1
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Gulotta A, Bucciarelli S, Roosen-Runge F, Holderer O, Schurtenberger P, Stradner A. Testing mixing rules for structural and dynamical quantities in multi-component crowded protein solutions. APL Bioeng 2024; 8:026116. [PMID: 38827499 PMCID: PMC11143939 DOI: 10.1063/5.0204201] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2024] [Accepted: 05/14/2024] [Indexed: 06/04/2024] Open
Abstract
Crowding effects significantly influence the phase behavior and the structural and dynamic properties of the concentrated protein mixtures present in the cytoplasm of cells or in the blood serum. This poses enormous difficulties for our theoretical understanding and our ability to predict the behavior of these systems. While the use of course grained colloid-inspired models allows us to reproduce the key physical solution properties of concentrated monodisperse solutions of individual proteins, we lack corresponding theories for complex polydisperse mixtures. Here, we test the applicability of simple mixing rules in order to predict solution properties of protein mixtures. We use binary mixtures of the well-characterized bovine eye lens proteins α and γB crystallin as model systems. Combining microrheology with static and dynamic scattering techniques and observations of the phase diagram for liquid-liquid phase separation, we show that reasonably accurate descriptions are possible for macroscopic and mesoscopic signatures, while information on the length scale of the individual protein size requires more information on cross-component interaction.
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Affiliation(s)
- Alessandro Gulotta
- Division for Physical Chemistry, Lund University, Naturvetarvägen 14, 22100 Lund, Sweden
| | - Saskia Bucciarelli
- Division for Physical Chemistry, Lund University, Naturvetarvägen 14, 22100 Lund, Sweden
| | | | - Olaf Holderer
- Jülich Centre for Neutron Science (JCNS) at Heinz Maier-Leibnitz Zentrum (MLZ), Forschungszentrum Jülich GmbH, Garching, Germany
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2
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Cheishvili K, Besseling R, Hermes M, Kalkman J. Wavenumber-dependent dynamic light scattering optical coherence tomography measurements of collective and self-diffusion. OPTICS EXPRESS 2024; 32:19963-19983. [PMID: 38859117 DOI: 10.1364/oe.521702] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2024] [Accepted: 04/11/2024] [Indexed: 06/12/2024]
Abstract
We demonstrate wavenumber-dependent DLS-OCT measurements of collective and self-diffusion coefficients in concentrated silica suspensions across a broad q-range, utilizing a custom home-built OCT system. Depending on the sample polydispersity, either the collective or self-diffusion is measured. The measured collective-diffusion coefficient shows excellent agreement with hard-sphere theory and serves as an effective tool for accurately determining particle sizes. We employ the decoupling approximation for simultaneously measuring collective and self-diffusion coefficients, even in sufficiently monodisperse suspensions, using a high-speed Thorlabs OCT system. This enables particle size and volume fraction determination without the necessity of wavenumber-dependent measurements. We derive a relationship between the particle number-based polydispersity index and the ratio of self and collective mode amplitudes in the autocorrelation function and utilize it to measure the particle number-based polydispersity index. Notably, the polydispersity determined in this manner demonstrates improved sensitivity to smaller particle sizes compared to the standard intensity-based DLS cumulant analysis performed on dilute samples.
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3
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Gulotta A, Polimeni M, Lenton S, Starr CG, Stradner A, Zaccarelli E, Schurtenberger P. Combining Scattering Experiments and Colloid Theory to Characterize Charge Effects in Concentrated Antibody Solutions. Mol Pharm 2024; 21:2250-2271. [PMID: 38661388 PMCID: PMC11080060 DOI: 10.1021/acs.molpharmaceut.3c01023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2023] [Revised: 04/08/2024] [Accepted: 04/08/2024] [Indexed: 04/26/2024]
Abstract
Charges and their contribution to protein-protein interactions are essential for the key structural and dynamic properties of monoclonal antibody (mAb) solutions. In fact, they influence the apparent molecular weight, the static structure factor, the collective diffusion coefficient, or the relative viscosity, and their concentration dependence. Further, charges play an important role in the colloidal stability of mAbs. There exist standard experimental tools to characterize mAb net charges, such as the measurement of the electrophoretic mobility, the second virial coefficient, or the diffusion interaction parameter. However, the resulting values are difficult to directly relate to the actual overall net charge of the antibody and to theoretical predictions based on its known molecular structure. Here, we report the results of a systematic investigation of the solution properties of a charged IgG1 mAb as a function of concentration and ionic strength using a combination of electrophoretic measurements, static and dynamic light scattering, small-angle X-ray scattering, and tracer particle-based microrheology. We analyze and interpret the experimental results using established colloid theory and coarse-grained computer simulations. We discuss the potential and limits of colloidal models for the description of the interaction effects of charged mAbs, in particular pointing out the importance of incorporating shape and charge anisotropy when attempting to predict structural and dynamic solution properties at high concentrations.
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Affiliation(s)
- Alessandro Gulotta
- Physical
Chemistry, Department of Chemistry, Lund
University, Lund SE-221 00, Sweden
| | - Marco Polimeni
- Physical
Chemistry, Department of Chemistry, Lund
University, Lund SE-221 00, Sweden
| | - Samuel Lenton
- Physical
Chemistry, Department of Chemistry, Lund
University, Lund SE-221 00, Sweden
| | - Charles G. Starr
- Biologics
Drug Product Development and Manufacturing, CMC Development, Sanofi, Framingham, Massachusetts 01701, United States
| | - Anna Stradner
- Physical
Chemistry, Department of Chemistry, Lund
University, Lund SE-221 00, Sweden
- LINXS
Institute of Advanced Neutron and X-ray Science, Scheelevägen 19, Lund SE-223 70, Sweden
| | - Emanuela Zaccarelli
- Institute
for Complex Systems, National Research Council (ISC−CNR), Piazzale Aldo Moro 5, Rome 00185, Italy
- Department
of Physics, Sapienza University of Rome, Piazzale Aldo Moro 2, Rome 00185, Italy
| | - Peter Schurtenberger
- Physical
Chemistry, Department of Chemistry, Lund
University, Lund SE-221 00, Sweden
- LINXS
Institute of Advanced Neutron and X-ray Science, Scheelevägen 19, Lund SE-223 70, Sweden
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4
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Dennis KA, Li Q, Sbalbi N, Brown SC, Furst EM. Diffusing Wave Spectroscopy Measurements of Colloidal Suspension Dynamics. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2024; 40:6129-6137. [PMID: 38470355 DOI: 10.1021/acs.langmuir.3c03118] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/13/2024]
Abstract
Diffusing wave spectroscopy (DWS) is used to measure the dynamics of charged silica particles between the volume fractions 0.065 ≤ ϕ ≤ 0.352 (weight percentages from 12.7 to 55.8 wt %). The short-time diffusivity averaged over the scattering vectors sampled by DWS D ¯ (ϕ) decreases with an increasing concentration. An effective hard-sphere model that accounts for hydrodynamic interactions and a double-layer repulsion fits the values up to an effective volume fraction ϕ e f f = ϕ b ^ 3 ≈ 0.6 , where b ^ is the excluded shell radius normalized by the particle radius b ^ = b/a = 1.3. While DWS measurements of diffusivity are sensitive to repulsive interactions, we show that they are relatively insensitive to attraction, such as those due to secondary minima in the interaction potential or weak depletion interaction.
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Affiliation(s)
- Kimberly A Dennis
- Department of Chemical and Biomolecular Engineering, Allan P. Colburn Laboratory, University of Delaware, 150 Academy Street, Newark, Delaware 19716, United States
| | - Qi Li
- Department of Chemical and Biomolecular Engineering, Allan P. Colburn Laboratory, University of Delaware, 150 Academy Street, Newark, Delaware 19716, United States
| | - Nicholas Sbalbi
- Department of Chemical and Biomolecular Engineering, Allan P. Colburn Laboratory, University of Delaware, 150 Academy Street, Newark, Delaware 19716, United States
| | - Scott C Brown
- The Chemours Company, Chemours Discovery Hub, N3-127B, 201 Discovery Blvd., Newark, Delaware 19713, United States
| | - Eric M Furst
- Department of Chemical and Biomolecular Engineering, Allan P. Colburn Laboratory, University of Delaware, 150 Academy Street, Newark, Delaware 19716, United States
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5
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Diaz Maier J, Wagner J. Structure and short-time diffusion of concentrated suspensions consisting of silicone-stabilised PMMA particles: a quantitative analysis taking polydispersity effects into account. SOFT MATTER 2024; 20:1309-1319. [PMID: 38240651 DOI: 10.1039/d3sm01510f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/08/2024]
Abstract
We characterise structure and dynamics of concentrated suspensions of silicone-stabilised PMMA particles immersed in index-matching decalin-tetralin mixtures by means of static and quasielastic light scattering experiments. These particles can reproducibly be prepared via a comparatively easy route and are thus promising model systems with hard-sphere interaction. We demonstrate the hard-sphere behaviour of dense suspensions of these systems rigorously taking polydispersity effects into account. Structure factors S(Q) can in the entire range of volume fractions with liquid-like structure quantitatively be modelled using a multi-component Percus-Yevick ansatz regarding the particle size distribution and the form factor assuming a core-shell model with a scattering length density gradient in the PMMA core. Herewith, hydrodynamic functions H(Q) are in the whole accessible Q-range beyond the second maximum of H(Q) quantitatively modelled using a rescaled δγ-approach for all investigated volume fractions. With these data, previously provided characterisation of dilute systems is extended: the excellent agreement of structural and dynamic properties with theoretical predictions for hard spheres demonstrates the suitability of these particles as a model system for hard spheres.
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Affiliation(s)
- Joel Diaz Maier
- Institut für Chemie, Universität Rostock, 18051 Rostock, Germany.
| | - Joachim Wagner
- Institut für Chemie, Universität Rostock, 18051 Rostock, Germany.
