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Watson PD, Meizyte G, Pearcy PAJ, Brewer EI, Green AE, Robertson C, Paterson MJ, Mackenzie SR. Infrared spectra and fragmentation dynamics of isotopologue-selective mixed-ligand complexes. Phys Chem Chem Phys 2024; 26:16589-16596. [PMID: 38814318 DOI: 10.1039/d4cp00978a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/31/2024]
Abstract
Isolated mixed-ligand complexes provide tractable model systems in which to study competitive and cooperative binding effects as well as controlled energy flow. Here, we report spectroscopic and isotopologue-selective infrared photofragmentation dynamics of mixed gas-phase Au(12/13CO)n(N2O)m+ complexes. The rich infrared action spectra, which are reproduced well using simulations of calculated lowest energy structures, clarify previous ambiguities in the assignment of vibrational bands, especially accidental coincidence of CO and N2O bands. The fragmentation dynamics exhibit the same unexpected behaviour as reported previously in which, once CO loss channels are energetically accessible, these dominate the fragmentation branching ratios, despite the much lower binding energy of N2O. We have investigated the dynamics computationally by considering anharmonic couplings between a relevant subset of normal modes involving both ligand stretch and intermolecular modes. Discrepancies between correlated and uncorrelated model fit to the ab initio potential energy curves are quantified using a Boltzmann sampled root mean squared deviation providing insight into efficiency of vibrational energy transfer between high frequency ligand stretches and the softer intermolecular modes which break during fragmentation.
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Affiliation(s)
- Peter D Watson
- Department of Chemistry, University of Oxford, Physical and Theoretical Chemistry Laboratory, South Parks Road, Oxford, OX1 3QZ, UK.
| | - Gabriele Meizyte
- Department of Chemistry, University of Oxford, Physical and Theoretical Chemistry Laboratory, South Parks Road, Oxford, OX1 3QZ, UK.
| | - Philip A J Pearcy
- Department of Chemistry, University of Oxford, Physical and Theoretical Chemistry Laboratory, South Parks Road, Oxford, OX1 3QZ, UK.
| | - Edward I Brewer
- Department of Chemistry, University of Oxford, Physical and Theoretical Chemistry Laboratory, South Parks Road, Oxford, OX1 3QZ, UK.
| | - Alice E Green
- Department of Chemistry, University of Oxford, Physical and Theoretical Chemistry Laboratory, South Parks Road, Oxford, OX1 3QZ, UK.
| | - Christopher Robertson
- School of Engineering & Physical Sciences, Heriot-Watt University, Edinburgh, Scotland, EH14 4AS, UK
| | - Martin J Paterson
- School of Engineering & Physical Sciences, Heriot-Watt University, Edinburgh, Scotland, EH14 4AS, UK
| | - Stuart R Mackenzie
- Department of Chemistry, University of Oxford, Physical and Theoretical Chemistry Laboratory, South Parks Road, Oxford, OX1 3QZ, UK.
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2
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Steenbakkers K, van Boxtel T, Groenenboom GC, Asvany O, Redlich B, Schlemmer S, Brünken S. Leak-out spectroscopy as alternative method to rare-gas tagging for the Renner-Teller perturbed HCCH + and DCCD + ions. Phys Chem Chem Phys 2024; 26:2692-2703. [PMID: 38175663 PMCID: PMC10793980 DOI: 10.1039/d3cp04989b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2023] [Accepted: 12/05/2023] [Indexed: 01/05/2024]
Abstract
Infrared messenger-tagging predissociation action spectroscopy (IRPD) is a well-established technique to record vibrational spectra of reactive molecular ions. One of its major drawbacks is that the spectrum of the messenger-ion complex is taken instead of that of the bare ion. In particular for small open-shell species, such as the Renner-Teller (RT) affected HCCH+ and DCCD+, the attachment of the tag may have a significant impact on the spectral features. Here we present the application of the novel leak-out spectroscopy (LOS) as a tag-free method to record the cis-bending of the HCCH+ (∼700 cm-1) and DCCD+ cations (∼520 cm-1), using a cryogenic ion trap end user station at the FELIX laboratory. We demonstrate that the obtained LOS spectrum is equivalent to a previously recorded laser-induced reactions (LIR) spectrum of HCCH+. The bending modes are the energetically lowest-lying vibrational modes targeted with LOS so far, showing its potential as a universal broadband spectroscopic technique. Furthermore, we have investigated the effect of the rare gas attachment by recording the vibrational spectra of Ne- and Ar-tagged HCCH+. We found that the Ne-attachment led to a shift in band positions and change in relative intensities, while the Ar-attachment even led to a complete quenching of the RT splitting, showing the importance of using a tag-free method for RT affected systems. The results are interpreted with the help of high-level ab initio calculations in combination with an effective Hamiltonian approach.
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Affiliation(s)
- Kim Steenbakkers
- Radboud University, FELIX Laboratory, Institute for Molecules and Materials, Nijmegen, The Netherlands.
| | - Tom van Boxtel
- Radboud University, FELIX Laboratory, Institute for Molecules and Materials, Nijmegen, The Netherlands.
| | - Gerrit C Groenenboom
- Radboud University, Institute for Molecules and Materials, Nijmegen, The Netherlands
| | - Oskar Asvany
- I. Physikalisches Institut, Universität zu Köln, Köln, Germany
| | - Britta Redlich
- Radboud University, FELIX Laboratory, Institute for Molecules and Materials, Nijmegen, The Netherlands.
| | | | - Sandra Brünken
- Radboud University, FELIX Laboratory, Institute for Molecules and Materials, Nijmegen, The Netherlands.
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3
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Ito Y, Kominato M, Nakashima Y, Ohshimo K, Misaizu F. Fragment imaging in the infrared photodissociation of the Ar-tagged protonated water clusters H 3O +-Ar and H +(H 2O) 2-Ar. Phys Chem Chem Phys 2023; 25:9404-9412. [PMID: 36928842 DOI: 10.1039/d3cp00469d] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/08/2023]
Abstract
Infrared photodissociation of protonated water clusters with an Ar atom, namely H3O+-Ar and H+(H2O)2-Ar, was investigated by an imaging technique for mass-selected ions, to reveal the intra- and intermolecular vibrational dynamics. The presented system has the advantage of achieving fragment ion images with the cluster size- and mode-selective photoexcitation of each OH stretching vibration. Translational energy distributions of photofragments were obtained from the images upon the excitation of the bound (νb) and free (νf) OH stretching vibrations. The energy fractions in the translational motion were compared between νbI and νfI in H3O+-Ar or between νbII and νfII in H+(H2O)2-Ar, where the labels "I" and "II" represent H3O+-Ar and H+(H2O)2-Ar, respectively. In H3O+-Ar, the νfI excitation exhibited a smaller translational energy than νbI. This result can be explained by the higher vibrational energy of νfI, which enabled it to produce bending (ν4) excited H3O+ fragments that should be favored according to the energy-gap model. In contrast to H3O+-Ar, the νbII excitation of an Ar-tagged H2O subunit and the νfII excitation of an untagged H2O subunit resulted in very similar translational energy distributions in H+(H2O)2-Ar. The similar energy fractions independent of the excited H2O subunits suggested that the νbII and νfII excited states relaxed into a common intermediate state, in which the vibrational energy was delocalized within the H2O-H+-H2O moiety. However, the translational energy distributions for H+(H2O)2-Ar did not agree with a statistical dissociation model, which implied another aspect of the process, that is, Ar dissociation via incomplete energy randomization in the whole H+(H2O)2-Ar cluster.
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Affiliation(s)
- Yuri Ito
- Department of Chemistry, Graduate School of Science, Tohoku University, 6-3 Aoba, Aramaki, Aoba-ku, Sendai 980-8578, Japan.
| | - Mizuhiro Kominato
- Department of Chemistry, Graduate School of Science, Tohoku University, 6-3 Aoba, Aramaki, Aoba-ku, Sendai 980-8578, Japan.
| | - Yuji Nakashima
- Department of Chemistry, Graduate School of Science, Tohoku University, 6-3 Aoba, Aramaki, Aoba-ku, Sendai 980-8578, Japan.
| | - Keijiro Ohshimo
- Department of Chemistry, Graduate School of Science, Tohoku University, 6-3 Aoba, Aramaki, Aoba-ku, Sendai 980-8578, Japan.
| | - Fuminori Misaizu
- Department of Chemistry, Graduate School of Science, Tohoku University, 6-3 Aoba, Aramaki, Aoba-ku, Sendai 980-8578, Japan.
