Vibrational Study of the Chain Conformation of the Liquid n‐Paraffins and Molten Polyethylene

Molecular symmetry change of perfluoro-n-alkanes in 'Phase I' monitored by infrared spectroscopy

Phase diagram of polytetrafluoroethylene (PTFE) comprises four regions. Phases II and IV are characterized by twisted perfluoroalkyl (Rf) chains having different twisting rate of 13/6 and 15/7, respectively, while Phase III is characterized by a planer trans-zigzag molecular skeleton like a normal alkyl chain. These are confirmed by X-ray and electron diffraction and have already been established. Unlike these, Phase I is left an unresolved matter. This phase is complicated indeed and is not symbolized by a single molecular structure. At an ambient pressure, Phase I is the temperature region above 30 ºC (303 K), and the helical molecular structure is supposed to be gradually untwisted with an elevating temperature. This untwisting image is roughly suggested by the diffraction, neutron scattering, and thermal expansion techniques, but the conventional approaches have all experimental limitations because the untwisting accompanies disorder (or defect) in the twist along the chain. To explore the transition between two different helical structures of the Rf chain having disordered structures, vibrational spectroscopic techniques are expected to be an alternative approach. For infrared spectroscopy, for example, the twisting rate of the molecule is simply recognized as a degree of molecular symmetry. Here, we show that the band progression peaks of the CF2 symmetric stretching vibration mode are quite sensitive and useful for pursuing the molecular symmetry change in Phase I for both peak intensity and position using perfluoro-n-alkanes having different chain length covering both even and odd number of the CF2 groups.

A compound eye-like morphology formed through hexagonal array of hemispherical microparticles where an alkyl-fullerene derivative self-assembled at atmosphere-sealed air/water interface

Self-assembly processes are widely used in nature to form hierarchically organized structures, prompting us to investigate such processes at the macroscopic scale. We report an unprecedented approach toward the self-assembly of alkyl-fullerene (C60) derivatives into a hexagonal array of hemispherical microparticles akin to the morphology of a compound eye. The method includes casting solvated alkyl-C60compound on an air/water interface followed by controlled evaporation of the solvent under atmosphere-sealed conditions. This leads to the formation of a thin film floating on water with a diameter of up to 1.3 centimeters and exhibiting a hexagonally-packed hemispherical structure with a diameter of approximately 38µm. Various measurements of the formed film reveal that amorphousness is necessary for suppressing uncontrollable crystallization, which affects the microparticle size and film formation mechanism. We tested the feasibility of this approach for the self-assembly of a relatively common C60derivative, [6,6]-phenyl-C61-butyric acid methyl ester (PC61BM), resulting in the formation of a film with a similar pattern of hexagonally-packed larger microparticles approximately 152µm in size of diameter.

The Value of Different Experimental Observables: A Transient Absorption Study of the Ultraviolet Excitation Dynamics Operating in Nitrobenzene

Excess energy redistribution dynamics operating in nitrobenzene under hexane and isopropanol solvation were investigated using ultrafast transient absorption spectroscopy (TAS) with a 267 nm pump and a 340-750 nm white light continuum probe. The use of a nonpolar hexane solvent provides a proxy to the gas-phase environment, and the findings are directly compared with a recent time-resolved photoelectron imaging (TRPEI) study on nitrobenzene using the same excitation wavelength [L. Saalbach et al., J. Phys. Chem. A 2021, 125, 7174-7184]. Of note is the observation of a 1/e lifetime of 3.5-6.7 ps in the TAS data that was absent in the TRPEI measurements. This is interpreted as a dynamical signature of the T2 state in nitrobenzene─analogous to observations in the related nitronaphthalene system, and additionally supported by previous quantum chemistry calculations. The discrepancy between the TAS and TRPEI measurements is discussed, with the overall findings providing an example of how different spectroscopic techniques can exhibit varying sensitivity to specific steps along the overall reaction coordinate connecting reactants to photoproducts.