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6
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Brito ME, Nägele G, Denton AR. Effective interactions, structure, and pressure in charge-stabilized colloidal suspensions: Critical assessment of charge renormalization methods. J Chem Phys 2023; 159:204904. [PMID: 38014786 DOI: 10.1063/5.0180914] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2023] [Accepted: 10/30/2023] [Indexed: 11/29/2023] Open
Abstract
Charge-stabilized colloidal suspensions display a rich variety of microstructural and thermodynamic properties, which are determined by electro-steric interactions between all ionic species. The large size asymmetry between molecular-scale microions and colloidal macroions allows the microion degrees of freedom to be integrated out, leading to an effective one-component model of microion-dressed colloidal quasi-particles. For highly charged colloids with strong macroion-microion correlations, nonlinear effects can be incorporated into effective interactions by means of charge renormalization methods. Here, we compare and partially extend several practical mean-field methods of calculating renormalized colloidal interaction parameters, including effective charges and screening constants, as functions of concentration and ionic strength. Within the one-component description, we compute structural and thermodynamic properties from the effective interactions and assess the accuracy of the different methods by comparing predictions with elaborate primitive-model simulations [P. Linse, J. Chem. Phys. 113, 4359 (2000)]. We also compare various prescriptions for the osmotic pressure of suspensions in Donnan equilibrium with a salt ion reservoir and analyze instances where the macroion effective charge becomes larger than the bare one. The methods assessed include single-center cell, jellium, and multi-center mean-field theories. The strengths and weaknesses of the various methods are critically assessed, with the aim of guiding optimal and accurate implementations.
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Affiliation(s)
- Mariano E Brito
- Institute of Biological Information Processing, IBI-4, Forschungszentrum Jülich GmbH, 52425 Jülich, Germany
| | - Gerhard Nägele
- Institute of Biological Information Processing, IBI-4, Forschungszentrum Jülich GmbH, 52425 Jülich, Germany
| | - Alan R Denton
- Department of Physics, North Dakota State University, Fargo, North Dakota 58108-6050, USA
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7
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Mosca I, Pounot K, Beck C, Colin L, Matsarskaia O, Grapentin C, Seydel T, Schreiber F. Biophysical Determinants for the Viscosity of Concentrated Monoclonal Antibody Solutions. Mol Pharm 2023; 20:4698-4713. [PMID: 37549226 DOI: 10.1021/acs.molpharmaceut.3c00440] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/09/2023]
Abstract
Monoclonal antibodies (mAbs) are particularly relevant for therapeutics due to their high specificity and versatility, and mAb-based drugs are hence used to treat numerous diseases. The increased patient compliance of self-administration motivates the formulation of products for subcutaneous (SC) administration. The associated challenge is to formulate highly concentrated antibody solutions to achieve a significant therapeutic effect, while limiting their viscosity and preserving their physicochemical stability. Protein-protein interactions (PPIs) are in fact the root cause of several potential problems concerning the stability, manufacturability, and delivery of a drug product. The understanding of macroscopic viscosity requires an in-depth knowledge on protein diffusion, PPIs, and self-association/aggregation. Here, we study the self-diffusion of different mAbs of the IgG1 subtype in aqueous solution as a function of the concentration and temperature by quasi-elastic neutron scattering (QENS). QENS allows us to probe the short-time self-diffusion of the molecules and therefore to determine the hydrodynamic mAb cluster size and to gain information on the internal mAb dynamics. Small-angle neutron scattering (SANS) is jointly employed to probe structural details and to understand the nature and intensity of PPIs. Complementary information is provided by molecular dynamics (MD) simulations and viscometry, thus obtaining a comprehensive picture of mAb diffusion.
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Affiliation(s)
- Ilaria Mosca
- Institut für Angewandte Physik, Universität Tübingen, Auf der Morgenstelle 10, Tübingen 72076, Germany
- Institut Max von Laue - Paul Langevin, 71 Av. des Martyrs, Grenoble 38042, France
| | - Kévin Pounot
- Institut für Angewandte Physik, Universität Tübingen, Auf der Morgenstelle 10, Tübingen 72076, Germany
- Institut Max von Laue - Paul Langevin, 71 Av. des Martyrs, Grenoble 38042, France
| | - Christian Beck
- Institut für Angewandte Physik, Universität Tübingen, Auf der Morgenstelle 10, Tübingen 72076, Germany
- Institut Max von Laue - Paul Langevin, 71 Av. des Martyrs, Grenoble 38042, France
| | - Louise Colin
- Institut für Angewandte Physik, Universität Tübingen, Auf der Morgenstelle 10, Tübingen 72076, Germany
- Institut Max von Laue - Paul Langevin, 71 Av. des Martyrs, Grenoble 38042, France
| | - Olga Matsarskaia
- Institut Max von Laue - Paul Langevin, 71 Av. des Martyrs, Grenoble 38042, France
| | | | - Tilo Seydel
- Institut Max von Laue - Paul Langevin, 71 Av. des Martyrs, Grenoble 38042, France
| | - Frank Schreiber
- Institut für Angewandte Physik, Universität Tübingen, Auf der Morgenstelle 10, Tübingen 72076, Germany
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8
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Kale S, Lederer A, Oettel M, Schöpe HJ. Approaching the hard sphere limit in colloids suitable for confocal microscopy - the end of a decade lasting quest. SOFT MATTER 2023; 19:2146-2157. [PMID: 36880153 DOI: 10.1039/d2sm01427k] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
PMMA-PHSA particles serve as the hard sphere model system since the 1980s. We investigate the fluid structure of fluorescent ones in three different solvents by laser scanning confocal microscopy: a decalin-tetrachloroethylene (TCE)-mixture and a decalin-cyclohexylbromide (CHB)-mixture with and without tetrabutylammoniumbromide (TBAB). The experimental 3D radial distribution functions are modeled by analytical theory and computer simulations taking polydispersity and the experimental position uncertainty into account. The quantitative comparison between experiment and simulation/theory establishes hard sphere like behavior for particles in decalin-TCE for a wide range of particle packing fractions. To the best of our knowledge, we present the first experimental dataset of a fluid structure that agrees convincingly with Percus-Yevick over a wide concentration range. Furthermore, charged sphere behavior is confirmed both for the decalin-CHB and the decalin-CHB-TBAB solvents, and it is demonstrated that a finite particle concentration reduces screening in the decalin-CHB-TBAB system compared to the bulk solvent.
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Affiliation(s)
- Sahana Kale
- Institute for Applied Physics, Eberhard Karls University Tubingen, Auf der Morgenstelle 10, 72076 Tubingen, Germany.
| | - Achim Lederer
- Retsch Technology GmbH, Retsch-Allee 1-5, 42781 Haan, Germany
| | - Martin Oettel
- Institute for Applied Physics, Eberhard Karls University Tubingen, Auf der Morgenstelle 10, 72076 Tubingen, Germany.
| | - Hans Joachim Schöpe
- Institute for Applied Physics, Eberhard Karls University Tubingen, Auf der Morgenstelle 10, 72076 Tubingen, Germany.
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9
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Nanoscale Bending Dynamics in Mixed-Chain Lipid Membranes. Symmetry (Basel) 2023. [DOI: 10.3390/sym15010191] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023] Open
Abstract
Lipids that have two tails of different lengths are found throughout biomembranes in nature, yet the effects of this asymmetry on the membrane properties are not well understood, especially when it comes to the membrane dynamics. Here we study the nanoscale bending fluctuations in model mixed-chain 14:0–18:0 PC (MSPC) and 18:0–14:0 PC (SMPC) lipid bilayers using neutron spin echo (NSE) spectroscopy. We find that despite the partial interdigitation that is known to persist in the fluid phase of these membranes, the collective fluctuations are enhanced on timescales of tens of nanoseconds, and the chain-asymmetric lipid bilayers are softer than an analogous chain-symmetric lipid bilayer with the same average number of carbons in the acyl tails, di-16:0 PC (DPPC). Quantitative comparison of the NSE results suggests that the enhanced bending fluctuations at the nanosecond timescales are consistent with experimental and computational studies that showed the compressibility moduli of chain-asymmetric lipid membranes are 20% to 40% lower than chain-symmetric lipid membranes. These studies add to growing evidence that the partial interdigitation in mixed-chain lipid membranes is highly dynamic in the fluid phase and impacts membrane dynamic processes from the molecular to mesoscopic length scales without significantly changing the bilayer thickness or area per lipid.
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10
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Alexander NP, Phillips RJ, Dungan SR. Light scattering from mixtures of interacting, nonionic micelles with hydrophobic solutes. SOFT MATTER 2022; 18:9086-9107. [PMID: 36426650 DOI: 10.1039/d2sm01007k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Model equations for the Rayleigh ratio and the electric field autocorrelation function are derived using thermodynamic fluctuation theory applied to crowded solute-containing micellar solutions and microemulsions with negligible molecular species and polydispersity. This theory invokes non-equilibrium thermodynamics and enforces local equilibrium between molecular solute, surfactant, and the various micellar species, in order to elucidate the influence of self-assembly on light scattering correlation functions. We find that self-assembly driven variations in the average micelle radius and aggregation number along gradients in concentration, which were previously shown to drive strong multicomponent diffusion effects expressed via the ternary diffusivity matrix [D], do not affect the scattering functions in the limit of zero local polydispersity. Hence, theoretical predictions for the Rayleigh ratio and the field autocorrelation function for ternary mixtures of solute-containing, locally monodisperse micellar solutions are identical to those developed for binary mixtures of monodisperse, colloidal hard spheres. However, self-assembly driven multicomponent diffusion phenomena are predicted to influence the thermodynamic driving forces for diffusion in these mixtures. In support of our theoretical results, measurements for the Rayleigh ratio and the field autocorrelation function for ternary aqueous solutions of decaethylene glycol monododecyl ether (C12E10) with either decane or limonene solute were performed for several molar ratios and volume fractions up to ϕ ≈ 0.25, and for binary mixtures of C12E10/water up to ϕ ≈ 0.5. Excellent agreement between our light scattering theory and experimental data is achieved for low to moderate volume fractions (ϕ < 0.3), and at higher concentrations when our theoretical results are corrected to account for micelle dehydration.