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4
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Niedner‐Schatteburg G, Kappes MM. Advancing Inorganic Coordination Chemistry by Spectroscopy of Isolated Molecules: Methods and Applications. Chemistry 2021; 27:15027-15042. [PMID: 34636096 PMCID: PMC8596414 DOI: 10.1002/chem.202102815] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2021] [Indexed: 12/14/2022]
Abstract
A unique feature of the work carried out in the Collaborative Research Center 3MET continues to be its emphasis on innovative, advanced experimental methods which hyphenate mass-selection with further analytical tools such as laser spectroscopy for the study of isolated molecular ions. This allows to probe the intrinsic properties of the species of interest free of perturbing solvent or matrix effects. This review explains these methods and uses examples from past and ongoing 3MET studies of specific classes of multicenter metal complexes to illustrate how coordination chemistry can be advanced by applying them. As a corollary, we will show how the challenges involved in providing well-defined, for example monoisomeric, samples of the molecular ions have helped to further improve the methods themselves thus also making them applicable to many other areas of chemistry.
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Affiliation(s)
| | - Manfred M. Kappes
- Institute of Physical Chemistry and Institute of NanotechnologyKarlsruhe Institute of Technology (KIT)76128KarlsruheGermany
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5
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Harrilal CP, DeBlase AF, McLuckey SA, Zwier TS. Two-Color IRMPD Applied to Conformationally Complex Ions: Probing Cold Ion Structure and Hot Ion Unfolding. J Phys Chem A 2021; 125:9394-9404. [PMID: 34644093 DOI: 10.1021/acs.jpca.1c08388] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Two-color infrared multiphoton dissociation (2C-IRMPD) spectroscopy is a technique that mitigates spectral distortions due to nonlinear absorption that is inherent to one-color IRMPD. We use a 2C-IRMPD scheme that incorporates two independently tunable IR sources, providing considerable control over the internal energy content and type of spectrum obtained by varying the trap temperature, the time delays and fluences of the two infrared lasers, and whether the first or second laser wavelength is scanned. In this work, we describe the application of this variant of 2C-IRMPD to conformationally complex peptide ions. The 2C-IRMPD technique is used to record near-linear action spectra of both cations and anions with temperatures ranging from 10 to 300 K. We also determine the conditions under which it is possible to record IR spectra of single conformers in a conformational mixture. Furthermore, we demonstrate the capability of the technique to explore conformational unfolding by recording IR spectra with widely varying internal energy in the ion. The protonated peptide ions YGGFL (NH3+-Tyr-Gly-Gly-Phe-Leu, Leu-enkephalin) and YGPAA (NH3+-Tyr-Gly-Pro-Ala-Ala) are used as model systems for exploring the advantages and disadvantages of the method when applied to conformationally complex ions.
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Affiliation(s)
- Christopher P Harrilal
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907-2084, United States
| | - Andrew F DeBlase
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907-2084, United States
| | - Scott A McLuckey
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907-2084, United States
| | - Timothy S Zwier
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907-2084, United States.,Combustion Research Facility, Sandia National Laboratories, Livermore, California 94550, United States
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6
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Green AE, Brown RH, Meizyte G, Mackenzie SR. Spectroscopy and Infrared Photofragmentation Dynamics of Mixed Ligand Ion-Molecule Complexes: Au(CO) x(N 2O) y. J Phys Chem A 2021; 125:7266-7277. [PMID: 34433267 DOI: 10.1021/acs.jpca.1c05800] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We report a combined experimental and computational study of the structure and fragmentation dynamics of mixed ligand gas-phase ion-molecule complexes. Specifically, we have studied the infrared spectroscopy and vibrationally induced photofragmentation dynamics of mass-selected Au(CO)x(N2O)y+ complexes. The structures can be understood on the basis of local CO and N2O chromophores in different solvation shells with CO found preferentially in the core. Rich fragmentation dynamics are observed as a function of complex composition and the vibrational mode excited. The dynamics are characterized in terms of branching ratios for different ligand loss channels in light of calculated internal energy distributions. Intramolecular vibrational redistribution appears to be rapid, and dissociation is observed into all energetically accessible channels with little or no evidence for preferential breaking of the weakest intermolecular interactions.
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Affiliation(s)
- Alice E Green
- Department of Chemistry, Physical and Theoretical Chemistry Laboratory, University of Oxford, South Parks Road, Oxford, United Kingdom OX1 3QZ
| | - Rachael H Brown
- Department of Chemistry, Physical and Theoretical Chemistry Laboratory, University of Oxford, South Parks Road, Oxford, United Kingdom OX1 3QZ
| | - Gabriele Meizyte
- Department of Chemistry, Physical and Theoretical Chemistry Laboratory, University of Oxford, South Parks Road, Oxford, United Kingdom OX1 3QZ
| | - Stuart R Mackenzie
- Department of Chemistry, Physical and Theoretical Chemistry Laboratory, University of Oxford, South Parks Road, Oxford, United Kingdom OX1 3QZ
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7
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Bejjani R, Roucou A, Urbain X, Moshkunov K, Vanlancker G, Lauzin C. STARGATE: A new instrument for high-resolution photodissociation spectroscopy of cold ionic species. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2021; 92:033307. [PMID: 33820109 DOI: 10.1063/5.0039627] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2020] [Accepted: 02/12/2021] [Indexed: 06/12/2023]
Abstract
Spectroscopy of transient anions and radicals by gated and accelerated time-of-flight experiment is a new spectrometer developed in UCLouvain. This instrument measures high-resolution photodissociation spectra of mass-selected ions by the combination of a time-of-flight spectrometer including a specific gating, bunching, and re-referencing unit with a nanosecond pulsed dye laser, a pulsed deflection, and an energy selector. The ionic species are generated in a supersonic jet expansion by means of an electric discharge or by the impact of electrons coming from an electron gun. The versatility of the molecular systems that can be addressed by this instrument is illustrated by the presentation of mass spectra of cations, anions, and ionic clusters formed from different gas mixtures and backing pressures. The high-resolution spectrum of the A~2Σ+(002)←X~2Π3/2(000) and A~2Σ+(002)←X~2Π1/2(000) rovibronic bands of N2O+ has been measured and analyzed to provide refined molecular parameters in the A~2Σ+(002) upper state. The A~2Σ+(002)←X~2Π3/2(000) band has been used to evaluate the quality of the experimental setup in terms of rotational temperature, time of measurement for certain signal to noise ratio, and the accuracy of the determination of the wavenumber scale.
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Affiliation(s)
- Raghed Bejjani
- Institute of Condensed Matter and Nanosciences, Université catholique de Louvain, Louvain-la-Neuve B-1348, Belgium
| | - Anthony Roucou
- Institute of Condensed Matter and Nanosciences, Université catholique de Louvain, Louvain-la-Neuve B-1348, Belgium
| | - Xavier Urbain
- Institute of Condensed Matter and Nanosciences, Université catholique de Louvain, Louvain-la-Neuve B-1348, Belgium
| | - Konstantin Moshkunov
- Institute of Condensed Matter and Nanosciences, Université catholique de Louvain, Louvain-la-Neuve B-1348, Belgium
| | - Guilhem Vanlancker
- Institute of Condensed Matter and Nanosciences, Université catholique de Louvain, Louvain-la-Neuve B-1348, Belgium
| | - Clément Lauzin
- Institute of Condensed Matter and Nanosciences, Université catholique de Louvain, Louvain-la-Neuve B-1348, Belgium
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8
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Water Radical Cations in the Gas Phase: Methods and Mechanisms of Formation, Structure and Chemical Properties. Molecules 2020; 25:molecules25153490. [PMID: 32751962 PMCID: PMC7435662 DOI: 10.3390/molecules25153490] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2020] [Revised: 07/28/2020] [Accepted: 07/29/2020] [Indexed: 12/02/2022] Open
Abstract
Water radical cations, (H2O)n+•, are of great research interest in both fundamental and applied sciences. Fundamental studies of water radical reactions are important to better understand the mechanisms of natural processes, such as proton transfer in aqueous solutions, the formation of hydrogen bonds and DNA damage, as well as for the discovery of new gas-phase reactions and products. In applied science, the interest in water radicals is prompted by their potential in radiobiology and as a source of primary ions for selective and sensitive chemical ionization. However, in contrast to protonated water clusters, (H2O)nH+, which are relatively easy to generate and isolate in experiments, the generation and isolation of radical water clusters, (H2O)n+•, is tremendously difficult due to their ultra-high reactivity. This review focuses on the current knowledge and unknowns regarding (H2O)n+• species, including the methods and mechanisms of their formation, structure and chemical properties.