Molecular dynamics simulations of phase change materials for thermal energy storage: a review

Phase change materials (PCM) have had a significant role as thermal energy transfer fluids and nanofluids and as media for thermal energy storage. Molecular dynamics (MD) simulations, can play a significant role in addressing several thermo-physical problems of PCMs at the atomic scale by providing profound insights and new information. In this paper, the reviewed research is classified into five groups: pure PCM, mixed PCM, PCM containing nanofillers, nano encapsulated PCM, and PCM in nanoporous media. A summary of the equilibrium and non-equilibrium MD simulations of PCMs and their results is presented as well. The primary results of the simulated systems are demonstrated to be efficient in manufacturing phase change materials with better thermal energy storage features. The goals of these studies are to achieve higher thermal conductivity, higher thermal capacity, and lower density change, determine the melting point, and understand the molecular behaviors of PCM composites. A molecular dynamics-based grouping (PCM simulation table) was presented that is very useful for the future roadmap of PCM simulation. In the end, the PCFF force field is presented in detail and a case problem is studied for more clarity. The results show that simulating the PCMs with a similar strategy could be performed systematically. Results of investigations of thermal conductivity enhancement showed that this characteristic can be increased at the nano-scale by the orientation of PCM molecules.

Simultaneous parametrization of torsional and third-neighbor interaction terms in force-field development: The LLS-SC algorithm

The calibration of torsional interaction terms by fitting relative gas-phase conformational energies against their quantum-mechanical values is a common procedure in force-field development. However, much less attention has been paid to the optimization of third-neighbor nonbonded interaction parameters, despite their strong coupling with the torsions. This article introduces an algorithm termed LLS-SC, aimed at simultaneously parametrizing torsional and third-neighbor interaction terms based on relative conformational energies. It relies on a self-consistent (SC) procedure where each iteration involves a linear least-squares (LLS) regression followed by a geometry optimization of the reference structures. As a proof-of-principle, this method is applied to obtain torsional and third-neighbor interaction parameters for aliphatic chains in the context of the GROMOS 53A6 united-atom force field. The optimized parameter set is compared to the original one, which has been fitted manually against thermodynamic properties for small linear alkanes. The LLS-SC implementation is freely available under http://github.com/mssm-labmmol/profiler.

Colossal and reversible barocaloric effect in liquid-solid-transition materials n-alkanes

Emerging caloric cooling technology provides a green alternative to conventional vapor-compression technology which brings about serious environmental problems. However, the reported caloric materials are much inferior to their traditional counterparts in cooling capability. Here we report the barocaloric (BC) effect associated with the liquid-solid-transition (L-S-T) in n-alkanes. A low-pressure of ~50 MPa reversibly triggers an entropy change of ~700 J kg⁻¹ K⁻¹, comparable to those of the commercial refrigerants in vapor-based compression systems. The Raman study and theoretical calculations reveal that applying pressure to the liquid state suppresses the twisting and random thermal motions of molecular chains, resulting in a lower configurational entropy. When the pressure is strong enough to drive the L-S-T, the configurational entropy will be fully suppressed and induce the colossal BC effect. This work could open a new avenue for exploring the colossal BC effect by evoking L-S-T materials.

Barocaloric effect, previously reported in solid-solid phase transition materials, offers a green alternative to current cooling technology. Here the authors report colossal BCE in n-alkanes associated with liquid–solid transition.

In situ quantitative study of the phase transition in surfactant adsorption layers at the silica-water interface using total internal reflection Raman spectroscopy

Dimethyldodecylamine N-oxide (DDAO), a unique type of surfactant, shows high surface activity with two distinct energy states at the buried hydrophilic silica/aqueous solution interface studied by total internal reflection (TIR) Raman spectroscopy combined with ratiometric and kinetic analysis. Different from other types of surfactant, i.e., ionic and nonionic, the adsorption of DDAO demonstrates a specific critical surface aggregation concentration (csac) at 0.15 mM gives a complete surface coverage of 6.6 ± 0.3 μmol m^-2, much lower than the bulk critical micellization concentration (cmc) at the same conditions (csac ≈ 0.072 cmc). A phase transition of adsorbed layers from liquid crystalline as the intermediate state to the disordered liquid phase is spectroscopically and energetically analyzed. The adsorption of DDAO on silica surfaces is described quantitatively in a potential energy curve.