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Affiliation(s)
- Nathan P Alexander
- Department of Chemical and Biomolecular Engineering, University of Delaware, Newark, DE 91716, USA.
| | - Ronald J Phillips
- Department of Chemical Engineering, University of California at Davis, Davis, CA 95616, USA
| | - Stephanie R Dungan
- Department of Chemical Engineering, University of California at Davis, Davis, CA 95616, USA
- Department of Food Science and Technology, University of California at Davis, Davis, CA 95616, USA
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11
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Beck C, Grimaldo M, Lopez H, Da Vela S, Sohmen B, Zhang F, Oettel M, Barrat JL, Roosen-Runge F, Schreiber F, Seydel T. Short-Time Transport Properties of Bidisperse Suspensions of Immunoglobulins and Serum Albumins Consistent with a Colloid Physics Picture. J Phys Chem B 2022; 126:7400-7408. [PMID: 36112146 PMCID: PMC9527755 DOI: 10.1021/acs.jpcb.2c02380] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
![]()
The crowded environment of biological systems such as
the interior
of living cells is occupied by macromolecules with a broad size distribution.
This situation of polydispersity might influence the dependence of
the diffusive dynamics of a given tracer macromolecule in a monodisperse
solution on its hydrodynamic size and on the volume fraction. The
resulting size dependence of diffusive transport crucially influences
the function of a living cell. Here, we investigate a simplified model
system consisting of two constituents in aqueous solution, namely,
of the proteins bovine serum albumin (BSA) and bovine polyclonal gamma-globulin
(Ig), systematically depending on the total volume fraction and ratio
of these constituents. From high-resolution quasi-elastic neutron
spectroscopy, the separate apparent short-time diffusion coefficients
for BSA and Ig in the mixture are extracted, which show substantial
deviations from the diffusion coefficients measured in monodisperse
solutions at the same total volume fraction. These deviations can
be modeled quantitatively using results from the short-time rotational
and translational diffusion in a two-component hard sphere system
with two distinct, effective hydrodynamic radii. Thus, we find that
a simple colloid picture well describes short-time diffusion in binary
mixtures as a function of the mixing ratio and the total volume fraction.
Notably, the self-diffusion of the smaller protein BSA in the mixture
is faster than the diffusion in a pure BSA solution, whereas the self-diffusion
of Ig in the mixture is slower than in the pure Ig solution.
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Affiliation(s)
- Christian Beck
- Institut für Angewandte Physik, Universität Tübingen, Auf der Morgenstelle 10, 72076 Tübingen, Germany
- Institut Max von Laue─Paul Langevin (ILL), CS 20156, F-38042 Grenoble Cedex 9, France
| | - Marco Grimaldo
- Institut Max von Laue─Paul Langevin (ILL), CS 20156, F-38042 Grenoble Cedex 9, France
| | - Hender Lopez
- School of Physics and Optometric & Clinical Sciences, Technological University Dublin, D07 XT95 Grangegorman, Ireland
| | - Stefano Da Vela
- Institut für Angewandte Physik, Universität Tübingen, Auf der Morgenstelle 10, 72076 Tübingen, Germany
| | - Benedikt Sohmen
- Institut für Angewandte Physik, Universität Tübingen, 72076 Tübingen, Germany
| | - Fajun Zhang
- Institut für Angewandte Physik, Universität Tübingen, Auf der Morgenstelle 10, 72076 Tübingen, Germany
| | - Martin Oettel
- Institut für Angewandte Physik, Universität Tübingen, Auf der Morgenstelle 10, 72076 Tübingen, Germany
| | | | - Felix Roosen-Runge
- Department of Biomedical Science and Biofilms-Research Center for Biointerfaces (BRCB), Malmö University, 20506 Malmö, Sweden
| | - Frank Schreiber
- Institut für Angewandte Physik, Universität Tübingen, Auf der Morgenstelle 10, 72076 Tübingen, Germany
| | - Tilo Seydel
- Institut Max von Laue─Paul Langevin (ILL), CS 20156, F-38042 Grenoble Cedex 9, France
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12
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Pal A, Kamal MA, Schurtenberger P. Structure and anisotropic dynamics of stimuli responsive colloidal ellipsoids at the nearest neighbor length scale. J Colloid Interface Sci 2022; 621:352-359. [DOI: 10.1016/j.jcis.2022.04.063] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2022] [Revised: 03/29/2022] [Accepted: 04/10/2022] [Indexed: 11/29/2022]
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13
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Fujii H, Terabayashi I, Kobayashi K, Watanabe M. Modeling photoacoustic pressure generation in colloidal suspensions at different volume fractions based on a multi-scale approach. PHOTOACOUSTICS 2022; 27:100368. [PMID: 35646589 PMCID: PMC9130529 DOI: 10.1016/j.pacs.2022.100368] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/19/2022] [Revised: 05/03/2022] [Accepted: 05/06/2022] [Indexed: 06/15/2023]
Abstract
Further development of quantitative photoacoustic tomography requires understanding the photoacoustic pressure generation by modeling the generation process. This study modeled the initial photoacoustic pressure in colloidal suspensions, used as tissue phantoms, at different volume fractions on a multi-scale approach. We modeled the thermodynamic and light scattering properties on a microscopic scale with/without treating the hard-sphere interaction between colloidal particles. Meanwhile, we did the light energy density on a macroscopic scale. We showed that the hard-sphere interaction significantly influences the initial pressure and related quantities at a high volume fraction except for the thermodynamic properties. We also showed the initial pressure at the absorber inside the medium logarithmically decreases with increasing the volume fractions. This result is mainly due to the decay of the light energy density with light scattering. Our numerical results suggest that modeling light scattering and propagation is crucial over modeling thermal expansion.
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14
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Raskar T, Niebling S, Devos JM, Yorke BA, Härtlein M, Huse N, Forsyth VT, Seydel T, Pearson AR. Structure and diffusive dynamics of aspartate α-decarboxylase (ADC) liganded with D-serine in aqueous solution. Phys Chem Chem Phys 2022; 24:20336-20347. [PMID: 35980136 PMCID: PMC9429672 DOI: 10.1039/d2cp02063g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Incoherent neutron spectroscopy, in combination with dynamic light scattering, was used to investigate the effect of ligand binding on the center-of-mass self-diffusion and internal diffusive dynamics of Escherichia coli aspartate α-decarboxylase (ADC). The X-ray crystal structure of ADC in complex with the d-serine inhibitor was also determined, and molecular dynamics simulations were used to further probe the structural rearrangements that occur as a result of ligand binding. These experiments reveal that d-serine forms hydrogen bonds with some of the active site residues, that higher order oligomers of the ADC tetramer exist on ns–ms time-scales, and also show that ligand binding both affects the ADC internal diffusive dynamics and appears to further increase the size of the higher order oligomers. Neutron spectroscopy, dynamic light scattering, X-ray diffraction, and MD-simulations were used to investigate the effect of ligand binding on the structure and diffusive dynamics of Escherichia coli aspartate alpha-decarboxylase.![]()
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Affiliation(s)
- Tushar Raskar
- Institut Max von Laue - Paul Langevin, 71 Avenue des Martyrs, Grenoble 38000, France. .,Partnership for Structural Biology, 71 Avenue des Martyrs, Grenoble 38000, France.,Institute for Nanostructure and Solid State Physics, Hamburg Centre for Ultrafast Imaging, Universität Hamburg, Luruper Chaussee 149, Hamburg, 22761, Germany.
| | - Stephan Niebling
- Institute for Nanostructure and Solid State Physics, Hamburg Centre for Ultrafast Imaging, Universität Hamburg, Luruper Chaussee 149, Hamburg, 22761, Germany. .,European Molecular Biology Laboratory, Hamburg, Notkestr. 85, 22607 Hamburg, Germany
| | - Juliette M Devos
- Institut Max von Laue - Paul Langevin, 71 Avenue des Martyrs, Grenoble 38000, France. .,Partnership for Structural Biology, 71 Avenue des Martyrs, Grenoble 38000, France
| | - Briony A Yorke
- School of Chemistry and Bioscience, University of Bradford, Bradford, BD7 1DP, UK
| | - Michael Härtlein
- Institut Max von Laue - Paul Langevin, 71 Avenue des Martyrs, Grenoble 38000, France. .,Partnership for Structural Biology, 71 Avenue des Martyrs, Grenoble 38000, France
| | - Nils Huse
- Institute for Nanostructure and Solid State Physics, Hamburg Centre for Ultrafast Imaging, Universität Hamburg, Luruper Chaussee 149, Hamburg, 22761, Germany.
| | - V Trevor Forsyth
- Institut Max von Laue - Paul Langevin, 71 Avenue des Martyrs, Grenoble 38000, France. .,Partnership for Structural Biology, 71 Avenue des Martyrs, Grenoble 38000, France.,Faculty of Natural Sciences, Keele University, Staffordshire, ST5 5BG, UK
| | - Tilo Seydel
- Institut Max von Laue - Paul Langevin, 71 Avenue des Martyrs, Grenoble 38000, France.
| | - Arwen R Pearson
- Institute for Nanostructure and Solid State Physics, Hamburg Centre for Ultrafast Imaging, Universität Hamburg, Luruper Chaussee 149, Hamburg, 22761, Germany.
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15
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Fujiwara S. Dynamical Behavior of Disordered Regions in Disease-Related Proteins Revealed by Quasielastic Neutron Scattering. MEDICINA (KAUNAS, LITHUANIA) 2022; 58:795. [PMID: 35744058 PMCID: PMC9230977 DOI: 10.3390/medicina58060795] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/27/2022] [Accepted: 06/08/2022] [Indexed: 06/15/2023]
Abstract
Background and Objectives: Intrinsically disordered proteins (IDPs) and proteins containing intrinsically disordered regions (IDRs) are known to be involved in various human diseases. Since the IDPs/IDRs are fluctuating between many structural substrates, the dynamical behavior of the disease-related IDPs/IDRs needs to be characterized to elucidate the mechanisms of the pathogenesis of the diseases. As protein motions have a hierarchy ranging from local side-chain motions, through segmental motions of loops or disordered regions, to diffusive motions of entire molecules, segmental motions, as well as local motions, need to be characterized. Materials and Methods: Combined analysis of quasielastic neutron scattering (QENS) spectra with the structural data provides information on both the segmental motions and the local motions of the IDPs/IDRs. Here, this method is applied to re-analyze the QENS spectra of the troponin core domain (Tn-CD), various mutants of which cause the pathogenesis of familial cardiomyopathy (FCM), and α-synuclein (αSyn), amyloid fibril formation of which is closely related to the pathogenesis of Parkinson's disease, collected in the previous studies. The dynamical behavior of wild-type Tn-CD, FCM-related mutant Tn-CD, and αSyn in the different propensity states for fibril formation is characterized. Results: In the Tn-CD, the behavior of the segmental motions is shown to be different between the wild type and the mutant. This difference is likely to arise from changes in the intramolecular interactions, which are suggested to be related to the functional aberration of the mutant Tn-CD. In αSyn, concerted enhancement of the segmental motions and the local motions is observed with an increased propensity for fibril formation, suggesting the importance of these motions in fibril formation. Conclusions: Characterization of the segmental motions as well as the local motions is thus useful for discussing how the changes in dynamical behavior caused by the disease-related mutations and/or environmental changes could be related to the functional and/or behavioral aberrations of these proteins.
