Cl bond activation. DFT calculations suggest a cooperative mechanism involving a formal concerted regioselective chloronium transfer depending on the unrotated or rotated conformation of two isomers of 1.
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Affiliation(s)
- Lucile Chatelain
- UMR CNRS 6521 Chimie, Electrochimie Moléculaires et Chimie Analytique, Université de Bretagne Occidentale, 6 Avenue Victor le Gorgeu, CS93837, Brest-Cedex 3, 29238 Brest, France
| | - Federica Arrigoni
- Department of Biotechnology and Bioscience, University of Milano-Bicocca, Piazza della Scienza 2, 20126 Milan, Italy
| | - Philippe Schollhammer
- UMR CNRS 6521 Chimie, Electrochimie Moléculaires et Chimie Analytique, Université de Bretagne Occidentale, 6 Avenue Victor le Gorgeu, CS93837, Brest-Cedex 3, 29238 Brest, France
| | - Giuseppe Zampella
- Department of Biotechnology and Bioscience, University of Milano-Bicocca, Piazza della Scienza 2, 20126 Milan, Italy
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17
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Guerrero-Almaraz P, Quiroz M, Rodriguez DR, Jana M, Hall MB, Darensbourg MY. Sulfur Lone Pairs Control Topology in Heterotrimetallic Complexes: An Experimental and Theoretical Study. ACS ORGANIC & INORGANIC AU 2023; 3:393-402. [PMID: 38075453 PMCID: PMC10704581 DOI: 10.1021/acsorginorgau.3c00025] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2023] [Revised: 08/25/2023] [Accepted: 08/28/2023] [Indexed: 02/12/2024]
Abstract
Heterotrimetallic complexes with (N2S2)M metallodithiolates, M = Ni2+, [Fe(NO)]2+, and [Co(NO)]2+, as bidentate chelating ligands to a central trans-Cr(NO)(MeCN) unit were characterized as the first members of a new class, NiCrNi, FeCrFe, CoCrCo. The complexes exhibit a cisoid structural topology, ascribed to the stereoactivity of the available lone pair(s) on the sulfur donors, resulting in a dispersed, electropositive pocket from the N/N and N/S hydrocarbon linkers wherein the Cr-NO site is housed. Computational studies explored alternative isomers (transoid and inverted cisoid) that suggest a combination of electronic and steric effects govern the geometrical selectivity. Electrostatic potential maps readily display the dominant electronegative potential from the sulfurs which force the NO to the electropositive pocket. The available S lone pairs work in synergy with the π-withdrawing ability of NO to lift Cr out of the S4 plane toward the NO and stabilize the geometry. The metallodithiolate ligands bound to Cr(NO) thus find structural consistency across the three congeners. Although the dinitrosyl [(bme-dach)Co(NO)-Mo(NO)(MeCN)-(bme-dach)Co(MeCN)][PF6]2 (CoMoCo') analogue displays chemical noninnocence and a partial Mo-Co bond toward (N2S2)Co'(NCCH3) in an "asymmetric butterfly" topology [Guerrero-Almaraz P.Inorg. Chem.2021, 60(21 (21), ), 15975-15979], the stability of the {Cr(NO)}5 unit prohibits such bond rearrangement. Magnetism and EPR studies illustrate spin coupling across the sulfur thiolate sulfur bridges.
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Affiliation(s)
| | - Manuel Quiroz
- Department of Chemistry, Texas A&M University, College
Station, Texas 77843, United States
| | - David R. Rodriguez
- Department of Chemistry, Texas A&M University, College
Station, Texas 77843, United States
| | - Manish Jana
- Department of Chemistry, Texas A&M University, College
Station, Texas 77843, United States
| | - Michael B. Hall
- Department of Chemistry, Texas A&M University, College
Station, Texas 77843, United States
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18
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Trowbridge L, Averkiev B, Sues PE. Electrocatalytic Hydrogen Evolution using a Nickel-based Calixpyrrole Complex: Controlling the Secondary Coordination Sphere on an Electrode Surface. Chemistry 2023; 29:e202301920. [PMID: 37665793 PMCID: PMC10842979 DOI: 10.1002/chem.202301920] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2023] [Revised: 08/31/2023] [Accepted: 09/04/2023] [Indexed: 09/06/2023]
Abstract
Incorporating design elements from homogeneous catalysts to construct well defined active sites on electrode surfaces is a promising approach for developing next generation electrocatalysts for energy conversion reactions. Furthermore, if functionalities that control the electrode microenvironment could be integrated into these active sites it would be particularly appealing. In this context, a square planar nickel calixpyrrole complex, Ni(DPMDA) (DPMDA=2,2'-((diphenylmethylene)bis(1H-pyrrole-5,2-diyl))bis(methaneylylidene))bis(azaneylylidene))dianiline) with pendant amine groups is reported that forms a heterogeneous hydrogen evolution catalyst using anilinium tetrafluoroborate as the proton source. The supported Ni(DPMDA) catalyst was surprisingly stable and displayed fast reaction kinetics with turnover frequencies (TOF) up to 25,900 s-1 or 366,000 s-1 cm-2 . Kinetic isotope effect (KIE) studies revealed a KIE of 5.7, and this data, combined with Tafel slope analysis, suggested that a proton-coupled electron transfer (PCET) process involving the pendant amine groups was rate-limiting. While evidence of an outer-sphere reduction of the Ni(DPMDA) catalyst was observed, it is hypothesized that the control over the secondary coordination sphere provided by the pendant amines facilitated such high TOFs and enabled the PCET mechanism. The results reported herein provide insight into heterogeneous catalyst design and approaches for controlling the secondary coordination sphere on electrode surfaces.
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Affiliation(s)
- Logan Trowbridge
- Department of Chemistry, Kansas State University, 1212 Mid-Campus Drive North, Manhattan, Kansas, 66503, USA
| | - Boris Averkiev
- Department of Chemistry, Kansas State University, 1212 Mid-Campus Drive North, Manhattan, Kansas, 66503, USA
| | - Peter E Sues
- Department of Chemistry, Kansas State University, 1212 Mid-Campus Drive North, Manhattan, Kansas, 66503, USA
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19
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Greening C, Kropp A, Vincent K, Grinter R. Developing high-affinity, oxygen-insensitive [NiFe]-hydrogenases as biocatalysts for energy conversion. Biochem Soc Trans 2023; 51:1921-1933. [PMID: 37743798 PMCID: PMC10657181 DOI: 10.1042/bst20230120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2023] [Revised: 09/13/2023] [Accepted: 09/14/2023] [Indexed: 09/26/2023]
Abstract
The splitting of hydrogen (H2) is an energy-yielding process, which is important for both biological systems and as a means of providing green energy. In biology, this reaction is mediated by enzymes called hydrogenases, which utilise complex nickel and iron cofactors to split H2 and transfer the resulting electrons to an electron-acceptor. These [NiFe]-hydrogenases have received considerable attention as catalysts in fuel cells, which utilise H2 to produce electrical current. [NiFe]-hydrogenases are a promising alternative to the platinum-based catalysts that currently predominate in fuel cells due to the abundance of nickel and iron, and the resistance of some family members to inhibition by gases, including carbon monoxide, which rapidly poison platinum-based catalysts. However, the majority of characterised [NiFe]-hydrogenases are inhibited by oxygen (O2), limiting their activity and stability. We recently reported the isolation and characterisation of the [NiFe]-hydrogenase Huc from Mycobacterium smegmatis, which is insensitive to inhibition by O2 and has an extremely high affinity, making it capable of oxidising H2 in air to below atmospheric concentrations. These properties make Huc a promising candidate for the development of enzyme-based fuel cells (EBFCs), which utilise H2 at low concentrations and in impure gas mixtures. In this review, we aim to provide context for the use of Huc for this purpose by discussing the advantages of [NiFe]-hydrogenases as catalysts and their deployment in fuel cells. We also address the challenges associated with using [NiFe]-hydrogenases for this purpose, and how these might be overcome to develop EBFCs that can be deployed at scale.