Hydrogen and C2-C6 Alkane Sensing in Complex Fuel Gas Mixtures with Fiber-Enhanced Raman Spectroscopy

Power-to-gas is a heavily discussed option to store surplus electricity from renewable sources. Part of the generated hydrogen could be fed into the gas grid and lead to fluctuations in the composition of the fuel gas. Consequently, both operators of transmission networks and end users would need to frequently monitor the gas to ensure safety as well as optimal and stable operation. Currently, gas chromatography-based analysis methods are the state of the art. However, these methods have several downsides for time-resolved and distributed application and Raman gas spectroscopy is favorable for future point-of-use monitoring. Here, we demonstrate that fiber-enhanced Raman gas spectroscopy (FERS) enables the simultaneous detection of all relevant gases, from major (methane, CH₄; hydrogen, H₂) to minor (C2-C6 alkanes) fuel gas components. The characteristic peaks of H₂ (585 cm^-1), CH₄ (2917 cm^-1), isopentane (765 cm^-1), i-butane (798 cm^-1), n-butane (830 cm^-1), n-pentane (840 cm^-1), propane (869 cm^-1), ethane (993 cm^-1), and n-hexane (1038 cm^-1) are well resolved in the broadband spectra acquired with a compact spectrometer. The fiber enhancement achieved in a hollow-core antiresonant fiber enables highly sensitive measurements with limits of detection between 90 and 180 ppm for different hydrocarbons. Both methane and hydrogen were quantified with high accuracy with average relative errors of 1.1% for CH₄ and 1.5% for H₂ over a wide concentration range. These results show that FERS is ideally suited for comprehensive fuel gas analysis in a future, where regenerative sources lead to fluctuations in the composition of gas.

Hybrid Oleate-Iodide Ligand Shell for Air-Stable PbSe Nanocrystals and Superstructures

A postsynthetic treatment is presented to improve the air stability of PbSe nanocrystals (NCs) and PbSe square superstructures. The addition of z-type Pb(oleate)₂ ligands together with x-type iodide ligands creates a hybrid ligand shell containing both ligands. The air stability of the PbSe NCs is checked by enduring absorption spectroscopy under ambient conditions. With a combined NaI + Pb(oleate)₂ treatment, the absorption spectrum remains unchanged for several days under ambient conditions. Fourier transform infrared spectroscopy shows that the surface coordination of the oleate ligands changes by the chemical treatment: from mixed chelating bidentate + bridging to Pb for the pristine nanocrystals to almost exclusive chelating bidentate coordination after chemical passivation. The shift of the C-H stretching vibration shows that the oleate hydrocarbon layer is in a more liquidlike state after the chemical treatment, suggesting that oleate and iodide ligands are often present on adjacent surface positions.

Sizing Curve, Absorption Coefficient, Surface Chemistry, and Aliphatic Chain Structure of PbTe Nanocrystals

For colloidal semiconductor nanocrystals (NCs), the knowledge of the chemical structure and the size-dependent optical properties is of crucial importance, both from a practical and fundamental perspective. Here, we report the basic properties of PbTe NCs in order to complement the already existing knowledge on PbS and PbSe NCs. The band gap versus NC diameter (sizing) curve was determined by combining transmission electron microscopy with absorption spectroscopy; the energy of the primary optical absorption follows 1/d dependence with the diameter. The lead content of the NCs was determined with inductive coupled plasma optical emission spectrometry and the relative tellurium content with energy-dispersive X-ray spectroscopy. Combining these results yields a relation for the intrinsic absorption coefficient, which is independent of the NC size at 3.1 eV. The PbTe NCs are stabilized by Pb(oleate)₂, but different from PbS NCs, oleate is predominantly bound in a chelating bidentate coordination. Besides that, we analyzed the structure of the aliphatic chains on all lead chalcogenide NCs and showed that the aliphatic chains are partly crystalline near the core and more liquid-like at the solvent side.

Molecular Adsorption Mechanism of Elemental Carbon Particles on Leaf Surface

Plant leaves can effectively capture and retain particulate matter (PM), improving air quality and human health. However, little is known about the adsorption mechanism of PM on leaf surface. Black carbon (BC) has great adverse impact on climate and environment. Four types of elemental carbon (EC) particles, carbon black as a simple model for BC, graphite, reduced graphene oxide, and graphene oxide, and C₃₆H₇₄/C₄₄H₈₈O₂ as model compounds for epicuticular wax were chosen to study their interaction and its impact at the molecular level using powder X-ray diffraction and vibrational spectroscopy (infrared and Raman). The results indicate that EC particles and wax can form C-H···π type hydrogen bonding with charge transfer from carbon to wax; therefore, strong attraction is expected between them due to the cooperativity of hydrogen bonding and London dispersion from instantaneous dipoles. In reality, once settled on the leaf surface, especially without wax ultrastructures, BC with extremely large surface-to-volume ratio will likely stick and stay. On the other hand, BC particles can lead to phase transition of epicuticular wax from crystalline to amorphous structures by creating packing disorder and end- gauche defects of wax molecular chain, potentially causing water loss and thereby damage of plants.