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Affiliation(s)
- Satoru Fujiwara
- Institute for Quantum Biology, National Institutes for Quantum Science and Technology, 2-4 Shirakata, Tokai, Ibaraki 319-1106, Japan
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16
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Jung D, Uttinger MJ, Malgaretti P, Peukert W, Walter J, Harting J. Hydrodynamic simulations of sedimenting dilute particle suspensions under repulsive DLVO interactions. SOFT MATTER 2022; 18:2157-2167. [PMID: 35212700 DOI: 10.1039/d1sm01294k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
We present guidelines to estimate the effect of electrostatic repulsion in sedimenting dilute particle suspensions. Our results are based on combined Langevin dynamics and lattice Boltzmann simulations for a range of particle radii, Debye lengths and particle concentrations. They show a simple relationship between the slope K of the concentration-dependent sedimentation velocity and the range χ of the electrostatic repulsion normalized by the average particle-particle distance. When χ → 0, the particles are too far away from each other to interact electrostatically and K = 6.55 as predicted by the theory of Batchelor. As χ increases, K likewise increases as if the particle radius increased in proportion to χ up to a maximum around χ = 0.4. Over the range χ = 0.4-1, K relaxes exponentially to a concentration-dependent constant consistent with known results for ordered particle distributions. Meanwhile the radial distribution function transitions from a disordered gas-like to a liquid-like form. Power law fits to the concentration-dependent sedimentation velocity similarly yield a simple master curve for the exponent as a function of χ, with a step-like transition from 1 to 1/3 centered around χ = 0.6.
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Affiliation(s)
- David Jung
- Helmholtz Institute Erlangen-Nürnberg for Renewable Energy, Forschungszentrum Jülich, Fürther Straße 248, 90429 Nürnberg, Germany
- Department of Physics, Friedrich-Alexander-Universität Erlangen-Nürnberg, Fürther Straße 248, 90429 Nürnberg, Germany
| | - Maximilian Johannes Uttinger
- Institute of Particle Technology (LFG), Friedrich-Alexander-Universität Erlangen Nürnberg (FAU), Cauerstraße 4, 91058 Erlangen, Germany
- Interdisciplinary Center for Functional Particle Systems (FPS), Friedrich-Alexander Universität Erlangen-Nürnberg, Haberstraße 9a, 91058 Erlangen, Germany
| | - Paolo Malgaretti
- Helmholtz Institute Erlangen-Nürnberg for Renewable Energy, Forschungszentrum Jülich, Fürther Straße 248, 90429 Nürnberg, Germany
| | - Wolfgang Peukert
- Institute of Particle Technology (LFG), Friedrich-Alexander-Universität Erlangen Nürnberg (FAU), Cauerstraße 4, 91058 Erlangen, Germany
- Interdisciplinary Center for Functional Particle Systems (FPS), Friedrich-Alexander Universität Erlangen-Nürnberg, Haberstraße 9a, 91058 Erlangen, Germany
| | - Johannes Walter
- Institute of Particle Technology (LFG), Friedrich-Alexander-Universität Erlangen Nürnberg (FAU), Cauerstraße 4, 91058 Erlangen, Germany
- Interdisciplinary Center for Functional Particle Systems (FPS), Friedrich-Alexander Universität Erlangen-Nürnberg, Haberstraße 9a, 91058 Erlangen, Germany
| | - Jens Harting
- Helmholtz Institute Erlangen-Nürnberg for Renewable Energy, Forschungszentrum Jülich, Fürther Straße 248, 90429 Nürnberg, Germany
- Department of Physics, Friedrich-Alexander-Universität Erlangen-Nürnberg, Fürther Straße 248, 90429 Nürnberg, Germany
- Department of Chemical and Biological Engineering, Friedrich-Alexander-Universität Erlangen-Nürnberg, Fürther Straße 248, 90429 Nürnberg, Germany.
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17
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Fagerberg E, Lenton S, Nylander T, Seydel T, Skepö M. Self-Diffusive Properties of the Intrinsically Disordered Protein Histatin 5 and the Impact of Crowding Thereon: A Combined Neutron Spectroscopy and Molecular Dynamics Simulation Study. J Phys Chem B 2022; 126:789-801. [PMID: 35044776 PMCID: PMC8819652 DOI: 10.1021/acs.jpcb.1c08976] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
![]()
Intrinsically disordered
proteins (IDPs) are proteins that, in
comparison with globular/structured proteins, lack a distinct tertiary
structure. Here, we use the model IDP, Histatin 5, for studying its
dynamical properties under self-crowding conditions with quasi-elastic
neutron scattering in combination with full atomistic molecular dynamics
(MD) simulations. The aim is to determine the effects of crowding
on the center-of-mass diffusion as well as the internal diffusive
behavior. The diffusion was found to decrease significantly, which
we hypothesize can be attributed to some degree of aggregation at
higher protein concentrations, (≥100 mg/mL), as indicated by
recent small-angle X-ray scattering studies. Temperature effects are
also considered and found to, largely, follow Stokes–Einstein
behavior. Simple geometric considerations fail to accurately predict
the rates of diffusion, while simulations show semiquantitative agreement
with experiments, dependent on assumptions of the ratio between translational
and rotational diffusion. A scaling law that previously was found
to successfully describe the behavior of globular proteins was found
to be inadequate for the IDP, Histatin 5. Analysis of the MD simulations
show that the width of the distribution with respect to diffusion
is not a simplistic mirroring of the distribution of radius of gyration,
hence, displaying the particular features of IDPs that need to be
accounted for.
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Affiliation(s)
- Eric Fagerberg
- Theoretical Chemistry, Lund University, POB 124, SE-221 00 Lund, Sweden
| | - Samuel Lenton
- Physical Chemistry, Lund University, POB 124, SE-221 00 Lund, Sweden
| | - Tommy Nylander
- Physical Chemistry, Lund University, POB 124, SE-221 00 Lund, Sweden
| | - Tilo Seydel
- Institut Max von Laue - Paul Langevin, 71 avenue des Martyrs, CS 20156, F-38042 Grenoble, France
| | - Marie Skepö
- Theoretical Chemistry, Lund University, POB 124, SE-221 00 Lund, Sweden.,LINXS - Lund Institute of Advanced Neutron and X-ray Science, Scheelevägen 19, SE-223 70 Lund, Sweden
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18
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Klett K, Cherstvy AG, Shin J, Sokolov IM, Metzler R. Non-Gaussian, transiently anomalous, and ergodic self-diffusion of flexible dumbbells in crowded two-dimensional environments: Coupled translational and rotational motions. Phys Rev E 2022; 104:064603. [PMID: 35030844 DOI: 10.1103/physreve.104.064603] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2021] [Accepted: 11/18/2021] [Indexed: 12/22/2022]
Abstract
We employ Langevin-dynamics simulations to unveil non-Brownian and non-Gaussian center-of-mass self-diffusion of massive flexible dumbbell-shaped particles in crowded two-dimensional solutions. We study the intradumbbell dynamics of the relative motion of the two constituent elastically coupled disks. Our main focus is on effects of the crowding fraction ϕ and of the particle structure on the diffusion characteristics. We evaluate the time-averaged mean-squared displacement (TAMSD), the displacement probability-density function (PDF), and the displacement autocorrelation function (ACF) of the dimers. For the TAMSD at highly crowded conditions of dumbbells, e.g., we observe a transition from the short-time ballistic behavior, via an intermediate subdiffusive regime, to long-time Brownian-like spreading dynamics. The crowded system of dimers exhibits two distinct diffusion regimes distinguished by the scaling exponent of the TAMSD, the dependence of the diffusivity on ϕ, and the features of the displacement-ACF. We attribute these regimes to a crowding-induced transition from viscous to viscoelastic diffusion upon growing ϕ. We also analyze the relative motion in the dimers, finding that larger ϕ suppress their vibrations and yield strongly non-Gaussian PDFs of rotational displacements. For the diffusion coefficients D(ϕ) of translational and rotational motion of the dumbbells an exponential decay with ϕ for weak and a power-law variation D(ϕ)∝(ϕ-ϕ^{★})^{2.4} for strong crowding is found. A comparison of simulation results with theoretical predictions for D(ϕ) is discussed and some relevant experimental systems are overviewed.
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Affiliation(s)
- Kolja Klett
- Institute of Physics & Astronomy, University of Potsdam, 14476 Potsdam-Golm, Germany
| | - Andrey G Cherstvy
- Institute of Physics & Astronomy, University of Potsdam, 14476 Potsdam-Golm, Germany.,Institut für Physik, Humboldt-Universität zu Berlin, Newtonstraße 15, 12489 Berlin, Germany
| | - Jaeoh Shin
- Department of Chemistry, Rice University, Houston, Texas 77005, USA.,Center for Theoretical Biological Physics, Rice University, Houston, Texas 77005, USA
| | - Igor M Sokolov
- Institut für Physik, Humboldt-Universität zu Berlin, Newtonstraße 15, 12489 Berlin, Germany.,IRIS Adlershof, Zum Großen Windkanal 6, 12489 Berlin, Germany
| | - Ralf Metzler
- Institute of Physics & Astronomy, University of Potsdam, 14476 Potsdam-Golm, Germany
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19
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Wani YM, Kovakas PG, Nikoubashman A, Howard MP. Diffusion and sedimentation in colloidal suspensions using multiparticle collision dynamics with a discrete particle model. J Chem Phys 2022; 156:024901. [PMID: 35032985 DOI: 10.1063/5.0075002] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We study self-diffusion and sedimentation in colloidal suspensions of nearly hard spheres using the multiparticle collision dynamics simulation method for the solvent with a discrete mesh model for the colloidal particles (MD+MPCD). We cover colloid volume fractions from 0.01 to 0.40 and compare the MD+MPCD simulations to experimental data and Brownian dynamics simulations with free-draining hydrodynamics (BD) as well as pairwise far-field hydrodynamics described using the Rotne-Prager-Yamakawa mobility tensor (BD+RPY). The dynamics in MD+MPCD suggest that the colloidal particles are only partially coupled to the solvent at short times. However, the long-time self-diffusion coefficient in MD+MPCD is comparable to that in experiments, and the sedimentation coefficient in MD+MPCD is in good agreement with that in experiments and BD+RPY, suggesting that MD+MPCD gives a reasonable description of hydrodynamic interactions in colloidal suspensions. The discrete-particle MD+MPCD approach is convenient and readily extended to more complex shapes, and we determine the long-time self-diffusion coefficient in suspensions of nearly hard cubes to demonstrate its generality.