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Affiliation(s)
- Chris Greening
- Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia
- Securing Antarctica's Environmental Future, Monash University, Clayton, VIC 3800, Australia
- Centre to Impact AMR, Monash University, Clayton, VIC 3800, Australia
- ARC Research Hub for Carbon Utilisation and Recycling, Monash University, Clayton, VIC 3800, Australia
| | - Ashleigh Kropp
- Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia
| | - Kylie Vincent
- Department of Chemistry, University of Oxford, Inorganic Chemistry Laboratory, Oxford OX1 3QR, U.K
| | - Rhys Grinter
- Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia
- Centre for Electron Microscopy of Membrane Proteins, Monash Institute of Pharmaceutical Sciences, Parkville, Victoria 3052, Australia
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20
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Zhang Y, Wang P, Xue S, Woods T, Guo Y, Zampella G, Rauchfuss TB, Arrigoni F. Synthesis, Spectroscopy, and Structure of [FeRu(μ-dithiolate)(CN) 2(CO) 4] 2. Inorg Chem 2023; 62:16842-16853. [PMID: 37788376 DOI: 10.1021/acs.inorgchem.3c02289] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/05/2023]
Abstract
The salt [K(18-crown-6)]2[Ru(CN)2(CO)3] ([K(18-crown-6)]2[1]) was generated by the reaction of Ru(C2H4)(CO)4 with [K(18-crown-6)]CN. An initial thermal reaction gives [Ru(CN)(CO)4]-, which, upon ultraviolet (UV) irradiation, reacts with a second equiv of CN-. Protonation of [1]2- gave [HRu(CN)2(CO)3]- ([H1]-), which was isolated as a single isomer with mutually trans cyanide ligands. The complex cis,cis,cis-[Ru(pdt)(CN)2(CO)2]2- ([2]2-) was prepared by the UV-induced reaction of [1]2- with propanedithiol (pdtH2). The corresponding iron complex cis,cis,cis-[Fe(pdt)(CN)2(CO)2]2- ([3]2-) was prepared similarly. The pdt complexes [2]2- and [3]2- were treated with Fe(benzylideneacetone)(CO)3 to give, respectively, [RuFe (μ-pdt)(CN)2(CO)4]2- ([5]2-) and [Fe2(μ-pdt)(CN)2(CO)4]2- ([4]2-). The pathway from [3]2- to Fe2 complex [4]2- implicates intermetallic migration of CN-. In contrast, the formation of [5]2- leaves the Ru(CN)2(CO) center intact, as confirmed by X-ray crystallography. The structure of [5]2- features a "rotated" square-pyramidal Fe(CO)2(μ-CO) site. NMR measurements indicate that the octahedral Ru site is stereochemically rigid, whereas the Fe site dynamically undergoes turnstile rotation. 57Fe Mössbauer spectral parameters are very similar for rotated [5]2- and unrotated Fe2 complex [4]2-, indicating the insensitivity of that technique to both the geometry and the oxidation state of the Fe site. According to cyclic voltammetry, [5]2- oxidizes at E1/2 ∼ -0.8 V vs Fc+/0. Electron paramagnetic resonance (EPR) measurements show that 1e- oxidation of [5]2- gives an S = 1/2 rhombic species, consistent with the formulation Ru(II)Fe(I), related to the Hox state of the [FeFe] hydrogenases. Density functional theory (DFT) studies reproduce the structure, 1H NMR shifts, and infrared (IR) spectra observed for [5]2-. Related homometallic complexes with both cyanides on a single metal are predicted to not adopt rotated structures. These data suggest that [5]2- is best described as Ru(II)Fe(0). This conclusion raises the possibility that for some reduced states of the [FeFe]-hydrogenases, the [2Fe]H site may be better described as Fe(II)Fe(0) than Fe(I)Fe(I).
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Affiliation(s)
- Yu Zhang
- School of Chemical Sciences, University of Illinois, Urbana, Illinois 61801, United States
| | - Ping Wang
- School of Chemical Sciences, University of Illinois, Urbana, Illinois 61801, United States
| | - Shan Xue
- Department of Chemistry, Carnegie-Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Toby Woods
- School of Chemical Sciences, University of Illinois, Urbana, Illinois 61801, United States
| | - Yisong Guo
- Department of Chemistry, Carnegie-Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Giuseppe Zampella
- Department of Biotechnology and Biosciences, University of Milano-Bicocca, Piazza della Scienza, 20126 Milan, Italy
| | - Thomas B Rauchfuss
- School of Chemical Sciences, University of Illinois, Urbana, Illinois 61801, United States
| | - Federica Arrigoni
- Department of Biotechnology and Biosciences, University of Milano-Bicocca, Piazza della Scienza, 20126 Milan, Italy
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21
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Rao G, Yu X, Zhang Y, Rauchfuss TB, Britt RD. Fully Refined Semisynthesis of the [FeFe] Hydrogenase H-Cluster. Biochemistry 2023; 62:2868-2877. [PMID: 37691492 DOI: 10.1021/acs.biochem.3c00393] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/12/2023]
Abstract
[FeFe] hydrogenases contain a 6-Fe cofactor that serves as the active site for efficient redox interconversion between H2 and protons. The biosynthesis of the so-called H-cluster involves unusual enzymatic reactions that synthesize organometallic Fe complexes containing azadithiolate, CO, and CN- ligands. We have previously demonstrated that specific synthetic [Fe(CO)x(CN)y] complexes can be used to functionally replace proposed Fe intermediates in the maturation reaction. Here, we report the results from performing such cluster semisynthesis in the context of a recent fully defined cluster maturation procedure, which eliminates unknown components previously employed from Escherichia coli cell lysate and demonstrate this provides a concise route to H-cluster synthesis. We show that formaldehyde can be used as a simple reagent as the carbon source of the bridging adt ligand of H-cluster in lieu of serine/serine hydroxymethyltransferase. In addition to the actual H-cluster, we observe the formation of several H-cluster-like species, the identities of which are probed by cryogenic photolysis combined with EPR/ENDOR spectroscopy.
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Affiliation(s)
- Guodong Rao
- Department of Chemistry, University of California, Davis, Davis, California 95616, United States
| | - Xin Yu
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois 61820, United States
| | - Yu Zhang
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois 61820, United States
| | - Thomas B Rauchfuss
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois 61820, United States
| | - R David Britt
- Department of Chemistry, University of California, Davis, Davis, California 95616, United States
- Miller Institute for Basic Research in Science, University of California, Berkeley, Berkeley, California 94720, United States
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22
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Zamader A, Reuillard B, Pérard J, Billon L, Berggren G, Artero V. Synthetic styrene-based bioinspired model of the [FeFe]-hydrogenase active site for electrocatalytic hydrogen evolution. SUSTAINABLE ENERGY & FUELS 2023; 7:4967-4976. [PMID: 38013894 PMCID: PMC10521030 DOI: 10.1039/d3se00409k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/27/2023] [Accepted: 07/30/2023] [Indexed: 11/29/2023]
Abstract
Integration of molecular catalysts inside polymeric scaffolds has gained substantial attention over the past decade, as it provides a path towards generating systems with enhanced stability as well as enzyme-like morphologies and properties. In the context of solar fuels research and chemical energy conversion, this approach has been found to improve both rates and energy efficiencies of a range of catalytic reactions. However, system performance still needs to be improved to reach technologically relevant currents and stability, parameters that are heavily influenced by the nature of the incorporated molecular catalyst. Here, we have focused on the integration of a biomimetic {Fe2(μ-adt)(CO)6} (-CH2NHCH2S-, azadithiolate or adt2-) based active site ("[2Fe2S]adt"), inspired by the catalytic cofactor of [FeFe] hydrogenases, within a synthetic polymeric scaffold using free radical polymerization. The resulting metallopolymers [2Fe2S]adtk[DMAEMA]l[PyBMA]m (DMAEMA = dimethylaminoethyl methacrylate as water soluble monomer; PyBMA = 4-(pyren-1-yl)-butyl methacrylate as hydrophobic anchor for heterogenization) were found to be active for electrochemical H2 production in neutral aqueous media. The pyrene content was varied to optimize durability and activity. Following immobilization on multiwalled carbon nanotubes (MWNT) the most active metallopolymer, containing ∼2.3 mol% of PyBMA, could reach a turnover number for hydrogen production (TONH2) of ∼0.4 ×105 over 20 hours of electrolysis at an overpotential of 0.49 V, two orders of magnitude higher than the isolated catalyst counterpart. The study provides a synthetic methodology for incorporating catalytic units featuring second coordination sphere functional groups, and highlights the benefit of the confinement within the polymer matrix for catalytic performance.
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Affiliation(s)
- Afridi Zamader
- Univ Grenoble Alpes, CNRS, CEA, IRIG, Laboratoire de Chimie et Biologie des Métaux 17 rue des Martyrs 38000 Grenoble France
- Department of Chemistry - Ångström Laboratory, Uppsala University Box 523 SE-75120 Uppsala Sweden
| | - Bertrand Reuillard
- Univ Grenoble Alpes, CNRS, CEA, IRIG, Laboratoire de Chimie et Biologie des Métaux 17 rue des Martyrs 38000 Grenoble France
| | - Julien Pérard
- Univ Grenoble Alpes, CNRS, CEA, IRIG, Laboratoire de Chimie et Biologie des Métaux 17 rue des Martyrs 38000 Grenoble France
| | - Laurent Billon
- Universite de Pau et Pays de l'Adour, E2S UPPA, IPREM, Bio-inspired Materials Group: Functionalities & Self-Assembly 2 avenue Angot 64053 Pau France
| | - Gustav Berggren
- Department of Chemistry - Ångström Laboratory, Uppsala University Box 523 SE-75120 Uppsala Sweden
| | - Vincent Artero
- Univ Grenoble Alpes, CNRS, CEA, IRIG, Laboratoire de Chimie et Biologie des Métaux 17 rue des Martyrs 38000 Grenoble France
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23
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Reuillard B, Costentin C, Artero V. Deciphering Reversible Homogeneous Catalysis of the Electrochemical H 2 Evolution and Oxidation: Role of Proton Relays and Local Concentration Effects. Angew Chem Int Ed Engl 2023; 62:e202302779. [PMID: 37073946 DOI: 10.1002/anie.202302779] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2023] [Revised: 04/19/2023] [Accepted: 04/19/2023] [Indexed: 04/20/2023]
Abstract
Nickel bisdiphosphine complexes bearing pendant amines form a unique series of catalysts (so-called DuBois' catalysts) capable of bidirectional/reversible electrocatalytic oxidation and production of dihydrogen. This unique behaviour is directly linked to the presence of proton relays installed close to the metal center. We report here for the arginine derivative [Ni(P2 Cy N2 Arg )2 ]6+ on a mechanistic model and its kinetic treatment that may apply to all DuBois' catalysts and show that it allows for a good fit of experimental data measured at different pH values, catalyst concentrations and partial hydrogen pressures. The bidirectionality of catalysis results from balanced equilibria related to hydrogen uptake/evolution on one side and (metal)-hydride installation/capture on the other side, both controlled by concentration effects resulting from the presence of proton relays and connected by two square schemes corresponding to proton-coupled electron transfer processes. We show that the catalytic bias is controlled by the kinetic of the H2 uptake/evolution step. Reversibility does not require that the energy landscape be flat, with redox transitions occurring at potentials up to 250 mV away for the equilibrium potential, although such large deviations from a flat energy landscape can negatively impacts the rate of catalysis when coupled with slow interfacial electron transfer kinetics.