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9
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Matsuda Y, Hirano Y, Mizutani S, Sakai D, Fujii A, Maeda S, Ohno K. Migrations and Catalytic Action of Water Molecules in the Ionized Formamide-(H 2O) 2 Cluster. J Phys Chem A 2020; 124:2802-2807. [PMID: 32187496 DOI: 10.1021/acs.jpca.0c00637] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Isomerization dynamics involving the migrations, proton transfer reaction, and catalytic actions of water molecules upon vertical ionization of the formamide (FA)-(H2O)2 cluster is investigated by the infrared spectroscopy and theoretical reaction path search calculation. The infrared spectroscopic result indicates the [FA-(H2O)2]+ cation has the hydrogen-bonded structure of the enol isomer cation of formamide and the water dimer. This structure is formed by proton transfer from the CH bond to the carbonyl group through the catalytic action of the water molecules. The isomerization paths involving this enolization in ionized FA-(H2O)2 are explored by using the anharmonic downward distortion following method. We found multiple enolization paths which accompany proton exchanges among the formamide moiety and water molecules through the catalytic actions of the water molecules.
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Affiliation(s)
- Yoshiyuki Matsuda
- Department of Chemistry, Graduate School of Science, Tohoku University, 6-3, Aramaki Aza-Aoba, Aoba-ku, Sendai, 980-8578, Japan
| | - Yutaro Hirano
- Department of Chemistry, Graduate School of Science, Tohoku University, 6-3, Aramaki Aza-Aoba, Aoba-ku, Sendai, 980-8578, Japan
| | - Shinichi Mizutani
- Department of Chemistry, Graduate School of Science, Tohoku University, 6-3, Aramaki Aza-Aoba, Aoba-ku, Sendai, 980-8578, Japan
| | - Daichi Sakai
- Department of Chemistry, Graduate School of Science, Tohoku University, 6-3, Aramaki Aza-Aoba, Aoba-ku, Sendai, 980-8578, Japan
| | - Asuka Fujii
- Department of Chemistry, Graduate School of Science, Tohoku University, 6-3, Aramaki Aza-Aoba, Aoba-ku, Sendai, 980-8578, Japan
| | - Satoshi Maeda
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan.,Institute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University, Sapporo, 001-0021, Japan.,National Institute for Materials Science (NIMS) Research and Services Division of Materials Data and Integrated System (MaDIS) Tsukuba, 305-0044, Japan
| | - Koichi Ohno
- Department of Chemistry, Graduate School of Science, Tohoku University, 6-3, Aramaki Aza-Aoba, Aoba-ku, Sendai, 980-8578, Japan.,Institute for Quantum Chemical Exploration, 13F Area Shinagawa, Konan 1-9-36, Minato-ku, Tokyo, 108-0075, Japan
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10
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Li Y, Song W, Jiang N, Zhang Z, Xie M, Hu Y. Structural rearrangement of the acrylonitrile (AN) cluster in the gas phase under VUV one-photon radiation explored by mass-selected infrared spectroscopy. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2020; 226:117620. [PMID: 31610467 DOI: 10.1016/j.saa.2019.117620] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2019] [Revised: 07/27/2019] [Accepted: 10/06/2019] [Indexed: 06/10/2023]
Abstract
Acrylonitrile (AN), one of the most abundant nitriles in space, is considered to closely relate to the formation of interstellar prebiotic nitrogen-containing aromatics. Herein, we measured the vibrational spectra of acrylonitrile cluster cations (AN)2,3+ in a supersonic jet using infrared (IR) dissociation with vacuum-ultraviolet (VUV) photoionization and time-of-flight mass spectroscopy. Interestingly, the observed IR spectra demonstrate that a new molecular ion [Formula: see text] , is generated from the dimer and trimer of AN upon VUV single-photo ionization. Calculation results reveal that the new molecular cations can be generated through a relative low energy barrier after ionization of the neutral (AN)2. However, the reaction pathways are barrierless for the trimer, in which the third solvent AN acts as a catalyst. The mechanisms of those reactions also have been discussed in detail. This study contributes to a deeper understanding of ion-molecule reaction in gas-phase and the quest for the formation of prebiotic N -containing molecules in the outer space.
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Affiliation(s)
- Yujian Li
- MOE Key Laboratory of Laser Life Science & Institute of Laser Life Science, College of Biophotonics, Guangzhou Key Laboratory of Spectral Analysis and Functional Probes, South China Normal University, Guangzhou, 510631, PR China
| | - Wentao Song
- MOE Key Laboratory of Laser Life Science & Institute of Laser Life Science, College of Biophotonics, Guangzhou Key Laboratory of Spectral Analysis and Functional Probes, South China Normal University, Guangzhou, 510631, PR China
| | - Ningjing Jiang
- MOE Key Laboratory of Laser Life Science & Institute of Laser Life Science, College of Biophotonics, Guangzhou Key Laboratory of Spectral Analysis and Functional Probes, South China Normal University, Guangzhou, 510631, PR China
| | - Zhaoli Zhang
- MOE Key Laboratory of Laser Life Science & Institute of Laser Life Science, College of Biophotonics, Guangzhou Key Laboratory of Spectral Analysis and Functional Probes, South China Normal University, Guangzhou, 510631, PR China
| | - Min Xie
- MOE Key Laboratory of Laser Life Science & Institute of Laser Life Science, College of Biophotonics, Guangzhou Key Laboratory of Spectral Analysis and Functional Probes, South China Normal University, Guangzhou, 510631, PR China.
| | - Yongjun Hu
- MOE Key Laboratory of Laser Life Science & Institute of Laser Life Science, College of Biophotonics, Guangzhou Key Laboratory of Spectral Analysis and Functional Probes, South China Normal University, Guangzhou, 510631, PR China.
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11
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Maitre P, Scuderi D, Corinti D, Chiavarino B, Crestoni ME, Fornarini S. Applications of Infrared Multiple Photon Dissociation (IRMPD) to the Detection of Posttranslational Modifications. Chem Rev 2019; 120:3261-3295. [PMID: 31809038 DOI: 10.1021/acs.chemrev.9b00395] [Citation(s) in RCA: 40] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Infrared multiple photon dissociation (IRMPD) spectroscopy allows for the derivation of the vibrational fingerprint of molecular ions under tandem mass spectrometry (MS/MS) conditions. It provides insight into the nature and localization of posttranslational modifications (PTMs) affecting single amino acids and peptides. IRMPD spectroscopy, which takes advantage of the high sensitivity and resolution of MS/MS, relies on a wavelength specific fragmentation process occurring on resonance with an IR active vibrational mode of the sampled species and is well suited to reveal the presence of a PTM and its impact in the molecular environment. IRMPD spectroscopy is clearly not a proteomics tool. It is rather a valuable source of information for fixed wavelength IRMPD exploited in dissociation protocols of peptides and proteins. Indeed, from the large variety of model PTM containing amino acids and peptides which have been characterized by IRMPD spectroscopy, specific signatures of PTMs such as phosphorylation or sulfonation can be derived. High throughput workflows relying on the selective fragmentation of modified peptides within a complex mixture have thus been proposed. Sequential fragmentations can be observed upon IR activation, which do not only give rise to rich fragmentation patterns but also overcome low mass cutoff limitations in ion trap mass analyzers. Laser-based vibrational spectroscopy of mass-selected ions holding various PTMs is an increasingly expanding field both in the variety of chemical issues coped with and in the technological advancements and implementations.