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Affiliation(s)
- Yashraj M Wani
- Institute of Physics, Johannes Gutenberg University Mainz, Staudingerweg 7, 55128 Mainz, Germany
| | | | - Arash Nikoubashman
- Institute of Physics, Johannes Gutenberg University Mainz, Staudingerweg 7, 55128 Mainz, Germany
| | - Michael P Howard
- Department of Chemical Engineering, Auburn University, Auburn, Alabama 36849, USA
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20
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Geometrical Influence on Particle Transport in Cross-Flow Ultrafiltration: Cylindrical and Flat Sheet Membranes. MEMBRANES 2021; 11:membranes11120960. [PMID: 34940461 PMCID: PMC8705108 DOI: 10.3390/membranes11120960] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/08/2021] [Revised: 11/29/2021] [Accepted: 12/01/2021] [Indexed: 11/23/2022]
Abstract
Cross-flow membrane ultrafiltration (UF) is used for the enrichment and purification of small colloidal particles and proteins. We explore the influence of different membrane geometries on the particle transport in, and the efficiency of, inside-out cross-flow UF. For this purpose, we generalize the accurate and numerically efficient modified boundary layer approximation (mBLA) method, developed in recent work by us for a hollow cylindrical membrane, to parallel flat sheet geometries with one or two solvent-permeable membrane sheets. Considering a reference dispersion of Brownian hard spheres where accurate expressions for its transport properties are available, the generalized mBLA method is used to analyze how particle transport and global UF process indicators are affected by varying operating parameters and the membrane geometry. We show that global process indicators including the mean permeate flux, the solvent recovery indicator, and the concentration factor are strongly dependent on the membrane geometry. A key finding is that irrespective of the many input parameters characterizing an UF experiment and its membrane geometry, the process indicators are determined by three independent dimensionless variables only. This finding can be very useful in the design, optimization, and scale-up of UF processes.
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21
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Keita C, Hallez Y, Salmon JB. Microfluidic osmotic compression of a charge-stabilized colloidal dispersion: Equation of state and collective diffusion coefficient. Phys Rev E 2021; 104:L062601. [PMID: 35030960 DOI: 10.1103/physreve.104.l062601] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2021] [Accepted: 11/24/2021] [Indexed: 06/14/2023]
Abstract
We show, using a model coupling mass transport and liquid theory calculations for a charge-stabilized colloidal dispersion, that diffusion significantly limits measurement times of its equation of state (EOS), osmotic pressure vs composition, using the osmotic compression technique. Following this result, we present a microfluidic chip allowing one to measure the entire EOS of a charged dispersion at the nanoliter scale in a few hours. We also show that time-resolved analyses of relaxation to equilibrium in this microfluidic experiment lead to direct estimates of the collective diffusion coefficient of the dispersion in Donnan equilibrium with a salt reservoir.
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Affiliation(s)
- Camille Keita
- CNRS, Solvay, LOF, UMR 5258, Université Bordeaux, F-33600 Pessac, France
| | - Yannick Hallez
- Laboratoire de Génie Chimique, Université de Toulouse, CNRS, INPT, UPS, Toulouse, France
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22
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Ilhan B, Mugele F, Duits MHG. Roughness induced rotational slowdown near the colloidal glass transition. J Colloid Interface Sci 2021; 607:1709-1716. [PMID: 34592556 DOI: 10.1016/j.jcis.2021.08.212] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2021] [Revised: 08/30/2021] [Accepted: 08/31/2021] [Indexed: 11/26/2022]
Abstract
HYPOTHESIS In concentrated suspensions, the dynamics of colloids are strongly influenced by the shape and topographical surface characteristics of the particles. As the particles get into close proximity, surface roughness alters the translational and rotational Brownian motions in different ways. Eventually, the rotations will get frustrated due to geometric hindrance from interacting asperities. EXPERIMENTS We use model raspberry-like colloids to study the effect of roughness on the translational and rotational dynamics. Using Confocal Scanning Laser Microscopy and particle tracking, we simultaneously resolve the two types of Brownian motion and obtain the corresponding Mean Squared Displacements for varying concentrations up to the maximum packing fraction. FINDINGS Roughness not only lowers the concentration of the translational colloidal glass transition, but also generates a broad concentration range in which the rotational Brownian motion changes signature from high-amplitude diffusive to low-amplitude rattling. This hitherto not reported second glass transition for rough spherical colloids emerges when the particle intersurface distance becomes comparable to the roughness length scale. Our work provides a unifying understanding of the surface characteristics' effect on the rotational dynamics during glass formation and provides a microscopic foundation for many roughness-related macroscale phenomena in nature and technology.
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Affiliation(s)
- Beybin Ilhan
- Physics of Complex Fluids, Faculty of Science and Technology, MESA+ Institute for Nanotechnology, University of Twente, Enschede 7500 AE, the Netherlands.
| | - Frieder Mugele
- Physics of Complex Fluids, Faculty of Science and Technology, MESA+ Institute for Nanotechnology, University of Twente, Enschede 7500 AE, the Netherlands
| | - Michael H G Duits
- Physics of Complex Fluids, Faculty of Science and Technology, MESA+ Institute for Nanotechnology, University of Twente, Enschede 7500 AE, the Netherlands.
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23
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Beck C, Grimaldo M, Braun MK, Bühl L, Matsarskaia O, Jalarvo NH, Zhang F, Roosen-Runge F, Schreiber F, Seydel T. Temperature and salt controlled tuning of protein clusters. SOFT MATTER 2021; 17:8506-8516. [PMID: 34490428 DOI: 10.1039/d1sm00418b] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
The formation of molecular assemblies in protein solutions is of strong interest both from a fundamental viewpoint and for biomedical applications. While ordered and desired protein assemblies are indispensable for some biological functions, undesired protein condensation can induce serious diseases. As a common cofactor, the presence of salt ions is essential for some biological processes involving proteins, and in aqueous suspensions of proteins can also give rise to complex phase diagrams including homogeneous solutions, large aggregates, and dissolution regimes. Here, we systematically study the cluster formation approaching the phase separation in aqueous solutions of the globular protein BSA as a function of temperature (T), the protein concentration (cp) and the concentrations of the trivalent salts YCl3 and LaCl3 (cs). As an important complement to structural, i.e. time-averaged, techniques we employ a dynamical technique that can detect clusters even when they are transient on the order of a few nanoseconds. By employing incoherent neutron spectroscopy, we unambiguously determine the short-time self-diffusion of the protein clusters depending on cp, cs and T. We determine the cluster size in terms of effective hydrodynamic radii as manifested by the cluster center-of-mass diffusion coefficients D. For both salts, we find a simple functional form D(cp, cs, T) in the parameter range explored. The calculated inter-particle attraction strength, determined from the microscopic and short-time diffusive properties of the samples, increases with salt concentration and temperature in the regime investigated and can be linked to the macroscopic behavior of the samples.
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Affiliation(s)
- Christian Beck
- Institut für Angewandte Physik, Universität Tübingen, Auf der Morgenstelle 10, 72076 Tübingen, Germany
- Institut Max von Laue - Paul Langevin, 71 avenue des Martyrs, 38042 Grenoble, France.
| | - Marco Grimaldo
- Institut Max von Laue - Paul Langevin, 71 avenue des Martyrs, 38042 Grenoble, France.
| | - Michal K Braun
- Institut für Angewandte Physik, Universität Tübingen, Auf der Morgenstelle 10, 72076 Tübingen, Germany
| | - Lena Bühl
- Institut für Angewandte Physik, Universität Tübingen, Auf der Morgenstelle 10, 72076 Tübingen, Germany
| | - Olga Matsarskaia
- Institut Max von Laue - Paul Langevin, 71 avenue des Martyrs, 38042 Grenoble, France.
| | - Niina H Jalarvo
- Jülich Centre for Neutron Science (JCNS), Forschungszentrum Jülich GmbH, D-52425 Jülich, Germany
- Chemical and Engineering Materials Division, Neutron Sciences Directorate, and JCNS Outstation at the Spallation Neutron Source (SNS), Oak Ridge National Laboratory, P.O. Box 2008, Oak Ridge, Tennessee 37831, USA
| | - Fajun Zhang
- Institut für Angewandte Physik, Universität Tübingen, Auf der Morgenstelle 10, 72076 Tübingen, Germany
| | - Felix Roosen-Runge
- Department of Biomedical Sciences and Biofilms-Research Center for Biointerfaces (BRCB), Malmö University, 20506 Malmö, Sweden.
- Division of Physical Chemistry, Lund University, Naturvetarvägen 14, 22100 Lund, Sweden
| | - Frank Schreiber
- Institut für Angewandte Physik, Universität Tübingen, Auf der Morgenstelle 10, 72076 Tübingen, Germany
| | - Tilo Seydel
- Institut Max von Laue - Paul Langevin, 71 avenue des Martyrs, 38042 Grenoble, France.