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Affiliation(s)
| | | | - Vincent Artero
- Univ Grenoble Alpes, CNRS, CEA, IRIG, LCBM, 38000, Grenoble, France
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24
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Cabotaje P, Walter K, Zamader A, Huang P, Ho F, Land H, Senger M, Berggren G. Probing Substrate Transport Effects on Enzymatic Hydrogen Catalysis: An Alternative Proton Transfer Pathway in Putatively Sensory [FeFe] Hydrogenase. ACS Catal 2023; 13:10435-10446. [PMID: 37560193 PMCID: PMC10407848 DOI: 10.1021/acscatal.3c02314] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2023] [Revised: 07/04/2023] [Indexed: 08/11/2023]
Abstract
[FeFe] hydrogenases, metalloenzymes catalyzing proton/dihydrogen interconversion, have attracted intense attention due to their remarkable catalytic properties and (bio-)technological potential for a future hydrogen economy. In order to unravel the factors enabling their efficient catalysis, both their unique organometallic cofactors and protein structural features, i.e., "outer-coordination sphere" effects have been intensively studied. These structurally diverse enzymes are divided into distinct phylogenetic groups, denoted as Group A-D. Prototypical Group A hydrogenases display high turnover rates (104-105 s-1). Conversely, the sole characterized Group D representative, Thermoanaerobacter mathranii HydS (TamHydS), shows relatively low catalytic activity (specific activity 10-1 μmol H2 mg-1 min-1) and has been proposed to serve a H2-sensory function. The various groups of [FeFe] hydrogenase share the same catalytic cofactor, the H-cluster, and the structural factors causing the diverging reactivities of Group A and D remain to be elucidated. In the case of the highly active Group A enzymes, a well-defined proton transfer pathway (PTP) has been identified, which shuttles H+ between the enzyme surface and the active site. In Group D hydrogenases, this conserved pathway is absent. Here, we report on the identification of highly conserved amino acid residues in Group D hydrogenases that constitute a possible alternative PTP. We varied two proposed key amino acid residues of this pathway (E252 and E289, TamHydS numbering) via site-directed mutagenesis and analyzed the resulting variants via biochemical and spectroscopic methods. All variants displayed significantly decreased H2-evolution and -oxidation activities. Additionally, the variants showed two redox states that were not characterized previously. These findings provide initial evidence that these amino acid residues are central to the putative PTP of Group D [FeFe] hydrogenase. Since the identified residues are highly conserved in Group D exclusively, our results support the notion that the PTP is not universal for different phylogenetic groups in [FeFe] hydrogenases.
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Affiliation(s)
| | | | - Afridi Zamader
- Molecular Biomimetics, Department
of Chemistry, Ångström Laboratory, Uppsala University, Box 523, SE-75120 Uppsala, Sweden
| | - Ping Huang
- Molecular Biomimetics, Department
of Chemistry, Ångström Laboratory, Uppsala University, Box 523, SE-75120 Uppsala, Sweden
| | - Felix Ho
- Molecular Biomimetics, Department
of Chemistry, Ångström Laboratory, Uppsala University, Box 523, SE-75120 Uppsala, Sweden
| | - Henrik Land
- Molecular Biomimetics, Department
of Chemistry, Ångström Laboratory, Uppsala University, Box 523, SE-75120 Uppsala, Sweden
| | - Moritz Senger
- Molecular Biomimetics, Department
of Chemistry, Ångström Laboratory, Uppsala University, Box 523, SE-75120 Uppsala, Sweden
| | - Gustav Berggren
- Molecular Biomimetics, Department
of Chemistry, Ångström Laboratory, Uppsala University, Box 523, SE-75120 Uppsala, Sweden
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25
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Liu F, He L, Dong S, Xuan J, Cui Q, Feng Y. Artificial Small Molecules as Cofactors and Biomacromolecular Building Blocks in Synthetic Biology: Design, Synthesis, Applications, and Challenges. Molecules 2023; 28:5850. [PMID: 37570818 PMCID: PMC10421094 DOI: 10.3390/molecules28155850] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2023] [Revised: 07/25/2023] [Accepted: 07/28/2023] [Indexed: 08/13/2023] Open
Abstract
Enzymes are essential catalysts for various chemical reactions in biological systems and often rely on metal ions or cofactors to stabilize their structure or perform functions. Improving enzyme performance has always been an important direction of protein engineering. In recent years, various artificial small molecules have been successfully used in enzyme engineering. The types of enzymatic reactions and metabolic pathways in cells can be expanded by the incorporation of these artificial small molecules either as cofactors or as building blocks of proteins and nucleic acids, which greatly promotes the development and application of biotechnology. In this review, we summarized research on artificial small molecules including biological metal cluster mimics, coenzyme analogs (mNADs), designer cofactors, non-natural nucleotides (XNAs), and non-natural amino acids (nnAAs), focusing on their design, synthesis, and applications as well as the current challenges in synthetic biology.
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Affiliation(s)
- Fenghua Liu
- CAS Key Laboratory of Biofuels, Shandong Provincial Key Laboratory of Synthetic Biology, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, 189 Songling Road, Qingdao 266101, China
- Shandong Energy Institute, 189 Songling Road, Qingdao 266101, China
- Qingdao New Energy Shandong Laboratory, 189 Songling Road, Qingdao 266101, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Lingling He
- Department of Bioscience and Bioengineering, School of Chemistry and Biological Engineering, University of Science and Technology Beijing, 30 Xueyuan Road, Beijing 100083, China
| | - Sheng Dong
- CAS Key Laboratory of Biofuels, Shandong Provincial Key Laboratory of Synthetic Biology, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, 189 Songling Road, Qingdao 266101, China
- Shandong Energy Institute, 189 Songling Road, Qingdao 266101, China
- Qingdao New Energy Shandong Laboratory, 189 Songling Road, Qingdao 266101, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jinsong Xuan
- Department of Bioscience and Bioengineering, School of Chemistry and Biological Engineering, University of Science and Technology Beijing, 30 Xueyuan Road, Beijing 100083, China
| | - Qiu Cui
- CAS Key Laboratory of Biofuels, Shandong Provincial Key Laboratory of Synthetic Biology, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, 189 Songling Road, Qingdao 266101, China
- Shandong Energy Institute, 189 Songling Road, Qingdao 266101, China
- Qingdao New Energy Shandong Laboratory, 189 Songling Road, Qingdao 266101, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yingang Feng
- CAS Key Laboratory of Biofuels, Shandong Provincial Key Laboratory of Synthetic Biology, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, 189 Songling Road, Qingdao 266101, China
- Shandong Energy Institute, 189 Songling Road, Qingdao 266101, China
- Qingdao New Energy Shandong Laboratory, 189 Songling Road, Qingdao 266101, China
- University of Chinese Academy of Sciences, Beijing 100049, China
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26
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Zhang F, Woods TJ, Rauchfuss TB. Hybrids of [FeFe]- and [NiFe]-H 2ase Active Site Models. Organometallics 2023; 42:1607-1614. [PMID: 37928214 PMCID: PMC10624399 DOI: 10.1021/acs.organomet.3c00173] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2023]
Abstract
Complexes of the type (diphosphine)Ni(μ-SR)2Fe(CO)3 are investigated with azadithiolate (adt, HN(CH2S-)2) as the dithiolate. The resulting complexes are hybrid models for the active sites of the [NiFe]- and [FeFe]-hydrogenases. The key complex (dppv)Ni(μ-adt)Fe(CO)3 (3) was prepared from the complex Ni[(SCH2)2NCbz](dppv), which contains a Cbz-protected adt ligand (Cbz = C(O)OCH2Ph, dppv = cis-1,2-(Ph2P)2C2H2). This complex combines with Fe2(CO)9 to give (dppv)Ni[(μ-SCH2)2NCbz]Fe(CO)3, which is readily deprotected to give 3. Complex 3 undergoes protonation at both Fe and N to give successively [(dppv)Ni(μ-adt)FeH(CO)3]+ ([H3]+) and [(dppv)Ni(μ-adtH)FeH(CO)3]2+ ([H3H]2+). The redox properties and dynamics of these complexes resemble previously reported analogues with propanedithiolate. Solutions of [H3]+ readily degrade to [(dppv)Ni[(μ-SCH2)2NCH2]Fe(CO)3]+ ([4]+), which features a methylene group linking N and Fe. Complex [4]+ can be made in high yield by reaction of [H3]+ with CH2O, and this conversion was also demonstrated with 13CH2O. Complex [4]+ undergoes hydrogenolysis by photochemical reaction with H2 to give [(dppv)Ni[(μ-SCH2)2NMe]FeH(CO)3]+, the N-methylated analogue of [H3]+. Upon treatment ith Me3O+, [4]+ undergoes quaternization, giving [(dppv)Ni[(μ-SCH2)2N(Me)CH2]Fe(CO)3]2+. In contrast with the lability of [H3]+, the phosphine-substituted derivative [(dppv)Ni(μ-adt)FeH(CO)2(PPh3)]+ did not degrade. Most complexes were characterized by X-ray crystallography.