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Affiliation(s)
- Philippe Maitre
- Laboratoire de Chimie Physique (UMR8000), Université Paris-Sud, CNRS, Université Paris Saclay, 91405, Orsay, France
| | - Debora Scuderi
- Laboratoire de Chimie Physique (UMR8000), Université Paris-Sud, CNRS, Université Paris Saclay, 91405, Orsay, France
| | - Davide Corinti
- Dipartimento di Chimica e Tecnologie del Farmaco, Università di Roma "La Sapienza", I-00185 Roma, Italy
| | - Barbara Chiavarino
- Dipartimento di Chimica e Tecnologie del Farmaco, Università di Roma "La Sapienza", I-00185 Roma, Italy
| | - Maria Elisa Crestoni
- Dipartimento di Chimica e Tecnologie del Farmaco, Università di Roma "La Sapienza", I-00185 Roma, Italy
| | - Simonetta Fornarini
- Dipartimento di Chimica e Tecnologie del Farmaco, Università di Roma "La Sapienza", I-00185 Roma, Italy
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12
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Martens J, van Outersterp RE, Vreeken RJ, Cuyckens F, Coene KLM, Engelke UF, Kluijtmans LAJ, Wevers RA, Buydens LMC, Redlich B, Berden G, Oomens J. Infrared ion spectroscopy: New opportunities for small-molecule identification in mass spectrometry - A tutorial perspective. Anal Chim Acta 2019; 1093:1-15. [PMID: 31735202 DOI: 10.1016/j.aca.2019.10.043] [Citation(s) in RCA: 49] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2019] [Revised: 10/19/2019] [Accepted: 10/21/2019] [Indexed: 01/21/2023]
Abstract
Combining the individual analytical strengths of mass spectrometry and infrared spectroscopy, infrared ion spectroscopy is increasingly recognized as a powerful tool for small-molecule identification in a wide range of analytical applications. Mass spectrometry is itself a leading analytical technique for small-molecule identification on the merit of its outstanding sensitivity, selectivity and versatility. The foremost shortcoming of the technique, however, is its limited ability to directly probe molecular structure, especially when contrasted against spectroscopic techniques. In infrared ion spectroscopy, infrared vibrational spectra are recorded for mass-isolated ions and provide a signature that can be matched to reference spectra, either measured from standards or predicted using quantum-chemical calculations. Here we present an overview of the potential for this technique to develop into a versatile analytical method for identifying molecular structures in mass spectrometry-based analytical workflows. In this tutorial perspective, we introduce the reader to the technique of infrared ion spectroscopy and highlight a selection of recent experimental advances and applications in current analytical challenges, in particular in the field of untargeted metabolomics. We report on the coupling of infrared ion spectroscopy with liquid chromatography and present experiments that serve as proof-of-principle examples of strategies to address outstanding challenges.
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Affiliation(s)
- Jonathan Martens
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7, 6525 ED, Nijmegen, the Netherlands.
| | - Rianne E van Outersterp
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7, 6525 ED, Nijmegen, the Netherlands
| | - Rob J Vreeken
- Drug Metabolism & Pharmacokinetics, Janssen R&D, Beerse, Belgium
| | - Filip Cuyckens
- Drug Metabolism & Pharmacokinetics, Janssen R&D, Beerse, Belgium
| | - Karlien L M Coene
- Department of Laboratory Medicine, Translational Metabolic Laboratory, Radboud University Medical Center, Nijmegen, the Netherlands
| | - Udo F Engelke
- Department of Laboratory Medicine, Translational Metabolic Laboratory, Radboud University Medical Center, Nijmegen, the Netherlands
| | - Leo A J Kluijtmans
- Department of Laboratory Medicine, Translational Metabolic Laboratory, Radboud University Medical Center, Nijmegen, the Netherlands
| | - Ron A Wevers
- Department of Laboratory Medicine, Translational Metabolic Laboratory, Radboud University Medical Center, Nijmegen, the Netherlands
| | - Lutgarde M C Buydens
- Radboud University, Institute for Molecules and Materials, Chemometrics, Heyendaalseweg 135, 6525AJ, Nijmegen, the Netherlands
| | - Britta Redlich
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7, 6525 ED, Nijmegen, the Netherlands
| | - Giel Berden
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7, 6525 ED, Nijmegen, the Netherlands
| | - Jos Oomens
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7, 6525 ED, Nijmegen, the Netherlands; van't Hoff Institute for Molecular Sciences, University of Amsterdam, 1098XH, Amsterdam, Science Park 908, the Netherlands.
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13
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Zhang B, Huang QR, Jiang S, Chen LW, Hsu PJ, Wang C, Hao C, Kong X, Dai D, Yang X, Kuo JL, Jiang L. Infrared spectra of neutral dimethylamine clusters: An infrared-vacuum ultraviolet spectroscopic and anharmonic vibrational calculation study. J Chem Phys 2019; 150:064317. [DOI: 10.1063/1.5086095] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022] Open
Affiliation(s)
- Bingbing Zhang
- State Key Laboratory of Fine Chemicals, Dalian University of Technology, 2 Linggong Road, Dalian 116024, China
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian 116023, China
- University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, China
| | - Qian-Rui Huang
- Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei 10617, Taiwan
| | - Shukang Jiang
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian 116023, China
- University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, China
- Shanghai Advanced Research Institute, Chinese Academy of Sciences, 99 Haike Road, Shanghai 201210, China
- School of Physical Science and Technology, ShanghaiTech University, 319 Yueyang Road, Shanghai 200031, China
| | - Li-Wei Chen
- Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei 10617, Taiwan
| | - Po-Jen Hsu
- Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei 10617, Taiwan
| | - Chong Wang
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian 116023, China
- University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, China
| | - Ce Hao
- State Key Laboratory of Fine Chemicals, Dalian University of Technology, 2 Linggong Road, Dalian 116024, China
| | - Xiangtao Kong
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian 116023, China
| | - Dongxu Dai
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian 116023, China
| | - Xueming Yang
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian 116023, China
| | - Jer-Lai Kuo
- Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei 10617, Taiwan
| | - Ling Jiang
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian 116023, China
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14
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Jusko P, Brünken S, Asvany O, Thorwirth S, Stoffels A, van der Meer L, Berden G, Redlich B, Oomens J, Schlemmer S. The FELion cryogenic ion trap beam line at the FELIX free-electron laser laboratory: infrared signatures of primary alcohol cations. Faraday Discuss 2019; 217:172-202. [DOI: 10.1039/c8fd00225h] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
The FELion beamline – a cryogenic 22-pole trap for vibrational spectroscopy of molecular ions at the FELIX Laboratory.
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Affiliation(s)
- Pavol Jusko
- I. Physikalisches Institut
- Universität zu Köln
- 50937 Köln
- Germany
| | - Sandra Brünken
- I. Physikalisches Institut
- Universität zu Köln
- 50937 Köln
- Germany
- Radboud University
| | - Oskar Asvany
- I. Physikalisches Institut
- Universität zu Köln
- 50937 Köln
- Germany
| | - Sven Thorwirth
- I. Physikalisches Institut
- Universität zu Köln
- 50937 Köln
- Germany
| | - Alexander Stoffels
- I. Physikalisches Institut
- Universität zu Köln
- 50937 Köln
- Germany
- Radboud University
| | - Lex van der Meer
- Radboud University
- Institute for Molecules and Materials
- FELIX Laboratory
- 6525 ED Nijmegen
- The Netherlands
| | - Giel Berden
- Radboud University
- Institute for Molecules and Materials
- FELIX Laboratory
- 6525 ED Nijmegen
- The Netherlands
| | - Britta Redlich
- Radboud University
- Institute for Molecules and Materials
- FELIX Laboratory
- 6525 ED Nijmegen
- The Netherlands
| | - Jos Oomens
- Radboud University
- Institute for Molecules and Materials
- FELIX Laboratory
- 6525 ED Nijmegen
- The Netherlands
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15
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Bulychev VP, Buturlimova MV, Tokhadze KG. Calculation of vibrational spectroscopic and geometrical characteristics of the [F(HF) 2] - and [F(DF) 2] - complexes using the second-order vibrational perturbation theory and a 6D variational method. J Chem Phys 2018; 149:104306. [PMID: 30219019 DOI: 10.1063/1.5042059] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Vibrational spectroscopic and average geometrical parameters of the strong H-bonded complexes [F(HF)2]- and [F(DF)2]- are determined for the first time from nine-dimensional (9D) perturbative and 6D variational calculations. The frequencies and intensities for all fundamental and some combination and overtone transitions obtained by the method of second-order vibrational perturbation theory (VPT2) are reported. A two-fold decrease in the H-F (D-F) stretching band frequency and a more than ten-fold increase in the intensity of this band upon complexation are predicted. The theoretical frequencies for both isolated isotopologues are in satisfactory agreement (to better than 70 cm-1) with the scarce experimental data obtained in condensed phases. The main purpose of variational calculations is to analyze the intermode anharmonic coupling and the changes in the geometrical parameters upon vibrational excitation and H/D isotopic substitution. The equilibrium nuclear configuration and the 2D potential energy surface (PES) of [F(HF)2]- for H-F stretches are calculated in the MP2/6-311++G(3df,3pd), CCSD(T)/6-311++G(3df,3pd), CCSD(T)/aug-cc-pVTZ, and CCSD(T)/d-aug-cc-pVTZ approximations with the basis set superposition error taken into account. Anharmonic vibrational problems are solved by the variational method for 2D, 4D, and 6D systems of H-bond and H-F (D-F) stretches and in-plane bends. The VPT2 calculations and calculations of the PESs for 4D and 6D systems are performed in the MP2/6-311++G(3df,3pd) approximation. Comparison of variational anharmonic solutions for different vibrational subsystems demonstrates the influence of intermode anharmonic coupling on the mixing of wave functions and spectroscopic and geometrical characteristics. The inverse Ubbelohde effect is predicted and substantiated.