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24
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Dallari F, Jain A, Sikorski M, Möller J, Bean R, Boesenberg U, Frenzel L, Goy C, Hallmann J, Kim Y, Lokteva I, Markmann V, Mills G, Rodriguez-Fernandez A, Roseker W, Scholz M, Shayduk R, Vagovic P, Walther M, Westermeier F, Madsen A, Mancuso AP, Grübel G, Lehmkühler F. Microsecond hydrodynamic interactions in dense colloidal dispersions probed at the European XFEL. IUCRJ 2021; 8:775-783. [PMID: 34584738 PMCID: PMC8420773 DOI: 10.1107/s2052252521006333] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/29/2021] [Accepted: 06/18/2021] [Indexed: 06/13/2023]
Abstract
Many soft-matter systems are composed of macromolecules or nanoparticles suspended in water. The characteristic times at intrinsic length scales of a few nanometres fall therefore in the microsecond and sub-microsecond time regimes. With the development of free-electron lasers (FELs) and fourth-generation synchrotron light-sources, time-resolved experiments in such time and length ranges will become routinely accessible in the near future. In the present work we report our findings on prototypical soft-matter systems, composed of charge-stabilized silica nanoparticles dispersed in water, with radii between 12 and 15 nm and volume fractions between 0.005 and 0.2. The sample dynamics were probed by means of X-ray photon correlation spectroscopy, employing the megahertz pulse repetition rate of the European XFEL and the Adaptive Gain Integrating Pixel Detector. We show that it is possible to correctly identify the dynamical properties that determine the diffusion constant, both for stationary samples and for systems driven by XFEL pulses. Remarkably, despite the high photon density the only observable induced effect is the heating of the scattering volume, meaning that all other X-ray induced effects do not influence the structure and the dynamics on the probed timescales. This work also illustrates the potential to control such induced heating and it can be predicted with thermodynamic models.
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Affiliation(s)
- Francesco Dallari
- Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - Avni Jain
- Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - Marcin Sikorski
- European X-ray Free-Electron Laser, 22869 Schenefeld, Germany
| | - Johannes Möller
- European X-ray Free-Electron Laser, 22869 Schenefeld, Germany
| | - Richard Bean
- European X-ray Free-Electron Laser, 22869 Schenefeld, Germany
| | | | - Lara Frenzel
- Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - Claudia Goy
- Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - Jörg Hallmann
- European X-ray Free-Electron Laser, 22869 Schenefeld, Germany
| | - Yoonhee Kim
- European X-ray Free-Electron Laser, 22869 Schenefeld, Germany
| | - Irina Lokteva
- Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
- The Hamburg Centre for Ultrafast Imaging, 22761 Hamburg, Germany
| | - Verena Markmann
- Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - Grant Mills
- European X-ray Free-Electron Laser, 22869 Schenefeld, Germany
| | | | - Wojciech Roseker
- Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - Markus Scholz
- European X-ray Free-Electron Laser, 22869 Schenefeld, Germany
| | - Roman Shayduk
- European X-ray Free-Electron Laser, 22869 Schenefeld, Germany
| | - Patrik Vagovic
- European X-ray Free-Electron Laser, 22869 Schenefeld, Germany
| | - Michael Walther
- Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - Fabian Westermeier
- Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - Anders Madsen
- European X-ray Free-Electron Laser, 22869 Schenefeld, Germany
| | - Adrian P. Mancuso
- European X-ray Free-Electron Laser, 22869 Schenefeld, Germany
- Department of Chemistry and Physics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, VC 3086, Australia
| | - Gerhard Grübel
- Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
- The Hamburg Centre for Ultrafast Imaging, 22761 Hamburg, Germany
| | - Felix Lehmkühler
- Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
- The Hamburg Centre for Ultrafast Imaging, 22761 Hamburg, Germany
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25
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Wang Y, Ouyang J, Wang X. Machine learning of lubrication correction based on GPR for the coupled DPD-DEM simulation of colloidal suspensions. SOFT MATTER 2021; 17:5682-5699. [PMID: 34008648 DOI: 10.1039/d1sm00250c] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Hydrodynamic interactions have a major impact on the suspension properties, but they are absent in atomic and molecular fluids due to a lack of intervening medium at close range. To reproduce the correct hydrodynamic interactions, lubrication correction is essential to compensate the missing short-range hydrodynamics from the fluids. However, lubrication correction requires many simulations in particle-based simulations of colloidal suspensions. To address the problem, we employ an active learning strategy based on Gaussian process regression (GPR) for normal and tangential lubrication corrections to significantly reduce the number of necessary simulations and apply the correction to the coupled multiscale simulation of monodisperse hard-sphere colloidal suspensions. In particular, a single-particle dissipative particle dynamics (DPD) model with parameter correction is used to describe the solvent-solvent and colloid-solvent interactions, and a discrete element method (DEM) model to depict the colloid-colloid frictional contacts. The lubrication correction results demonstrate that only six and four independent simulations (observation points for GPR training) are required to achieve accurate normal and tangential lubrication corrections, respectively. To validate the machine learning of lubrication correction based on GPR, we investigate the self-diffusion coefficients of colloids, suspension rheology and microstructure using the coupled DPD-DEM model with GPR lubrication correction. Our simulation results show that the machine learning of lubrication correction based on GPR is effective and the lubrication corrected DPD-DEM model is indeed capable of accurately capturing hydrodynamic interactions and correctly reproducing dynamical and rheological properties of colloidal suspensions. Moreover, the machine learning of lubrication correction based on GPR is not limited to the coupled DPD-DEM simulation of colloidal suspensions presented here, but can be easily applied to other particle-based simulations of particulate suspensions.
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Affiliation(s)
- Yi Wang
- School of Mathematics and Statistics, Northwestern Polytechnical University, Xi'an 710129, China.
| | - Jie Ouyang
- School of Mathematics and Statistics, Northwestern Polytechnical University, Xi'an 710129, China.
| | - Xiaodong Wang
- School of Mathematics and Statistics, Northwestern Polytechnical University, Xi'an 710129, China.
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Ahfir R, Elkhaoui S, Khatouri M, Lemaalem M, Talha L, Filali M. Probing the balance of Telechelic Polymers Bridging and Screened-Coulomb Interactions in Microemulsion System. IOP CONFERENCE SERIES: MATERIALS SCIENCE AND ENGINEERING 2021; 1160:012002. [DOI: 10.1088/1757-899x/1160/1/012002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/01/2023]
Abstract
Abstract
The structural properties of neutral oil-in-water (O/W) microemulsions nanodroplets in the presence of telechelic polymers PEO modified with two hydrophobic end functions (PEO- 2m) were studied by Small-Angle Neutron Scattering (SANS). We show that the unknown attractive interaction introduced by the addition of PEO-2m, can could be balanced by a known repulsion interaction due to the addition of a cationic surfactant Cp +, which causes a progressive transformation of the bridges connecting the nanodroplets into loops. For this, we compute the structure factor S(q) with an effective pair potential, using the Ornstein Zernicke (OZ) integral equation approach with the Hypernetted Chain (HNC) closure relation. Generally, the agreement between the neutron scattering spectra and the numerical study is reasonable and allows a detailed description for each sample.
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Roosen-Runge F, Schurtenberger P, Stradner A. Self-diffusion of nonspherical particles fundamentally conflicts with effective sphere models. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2021; 33:154002. [PMID: 33498038 DOI: 10.1088/1361-648x/abdff9] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2020] [Accepted: 01/26/2021] [Indexed: 06/12/2023]
Abstract
Modeling diffusion of nonspherical particles presents an unsolved and considerable challenge, despite its importance for the understanding of crowding effects in biology, food technology and formulation science. A common approach in experiment and simulation is to map nonspherical objects on effective spheres to subsequently use the established predictions for spheres to approximate phenomena for nonspherical particles. Using numerical evaluation of the hydrodynamic mobility tensor, we show that this so-called effective sphere model fundamentally fails to represent the self-diffusion in solutions of ellipsoids as well as rod-like assemblies of spherical beads. The effective sphere model drastically overestimates the slowing down of self-diffusion down to volume fractions below 0.01. Furthermore, even the linear term relevant at lower volume fraction is inaccurate, linked to a fundamental misconception of effective sphere models. To overcome the severe problems related with the use of effective sphere models, we suggest a protocol to predict the short-time self-diffusion of rod-like systems, based on simulations with hydrodynamic interactions that become feasible even for more complex molecules as the essential observable shows a negligible system-size effect.
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Affiliation(s)
- Felix Roosen-Runge
- Division of Physical Chemistry, Lund University, Naturvetarvägen 14, 22100 Lund, Sweden
- Department of Biomedical Sciences and Biofilms-Research Center for Biointerfaces (BRCB), Faculty of Health and Society, Malmö University, Sweden
| | - Peter Schurtenberger
- Division of Physical Chemistry, Lund University, Naturvetarvägen 14, 22100 Lund, Sweden
| | - Anna Stradner
- Division of Physical Chemistry, Lund University, Naturvetarvägen 14, 22100 Lund, Sweden
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28
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Alexander NP, Phillips RJ, Dungan SR. Multicomponent diffusion of interacting, nonionic micelles with hydrophobic solutes. SOFT MATTER 2021; 17:531-542. [PMID: 33174585 DOI: 10.1039/d0sm01406k] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Ternary diffusion coefficient matrices [D] were measured using the Taylor dispersion method, for crowded aqueous solutions of decaethylene glycol monododecyl ether (C12E10) with either decane or limonene solute. The matrix [D], for both systems, was found to be highly non-diagonal, and concentration dependent, over a broad domain of solute to surfactant molar ratios and micelle volume fractions. A recently developed theoretical model, based on Batchelor's theory for gradient diffusion in dilute, polydisperse mixtures of interacting spheres, was simplified by neglecting local polydispersity, and effectively used to predict [D] with no adjustable parameters. Even though the model originates from dilute theory, the theoretical results were in surprisingly good agreement with experimental data for concentrated mixtures, with volume fractions up to φ≈ 0.47. In addition, the theory predicts eigenvalues D- and D+ that correspond to long-time self and gradient diffusion coefficients, respectively, for monodisperse spheres, in reasonable agreement with experimental data.