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Affiliation(s)
- Fanjun Zhang
- School of Chemical Sciences, University of Illinois, Urbana, Illinois 61801, United States; Present Address: School of Chemistry and Chemical Engineering, Qufu Normal University, Qufu, Shandong 273165, China (F.Z.)
| | - Toby J Woods
- School of Chemical Sciences, University of Illinois, Urbana, Illinois 61801, United States
| | - Thomas B Rauchfuss
- School of Chemical Sciences, University of Illinois, Urbana, Illinois 61801, United States
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27
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Clary KE, Gibson AC, Glass RS, Pyun J, Lichtenberger DL. Natural Assembly of Electroactive Metallopolymers on the Electrode Surface: Enhanced Electrocatalytic Production of Hydrogen by [2Fe-2S] Metallopolymers in Neutral Water. J Am Chem Soc 2023. [PMID: 37315082 DOI: 10.1021/jacs.3c03379] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
A molecular catalyst attached to an electrode surface can offer the advantages of both homogeneous and heterogeneous catalysis. Unfortunately, some molecular catalysts constrained to a surface lose much or all of their solution performance. In contrast, we found that when a small molecule [2Fe-2S] catalyst is incorporated into metallopolymers of the form PDMAEMA-g-[2Fe-2S] (PDMAEMA = poly(2-dimethylamino)ethyl methacrylate) and adsorbed to the surface, the observed rate of hydrogen production increases to kobs > 105 s-1 per active site with lower overpotential, increased lifetime, and tolerance to oxygen. Herein, the electrocatalytic performances of these metallopolymers with different length polymer chains are compared to reveal the factors that lead to this high performance. It was anticipated that smaller metallopolymers would have faster rates due to faster electron and proton transfers to more accessible active sites, but the experiments show that the rates of catalysis per active site are independent of the polymer size. Molecular dynamics modeling reveals that the high performance is a consequence of adsorption of these metallopolymers on the surface with natural assembly that brings the [2Fe-2S] catalytic sites into close contact with the electrode surface while maintaining exposure of the sites to protons in solution. The assembly is conducive to fast electron transfer, fast proton transfer, and a high rate of catalysis regardless of the polymer size. These results offer a guide to enhancing the performance of other electrocatalysts with incorporation into a polymer that provides an optimal interaction of the catalyst with the electrode and solution.
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Affiliation(s)
- Kayla E Clary
- Department of Chemistry and Biochemistry, The University of Arizona, 1306 East University Boulevard, Tucson, Arizona 85721, United States
| | - Arthur C Gibson
- Department of Chemistry and Biochemistry, The University of Arizona, 1306 East University Boulevard, Tucson, Arizona 85721, United States
| | - Richard S Glass
- Department of Chemistry and Biochemistry, The University of Arizona, 1306 East University Boulevard, Tucson, Arizona 85721, United States
| | - Jeffrey Pyun
- Department of Chemistry and Biochemistry, The University of Arizona, 1306 East University Boulevard, Tucson, Arizona 85721, United States
| | - Dennis L Lichtenberger
- Department of Chemistry and Biochemistry, The University of Arizona, 1306 East University Boulevard, Tucson, Arizona 85721, United States
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28
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Wang KY, Zhang J, Hsu YC, Lin H, Han Z, Pang J, Yang Z, Liang RR, Shi W, Zhou HC. Bioinspired Framework Catalysts: From Enzyme Immobilization to Biomimetic Catalysis. Chem Rev 2023; 123:5347-5420. [PMID: 37043332 PMCID: PMC10853941 DOI: 10.1021/acs.chemrev.2c00879] [Citation(s) in RCA: 56] [Impact Index Per Article: 56.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2022] [Indexed: 04/13/2023]
Abstract
Enzymatic catalysis has fueled considerable interest from chemists due to its high efficiency and selectivity. However, the structural complexity and vulnerability hamper the application potentials of enzymes. Driven by the practical demand for chemical conversion, there is a long-sought quest for bioinspired catalysts reproducing and even surpassing the functions of natural enzymes. As nanoporous materials with high surface areas and crystallinity, metal-organic frameworks (MOFs) represent an exquisite case of how natural enzymes and their active sites are integrated into porous solids, affording bioinspired heterogeneous catalysts with superior stability and customizable structures. In this review, we comprehensively summarize the advances of bioinspired MOFs for catalysis, discuss the design principle of various MOF-based catalysts, such as MOF-enzyme composites and MOFs embedded with active sites, and explore the utility of these catalysts in different reactions. The advantages of MOFs as enzyme mimetics are also highlighted, including confinement, templating effects, and functionality, in comparison with homogeneous supramolecular catalysts. A perspective is provided to discuss potential solutions addressing current challenges in MOF catalysis.
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Affiliation(s)
- Kun-Yu Wang
- Department
of Chemistry, Texas A&M University, College Station, Texas 77843, United States
- Department
of Chemistry, Key Laboratory of Advanced Energy Materials Chemistry
(MOE) and Renewable Energy Conversion and Storage Center (RECAST),
College of Chemistry, Nankai University, Tianjin 300071, China
| | - Jiaqi Zhang
- Department
of Chemistry, Texas A&M University, College Station, Texas 77843, United States
- Department
of Chemistry, Key Laboratory of Advanced Energy Materials Chemistry
(MOE) and Renewable Energy Conversion and Storage Center (RECAST),
College of Chemistry, Nankai University, Tianjin 300071, China
| | - Yu-Chuan Hsu
- Department
of Chemistry, Texas A&M University, College Station, Texas 77843, United States
| | - Hengyu Lin
- Department
of Chemistry, Texas A&M University, College Station, Texas 77843, United States
| | - Zongsu Han
- Department
of Chemistry, Texas A&M University, College Station, Texas 77843, United States
- Department
of Chemistry, Key Laboratory of Advanced Energy Materials Chemistry
(MOE) and Renewable Energy Conversion and Storage Center (RECAST),
College of Chemistry, Nankai University, Tianjin 300071, China
| | - Jiandong Pang
- Department
of Chemistry, Texas A&M University, College Station, Texas 77843, United States
- School
of Materials Science and Engineering, Tianjin Key Laboratory of Metal
and Molecule-Based Material Chemistry, Nankai
University, Tianjin 300350, China
| | - Zhentao Yang
- Department
of Chemistry, Texas A&M University, College Station, Texas 77843, United States
- Department
of Chemistry, Key Laboratory of Advanced Energy Materials Chemistry
(MOE) and Renewable Energy Conversion and Storage Center (RECAST),
College of Chemistry, Nankai University, Tianjin 300071, China
| | - Rong-Ran Liang
- Department
of Chemistry, Texas A&M University, College Station, Texas 77843, United States
| | - Wei Shi
- Department
of Chemistry, Key Laboratory of Advanced Energy Materials Chemistry
(MOE) and Renewable Energy Conversion and Storage Center (RECAST),
College of Chemistry, Nankai University, Tianjin 300071, China
| | - Hong-Cai Zhou
- Department
of Chemistry, Texas A&M University, College Station, Texas 77843, United States
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29
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Benndorf S, Schleusener A, Müller R, Micheel M, Baruah R, Dellith J, Undisz A, Neumann C, Turchanin A, Leopold K, Weigand W, Wächtler M. Covalent Functionalization of CdSe Quantum Dot Films with Molecular [FeFe] Hydrogenase Mimics for Light-Driven Hydrogen Evolution. ACS APPLIED MATERIALS & INTERFACES 2023; 15:18889-18897. [PMID: 37014708 PMCID: PMC10120591 DOI: 10.1021/acsami.3c00184] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2023] [Accepted: 02/28/2023] [Indexed: 05/27/2023]
Abstract
CdSe quantum dots (QDs) combined with [FeFe] hydrogenase mimics as molecular catalytic reaction centers based on earth-abundant elements have demonstrated promising activity for photocatalytic hydrogen generation. Direct linking of the [FeFe] hydrogenase mimics to the QD surface is expected to establish a close contact between the [FeFe] hydrogenase mimics and the light-harvesting QDs, supporting the transfer and accumulation of several electrons needed to drive hydrogen evolution. In this work, we report on the functionalization of QDs immobilized in a thin-film architecture on a substrate with [FeFe] hydrogenase mimics by covalent linking via carboxylate groups as the anchoring functionality. The functionalization was monitored via UV/vis, photoluminescence, IR, and X-ray photoelectron spectroscopy and quantified via micro-X-ray fluorescence spectrometry. The activity of the functionalized thin film was demonstrated, and turn-over numbers in the range of 360-580 (short linkers) and 130-160 (long linkers) were achieved. This work presents a proof-of-concept study, showing the potential of thin-film architectures of immobilized QDs as a platform for light-driven hydrogen evolution without the need for intricate surface modifications to ensure colloidal stability in aqueous environments.