Alkane Coiling in Perfluoroalkane Solutions: A New Primitive Solvophobic Effect

In this work, we demonstrate that n-alkanes coil when mixed with perfluoroalkanes, changing their conformational equilibria to more globular states, with a higher number of gauche conformations. The new coiling effect is here observed in fluids governed exclusively by dispersion interactions, contrary to other examples in which hydrogen bonding and polarity play important roles. FTIR spectra of liquid mixtures of n-hexane and perfluorohexane unambiguously reveal that the population of n-hexane molecules in all-trans conformation reduces from 32% in the pure n-alkane to practically zero. The spectra of perfluorohexane remain unchanged, suggesting nanosegregation of the hydrogenated and fluorinated chains. Molecular dynamics simulations support this analysis. The new solvophobic effect is prone to have a major impact on the structure, organization, and therefore thermodynamic properties and phase equilibria of fluids involving mixed hydrogenated and fluorinated chains.

Raman spectroscopy of biomedical polyethylenes

With the development of three-dimensional Raman algorithms for local mapping of oxidation and plastic strain, and the ability to resolve molecular orientation patterns with microscopic spatial resolution, there is an opportunity to re-examine many of the foundations on which our understanding of biomedical grade ultra-high molecular weight polyethylenes (UHMWPEs) are based. By implementing polarized Raman spectroscopy into an automatized tool with an improved precision in non-destructively resolving Euler angles, oxidation levels, and microscopic strain, we become capable to make accurate and traceable measurements of the in vitro and in vivo tribological responses of a variety of commercially available UHMWPE bearings for artificial hip and knee joints. In this paper, we first review the foundations and the main algorithms for Raman analyses of oxidation and strain of biomedical polyethylene. Then, we critically re-examine a large body of Raman data previously collected on different polyethylene joint components after in vitro testing or in vivo service, in order to shed new light on an area of particular importance to joint orthopedics: the microscopic nature of UHMWPE surface degradation in the human body. A complex scenario of physical chemistry appears from the Raman analyses, which highlights the importance of molecular-scale phenomena besides mere microstructural changes. The availability of the Raman microscopic probe for visualizing oxidation patterns unveiled striking findings related to the chemical contribution to wear degradation: chain-breaking and subsequent formation of carboxylic acid sites preferentially occur in correspondence of third-phase regions, and they are triggered by emission of dehydroxylated oxygen from ceramic oxide counterparts. These findings profoundly differ from more popular (and simplistic) notions of mechanistic tribology adopted in analyzing joint simulator data. Statement of Significance This review was dedicated to the theoretical and experimental evaluation of the commercially available biomedical polyethylene samples by Raman spectroscopy with regard to their molecular textures, oxidative patterns, and plastic strain at the microscopic level in the three dimensions of the Euclidean space. The main achievements could be listed, as follow: (i) visualization of molecular patterns at the surface of UHMWPE bearings operating against metallic components; (ii) differentiation between wear and creep deformation in retrievals; (iii) non-destructive mapping of oxidative patterns; and, (iv) the clarification of chemical interactions between oxide/non-oxide ceramic heads and advanced UHMWPE liners.

Compression-Induced Conformation and Orientation Changes in an n-Alkane Monolayer on a Au(111) Surface

The influence of the preparation method and adsorbed amount of n-tetratetracontane (n-C₄₄H₉₀) on its orientation in a monolayer on the Au(111) surface is studied by near carbon K-edge X-ray absorption fine structure spectroscopy (C K-NEXAFS), scanning tunneling microscopy (STM) under ultrahigh vacuum, and infrared reflection-absorption spectroscopy (IRAS) at the electrochemical interface in sulfuric acid solution. The n-C₄₄H₉₀ molecules form self-assembled lamellar structures with the chain axis parallel to the surface, as observed by STM. For small amounts adsorbed, the carbon plane is parallel to the surface (flat-on orientation). An increase in the adsorbed amount by ∼10-20% induces compression of the lamellar structure either along the lamellar axis or alkyl chain axis. The compressed molecular arrangement is observed by STM, and induced conformation and orientation changes are confirmed by in situ IRAS and C K-NEXAFS.