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Affiliation(s)
- Nathan P Alexander
- Department of Chemical Engineering, University of California at Davis, Davis, CA 95616, USA.
| | - Ronald J Phillips
- Department of Chemical Engineering, University of California at Davis, Davis, CA 95616, USA.
| | - Stephanie R Dungan
- Department of Chemical Engineering, University of California at Davis, Davis, CA 95616, USA. and Department of Food Science and Technology, University of California at Davis, Davis, CA 95616, USA
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29
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Sobac B, Dehaeck S, Bouchaudy A, Salmon JB. Collective diffusion coefficient of a charged colloidal dispersion: interferometric measurements in a drying drop. SOFT MATTER 2020; 16:8213-8225. [PMID: 32797140 DOI: 10.1039/d0sm00860e] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
In the present work, we use Mach-Zehnder interferometry to thoroughly investigate the drying dynamics of a 2D confined drop of a charged colloidal dispersion. This technique makes it possible to measure the colloid concentration field during the drying of the drop at a high accuracy (about 0.5%) and with a high temporal and spatial resolution (about 1 frame per s and 5 μm per pixel). These features allow us to probe mass transport of the charged dispersion in this out-of-equilibrium situation. In particular, our experiments provide the evidence that mass transport within the drop can be described by a purely diffusive process for some range of parameters for which the buoyancy-driven convection is negligible. We are then able to extract from these experiments the collective diffusion coefficient of the dispersion D(φ) over a wide concentration range φ = 0.24-0.5, i.e. from the liquid dispersed state to the solid glass regime, with a high accuracy. The measured values of D(φ) ≃ 5-12D0 are significantly larger than the simple estimate D0 given by the Stokes-Einstein relation, thus highlighting the important role played by the colloidal interactions in such dispersions.
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Affiliation(s)
- Benjamin Sobac
- TIPs Lab, Université libre de Bruxelles, 1050 Brussels, Belgium.
| | - Sam Dehaeck
- TIPs Lab, Université libre de Bruxelles, 1050 Brussels, Belgium.
| | - Anne Bouchaudy
- CNRS, Solvay, LOF, UMR 5258, Univ. Bordeaux, F-33600 Pessac, France.
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30
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Seydel T, Koza MM, Matsarskaia O, André A, Maiti S, Weber M, Schweins R, Prévost S, Schreiber F, Scheele M. A neutron scattering perspective on the structure, softness and dynamics of the ligand shell of PbS nanocrystals in solution. Chem Sci 2020; 11:8875-8884. [PMID: 34123141 PMCID: PMC8163380 DOI: 10.1039/d0sc02636k] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2020] [Accepted: 08/01/2020] [Indexed: 12/02/2022] Open
Abstract
Small-angle neutron and X-ray scattering, neutron backscattering and neutron time-of-flight spectroscopy are applied to reveal the structure of the ligand shell, the temperature-dependent diffusion properties and the phonon spectrum of PbS nanocrystals functionalized with oleic acid in deuterated hexane. The nanocrystals decorated with oleic acid as well as the desorbed ligand molecules exhibit simple Brownian diffusion with a Stokes-Einstein temperature-dependence and inhibited freezing. Ligand molecules desorbed from the surface show strong spatial confinement. The phonon spectrum of oleic acid adsorbed to the nanocrystal surface exhibits hybrid modes with a predominant Pb-character. Low-energy surface modes of the NCs are prominent and indicate a large mechanical softness in solution. This work provides comprehensive insights into the ligand-particle interaction of colloidal nanocrystals in solution and highlights its effect on the diffusion and vibrational properties as well as their mechanical softness.
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Affiliation(s)
- Tilo Seydel
- Institut Max von Laue - Paul Langevin (ILL) 71 Avenue des Martyrs, CS 20156 38042 Grenoble Cedex 9 France
| | - Michael Marek Koza
- Institut Max von Laue - Paul Langevin (ILL) 71 Avenue des Martyrs, CS 20156 38042 Grenoble Cedex 9 France
| | - Olga Matsarskaia
- Institut Max von Laue - Paul Langevin (ILL) 71 Avenue des Martyrs, CS 20156 38042 Grenoble Cedex 9 France
| | - Alexander André
- Institute of Physical and Theoretical Chemistry, University of Tübingen Auf der Morgenstelle 18 72076 Tübingen Germany
| | - Santanu Maiti
- Institute of Applied Physics, University of Tübingen Auf der Morgenstelle 10 72076 Tübingen Germany
| | - Michelle Weber
- Institute of Physical and Theoretical Chemistry, University of Tübingen Auf der Morgenstelle 18 72076 Tübingen Germany
| | - Ralf Schweins
- Institut Max von Laue - Paul Langevin (ILL) 71 Avenue des Martyrs, CS 20156 38042 Grenoble Cedex 9 France
| | - Sylvain Prévost
- ESRF - The European Synchrotron 71 Avenue des Martyrs, CS 40220 38043 Grenoble Cedex 9 France
| | - Frank Schreiber
- Institute of Applied Physics, University of Tübingen Auf der Morgenstelle 10 72076 Tübingen Germany
- Center for Light-Matter Interaction, Sensors & Analytics LISA+, University of Tübingen Auf der Morgenstelle 15 72076 Tübingen Germany
| | - Marcus Scheele
- Institute of Physical and Theoretical Chemistry, University of Tübingen Auf der Morgenstelle 18 72076 Tübingen Germany
- Center for Light-Matter Interaction, Sensors & Analytics LISA+, University of Tübingen Auf der Morgenstelle 15 72076 Tübingen Germany
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31
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Silmore KS, Swan JW. Collective mode Brownian dynamics: A method for fast relaxation of statistical ensembles. J Chem Phys 2020; 152:094104. [DOI: 10.1063/1.5129648] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Kevin S. Silmore
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
| | - James W. Swan
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
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32
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Stradner A, Schurtenberger P. Potential and limits of a colloid approach to protein solutions. SOFT MATTER 2020; 16:307-323. [PMID: 31830196 DOI: 10.1039/c9sm01953g] [Citation(s) in RCA: 43] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
Looking at globular proteins with the eyes of a colloid scientist has a long tradition, in fact a significant part of the early colloid literature was focused on protein solutions. However, it has also been recognized that proteins are much more complex than the typical hard sphere-like synthetic model colloids. Proteins are not perfect spheres, their interaction potentials are in general not isotropic, and using theories developed for such particles are thus clearly inadequate in many cases. In this perspective article, we now take a closer look at the field. In particular, we reflect on the fact that modern colloid science has been undergoing a tremendous development, where a multitude of novel systems have been developed in the lab and in silico. During the last decade we have seen a rapidly increasing number of reports on the synthesis of anisotropic, patchy and/or responsive synthetic colloids, that start to resemble their complex biological counterparts. This experimental development is also reflected in a corresponding theoretical and simulation effort. The experimental and theoretical toolbox of colloid science has thus rapidly expanded, and there is obviously an enormous potential for an application of these new concepts to protein solutions, which has already been realized and harvested in recent years. In this perspective article we make an attempt to critically discuss the exploitation of colloid science concepts to better understand protein solutions. We not only consider classical applications such as the attempt to understand and predict solution stability and phase behaviour, but also discuss new challenges related to the dynamics, flow behaviour and liquid-solid transitions found in concentrated or crowded protein solutions. It not only aims to provide an overview on the progress in experimental and theoretical (bio)colloid science, but also discusses current shortcomings in our ability to correctly reproduce and predict the structural and dynamic properties of protein solutions based on such a colloid approach.
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Affiliation(s)
- Anna Stradner
- Division of Physical Chemistry, Department of Chemistry, Lund University, PO Box 124, SE-221 00 Lund, Sweden.
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33
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Pal A, Martinez VA, Ito TH, Arlt J, Crassous JJ, Poon WCK, Schurtenberger P. Anisotropic dynamics and kinetic arrest of dense colloidal ellipsoids in the presence of an external field studied by differential dynamic microscopy. SCIENCE ADVANCES 2020; 6:eaaw9733. [PMID: 32010765 PMCID: PMC6968932 DOI: 10.1126/sciadv.aaw9733] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2019] [Accepted: 11/20/2019] [Indexed: 05/25/2023]
Abstract
Anisotropic dynamics on the colloidal length scale is ubiquitous in nature. Of particular interest is the dynamics of systems approaching a kinetically arrested state. The failure of classical techniques for investigating the dynamics of highly turbid suspensions has contributed toward the limited experimental information available up until now. Exploiting the recent developments in the technique of differential dynamic microscopy (DDM), we report the first experimental study of the anisotropic collective dynamics of colloidal ellipsoids with a magnetic hematite core over a wide concentration range approaching kinetic arrest. In addition, we have investigated the effect of an external magnetic field on the resulting anisotropic collective diffusion. We combine DDM with small-angle x-ray scattering and rheological measurements to locate the glass transition and to relate the collective short- and long-time diffusion coefficients to the structural correlations and the evolution of the zero shear viscosity as the system approaches an arrested state.