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Affiliation(s)
- Stefan Benndorf
- Institute
of Inorganic and Analytical Chemistry, Friedrich
Schiller University Jena, Humboldtstr. 8, 07743 Jena, Germany
| | - Alexander Schleusener
- Institute
of Physical Chemistry, Friedrich Schiller
University Jena, Helmholtzweg
4, 07743 Jena, Germany
- Department:
Functional Interface, Leibniz Institute
of Photonic Technology, Albert-Einstein-Str. 9, 07745 Jena, Germany
| | - Riccarda Müller
- Institute
of Analytical and Bioanalytical Chemistry, Ulm University, Albert-Einstein-Allee
11, 89081 Ulm, Germany
| | - Mathias Micheel
- Department:
Functional Interface, Leibniz Institute
of Photonic Technology, Albert-Einstein-Str. 9, 07745 Jena, Germany
| | - Raktim Baruah
- Institute
of Physical Chemistry, Friedrich Schiller
University Jena, Helmholtzweg
4, 07743 Jena, Germany
- Department:
Functional Interface, Leibniz Institute
of Photonic Technology, Albert-Einstein-Str. 9, 07745 Jena, Germany
| | - Jan Dellith
- Department:
Functional Interface, Leibniz Institute
of Photonic Technology, Albert-Einstein-Str. 9, 07745 Jena, Germany
| | - Andreas Undisz
- Institute
of Materials Science and Engineering, Chemnitz
University of Technology, Erfenschlager Str. 73, 09125 Chemnitz, Germany
- Otto Schott
Institute of Materials Research, Friedrich
Schiller University Jena, 07743 Jena, Germany
| | - Christof Neumann
- Institute
of Physical Chemistry, Friedrich Schiller
University Jena, Helmholtzweg
4, 07743 Jena, Germany
| | - Andrey Turchanin
- Institute
of Physical Chemistry, Friedrich Schiller
University Jena, Helmholtzweg
4, 07743 Jena, Germany
- Abbe
Center of Photonics (ACP), Friedrich Schiller
University Jena, Albert-Einstein-Straße
6, 07745 Jena, Germany
| | - Kerstin Leopold
- Institute
of Analytical and Bioanalytical Chemistry, Ulm University, Albert-Einstein-Allee
11, 89081 Ulm, Germany
| | - Wolfgang Weigand
- Institute
of Inorganic and Analytical Chemistry, Friedrich
Schiller University Jena, Humboldtstr. 8, 07743 Jena, Germany
| | - Maria Wächtler
- Institute
of Physical Chemistry, Friedrich Schiller
University Jena, Helmholtzweg
4, 07743 Jena, Germany
- Department:
Functional Interface, Leibniz Institute
of Photonic Technology, Albert-Einstein-Str. 9, 07745 Jena, Germany
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30
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Chalopin Y, Cramer SP, Arragain S. Phonon-assisted electron-proton transfer in [FeFe] hydrogenases: Topological role of clusters. Biophys J 2023; 122:1557-1567. [PMID: 36960530 PMCID: PMC10147833 DOI: 10.1016/j.bpj.2023.03.027] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2022] [Revised: 02/27/2023] [Accepted: 03/16/2023] [Indexed: 03/25/2023] Open
Abstract
[FeFe] hydrogenases are enzymes that have acquired a unique capacity to synthesize or consume molecular hydrogen (H2). This function relies on a complex catalytic mechanism involving the active site and two distinct electron and proton transfer networks working in concert. By an analysis based on terahertz vibrations of [FeFe] hydrogenase structure, we are able to predict and identify the existence of rate-promoting vibrations at the catalytic site and the coupling with functional residues involved in reported electron and proton transfer networks. Our findings suggest that the positioning of the cluster is influenced by the response of the scaffold to thermal fluctuations, which in turn drives the formation of networks for electron transfer through phonon-assisted mechanisms. Thus, we address the problem of linking the molecular structure to the catalytic function through picosecond dynamics, while raising the functional gain brought by the cofactors or clusters, using the concept of fold-encoded localized vibrations.
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Affiliation(s)
- Yann Chalopin
- Laboratoire d'Energétique Macroscopique et Moléculaire, Combustion (EM2C), CNRS/CentraleSupélec, University of Paris-Saclay, Gif-sur-Yvette, France.
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31
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Zappelli C, Ciancaleoni G, Zacchini S, Marchetti F. Construction of Two-Faced (Hetero)hydrocarbyl Diiron Complexes Mediated by the Interplay of Ligands. Organometallics 2023. [DOI: 10.1021/acs.organomet.3c00088] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/31/2023]
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Iskandaryan M, Blbulyan S, Sahakyan M, Vassilian A, Trchounian K, Poladyan A. L-amino acids affect the hydrogenase activity and growth of Ralstonia eutropha H16. AMB Express 2023; 13:33. [PMID: 36932299 PMCID: PMC10023824 DOI: 10.1186/s13568-023-01535-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2023] [Accepted: 03/04/2023] [Indexed: 03/19/2023] Open
Abstract
Ralstonia eutropha H16 is a chemolithoautotrophic bacterium with O2-tolerant hydrogenase (Hyds) enzymes. Hyds are expressed in the presence of gas mixtures (H2, O2, CO2) or under energy limitation and stress conditions. O2-tolerant Hyds are promising candidates as anode biocatalysts in enzymatic fuel cells (EFCs). Supplementation of 0.5% (w/v) yeast extract to the fructose-nitrogen (FN) growth medium enhanced H2-oxidizing Hyd activity ~ sixfold. Our study aimed to identify key metabolites (L-amino acids (L-AAs) and vitamins) in yeast extract that are necessary for the increased synthesis and activity of Hyds. A decrease in pH and a reduction in ORP (from + 240 ± 5 mV to - 180 mV ± 10 mV values) after 24 h of growth in the presence of AAs were observed. Compared to the FN-medium control, supplementation of 7.0 μmol/ml of the L-AA mixture stimulated the growth of bacteria ~ 1.9 to 2.9 fold, after 72 h. The whole cells' H2-oxidizing Hyd activity was not observed in control samples, whereas the addition of L-AAs, mainly glycine resulted in a maximum of ~ 22 ± 0.5 and 15 ± 0.3 U, g CDW-1 activity after 24 h and 72 h, respectively. Our results suggest a correlation between ORP, pH, and function of Hyds in R. eutropha H16 in the presence of key L-AAs. L-AAs used in small amounts can be proposed as signaling molecules or key components of Hyd maturation. These results are important for the optimization of O2-tolerant Hyds production as anode biocatalysts.
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Affiliation(s)
- Meri Iskandaryan
- Department of Biochemistry, Microbiology, and Biotechnology, Biology Faculty, YSU, Yerevan, Armenia
| | - Syuzanna Blbulyan
- Department of Biochemistry, Microbiology, and Biotechnology, Biology Faculty, YSU, Yerevan, Armenia
| | - Mayramik Sahakyan
- Department of Biochemistry, Microbiology, and Biotechnology, Biology Faculty, YSU, Yerevan, Armenia
| | - Anait Vassilian
- Research Institute of Biology, Biology Faculty, YSU, Yerevan, Armenia
| | - Karen Trchounian
- Department of Biochemistry, Microbiology, and Biotechnology, Biology Faculty, YSU, Yerevan, Armenia.,Research Institute of Biology, Biology Faculty, YSU, Yerevan, Armenia
| | - Anna Poladyan
- Department of Biochemistry, Microbiology, and Biotechnology, Biology Faculty, YSU, Yerevan, Armenia. .,Research Institute of Biology, Biology Faculty, YSU, Yerevan, Armenia.
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Sidabras JW, Stripp ST. A personal account on 25 years of scientific literature on [FeFe]-hydrogenase. J Biol Inorg Chem 2023; 28:355-378. [PMID: 36856864 DOI: 10.1007/s00775-023-01992-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2022] [Accepted: 01/25/2023] [Indexed: 03/02/2023]
Abstract
[FeFe]-hydrogenases are gas-processing metalloenzymes that catalyze H2 oxidation and proton reduction (H2 release) in microorganisms. Their high turnover frequencies and lack of electrical overpotential in the hydrogen conversion reaction has inspired generations of biologists, chemists, and physicists to explore the inner workings of [FeFe]-hydrogenase. Here, we revisit 25 years of scientific literature on [FeFe]-hydrogenase and propose a personal account on 'must-read' research papers and review article that will allow interested scientists to follow the recent discussions on catalytic mechanism, O2 sensitivity, and the in vivo synthesis of the active site cofactor with its biologically uncommon ligands carbon monoxide and cyanide. Focused on-but not restricted to-structural biology and molecular biophysics, we highlight future directions that may inspire young investigators to pursue a career in the exciting and competitive field of [FeFe]-hydrogenase research.
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Affiliation(s)
- Jason W Sidabras
- Department of Biophysics, Medical College of Wisconsin, 8701 Watertown Plank Rd, Milwaukee, WI, USA, 53226.
| | - Sven T Stripp
- Department of Physics, Freie Universität Berlin, Arnimallee 14, 14195, Berlin, Germany.
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Torres A, Collado A, Gómez-Gallego M, de Arellano CR, Sierra MA. Heteropolymetallic [FeFe]-Hydrogenase Mimics: Synthesis and Electrochemical Properties. Inorg Chem 2023; 62:3409-3419. [PMID: 36780261 PMCID: PMC9976291 DOI: 10.1021/acs.inorgchem.2c03355] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2022] [Indexed: 02/14/2023]
Abstract
The synthesis and electrochemical properties of tetranuclear [Fe2S2]-hydrogenase mimic species containing Pt(II), Ni(II), and Ru(II) complexes have been studied. To this end, a new tetranuclear [Fe2S2] complex containing a 5,5'-diisocyanide-2,2'-bipyridine bridging ligand has been designed and coordinated to the metal complexes through the bipyridine moiety. Thus, the tetranuclear [Fe2S2] complex (6) coordinates to Pt(II), Ni(II) and Ru(II) yielding the corresponding metal complexes. The new metal center in the bipyridine linker modulates the electronic communication between the redox-active [Fe2S2] units. Thus, electrochemical studies and DFT calculations have shown that the presence of metal complexes in the structure strongly affect the electronic communication between the [Fe2S2] centers. In the case of diphosphine platinum compounds 10, the structure of the phosphine ligand plays a crucial role to facilitate or to hinder the electronic communication between [Fe2S2] moieties. Compound 10a, bearing a dppe ligand, shows weak electronic communication (ΔE = 170 mV), whereas the interaction is much weaker in the Pt-dppp derivative 10b (ΔE = 80 mV) and virtually negligible in the Pt-dppf complex 10c. The electronic communication is facilitated by incorporation of a Ru-bis(bipyridine) complex, as observed in the BF4 salt 12 (ΔE = 210 mV) although the reduction of the [FeFe] centers occurs at more negative potentials. Overall, the experimental-computational procedure used in this work allows us to study the electronic interaction between the redox-active centers, which, in turn, can be modulated by a transition metal.