Alpha-helix to beta-sheet transition in long-chain poly-l-lysine: Formation of alpha-helical fibrils by poly-l-lysine

The temperature-induced α-helix to β-sheet transition in long-chain poly-l-lysine (PLL), accompanied by the gauche-to-trans isomerization of CH₂ groups in the hydrocarbon side chains of Lys amino acid residues, and formation of β-sheet as well as α-helix fibrillar aggregates of PLL have been studied using Fourier-transform infrared (FT-IR) and vibrational circular dichroism (VCD) spectroscopy, and transmission electron microscopy (TEM). In a low-temperature alkaline water solution or in a methanol-rich water mixture, the secondary structure of PLL is represented by α-helical conformations with unordered and gauche-rich hydrocarbon side chains. Under these conditions, PLL molecules aggregate into α-helical fibrils. PLLs dominated by extended antiparallel β-sheet structures with highly ordered trans-rich hydrocarbon side chains are formed in a high-temperature range at alkaline pD and aggregate into fibrillar, protofibrillar, and spherical forms. Presented data support the idea that fibrillar aggregation is a varied phenomenon possible in repetitive structural elements with not only a β-sheet-rich conformation, but also an α-helical-rich conformation.

Confined condensation synthesis and magnetic properties of layered copper hydroxide frameworks

We present a confined condensation technique for the fabrication of layered copper hydroxide frameworks from lamellar copper-organic assemblies with long alkyl chains through the selective introduction of hydroxo bridging ligands. The complete transformations of two different lamellar copper-organic assemblies, Cu(C₁₂H₂₅SO₄)₂·4H₂O (Cu-DS) and Cu₂(C₁₁H₂₃CO₂)₄·2H₂O (Cu-lau), into the corresponding layered copper hydroxide frameworks, Cu₂(OH)₃(C₁₂H₂₅SO₄) (Cu-OH-DS) and Cu₂(OH)_1.8(C₁₁H₂₃CO₂)_2.2 (Cu-OH-lau), were achieved via confined condensation. The magnetic properties of both lamellar copper-organic assemblies, Cu-DS and Cu-lau, and both layered copper hydroxide frameworks, Cu-OH-DS and Cu-OH-lau, were investigated. It was found that drastic changes in the magnetic properties arise as a result of the confined condensation process.

Individual and combined toxic effect of nickel and chromium on biochemical constituents in E. coli using FTIR spectroscopy and Principle component analysis

Ni and Cr are ubiquitous pollutants in the aquatic environments. These heavy metals elicit toxicities to aquatic organisms including microbes. In this study, interaction of the two heavy metals on the toxicity in Escherichia coli (E. coli) was studied using FTIR spectroscopy. The binding of Ni(II) to E. coli was stronger than that for Cr(VI). Cr exhibited antagonistic effects in the presence of Ni in E. coli. FTIR analysis showed a decrease in lipid content in the presence of Ni and not for Cr. Further, a decrease in band area was observed in the region of 3000-2800cm(-1) and at ~1455cm(-1) due to a decrease in fatty acids and lipid molecules. The band area ratio of lipid was used to monitor the changes in fatty acids due to metal toxicity. Principle component method helps to discriminates the results between control and metal toxicities in E. coli from the FTIR data. The study shows the importance of metal interaction and its toxicity on E. coli.

Raman analysis of bond conformations in the rotator state and premelting of normal alkanes

We perform Raman spectroscopic measurements on normal alkanes (CnH2n+2) to quantify the n dependence of the conformational disorder that occurs below the melt temperature. We employ a three-state spectral analysis method originally developed for semi-crystalline polyethylene that posits crystalline, amorphous, and non-crystalline consecutive trans (NCCT) conformations to extract their respective mass fractions. For the alkanes studied that melt via a rotator phase (21 ≤n≤ 37), we find that conformational disorder can be quantified by the loss of NCCT mass fraction, which systematically decreases with increasing chain length. For those that melt directly via the crystal phase (n≥ 40), we observe NCCT conformational mass fractions that are independent of chain length but whose disordered mass fraction increases with length. These complement prior IR measurements which measure disorder via gauche conformations, but have not been able to measure the mass fraction of this disorder as a function of n. An interesting feature of the three-state analysis when applied to alkanes is that the measured fraction of disordered chain conformations in the rotator phase of (10 to 30)% greatly exceeds the mass fraction of gauche bonds (1 to 7)% as measured from IR; we reconcile this difference through DFT calculations.