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Affiliation(s)
- V P Bulychev
- Department of Physics, St. Petersburg State University, St. Petersburg 199034, Russian Federation
| | - M V Buturlimova
- Department of Physics, St. Petersburg State University, St. Petersburg 199034, Russian Federation
| | - K G Tokhadze
- Department of Physics, St. Petersburg State University, St. Petersburg 199034, Russian Federation
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16
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Gerlich D. Infrared spectroscopy of cold trapped molecular ions using He-tagging. J CHIN CHEM SOC-TAIP 2018. [DOI: 10.1002/jccs.201800122] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- Dieter Gerlich
- Department of Physics; University of Technology; Chemnitz Germany
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17
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Matsuda Y, Xie M, Fujii A. An integrated experimental and theoretical reaction path search: analyses of the multistage reaction of an ionized diethylether dimer involving isomerization, proton transfer, and dissociation. Phys Chem Chem Phys 2018; 20:14331-14338. [DOI: 10.1039/c7cp08566d] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A multistage reaction involving isomerization, proton transfer, and dissociation of an ionized diethylether dimer is studied by combination of infrared spectroscopy, tandem mass spectrometry, and a theoretical reaction path search.
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Affiliation(s)
- Yoshiyuki Matsuda
- Department of Chemistry
- Graduate School of Science
- Tohoku University
- Sendai
- Japan
| | - Min Xie
- Department of Chemistry
- Graduate School of Science
- Tohoku University
- Sendai
- Japan
| | - Asuka Fujii
- Department of Chemistry
- Graduate School of Science
- Tohoku University
- Sendai
- Japan
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18
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Voss JM, Kregel SJ, Fischer KC, Garand E. IR-IR Conformation Specific Spectroscopy of Na +(Glucose) Adducts. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2018; 29:42-50. [PMID: 28956282 DOI: 10.1007/s13361-017-1813-x] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2017] [Revised: 09/08/2017] [Accepted: 09/12/2017] [Indexed: 05/14/2023]
Abstract
We report an IR-IR double resonance study of the structural landscape present in the Na+(glucose) complex. Our experimental approach involves minimal modifications to a typical IR predissociation setup, and can be carried out via ion-dip or isomer-burning methods, providing additional flexibility to suit different experimental needs. In the current study, the single-laser IR predissociation spectrum of Na+(glucose), which clearly indicates contributions from multiple structures, was experimentally disentangled to reveal the presence of three α-conformers and five β-conformers. Comparisons with calculations show that these eight conformations correspond to the lowest energy gas-phase structures with distinctive Na+ coordination. Graphical Abstract ᅟ.
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Affiliation(s)
- Jonathan M Voss
- Department of Chemistry, University of Wisconsin, 1101 University Ave., Madison, WI, 53706, USA
| | - Steven J Kregel
- Department of Chemistry, University of Wisconsin, 1101 University Ave., Madison, WI, 53706, USA
| | - Kaitlyn C Fischer
- Department of Chemistry, University of Wisconsin, 1101 University Ave., Madison, WI, 53706, USA
| | - Etienne Garand
- Department of Chemistry, University of Wisconsin, 1101 University Ave., Madison, WI, 53706, USA.
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19
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Jin S, Hu Y, Wang P, Zhan H, Lu Q, Liu F, Sheng L. Hydrogen bonding and dominant conformations of hydrated sugar analogue complexes using tetrahydrofurfuryl alcohol as the model sugar molecule. Phys Chem Chem Phys 2018; 20:7351-7360. [DOI: 10.1039/c7cp07935d] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Water molecules, which serve as both hydrogen bond donors and acceptors, have been found to influence the conformational landscape of gas-phase phenyl-β-d-glucopyranoside.
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Affiliation(s)
- Shan Jin
- MOE Key Laboratory of Laser Life Science & Institute of Laser Life Science
- College of Biophotonics
- South China Normal University
- Guangzhou 510631
- P. R. China
| | - Yongjun Hu
- MOE Key Laboratory of Laser Life Science & Institute of Laser Life Science
- College of Biophotonics
- South China Normal University
- Guangzhou 510631
- P. R. China
| | - Pengchao Wang
- MOE Key Laboratory of Laser Life Science & Institute of Laser Life Science
- College of Biophotonics
- South China Normal University
- Guangzhou 510631
- P. R. China
| | - Huaqi Zhan
- MOE Key Laboratory of Laser Life Science & Institute of Laser Life Science
- College of Biophotonics
- South China Normal University
- Guangzhou 510631
- P. R. China
| | - Qiao Lu
- MOE Key Laboratory of Laser Life Science & Institute of Laser Life Science
- College of Biophotonics
- South China Normal University
- Guangzhou 510631
- P. R. China
| | - Fuyi Liu
- National Synchrotron Radiation Laboratory
- University of Science and Technology of China
- Hefei
- P. R. China
| | - Liusi Sheng
- National Synchrotron Radiation Laboratory
- University of Science and Technology of China
- Hefei
- P. R. China
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20
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Smirmov LP, Kulagina TP. Features of the kinetics of chemical reactions in a nanostructured liquid. RUSSIAN JOURNAL OF PHYSICAL CHEMISTRY B 2017. [DOI: 10.1134/s1990793117050207] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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21
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Endo T, Matsuda Y, Fujii A. Infrared Spectroscopic Study of the Acidic CH Bonds in Hydrated Clusters of Cationic Pentane. J Phys Chem Lett 2017; 8:4716-4719. [PMID: 28903004 DOI: 10.1021/acs.jpclett.7b02282] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Infrared spectroscopy of the hydrated clusters of cationic pentane, which are generated through the vacuum ultraviolet photoionization in the gas phase, is carried out to probe the acidic properties of their CH bonds. The monohydrated pentane cation forms the proton-shared structure, in which the proton of CH in cationic pentane is shared between the pentyl radical and water molecule. In the di- and trihydrated clusters, the proton of CH is completely transferred to the water moiety so that the clusters are composed of the pentyl radical and protonated water cluster. These results indicate that two water molecules are enough to cause the proton transfer from CH of cationic pentane, and thus its acidity is highly enhanced with the ionization.