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Affiliation(s)
- Alejandro Torres
- Departamento
de Química Orgánica I, Facultad de Química, Universidad Complutense, 28040 Madrid, Spain
- Center
for Innovation in Advanced Chemistry (ORFEO-CINQA), Facultad de Química, Universidad Complutense, 28040 Madrid, Spain
| | - Alba Collado
- Departamento
de Química Orgánica I, Facultad de Química, Universidad Complutense, 28040 Madrid, Spain
- Center
for Innovation in Advanced Chemistry (ORFEO-CINQA), Facultad de Química, Universidad Complutense, 28040 Madrid, Spain
| | - Mar Gómez-Gallego
- Departamento
de Química Orgánica I, Facultad de Química, Universidad Complutense, 28040 Madrid, Spain
- Center
for Innovation in Advanced Chemistry (ORFEO-CINQA), Facultad de Química, Universidad Complutense, 28040 Madrid, Spain
| | - Carmen Ramírez de Arellano
- Center
for Innovation in Advanced Chemistry (ORFEO-CINQA), Facultad de Química, Universidad Complutense, 28040 Madrid, Spain
- Departamento
de Química Orgánica, Universidad
de Valencia, 46100 Valencia, Spain
| | - Miguel A. Sierra
- Departamento
de Química Orgánica I, Facultad de Química, Universidad Complutense, 28040 Madrid, Spain
- Center
for Innovation in Advanced Chemistry (ORFEO-CINQA), Facultad de Química, Universidad Complutense, 28040 Madrid, Spain
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Taut J, Chambron J, Kersting B. Fifty Years of Inorganic Biomimetic Chemistry: From the Complexation of Single Metal Cations to Polynuclear Metal Complexes by Multidentate Thiolate Ligands. Eur J Inorg Chem 2023. [DOI: 10.1002/ejic.202200739] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/24/2023]
Affiliation(s)
- Josef Taut
- Institut für Anorganische Chemie Universität Leipzig Johannisallee 29 04103 Leipzig Germany
- Institut de Chimie de Strasbourg UMR 7177 CNRS-Université de Strasbourg 1, rue Blaise Pascal 67008 Strasbourg France
| | - Jean‐Claude Chambron
- Institut de Chimie de Strasbourg UMR 7177 CNRS-Université de Strasbourg 1, rue Blaise Pascal 67008 Strasbourg France
| | - Berthold Kersting
- Institut für Anorganische Chemie Universität Leipzig Johannisallee 29 04103 Leipzig Germany
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36
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Adding Diversity to Diiron Aminocarbyne Complexes with Amine Ligands. INORGANICS 2023. [DOI: 10.3390/inorganics11030091] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/24/2023] Open
Abstract
The reactions of the diiron aminocarbyne complexes [Fe2Cp2(NCMe)(CO)(μ-CO){μ-CN(Me)(R)}]CF3SO3 (R = Me, 1aNCMe; R = Cy, 1bNCMe), freshly prepared from the tricarbonyl precursors 1a–b, with primary amines containing an additional function (i.e., alcohol or ether) proceeded with the replacement of the labile acetonitrile ligand and formation of [Fe2Cp2(NH2CH2CH2OR’)(CO)(μ-CO){μ-CN(Me)(R)}]CF3SO3 (R = Me, R’ = H, 2a; R = Cy, R’ = H, 2b; R = Cy, R’ = Me, 2c) in 81–95% yields. The diiron-oxazolidinone conjugate [Fe2Cp2(NH2OX)(CO)(μ-CO){μ-CN(Me)2}]CF3SO3, 3, was prepared from 1a, 3-(2-aminoethyl)-5-phenyloxazolidin-2-one (NH2OX) and Me3NO, and finally isolated in 96% yield. In contrast, the one pot reactions of 1a-b with NHEt2 in the presence of Me3NO gave the unstable [Fe2Cp2(NHEt2)(CO)(μ-CO){μ-CN(Me)(R)}]CF3SO3 (R = Me, 4a; R = Cy, 4b) as unclean products. All diiron complexes were characterized by analytical and spectroscopic techniques; moreover, the behavior of 2a–c and 3 in aqueous media was ascertained.
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Iliescu A, Oppenheim JJ, Sun C, Dincǎ M. Conceptual and Practical Aspects of Metal-Organic Frameworks for Solid-Gas Reactions. Chem Rev 2023; 123:6197-6232. [PMID: 36802581 DOI: 10.1021/acs.chemrev.2c00537] [Citation(s) in RCA: 12] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/19/2023]
Abstract
The presence of site-isolated and well-defined metal sites has enabled the use of metal-organic frameworks (MOFs) as catalysts that can be rationally modulated. Because MOFs can be addressed and manipulated through molecular synthetic pathways, they are chemically similar to molecular catalysts. They are, nevertheless, solid-state materials and therefore can be thought of as privileged solid molecular catalysts that excel in applications involving gas-phase reactions. This contrasts with homogeneous catalysts, which are overwhelmingly used in the solution phase. Herein, we review theories dictating gas phase reactivity within porous solids and discuss key catalytic gas-solid reactions. We further treat theoretical aspects of diffusion within confined pores, the enrichment of adsorbates, the types of solvation spheres that a MOF might impart on adsorbates, definitions of acidity/basicity in the absence of solvent, the stabilization of reactive intermediates, and the generation and characterization of defect sites. The key catalytic reactions we discuss broadly include reductive reactions (olefin hydrogenation, semihydrogenation, and selective catalytic reduction), oxidative reactions (oxygenation of hydrocarbons, oxidative dehydrogenation, and carbon monoxide oxidation), and C-C bond forming reactions (olefin dimerization/polymerization, isomerization, and carbonylation reactions).
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Affiliation(s)
- Andrei Iliescu
- Department of Chemistry, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, United States
| | - Julius J Oppenheim
- Department of Chemistry, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, United States
| | - Chenyue Sun
- Department of Chemistry, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, United States
| | - Mircea Dincǎ
- Department of Chemistry, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, United States
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Torres A, Vicent DJ, Collado A, Gómez-Gallego M, de Arellano CR, Sierra MA. Phosphite Bearing [(μ-ADT) RFe 2(CO) 6] (ADT = Azadithiolate) Moieties: A Tool for the Building of Multimetallic [FeFe]-Hydrogenase Mimics. Organometallics 2023. [DOI: 10.1021/acs.organomet.2c00549] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/17/2023]
Affiliation(s)
- Alejandro Torres
- Departamento de Química Orgánica, Facultad de Química Universidad Complutense, 28040 Madrid, Spain
| | - Diego J. Vicent
- Departamento de Química Orgánica, Facultad de Química Universidad Complutense, 28040 Madrid, Spain
| | - Alba Collado
- Departamento de Química Inorgánica, Facultad de Ciencias, Universidad Autónoma de Madrid, 28049 Madrid, Spain
- Institute for Advanced Research in Chemical Sciences (IAdChem), Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | - Mar Gómez-Gallego
- Departamento de Química Orgánica, Facultad de Química Universidad Complutense, 28040 Madrid, Spain
| | | | - Miguel A. Sierra
- Departamento de Química Orgánica, Facultad de Química Universidad Complutense, 28040 Madrid, Spain
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Wang N, Zhang XP, Han J, Lei H, Zhang Q, Zhang H, Zhang W, Apfel UP, Cao R. Promoting hydrogen evolution reaction with a sulfonic proton relay. CHINESE JOURNAL OF CATALYSIS 2023. [DOI: 10.1016/s1872-2067(22)64183-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
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Xuan J, He L, Wen W, Feng Y. Hydrogenase and Nitrogenase: Key Catalysts in Biohydrogen Production. Molecules 2023; 28:molecules28031392. [PMID: 36771068 PMCID: PMC9919214 DOI: 10.3390/molecules28031392] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2022] [Revised: 01/28/2023] [Accepted: 01/29/2023] [Indexed: 02/05/2023] Open
Abstract
Hydrogen with high energy content is considered to be a promising alternative clean energy source. Biohydrogen production through microbes provides a renewable and immense hydrogen supply by utilizing raw materials such as inexhaustible natural sunlight, water, and even organic waste, which is supposed to solve the two problems of "energy supply and environment protection" at the same time. Hydrogenases and nitrogenases are two classes of key enzymes involved in biohydrogen production and can be applied under different biological conditions. Both the research on enzymatic catalytic mechanisms and the innovations of enzymatic techniques are important and necessary for the application of biohydrogen production. In this review, we introduce the enzymatic structures related to biohydrogen production, summarize recent enzymatic and genetic engineering works to enhance hydrogen production, and describe the chemical efforts of novel synthetic artificial enzymes inspired by the two biocatalysts. Continual studies on the two types of enzymes in the future will further improve the efficiency of biohydrogen production and contribute to the economic feasibility of biohydrogen as an energy source.
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Affiliation(s)
- Jinsong Xuan
- Department of Bioscience and Bioengineering, School of Chemistry and Biological Engineering, University of Science and Technology Beijing, 30 Xueyuan Road, Beijing 100083, China
- Correspondence: (J.X.); (Y.F.)
| | - Lingling He
- Department of Bioscience and Bioengineering, School of Chemistry and Biological Engineering, University of Science and Technology Beijing, 30 Xueyuan Road, Beijing 100083, China
| | - Wen Wen
- Department of Bioscience and Bioengineering, School of Chemistry and Biological Engineering, University of Science and Technology Beijing, 30 Xueyuan Road, Beijing 100083, China
| | - Yingang Feng
- CAS Key Laboratory of Biofuels, Shandong Provincial Key Laboratory of Synthetic Biology, Shandong Engineering Laboratory of Single Cell Oil, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, 189 Songling Road, Qingdao 266101, China
- Shandong Energy Institute, 189 Songling Road, Qingdao 266101, China
- Qingdao New Energy Shandong Laboratory, 189 Songling Road, Qingdao 266101, China
- University of Chinese Academy of Sciences, Beijing 100049, China
- Correspondence: (J.X.); (Y.F.)