Simultaneous imaging of fat crystallinity and crystal polymorphic types by Raman microspectroscopy

The crystalline states of fats, i.e., the crystallinity and crystal polymorphic types, strongly influence their physical properties in fat-based foods. Imaging of fat crystalline states has thus been a subject of abiding interest, but conventional techniques cannot image crystallinity and polymorphic types all at once. This article demonstrates a new technique using Raman microspectroscopy for simultaneously imaging the crystallinity and polymorphic types of fats. The crystallinity and β' crystal polymorph, which contribute to the hardness of fat-based food products, were quantitatively visualized in a model fat (porcine adipose tissue) by analyzing several key Raman bands. The emergence of the β crystal polymorph, which generally results in food product deterioration, was successfully imaged by analyzing the whole fingerprint regions of Raman spectra using multivariate curve resolution alternating least squares analysis. The results demonstrate that the crystalline states of fats can be nondestructively visualized and analyzed at the molecular level, in situ, without laborious sample pretreatments.

Optimization of the surface properties of nanostructured Ni–W alloys on steel by a mixed silane layer

Optimization of the surface properties of nanostructured Ni–W coatings on steel by a mixed silane layer.

Infrared and Raman spectroscopic studies of tris-[3-(trimethoxysilyl)propyl] isocyanurate, its sol-gel process, and coating on aluminum and copper

Tris-[3-(trimethoxysilyl)propyl] isocyanurate (TTPI) has been used as a precursor to prepare a sol using ethanol as the solvent under acidic conditions. The sol-gel was applied for the surface treatment of aluminum and copper. Infrared and Raman spectra have been recorded for pure TTPI and the TTPI sol, xerogel and TTPI sol-gel coated metals. From the vibrational spectra, TTPI is likely to have the C1 point group. Vibrational assignments are suggested based on group frequencies, the expected reactions in the sol-gel process and the vibrational studies of some related molecules. From the experimental infrared spectra of xerogels annealed at different temperatures and from the thermal-gravimetric analysis, it is found that the TTPI xerogel decomposes at around 450°C with silica being the major decomposition product. A cyclic voltammetric study of the metal electrodes coated with different concentrations of TTPI ranging from 5% to 42% (v/v) has shown that the films with high concentrations of sol would provide better corrosion protection for aluminum and copper.

Casting new physicochemical light on the fundamental biological processes in single living cells by using Raman microspectroscopy

This Personal Account highlights the capabilities of spontaneous Raman microspectroscopy for studying fundamental biological processes in a single living cell. Raman microspectroscopy provides time- and space-resolved vibrational Raman spectra that contain detailed information on the structure and dynamics of biomolecules in a cell. By using yeast as a model system, we have made great progress in the development of this methodology. The results that we have obtained so far are described herein with an emphasis placed on how three cellular processes, that is, cell-division, respiration, and cell-death, are traced and elucidated with the use of time- and space-resolved structural information that is extracted from the Raman spectra. For cell-division, compositional- and structural changes of various biomolecules are observed during the course of the whole cell cycle. For respiration, the redox state of mitochondrial cytochromes, which is inferred from the resonance Raman bands of cytochromes, is used to evaluate the respiration activity of a single cell, as well as that of isolated mitochondrial particles. Special reference is made to the "Raman spectroscopic signature of life", which is a characteristic Raman band at 1602 cm(-1) that is found in yeast cells. This signature reflects the cellular metabolic activity and may serve as a measure of mitochondrial dysfunction. For cell-death, "cross-talk" between the mitochondria and the vacuole in a dying cell is suggested.

Membrane lipid phase transitions and phase organization studied by Fourier transform infrared spectroscopy

Fourier transform infrared (FTIR) spectroscopy is a powerful yet relatively inexpensive and convenient technique for studying the structure and organization of membrane lipids in their various polymorphic phases. This spectroscopic technique yields information about the conformation and dynamics of all regions of the lipid molecule simultaneously without the necessity of introducing extrinsic probes. In this review, we summarize some relatively recent FTIR spectroscopic studies of the structure and organization primarily of fully hydrated phospholipids in their biologically relevant lamellar crystalline, gel and liquid-crystalline phases, and show that interconversions between these bilayer phases can be accurately monitored by this technique. We also briefly discuss how the structure and organization of potentially biologically relevant nonlamellar micellar or reversed hexagonal lipid phases can be studied and how phase transitions between lamellar and nonlamellar phases, or between various nonlamellar phases, can be followed as well. In addition, we discuss the potential for FTIR spectroscopy to yield fairly high resolution structural information about phospholipid packing in lamellar crystalline or gel phases. Finally, we show that many, but not all of these FTIR approaches can also yield valuable information about lipid-protein interactions in membrane protein- or peptide-containing lipid membrane bilayer model or even in biological membranes. This article is part of a Special Issue entitled: FTIR in membrane proteins and peptide studies.