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Affiliation(s)
- Tomoya Endo
- Department of Chemistry, Graduate School of Science, Tohoku University , 6-3, Aramaki Aza-Aoba, Aoba-ku, Sendai 980-8578, Japan
| | - Yoshiyuki Matsuda
- Department of Chemistry, Graduate School of Science, Tohoku University , 6-3, Aramaki Aza-Aoba, Aoba-ku, Sendai 980-8578, Japan
| | - Asuka Fujii
- Department of Chemistry, Graduate School of Science, Tohoku University , 6-3, Aramaki Aza-Aoba, Aoba-ku, Sendai 980-8578, Japan
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22
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Wang P, Hu Y, Zhan H, Chen J, Jin S, Song W, Li Y. Vibrational spectroscopy of the mass-selected tetrahydrofurfuryl alcohol monomers and its dimers in gas phase using IR depletion and VUV single photon ionization. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2017; 185:63-68. [PMID: 28544895 DOI: 10.1016/j.saa.2017.04.089] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2017] [Revised: 04/22/2017] [Accepted: 04/30/2017] [Indexed: 06/07/2023]
Abstract
Tetrahydrofurfuryl alcohol (THFA, C5H10O2) is a close chemical analog of the sugar rings present in the phosphate-deoxyribose backbone structure of the nucleic acids. In present report, the infrared (IR) spectra of the size-selected THFA monomer and its dimer have been investigated in a pulsed supersonic jet using infrared-vacuum ultraviolet (VUV) ionization. Herein, the laser light at 118nm wavelength served as the source of "soft" ionization in a time-of-flight mass spectrometer. The IR features for the monomers located at 3622cm-1 can be assigned to the intramolecular hydrogen bonding stretch vibrations mainly referring to A and C conformers. Compared with the monomer, however, characteristic peaks for the dimer centered at 3415 and 3453cm-1, red shifted 207 and 169cm-1, respectively, were associated with the intermolecular hydrogen bonding stretch vibrations. Combined with the quantum-chemical calculations, the dimer in the gas phase preferred cyclic AC conformer stabled by forming two strong intermolecular hydrogen bonds, which shown the high hydrogen bond selectivity in the cluster. The conclusions drawn from the role played in the conformational flexibility by the hydroxyl and ether groups may be extended to other biomolecules.
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Affiliation(s)
- Pengchao Wang
- MOE Key Laboratory of Laser Life Science & Institute of Laser Life Science, College of Biophotonics, South China Normal University, Guangzhou 510631, P. R. China
| | - Yongjun Hu
- MOE Key Laboratory of Laser Life Science & Institute of Laser Life Science, College of Biophotonics, South China Normal University, Guangzhou 510631, P. R. China.
| | - Huaqi Zhan
- MOE Key Laboratory of Laser Life Science & Institute of Laser Life Science, College of Biophotonics, South China Normal University, Guangzhou 510631, P. R. China
| | - Jiaxin Chen
- MOE Key Laboratory of Laser Life Science & Institute of Laser Life Science, College of Biophotonics, South China Normal University, Guangzhou 510631, P. R. China
| | - Shan Jin
- MOE Key Laboratory of Laser Life Science & Institute of Laser Life Science, College of Biophotonics, South China Normal University, Guangzhou 510631, P. R. China
| | - Wentao Song
- MOE Key Laboratory of Laser Life Science & Institute of Laser Life Science, College of Biophotonics, South China Normal University, Guangzhou 510631, P. R. China
| | - Yujian Li
- MOE Key Laboratory of Laser Life Science & Institute of Laser Life Science, College of Biophotonics, South China Normal University, Guangzhou 510631, P. R. China
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23
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Zhang B, Kong X, Jiang S, Zhao Z, Yang D, Xie H, Hao C, Dai D, Yang X, Liu ZF, Jiang L. Infrared-Vacuum Ultraviolet Spectroscopic and Theoretical Study of Neutral Methylamine Dimer. J Phys Chem A 2017; 121:7176-7182. [DOI: 10.1021/acs.jpca.7b08096] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Bingbing Zhang
- State
Key Laboratory of Molecular Reaction Dynamics, Collaborative Innovation
Center of Chemistry for Energy and Materials (iChEM), Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian 116023, China
- State
Key Laboratory of Fine Chemicals, Dalian University of Technology, 2 Linggong Road, Dalian 116024, China
- University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, China
| | - Xiangtao Kong
- State
Key Laboratory of Molecular Reaction Dynamics, Collaborative Innovation
Center of Chemistry for Energy and Materials (iChEM), Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian 116023, China
- University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, China
| | - Shukang Jiang
- State
Key Laboratory of Molecular Reaction Dynamics, Collaborative Innovation
Center of Chemistry for Energy and Materials (iChEM), Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian 116023, China
- University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, China
- Shanghai
Advanced Research Institute, Chinese Academy of Sciences, 99 Haike
Road, Shanghai 201210, China
- School
of Physical Science and Technology, ShanghaiTech University, 319 Yueyang
Road, Shanghai 200031, China
| | - Zhi Zhao
- State
Key Laboratory of Molecular Reaction Dynamics, Collaborative Innovation
Center of Chemistry for Energy and Materials (iChEM), Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian 116023, China
| | - Dong Yang
- State
Key Laboratory of Molecular Reaction Dynamics, Collaborative Innovation
Center of Chemistry for Energy and Materials (iChEM), Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian 116023, China
- University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, China
| | - Hua Xie
- State
Key Laboratory of Molecular Reaction Dynamics, Collaborative Innovation
Center of Chemistry for Energy and Materials (iChEM), Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian 116023, China
| | - Ce Hao
- State
Key Laboratory of Fine Chemicals, Dalian University of Technology, 2 Linggong Road, Dalian 116024, China
| | - Dongxu Dai
- State
Key Laboratory of Molecular Reaction Dynamics, Collaborative Innovation
Center of Chemistry for Energy and Materials (iChEM), Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian 116023, China
| | - Xueming Yang
- State
Key Laboratory of Molecular Reaction Dynamics, Collaborative Innovation
Center of Chemistry for Energy and Materials (iChEM), Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian 116023, China
| | - Zhi-Feng Liu
- Department
of Chemistry and Centre for Scientific Modeling and Computation, Chinese University of Hong Kong, Shatin, Hong Kong, China
- Shenzhen
Research Institute, Chinese University of Hong Kong, No. 10, second
Yuexing Road, Shenzhen, China
| | - Ling Jiang
- State
Key Laboratory of Molecular Reaction Dynamics, Collaborative Innovation
Center of Chemistry for Energy and Materials (iChEM), Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian 116023, China
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24
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Ishikawa H, Kurusu I, Yagi R, Kato R, Kasahara Y. Quantitative Temperature Dependence of the Microscopic Hydration Structures Investigated by Ultraviolet Photodissociation Spectroscopy of Hydrated Phenol Cations. J Phys Chem Lett 2017; 8:2541-2546. [PMID: 28530816 DOI: 10.1021/acs.jpclett.7b01165] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
To discuss the temperature effect on microscopic hydration structures in clusters, relative populations of the isomers having different hydration structures at well-defined temperatures are quite important. In the present study, we measured ultraviolet photodissociation spectra of the temperature-controlled hydrated phenol cation [PhOH(H2O)5]+ trapped in the 22-pole ion trap. Two isomers having a distinct hydration motif with each other are identified in the spectra, and a clear change in the relative populations is observed in the temperature range from 30 to 150 K. This behavior is quantitatively interpreted by statistical mechanical estimation based on density functional theory calculations. A ring with tail-type hydration motif is dominant in cold conditions, whereas a chain-like motif is dominant in hot conditions. The present study provides very quantitative information about the temperature effect on the microscopic hydration structures.
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Affiliation(s)
- Haruki Ishikawa
- Department of Chemistry, School of Science, Kitasato University , Minami-ku, Sagamihara 252-0373, Japan
| | - Itaru Kurusu
- Department of Chemistry, School of Science, Kitasato University , Minami-ku, Sagamihara 252-0373, Japan
| | - Reona Yagi
- Department of Chemistry, School of Science, Kitasato University , Minami-ku, Sagamihara 252-0373, Japan
| | - Ryota Kato
- Department of Chemistry, School of Science, Kitasato University , Minami-ku, Sagamihara 252-0373, Japan
| | - Yasutoshi Kasahara
- Department of Chemistry, School of Science, Kitasato University , Minami-ku, Sagamihara 252-0373, Japan
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25
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Zhan H, Hu Y, Wang P, Chen J. Dominant conformer of tetrahydropyran-2-methanol and its clusters in the gas phase explored by the use of VUV photoionization and vibrational spectroscopy. J Chem Phys 2017; 146:134303. [DOI: 10.1063/1.4979298] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023] Open
Affiliation(s)
- Huaqi Zhan
- MOE Key laboratory of Laser Life Science and Institute of Laser Life Science, College of Biophotonics, South China Normal University, Guangzhou 510631, People’s Republic of China
| | - Yongjun Hu
- MOE Key laboratory of Laser Life Science and Institute of Laser Life Science, College of Biophotonics, South China Normal University, Guangzhou 510631, People’s Republic of China
| | - Pengchao Wang
- MOE Key laboratory of Laser Life Science and Institute of Laser Life Science, College of Biophotonics, South China Normal University, Guangzhou 510631, People’s Republic of China
| | - Jiaxin Chen
- MOE Key laboratory of Laser Life Science and Institute of Laser Life Science, College of Biophotonics, South China Normal University, Guangzhou 510631, People’s Republic of China
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26
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Zhan H, Hu Y, Wang P, Chen J. Molecular structures of gas-phase neutral morpholine and its monohydrated complexes: experimental and theoretical approaches. RSC Adv 2017. [DOI: 10.1039/c6ra26582k] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Morpholine (NH(CH2CH2)2O) is a typical six-membered aliphatic heterocyclic compound.