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Zamader A, Reuillard B, Marcasuzaa P, Bousquet A, Billon L, Espí Gallart JJ, Berggren G, Artero V. Electrode Integration of Synthetic Hydrogenase as Bioinspired and Noble Metal-Free Cathodes for Hydrogen Evolution. ACS Catal 2023. [DOI: 10.1021/acscatal.2c05175] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Afridi Zamader
- Univ Grenoble Alpes, CNRS, CEA, IRIG, Laboratoire de Chimie et Biologie des Métaux, 17 Rue des Martyrs, Grenoble, Cedex F-38054, France
- Department of Chemistry─Ångström Laboratory, Uppsala University, Box 523, Uppsala SE-75120, Sweden
| | - Bertrand Reuillard
- Univ Grenoble Alpes, CNRS, CEA, IRIG, Laboratoire de Chimie et Biologie des Métaux, 17 Rue des Martyrs, Grenoble, Cedex F-38054, France
| | - Pierre Marcasuzaa
- Universite de Pau et des Pays de l’Adour, E2S UPPA, CNRS, IPREM, Pau 64053, France
- Bio-inspired Materials Group: Functionalities & Self-Assembly, Universite de Pau et des Pays de l’Adour, E2S UPPA, Pau 64053, France
| | - Antoine Bousquet
- Universite de Pau et des Pays de l’Adour, E2S UPPA, CNRS, IPREM, Pau 64053, France
| | - Laurent Billon
- Universite de Pau et des Pays de l’Adour, E2S UPPA, CNRS, IPREM, Pau 64053, France
- Bio-inspired Materials Group: Functionalities & Self-Assembly, Universite de Pau et des Pays de l’Adour, E2S UPPA, Pau 64053, France
| | - Jose Jorge Espí Gallart
- Eurecat, Centre Tecnologic de Catalunya, Waste, Energy and Environmental Impact Unit, Manresa 08243, Spain
| | - Gustav Berggren
- Department of Chemistry─Ångström Laboratory, Uppsala University, Box 523, Uppsala SE-75120, Sweden
| | - Vincent Artero
- Univ Grenoble Alpes, CNRS, CEA, IRIG, Laboratoire de Chimie et Biologie des Métaux, 17 Rue des Martyrs, Grenoble, Cedex F-38054, France
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Rutz A, Das CK, Fasano A, Jaenecke J, Yadav S, Apfel UP, Engelbrecht V, Fourmond V, Léger C, Schäfer LV, Happe T. Increasing the O 2 Resistance of the [FeFe]-Hydrogenase CbA5H through Enhanced Protein Flexibility. ACS Catal 2022; 13:856-865. [PMID: 36733639 PMCID: PMC9886219 DOI: 10.1021/acscatal.2c04031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2022] [Revised: 12/08/2022] [Indexed: 12/29/2022]
Abstract
The high turnover rates of [FeFe]-hydrogenases under mild conditions and at low overpotentials provide a natural blueprint for the design of hydrogen catalysts. However, the unique active site (H-cluster) degrades upon contact with oxygen. The [FeFe]-hydrogenase fromClostridium beijerinckii (CbA5H) is characterized by the flexibility of its protein structure, which allows a conserved cysteine to coordinate to the active site under oxidative conditions. Thereby, intrinsic cofactor degradation induced by dioxygen is minimized. However, the protection from O2 is only partial, and the activity of the enzyme decreases upon each exposure to O2. By using site-directed mutagenesis in combination with electrochemistry, ATR-FTIR spectroscopy, and molecular dynamics simulations, we show that the kinetics of the conversion between the oxygen-protected inactive state (cysteine-bound) and the oxygen-sensitive active state can be accelerated by replacing a surface residue that is very distant from the active site. This sole exchange of methionine for a glutamate residue leads to an increased resistance of the hydrogenase to dioxygen. With our study, we aim to understand how local modifications of the protein structure can have a crucial impact on protein dynamics and how they can control the reactivity of inorganic active sites through outer sphere effects.
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Affiliation(s)
- Andreas Rutz
- Photobiotechnology,
Department of Plant Biochemistry, Ruhr-Universität
Bochum, 44801 Bochum, Germany
| | - Chandan K. Das
- Theoretical
Chemistry, Ruhr-Universität Bochum, 44801 Bochum, Germany
| | - Andrea Fasano
- Laboratoire
de Bioénergétique et Ingénierie des Protéines, CNRS, Aix-Marseille Université, Institut de
Microbiologie de la Méditerranée, 13009 Marseille, France
| | - Jan Jaenecke
- Photobiotechnology,
Department of Plant Biochemistry, Ruhr-Universität
Bochum, 44801 Bochum, Germany
| | - Shanika Yadav
- Inorganic
Chemistry Ι, Department of Chemistry and Biochemistry, Ruhr-Universität Bochum, 44801 Bochum, Germany
| | - Ulf-Peter Apfel
- Inorganic
Chemistry Ι, Department of Chemistry and Biochemistry, Ruhr-Universität Bochum, 44801 Bochum, Germany,Fraunhofer
UMSICHT, 46047 Oberhausen, Germany
| | - Vera Engelbrecht
- Photobiotechnology,
Department of Plant Biochemistry, Ruhr-Universität
Bochum, 44801 Bochum, Germany
| | - Vincent Fourmond
- Laboratoire
de Bioénergétique et Ingénierie des Protéines, CNRS, Aix-Marseille Université, Institut de
Microbiologie de la Méditerranée, 13009 Marseille, France
| | - Christophe Léger
- Laboratoire
de Bioénergétique et Ingénierie des Protéines, CNRS, Aix-Marseille Université, Institut de
Microbiologie de la Méditerranée, 13009 Marseille, France
| | - Lars V. Schäfer
- Theoretical
Chemistry, Ruhr-Universität Bochum, 44801 Bochum, Germany
| | - Thomas Happe
- Photobiotechnology,
Department of Plant Biochemistry, Ruhr-Universität
Bochum, 44801 Bochum, Germany,
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Zamader A, Reuillard B, Pécaut J, Billon L, Bousquet A, Berggren G, Artero V. Non-Covalent Integration of a [FeFe]-Hydrogenase Mimic to Multiwalled Carbon Nanotubes for Electrocatalytic Hydrogen Evolution. Chemistry 2022; 28:e202202260. [PMID: 36069308 PMCID: PMC10092503 DOI: 10.1002/chem.202202260] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2022] [Indexed: 12/14/2022]
Abstract
Surface integration of molecular catalysts inspired from the active sites of hydrogenase enzymes represents a promising route towards developing noble metal-free and sustainable technologies for H2 production. Efficient and stable catalyst anchoring is a key aspect to enable this approach. Herein, we report the preparation and electrochemical characterization of an original diironhexacarbonyl complex including two pyrene groups per catalytic unit in order to allow for its smooth integration, through π-interactions, onto multiwalled carbon nanotube-based electrodes. In this configuration, the grafted catalyst could reach turnover numbers for H2 production (TONH2 ) of up to 4±2×103 within 20 h of bulk electrolysis, operating at neutral pH. Post operando analysis of catalyst functionalized electrodes revealed the degradation of the catalytic unit occurred via loss of the iron carbonyl units, while the anchoring groups and most part of the ligand remained attached onto multiwalled carbon nanotubes.
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Affiliation(s)
- Afridi Zamader
- Univ. Grenoble AlpesCNRSCEAIRIGLaboratoire de Chimie et Biologie des Métaux17 rue des MartyrsF-38054Grenoble, CedexFrance
- Molecular BiomimeticsDepartment of Chemistry – Ångström LaboratoryUppsala UniversityBox 523SE-75120UppsalaSweden
| | - Bertrand Reuillard
- Univ. Grenoble AlpesCNRSCEAIRIGLaboratoire de Chimie et Biologie des Métaux17 rue des MartyrsF-38054Grenoble, CedexFrance
| | - Jacques Pécaut
- Univ. Grenoble AlpesCEACNRSIRIG-SyMMESUMR 581938000GrenobleFrance
| | - Laurent Billon
- Universite Pau et des Pays de l'AdourE2S UPPACNRSIPREM64000PauFrance
- Bio-inspired Materials Group: Functionalities & Self-AssemblyUniversite de Pau et Pays de l'AdourE2S UPPA64053PauFrance
| | - Antoine Bousquet
- Bio-inspired Materials Group: Functionalities & Self-AssemblyUniversite de Pau et Pays de l'AdourE2S UPPA64053PauFrance
| | - Gustav Berggren
- Molecular BiomimeticsDepartment of Chemistry – Ångström LaboratoryUppsala UniversityBox 523SE-75120UppsalaSweden
| | - Vincent Artero
- Univ. Grenoble AlpesCNRSCEAIRIGLaboratoire de Chimie et Biologie des Métaux17 rue des MartyrsF-38054Grenoble, CedexFrance
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44
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Substituent effects in carbon-nanotube-supported diiron monophosphine complexes for hydrogen evolution reaction. Electrochim Acta 2022. [DOI: 10.1016/j.electacta.2022.141325] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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45
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Kumar N, Kaur‐Ghumaan S. Synthesis, Characterization and Electrochemical Studies of bis(Monothiolato) {FeFe} Complexes [Fe
2
(μ‐SC
6
H
4
‐OMe‐
m
)
2
(CO)
5
L] (L=CO, PCy
3
, PPh
3
). ChemistrySelect 2022. [DOI: 10.1002/slct.202203392] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
Affiliation(s)
- Naveen Kumar
- Department of Chemistry University of Delhi Delhi 110007 India
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46
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Orton GR, Ringenberg MR, Hogarth G. Biomimics of [FeFe]-hydrogenases incorporating redox-active ligands: Ferrocene-bridged dithiolate complexes [Fe2(CO)6(μ-EC5H4FeC5H4E)] (E = S, Se). J Organomet Chem 2022. [DOI: 10.1016/j.jorganchem.2022.122472] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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47
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Zhao PH, Gu XL, Tan X, Jin B, Guo Y. Bulky oxadithiolate-bridged [FeFe]‑hydrogenase mimics [Fe 2(μ-R 2odt)(CO) 4(κ 2-diphosphine)] (R = Ph and H) with chelating diphosphines. J Inorg Biochem 2022; 235:111933. [PMID: 35863295 DOI: 10.1016/j.jinorgbio.2022.111933] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2022] [Revised: 06/18/2022] [Accepted: 07/11/2022] [Indexed: 12/29/2022]
Abstract
In order to develop an attractive generation of bulky oxadithiolate-bridged [FeFe]‑hydrogenase mimics with chelating diphosphines, two new series of asymmetrically diphosphine-substituted diiron model complexes [Fe2(μ-R2odt)(CO)4(κ2-diphosphine)] (3-5) with bulky Ph2odt bridge and their reference counterparts (6-8) with common odt bridge were obtained from the Me3NO-assisted substitutions of diiron hexacarbonyl precursors [Fe2(μ-R2odt)(CO)6] (R2odt = (SCHR)2O, R = Ph (1) and H (2)) with different diphosphines such as (Ph2P)2NBn (labelled PNBnP, Bn = benzyl), (Ph2PCH2)2NBn (PCNBnCP), and (Ph2PCH2)2CH2 (DPPP)), respectively. All the as-prepared complexes have been characterized by elemental analysis, IR plus NMR spectroscopies, and particularly by X-ray crystallography for 3-8. It is interesting to note that complexes 3 and 6 chelating by small bite-angle PNBnP diphosphine have the favorable dibasal isomer whereas analogues 4, 5 and 7, 8 chelating by flexible backbone PCNBnCP or DPPP ligands possess the main apical-basal isomer in solution or in the solid state. Further, the electrochemical properties of two pairs of representative complexes 3, 6 and 5, 8 are explored and compared by cyclic voltammetry (CV) in the absence and presence of trifluoroacetic acid (CF3CO2H) as proton source, indicating that the complete protonations of 3, 6 and 5, 8 with higher concentration of CF3CO2H lead to two new catalytic waves for the electrocatalytic proton reduction to hydrogen (H2).