Adsorption of sodium dodecyl sulfate on Ge substrate: the effect of a low-polarity solvent

This paper describes the adsorption of sodium dodecyl sulfate (SDS) molecules in a low polar solvent on Ge substrate by using Fourier transform infrared-attenuated total reflection (FTIR-ATR) spectroscopy and atomic force microscopy (AFM). The maximum SDS amount adsorbed is (5.0 ± 0.3) × 10¹⁴ molecules cm⁻² in CHCl₃, while with the use of CCl₄ as subphase the ability of SDS adsorbed is 48% lower. AFM images show that depositions are highly disordered over the interface, and it was possible to establish that the size of the SDS deposition is around 30–40 nm over the Ge surface. A complete description of the infrared spectroscopic bands for the head and tail groups in the SDS molecule is also provided.

Infrared Spectroscopy of Anionic, Cationic, and Zwitterionic Surfactants

This paper describes the ordering degree of anionic, cationic, and zwitterionic surfactants with the increase of their packing density on Ge substrate by using Fourier transform infrared-attenuated total reflection (FTIR-ATR) spectroscopy. This work shows new insights on the conformational order of sodium dodecyl sulfate (SDS), N-hexadecyl-N-N-dimethyl-3-ammonio-1-propane-sulfonate (HPS), hexadecyl-trimethylammonium bromide (CTAB), and dodecyl trimethylammonium bromide (DTAB). DFT and semiempirical calculations are also performed in order to evaluate the effect of headgroup hydration and counterion. The CH2 asymmetric and symmetric stretching bands for the SDS molecule show a shift of 1.7 and 0.9 cm−1 to higher frequencies as the packing density increases, while it is observed a shift of 2.6 and 2.7 cm−1 for the HPS molecule, respectively. The DTAB molecule shows a shift of 4.5 cm−1 to lower frequencies for both CH2 asymmetric and symmetric stretching bands as the packing density increases, indicating the decrease of gauche conformations and the increase of all-trans conformations over the aliphatic chain.

Chemical reactions in dense monolayers: in situ thermal cleavage of grafted esters for preparation of solid surfaces functionalized with carboxylic acids

The thermodynamics of a chemical reaction confined at a solid surface was investigated through kinetic measurements of a model unimolecular reaction. The thermal cleavage of ester groups grafted at the surface of solid silica was investigated together with complementary physicochemical characterization of the grafted species. The ester molecules were chemically grafted to the silica surface and subsequently cleaved into the carboxylic acids. A grafting process of a reproducible monolayer was designed using the reaction of monofunctional organosilane from its gas phase. The thermal deprotection step of the ester end-group was investigated. The thermal deprotection reaction behaves in quite a specific manner when it is conducted at a surface in a grafted layer. Different organosilane molecules terminated by methyl, isopropyl and tert-butyl ester groups were grafted to silica surface; such functionalized materials were characterized by elemental analysis, IR and NMR spectroscopy, and thermogravimetric analysis, and the thermodynamic parameters of the thermal elimination reaction at the surface were measured. The limiting factor of such thermal ester cleavage reaction is the thermal stability of grafted ester group according to the temperature order: tert-butyl < i-propyl < methyl. Methyl ester groups were not selectively cleaved by temperature. The thermal deprotection of i-propyl ester groups took place at a temperature close to the thermal degradation of the organofunctional tail of the silane. The low thermolysis temperature of the grafted tert-butyl esters allowed their selective cleavage. There is a definite influence of the surface on the reaction. The enthalpy of activation is lower than in the gas phase because of the polarity of the reaction site. The major contribution is entropic; the negative entropy of activation comes from lateral interactions with the neighbor grafted molecules because of the high grafting density. Such reaction is an original strategy to functionalize the silica surface by carboxylic acid groups by means of a simple, reproducible, and efficient process involving in situ thermolysis of ester groups.