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Affiliation(s)
- Huaqi Zhan
- MOE Key Laboratory of Laser Life Science & Institute of Laser Life Science
- College of Biophotonics
- South China Normal University
- Guangzhou 510631
- P. R. China
| | - Yongjun Hu
- MOE Key Laboratory of Laser Life Science & Institute of Laser Life Science
- College of Biophotonics
- South China Normal University
- Guangzhou 510631
- P. R. China
| | - Pengchao Wang
- MOE Key Laboratory of Laser Life Science & Institute of Laser Life Science
- College of Biophotonics
- South China Normal University
- Guangzhou 510631
- P. R. China
| | - Jiaxin Chen
- MOE Key Laboratory of Laser Life Science & Institute of Laser Life Science
- College of Biophotonics
- South China Normal University
- Guangzhou 510631
- P. R. China
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27
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Wang P, Hu Y, Zhan H, Chen J. Gas-phase conformational preference of the smallest saccharide (glycolaldehyde) and its hydrated complexes with bridged hydrogen bonding. RSC Adv 2017. [DOI: 10.1039/c6ra26965f] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022] Open
Abstract
Glycoaldehyde (GA, HOCH2CHO) is the simplest sugar unit of the carbohydrates and the only sugar to have been detected in interstellar space to date.
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Affiliation(s)
- Pengchao Wang
- MOE Key Laboratory of Laser Life Science & Institute of Laser Life Science
- College of Biophotonics
- South China Normal University
- Guangzhou 510631
- P. R. China
| | - Yongjun Hu
- MOE Key Laboratory of Laser Life Science & Institute of Laser Life Science
- College of Biophotonics
- South China Normal University
- Guangzhou 510631
- P. R. China
| | - Huaqi Zhan
- MOE Key Laboratory of Laser Life Science & Institute of Laser Life Science
- College of Biophotonics
- South China Normal University
- Guangzhou 510631
- P. R. China
| | - Jiaxin Chen
- MOE Key Laboratory of Laser Life Science & Institute of Laser Life Science
- College of Biophotonics
- South China Normal University
- Guangzhou 510631
- P. R. China
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28
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Pan PR, Lu EP, Kuo JL, Tsai MK. The Spectroscopic Features of Ionized Water Medium: Theoretical Characterization and Implication Using (H 2O) n+, n=3-4, Cluster Model. J CHIN CHEM SOC-TAIP 2016. [DOI: 10.1002/jccs.201600030] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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29
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Marsh BM, Voss JM, Garand E. A dual cryogenic ion trap spectrometer for the formation and characterization of solvated ionic clusters. J Chem Phys 2015; 143:204201. [DOI: 10.1063/1.4936360] [Citation(s) in RCA: 52] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Brett M. Marsh
- Department of Chemistry, University of Wisconsin-Madison, 1101 University Avenue, Madison, Wisconsin 53706, USA
| | - Jonathan M. Voss
- Department of Chemistry, University of Wisconsin-Madison, 1101 University Avenue, Madison, Wisconsin 53706, USA
| | - Etienne Garand
- Department of Chemistry, University of Wisconsin-Madison, 1101 University Avenue, Madison, Wisconsin 53706, USA
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30
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Matsuda Y, Harigaya H, Xie M, Takahashi K, Fujii A. Infrared spectroscopic investigations of cationic ethanol, propanol, and butanol. Chem Phys Lett 2015. [DOI: 10.1016/j.cplett.2015.10.044] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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31
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Ohashi K, Sasaki J, Yamamoto G, Judai K, Nishi N, Sekiya H. Temperature effects on prevalent structures of hydrated Fe+ complexes: Infrared spectroscopy and DFT calculations of Fe+(H2O)n (n = 3–8). J Chem Phys 2014; 141:214307. [DOI: 10.1063/1.4902408] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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32
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Theoretical investigation of hydrogen bonding interaction in H3O+(H2O)9 complex. J Mol Model 2014; 20:2480. [DOI: 10.1007/s00894-014-2480-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2014] [Accepted: 09/28/2014] [Indexed: 11/24/2022]
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33
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Jiang L, Sun ST, Heine N, Liu JW, Yacovitch TI, Wende T, Liu ZF, Neumark DM, Asmis KR. Large amplitude motion in cold monohydrated dihydrogen phosphate anions H2PO4−(H2O): infrared photodissociation spectroscopy combined with ab initio molecular dynamics simulations. Phys Chem Chem Phys 2014; 16:1314-8. [DOI: 10.1039/c3cp54250e] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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34
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Rijs AM, Oomens J. IR Spectroscopic Techniques to Study Isolated Biomolecules. Top Curr Chem (Cham) 2014; 364:1-42. [DOI: 10.1007/128_2014_621] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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35
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Matsuda Y, Nakayama Y, Mikami N, Fujii A. Isomer-selective infrared spectroscopy of the cationic trimethylamine dimer to reveal its charge sharing and enhanced acidity of the methyl groups. Phys Chem Chem Phys 2014; 16:9619-24. [DOI: 10.1039/c4cp00659c] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
The isomer-selective infrared spectroscopy revealed the charge-shared (hemibond) and the C⋯HN hydrogen-bond structures of the trimethylamine dimer cation.
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Affiliation(s)
- Yoshiyuki Matsuda
- Department of Chemistry
- Graduate School of Science
- Tohoku University
- Sendai, Japan
- Center for the Advancement of Higher Education
| | - Yuichiro Nakayama
- Department of Chemistry
- Graduate School of Science
- Tohoku University
- Sendai, Japan
| | - Naohiko Mikami
- Department of Chemistry
- Graduate School of Science
- Tohoku University
- Sendai, Japan
| | - Asuka Fujii
- Department of Chemistry
- Graduate School of Science
- Tohoku University
- Sendai, Japan
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36
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Dryza V, Bieske E. Non-covalent interactions between metal cations and molecular hydrogen: spectroscopic studies of M+–H2complexes. INT REV PHYS CHEM 2013. [DOI: 10.1080/0144235x.2013.810489] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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37
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Walker M, Harvey AJA, Sen A, Dessent CEH. Performance of M06, M06-2X, and M06-HF density functionals for conformationally flexible anionic clusters: M06 functionals perform better than B3LYP for a model system with dispersion and ionic hydrogen-bonding interactions. J Phys Chem A 2013; 117:12590-600. [PMID: 24147965 DOI: 10.1021/jp408166m] [Citation(s) in RCA: 448] [Impact Index Per Article: 40.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We present a comparative assessment of the performance of the M06 suite of density functionals (M06, M06-2X, and M06-HF) against an MP2 benchmark for calculating the relative energies and geometric structures of the Cl(-)·arginine and Br(-)·arginine halide ion-amino acid clusters. Additional results are presented for the popular B3LYP density functional. The Cl(-)·arginine and Br(-)·arginine complexes are important prototypes for the phenomenon of anion-induced zwitterion formation. Results are presented for the canonical (noncharge separated) and zwitterionic (charge separated) tautomers of the clusters, as well as the numerous conformational isomers of the clusters. We find that all of the M06 functions perform well in terms of predicting the general trends in the conformer relative energies and identifying the global minimum conformer. This is in contrast to the B3LYP functional, which performed significantly less well for the canonical tautomers of the clusters where dispersion interactions contribute more significantly to the conformer energetics. We find that the M06 functional gave the lowest mean unsigned error for the relative energies of the canonical conformers (2.10 and 2.36 kJ/mol for Br(-)·arginine and Cl(-)·arginine), while M06-2X gave the lowest mean unsigned error for the zwitterionic conformers (0.85 and 1.23 kJ/mol for Br(-)·arginine and Cl(-)·arginine), thus providing insight into the types of physical systems where each of these functionals should perform best.