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Affiliation(s)
- Pei-Hua Zhao
- School of Materials Science and Engineering, North University of China, Taiyuan 030051, PR China.
| | - Xiao-Li Gu
- School of Materials Science and Engineering, North University of China, Taiyuan 030051, PR China
| | - Xiao Tan
- School of Materials Science and Engineering, North University of China, Taiyuan 030051, PR China
| | - Bo Jin
- School of Materials Science and Engineering, North University of China, Taiyuan 030051, PR China
| | - Yang Guo
- School of Materials Science and Engineering, North University of China, Taiyuan 030051, PR China
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48
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Lorenzi M, Gellett J, Zamader A, Senger M, Duan Z, Rodríguez-Maciá P, Berggren G. Investigating the role of the strong field ligands in [FeFe] hydrogenase: spectroscopic and functional characterization of a semi-synthetic mono-cyanide active site. Chem Sci 2022; 13:11058-11064. [PMID: 36320473 PMCID: PMC9516953 DOI: 10.1039/d2sc02271k] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2022] [Accepted: 08/05/2022] [Indexed: 08/11/2023] Open
Abstract
Artificial maturation of hydrogenases provides a path towards generating new semi-synthetic enzymes with novel catalytic properties. Here enzymes featuring a synthetic asymmetric mono-cyanide cofactor have been prepared using two different hydrogenase scaffolds. Their structure and reactivity was investigated in order to elucidate the design rationale behind the native di-cyanide cofactor, and by extension the second coordination sphere of the active-site pocket. Surprisingly, the choice of host enzyme was found to have a dramatic impact on reactivity. Moreover, the study shows that synthetic manipulations of the active-site can significantly increase inhibitor tolerance, as compared to native [FeFe] hydrogenase, while retaining the enzyme's native capacity for reversible catalysis.
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Affiliation(s)
- Marco Lorenzi
- Department of Chemistry - Ångström, Molecular Biomimetics, Uppsala University Lägerhyddsvägen 1 75120 Uppsala Sweden
| | - Joe Gellett
- Department of Chemistry, Inorganic Chemistry Laboratory, University of Oxford South Parks Road OX1 3QR UK
| | - Afridi Zamader
- Department of Chemistry - Ångström, Molecular Biomimetics, Uppsala University Lägerhyddsvägen 1 75120 Uppsala Sweden
- Laboratoire de Chimie et Biologie des Metaux, iRTSV-LCBM/Biocat, Commissariat à l'Energie Atomique (CEA) Grenoble 17, Rue des Martyrs, UMR 5249 38054 Grenoble Cedex 09 France
| | - Moritz Senger
- Department of Chemistry - Ångström, Physical Chemistry, Uppsala University Lägerhyddsvägen 1 75120 Uppsala Sweden
| | - Zehui Duan
- Department of Chemistry, Inorganic Chemistry Laboratory, University of Oxford South Parks Road OX1 3QR UK
| | - Patricia Rodríguez-Maciá
- Department of Chemistry, Inorganic Chemistry Laboratory, University of Oxford South Parks Road OX1 3QR UK
| | - Gustav Berggren
- Department of Chemistry - Ångström, Molecular Biomimetics, Uppsala University Lägerhyddsvägen 1 75120 Uppsala Sweden
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49
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Aguado S, Vicent DJ, Casarrubios L, Ramírez de Arellano C, Sierra MA. Two Complementary Approaches to Silicon-Supported Soluble [FeFe]-Hydrogenase Mimics. Organometallics 2022. [DOI: 10.1021/acs.organomet.2c00277] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Sergio Aguado
- Departamento de Química Orgánica, Facultad de Ciencias Químicas, Universidad Complutense, 28040 Madrid, Spain
- Centro de Innovación en Química Avanzada (ORFEO−CINQA), Departamento de Química Orgánica, Facultad de Ciencias Químicas, Universidad Complutense, 28040 Madrid, Spain
| | - Diego J. Vicent
- Departamento de Química Orgánica, Facultad de Ciencias Químicas, Universidad Complutense, 28040 Madrid, Spain
- Centro de Innovación en Química Avanzada (ORFEO−CINQA), Departamento de Química Orgánica, Facultad de Ciencias Químicas, Universidad Complutense, 28040 Madrid, Spain
| | - Luis Casarrubios
- Departamento de Química Orgánica, Facultad de Ciencias Químicas, Universidad Complutense, 28040 Madrid, Spain
- Centro de Innovación en Química Avanzada (ORFEO−CINQA), Departamento de Química Orgánica, Facultad de Ciencias Químicas, Universidad Complutense, 28040 Madrid, Spain
| | - Carmen Ramírez de Arellano
- Departamento de Química Orgánica, Universidad de Valencia, 46100 Valencia, Spain
- Centro de Innovación en Química Avanzada (ORFEO−CINQA), Departamento de Química Orgánica, Facultad de Ciencias Químicas, Universidad Complutense, 28040 Madrid, Spain
| | - Miguel A. Sierra
- Departamento de Química Orgánica, Facultad de Ciencias Químicas, Universidad Complutense, 28040 Madrid, Spain
- Centro de Innovación en Química Avanzada (ORFEO−CINQA), Departamento de Química Orgánica, Facultad de Ciencias Químicas, Universidad Complutense, 28040 Madrid, Spain
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50
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Guo K, Li X, Lei H, Guo H, Jin X, Zhang X, Zhang W, Apfel U, Cao R. Role‐Specialized Division of Labor in CO
2
Reduction with Doubly‐Functionalized Iron Porphyrin Atropisomers. Angew Chem Int Ed Engl 2022; 61:e202209602. [DOI: 10.1002/anie.202209602] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Indexed: 11/10/2022]
Affiliation(s)
- Kai Guo
- Key Laboratory of Applied Surface and Colloid Chemistry Ministry of Education School of Chemistry and Chemical Engineering Shaanxi Normal University Xi'an 710119 China
| | - Xialiang Li
- Key Laboratory of Applied Surface and Colloid Chemistry Ministry of Education School of Chemistry and Chemical Engineering Shaanxi Normal University Xi'an 710119 China
| | - Haitao Lei
- Key Laboratory of Applied Surface and Colloid Chemistry Ministry of Education School of Chemistry and Chemical Engineering Shaanxi Normal University Xi'an 710119 China
| | - Hongbo Guo
- Key Laboratory of Applied Surface and Colloid Chemistry Ministry of Education School of Chemistry and Chemical Engineering Shaanxi Normal University Xi'an 710119 China
| | - Xiaotong Jin
- Key Laboratory of Applied Surface and Colloid Chemistry Ministry of Education School of Chemistry and Chemical Engineering Shaanxi Normal University Xi'an 710119 China
| | - Xue‐Peng Zhang
- Key Laboratory of Applied Surface and Colloid Chemistry Ministry of Education School of Chemistry and Chemical Engineering Shaanxi Normal University Xi'an 710119 China
| | - Wei Zhang
- Key Laboratory of Applied Surface and Colloid Chemistry Ministry of Education School of Chemistry and Chemical Engineering Shaanxi Normal University Xi'an 710119 China
| | - Ulf‐Peter Apfel
- Ruhr-Universität Bochum, Fakultät für Chemie und Biochemie Anorganische Chemie I Universitätsstrasse 150 44801 Bochum Germany
- Fraunhofer UMSICHT Osterfelder Strasse 3 46047 Oberhausen Germany
| | - Rui Cao
- Key Laboratory of Applied Surface and Colloid Chemistry Ministry of Education School of Chemistry and Chemical Engineering Shaanxi Normal University Xi'an 710119 China
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