Adsorption of fatty acids on iron (hydr)oxides from aqueous solutions

The interaction of iron (hydr)oxides with fatty acids is related to many industrial and natural processes. To resolve current controversies about the adsorption configurations of fatty acids and the conditions of the maximum hydrophobicity of the minerals, we perform a detailed study of the adsorption of sodium laurate (dodecanoate) on 150 nm hematite (α-Fe(2)O(3)) particles as a model system. The methods used include in situ FTIR spectroscopy, ex situ X-ray photoelectron spectroscopy (XPS), measurements of the adsorption isotherm and contact angle, as well as the density functional theory (DFT) calculations. We found that the laurate adlayer is present as a mixture of inner-sphere monodentate mononuclear (ISMM) and outer-sphere (OS) hydration shared complexes independent of the solution pH. Protonation of the OS complexes does not influence the conformational order of the surfactant tails. One monolayer, which is filled through the growth of domains and is reached at the micellization/precipitation edge of laurate, makes the particles superhydrophobic. These results contradict previous models of the fatty acid adsorption and suggest new interpretation of literature data. Finally, we discovered that the fractions of both the OS laurate and its molecular form increase in D(2)O, which can be used for interpreting complex spectra. We discuss shortcomings of vibrational spectroscopy in determining the interfacial coordination of carboxylate groups. This work advances the current understanding of the oxide-carboxylate interactions and the research toward improving performance of fatty acids as surfactants, dispersants, lubricants, and anticorrosion reagents.

Raman spectra of long chain hydrocarbons: anharmonic calculations, experiment and implications for imaging of biomembranes

First-principles anharmonic vibrational calculations are carried out for the Raman spectrum of the C-H stretching bands in dodecane, and for the C-D bands in the deuterated molecule. The calculations use the Vibrational Self-Consistent Field (VSCF) algorithm. The results are compared with liquid-state experiments, after smoothing the isolated-molecule sharp-line computed spectra. Very good agreement between the computed and experimental results is found for the two systems. The combined theoretical and experimental results provide insights into the spectrum, elucidating the roles of symmetric and asymmetric CH(3) and CH(2) hydrogenic stretches. This is expected to be very useful for the interpretation of spectra of long-chain hydrocarbons. The results show that anharmonic effects on the spectrum are large. On the other hand, vibrational degeneracy effects seem to be rather modest at the resolution of the experiments. The degeneracy effects may have more pronounced manifestations in higher-resolution experiments. The results show that first-principles anharmonic vibrational calculations for hydrocarbons are feasible, in good agreement with experiment, opening the way for applications to many similar systems. The results may be useful for the analysis of CARS imaging of lipids, for which dodecane is a representative molecule. It is suggested that first-principles vibrational calculations may be useful also for CARS imaging of other systems.

The effect of pressure on the phase transition behavior of tridecane, pentadecane, and heptadecane: a Fourier transform infrared spectroscopy study

The effect of pressure on the phase transition behavior of tridecane (C(13)), pentadecane (C(15)), and heptadecane (C(17)) has been investigated up to 489, 220, and 387 MPa, respectively, using Fourier transform infrared spectroscopy at 25 °C. The transition between the high pressure ordered (HPO) and high pressure rotator (HPR) phases has been observed in the pressure ranges of 270-220, 106-95, and 152-181 MPa for C(13), C(15), and C(17), respectively, and the transition between the HPR and liquid phases was observed in the pressure ranges of 171-112, 73-47, and 43-70 MPa for C(13), C(15), and C(17), respectively. The P(1)+P(3) band of the methylene rocking mode exhibits factor group splitting caused by intermolecular vibrational coupling. This was observed in both the HPO and HPR phases, while the P(1)+P(3) band did not split in the liquid phase. The separation of the peaks in the P(1)+P(3) band changed discontinuously at the HPO-HPR and HPR-liquid phase transitions, even though the separation is known to change continuously in the transition from the liquid to the high temperature rotator (HTR) phase. In the HPR phase, the ratio of the intensities of the higher and lower frequency components in the P(1)+P(3) doublet is roughly unity independent of pressure, while it is known to be much less than unity in the HTR phase. The separation of the P(1)+P(3) doublet in the HPR phase is found to be larger for longer alkanes. From the intensity ratio, a large proportion of alkane molecules is believed to participate in intermolecular vibrational coupling and possess herringbone-type short-range positional order in the HPR phase. Conversely, in the HTR phase only small proportion of alkane molecules participate in intermolecular vibrational coupling. From the pressure dependence of the separation of the doublet, intermolecular vibrational coupling and herringbone-type short-range positional order is considered to change discontinuously at the HPR-liquid phase transition, while they are reported to change continuously at the HTR-liquid phase transition. The HPR-liquid phase transition is governed by the effect of molecular packing while the HTR-liquid phase transition is predominantly governed by the difference in entropy between the herringbone-type and parallel-type packing.