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Affiliation(s)
- Martin Walker
- Department of Chemistry, University of York , Heslington, York YO10 5DD, U.K
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38
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Hu Y, Guan J, Bernstein ER. Mass-selected IR-VUV (118 nm) spectroscopic studies of radicals, aliphatic molecules, and their clusters. MASS SPECTROMETRY REVIEWS 2013; 32:484-501. [PMID: 24122973 DOI: 10.1002/mas.21387] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2013] [Revised: 04/25/2013] [Accepted: 04/25/2013] [Indexed: 06/02/2023]
Abstract
Mass-selected IR plus UV/VUV spectroscopy and mass spectrometry have been coupled into a powerful technique to investigate chemical, physical, structural, and electronic properties of radicals, molecules, and clusters. Advantages of the use of vacuum ultraviolet (VUV) radiation to create ions for mass spectrometry are its application to nearly all compounds with ionization potentials below the energy of a single VUV photon, its circumventing the requirement of UV chromophore group, its inability to ionize background gases, and its greatly reduced fragmenting capabilities. In this review, mass-selected IR plus VUV (118 nm) spectroscopy is introduced first in a general manner. Selected application examples of this spectroscopy are presented, which include the detections and structural analysis of radicals, molecules, and molecular clusters in a supersonic jet.
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Affiliation(s)
- Yongjun Hu
- MOE Key Laboratory of Laser Life Science & Institute of Laser Life Science, College of Biophotonics, South China Normal University, Guangzhou, 510631, China
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39
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Llanio-Trujillo J, Marques J, Pereira F. New insights on lithium-cation microsolvation by solvents forming hydrogen-bonds: Water versus methanol. COMPUT THEOR CHEM 2013. [DOI: 10.1016/j.comptc.2013.06.043] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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40
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Sigalov MV, Kalish N, Carmeli B, Pines D, Pines E. Probing Small Protonated Water Clusters in Acetonitrile Solutions by 1H NMR. ACTA ACUST UNITED AC 2013. [DOI: 10.1524/zpch.2013.0399] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
Abstract
In a previous publication by Kalish et al. (J. Phys. Chem. A 115 (2011) 4063) the existence of well defined small protonated water clusters in acetonitrile has been established by IR spectroscopy. Here we report on a 1H NMR study of triflic acid, CF3SO3H, in acetonitrile-water solutions. Using NMR we are able to corroborate the general solvation scheme we have proposed for the hydrated proton in acetonitrile as a function of the molar ratio between the strong mineral acid and water, n = [H2O]/[acid]. According to this scheme, backed now by both IR absorption spectroscopy and NMR measurements, the very strong triflic acid completely dissociates in acetonitrile/water solutions to yield the aqueous proton and the triflate anion when n > 1. Furthermore, increasing n results in the proton solvated in increasingly larger water clusters formed within the acetonitrile solution.
Clearly distinguishable by NMR are the smallest protonated water clusters, the protonated water monomer, H3
+O, and the protonated water dimer, H5
+O2, which dominate the solution for n = 1,2,3. For larger n the NMR study indicates the gradual increase of the average protonated water cluster size as a function of n while the proton inner solvation core more closely retaining the characteristics of a deformed protonated water dimer, (H2O-H+⋯OH2)
s
than that of the protonated water monomer (H3
+O)
s
.
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Affiliation(s)
- Mark V. Sigalov
- Ben-Gurion University of the Negev, Department of Chemistry, Beer-Sheva 84125, Israel
| | - Noah Kalish
- Ben-Gurion University of the Negev, Department of Chemistry, Beer-Sheva 84125, Israel
| | - Benny Carmeli
- Ben-Gurion University of the Negev, Department of Chemistry, Beer-Sheva 84125, Israel
| | - Dina Pines
- Ben-Gurion University of the Negev, Department of Chemistry, Beer-Sheva 84125, Israel
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41
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Wang Q, Suzuki K, Nagashima U, Tachikawa M, Yan S. Path integral molecular dynamic study of nuclear quantum effect on small chloride water clusters of Cl−(H2O)1–4. Chem Phys 2013. [DOI: 10.1016/j.chemphys.2013.02.025] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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42
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Fujii A, Mizuse K. Infrared spectroscopic studies on hydrogen-bonded water networks in gas phase clusters. INT REV PHYS CHEM 2013. [DOI: 10.1080/0144235x.2012.760836] [Citation(s) in RCA: 61] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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43
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Fifen JJ, Nsangou M, Dhaouadi Z, Motapon O, Jaidane NE. Structures of protonated methanol clusters and temperature effects. J Chem Phys 2013; 138:184301. [DOI: 10.1063/1.4802480] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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44
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Xu HG, Li XN, Kong XY, He SG, Zheng WJ. Interaction of TiO+ with water: infrared photodissociation spectroscopy and density functional calculations. Phys Chem Chem Phys 2013; 15:17126-33. [DOI: 10.1039/c3cp52823e] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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45
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Adamson BD, Coughlan NJA, Continetti RE, Bieske EJ. Changing the shape of molecular ions: photoisomerization action spectroscopy in the gas phase. Phys Chem Chem Phys 2013; 15:9540-8. [DOI: 10.1039/c3cp51393a] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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46
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Guan J, Hu Y, Xie M, Bernstein ER. Weak carbonyl-methyl intermolecular interactions in acetone clusters explored by IR plus VUV spectroscopy. Chem Phys 2012. [DOI: 10.1016/j.chemphys.2012.06.017] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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47
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Ohshimo K, Inokuchi Y, Ebata T, Ohno K. Anionic Polymerization Mechanism of Acrylonitrile Trimer Anions: Key Branching Point between Cyclization and Chain Propagation. J Phys Chem A 2012; 116:7937-42. [DOI: 10.1021/jp305291r] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Keijiro Ohshimo
- Chemical Dynamics Laboratory, RIKEN Advanced Science Institute , Wako, Saitama 351-0198, Japan
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48
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Shishido R, Kuo JL, Fujii A. Structures and dissociation channels of protonated mixed clusters around a small magic number: infrared spectroscopy of ((CH3)3N)n-H(+)-H2O (n = 1-3). J Phys Chem A 2012; 116:6740-9. [PMID: 22630614 DOI: 10.1021/jp3026144] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The magic number behavior of ((CH(3))(3)N)(n)-H(+)-H(2)O clusters at n = 3 is investigated by applying infrared spectroscopy to the clusters of n = 1-3. Structures of these clusters are determined in conjunction with density functional theory calculations. Dissociation channels upon infrared excitation are also measured, and their correlation with the cluster structures is examined. It is demonstrated that the magic number cluster has a closed-shell structure, in which the water moiety is surrounded by three (CH(3))(3)N molecules. The ion core (protonated site) of the clusters is found to be (CH(3))(3)NH(+) for n = 1-3, but coexistence of an isomer of the H(3)O(+) ion core cannot be ruled out for n = 3. Large rearrangement of the cluster structures of n = 2 and 3 before dissociation, which has been suggested in the mass spectrometric studies, is confirmed on the basis of the structure determination by infrared spectroscopy.
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Affiliation(s)
- Ryunosuke Shishido
- Department of Chemistry, Graduate School of Science, Tohoku University, Sendai 980-8578, Japan
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49
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Crestoni ME, Fornarini S. Messung der Jahn-Teller-Verzerrung von Kohlenwasserstoff-Kationen durch Infrarot-Photodissoziationsspektroskopie. Angew Chem Int Ed Engl 2012. [DOI: 10.1002/ange.201201650] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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50
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Crestoni ME, Fornarini S. Jahn-Teller Distortion of Hydrocarbon Cations Probed by Infrared Photodissociation Spectroscopy. Angew Chem Int Ed Engl 2012; 51:7373-5. [DOI: 10.1002/anie.201201650] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2012] [Indexed: 11/12/2022]
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