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Affiliation(s)
- Antara Pal
- Division of Physical Chemistry, Department of Chemistry, Lund University, Lund, Sweden
| | - Vincent A. Martinez
- SUPA, School of Physics and Astronomy, The University of Edinburgh, Edinburgh, UK
| | - Thiago H. Ito
- Division of Physical Chemistry, Department of Chemistry, Lund University, Lund, Sweden
| | - Jochen Arlt
- SUPA, School of Physics and Astronomy, The University of Edinburgh, Edinburgh, UK
| | - Jérôme J. Crassous
- Division of Physical Chemistry, Department of Chemistry, Lund University, Lund, Sweden
| | - Wilson C. K. Poon
- SUPA, School of Physics and Astronomy, The University of Edinburgh, Edinburgh, UK
| | - Peter Schurtenberger
- Division of Physical Chemistry, Department of Chemistry, Lund University, Lund, Sweden
- Lund Institute of Advanced Neutron and X-ray Science (LINXS), Lund University, Lund, Sweden
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34
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Brito ME, Denton AR, Nägele G. Modeling deswelling, thermodynamics, structure, and dynamics in ionic microgel suspensions. J Chem Phys 2019; 151:224901. [DOI: 10.1063/1.5129575] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Mariano E. Brito
- Institute of Complex Systems, ICS-3, Forschungszentrum Jülich GmbH, 52425 Jülich, Germany
| | - Alan R. Denton
- Department of Physics, North Dakota State University, Fargo, North Dakota 58108-6050, USA
| | - Gerhard Nägele
- Institute of Complex Systems, ICS-3, Forschungszentrum Jülich GmbH, 52425 Jülich, Germany
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35
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Yoon J, Scheffold F, Ahn KH. Colloidal dynamics and elasticity of dense wax particle suspensions over a wide range of volume fractions when tuning the softness by temperature. Colloids Surf A Physicochem Eng Asp 2019. [DOI: 10.1016/j.colsurfa.2019.04.030] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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36
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Dear BJ, Chowdhury A, Hung JJ, Karouta CA, Ramachandran K, Nieto MP, Wilks LR, Sharma A, Shay TY, Cheung JK, Truskett TM, Johnston KP. Relating Collective Diffusion, Protein–Protein Interactions, and Viscosity of Highly Concentrated Monoclonal Antibodies through Dynamic Light Scattering. Ind Eng Chem Res 2019. [DOI: 10.1021/acs.iecr.9b03432] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Affiliation(s)
- Barton J. Dear
- McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Amjad Chowdhury
- McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Jessica J. Hung
- McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Carl A. Karouta
- McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Kishan Ramachandran
- McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Maria P. Nieto
- McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Logan R. Wilks
- McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Ayush Sharma
- McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Tony Y. Shay
- McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Jason K. Cheung
- Biophysical and Biochemical Characterization, Sterile Formulation Sciences, Merck & Co., Inc., Kenilworth, New Jersey 07033, United States
| | - Thomas M. Truskett
- McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, Texas 78712, United States
- Department of Physics, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Keith P. Johnston
- McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, Texas 78712, United States
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37
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Hung JJ, Zeno WF, Chowdhury AA, Dear BJ, Ramachandran K, Nieto MP, Shay TY, Karouta CA, Hayden CC, Cheung JK, Truskett TM, Stachowiak JC, Johnston KP. Self-diffusion of a highly concentrated monoclonal antibody by fluorescence correlation spectroscopy: insight into protein-protein interactions and self-association. SOFT MATTER 2019; 15:6660-6676. [PMID: 31389467 DOI: 10.1039/c9sm01071h] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
The dynamic behavior of monoclonal antibodies (mAbs) at high concentration provides insight into protein microstructure and protein-protein interactions (PPI) that influence solution viscosity and protein stability. At high concentration, interpretation of the collective-diffusion coefficient Dc, as determined by dynamic light scattering (DLS), is highly challenging given the complex hydrodynamics and PPI at close spacings. In contrast, self-diffusion of a tracer particle by Brownian motion is simpler to understand. Herein, we develop fluorescence correlation spectroscopy (FCS) for the measurement of the long-time self-diffusion of mAb2 over a wide range of concentrations and viscosities in multiple co-solute formulations with varying PPI. The normalized self-diffusion coefficient D0/Ds (equal to the microscopic relative viscosity ηeff/η0) was found to be smaller than η/η0. Smaller ratios of the microscopic to macroscopic viscosity (ηeff/η) are attributed to a combination of weaker PPI and less self-association. The interaction parameters extracted from fits of D0/Ds with a length scale dependent viscosity model agree with previous measurements of PPI by SLS and SAXS. Trends in the degree of self-association, estimated from ηeff/η with a microviscosity model, are consistent with oligomer sizes measured by SLS. Finally, measurements of collective diffusion and osmotic compressibility were combined with FCS data to demonstrate that the changes in self-diffusion between formulations are due primarily to changes in the protein-protein friction in these systems, and not to protein-solvent friction. Thus, FCS is a robust and accessible technique for measuring mAb self-diffusion, and, by extension, microviscosity, PPI and self-association that govern mAb solution dynamics.
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Affiliation(s)
- Jessica J Hung
- McKetta Department of Chemical Engineering, The University of Texas at Austin, 200 E Dean Keeton St Stop C0400, Austin, TX 78712, USA.
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Pamvouxoglou A, Bogri P, Nägele G, Ohno K, Petekidis G. Structure and dynamics in suspensions of soft core-shell colloids in the fluid regime. J Chem Phys 2019; 151:024901. [PMID: 31301719 DOI: 10.1063/1.5091845] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023] Open
Abstract
We report on a detailed experimental study of the structure and short-time dynamics in fluid-regime suspensions of soft core-shell spherical particles with different molecular weights of the chains forming the soft outer shell, and therefore different degrees of particle softness, using 3D dynamic light scattering (3D-DLS). Owing to the particle softness, the liquid-crystal coexistence regime is found to be broader than that of hard-sphere (HS) suspensions. Static light scattering in the dilute regime yields form factors that can be described using a spherical core-shell model and second virial coefficients A2 > 0 indicative of purely repulsive interactions. The particle-particle interactions are longer ranged for all considered systems except those of the smaller molecular weight chain grafted particles which show a HS-like behavior. 3D-DLS experiments in the concentrated regime up to the liquid-crystal transition provide the short-time diffusion function, D(q), in a broad range of scattering wavenumbers, q, from which the structural (cage) and short-time self-diffusion coefficients D(qm) and DS = D(q ≫ qm), respectively, are deduced as functions of the effective particle volume fraction, ϕ = c/c*, where c* is the overlap concentration, calculated using the hydrodynamic particle radius, RH. The size of the nearest-neighbor cage of particles is characterized by 2π/qm, with D(q) and the static structure factor S(q) attaining at qm the smallest and largest values, respectively. Experimental data of D(qm) and DS are contrasted with analytic theoretical predictions based on a simplifying hydrodynamic radius model where the internal hydrodynamic structure of the core-shell particles is mapped on a single hydrodynamic radius parameter γ = RH/Reff, for constant direct interactions characterized by an (effective) hard-core radius Reff. The particle softness is reflected, in particular, in the corresponding shape of the static structure factor, while the mean solvent (Darcy) permeability of the particles related to γ is reflected in the dynamic properties only. For grafted particles with longer polymer chains, D(qm) and DS are indicative of larger permeability values while particles with shorter chains are practically nonpermeable. The particle softness is also evident in the effective random close packing fraction estimated from the extrapolated zero-value limit of the cage diffusion coefficient D(qm).
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Affiliation(s)
- Andreas Pamvouxoglou
- FORTH-IESL and Department of Materials Science and Technology, University of Crete, 71110, Heraklion, Crete, Greece
| | - Panagiota Bogri
- FORTH-IESL and Department of Materials Science and Technology, University of Crete, 71110, Heraklion, Crete, Greece
| | - Gerhard Nägele
- Forschungszentrum Jülich GmbH, ICS-3 - Soft Condensed Matter, 52428 Jülich, Germany
| | - Kohji Ohno
- Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan
| | - George Petekidis
- FORTH-IESL and Department of Materials Science and Technology, University of Crete, 71110, Heraklion, Crete, Greece
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39
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Abstract
AbstractThe dynamics of proteins in solution includes a variety of processes, such as backbone and side-chain fluctuations, interdomain motions, as well as global rotational and translational (i.e. center of mass) diffusion. Since protein dynamics is related to protein function and essential transport processes, a detailed mechanistic understanding and monitoring of protein dynamics in solution is highly desirable. The hierarchical character of protein dynamics requires experimental tools addressing a broad range of time- and length scales. We discuss how different techniques contribute to a comprehensive picture of protein dynamics, and focus in particular on results from neutron spectroscopy. We outline the underlying principles and review available instrumentation as well as related analysis frameworks.
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40
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Skar-Gislinge N, Ronti M, Garting T, Rischel C, Schurtenberger P, Zaccarelli E, Stradner A. A Colloid Approach to Self-Assembling Antibodies. Mol Pharm 2019; 16:2394-2404. [PMID: 31059276 DOI: 10.1021/acs.molpharmaceut.9b00019] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Concentrated solutions of monoclonal antibodies have attracted considerable attention due to their importance in pharmaceutical formulations; yet, their tendency to aggregate and the resulting high viscosity pose considerable problems. Here we tackle this problem by a soft condensed matter physics approach, which combines a variety of experimental measurements with a patchy colloid model, amenable of analytical solution. We thus report results of structural antibodies and dynamic properties obtained through scattering methods and microrheological experiments. We model the data using a colloid-inspired approach, explicitly taking into account both the anisotropic shape of the molecule and its charge distribution. Our simple patchy model is able to disentangle self-assembly and intermolecular interactions and to quantitatively describe the concentration-dependence of the osmotic compressibility, collective diffusion coefficient, and zero shear viscosity. Our results offer new insights on the key problem of antibody formulations, providing a theoretical and experimental framework for a quantitative assessment of the effects of additional excipients or chemical modifications and a prediction of the resulting viscosity.
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Affiliation(s)
- Nicholas Skar-Gislinge
- Physical Chemistry, Department of Chemistry , Lund University , SE-221 00 Lund , Sweden.,Novo Nordisk A/S , DK-2760 Malov , Denmark
| | - Michela Ronti
- Department of Physics , Sapienza Università di Roma , Piazzale Aldo Moro 2 , 00185 Rome , Italy
| | - Tommy Garting
- Physical Chemistry, Department of Chemistry , Lund University , SE-221 00 Lund , Sweden
| | | | - Peter Schurtenberger
- Physical Chemistry, Department of Chemistry , Lund University , SE-221 00 Lund , Sweden.,LINXS - Lund Institute of Advanced Neutron and X-ray Science , Scheelevägen 19 , SE-223 70 Lund , Sweden
| | - Emanuela Zaccarelli
- Institute for Complex Systems, National Research Council (ISC-CNR), Uos Sapienza and Department of Physics , Sapienza Università di Roma , Piazzale Aldo Moro 5 , 00185 Rome , Italy
| | - Anna Stradner
- Physical Chemistry, Department of Chemistry , Lund University , SE-221 00 Lund , Sweden.,LINXS - Lund Institute of Advanced Neutron and X-ray Science , Scheelevägen 19 , SE-223 70 Lund , Sweden
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41
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Nigro V, Angelini R, Rosi B, Bertoldo M, Buratti E, Casciardi S, Sennato S, Ruzicka B. Study of network composition in interpenetrating polymer networks of poly(N isopropylacrylamide) microgels: The role of poly(acrylic acid). J Colloid Interface Sci 2019; 545:210-219. [PMID: 30889412 DOI: 10.1016/j.jcis.2019.03.004] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2018] [Revised: 03/01/2019] [Accepted: 03/02/2019] [Indexed: 12/20/2022]
Abstract
HYPOTHESIS The peculiar swelling behaviour of poly(N-isopropylacrylamide) (PNIPAM)4-based responsive microgels provides the possibility to tune both softness and volume fraction with temperature, making these systems of great interest for technological applications and theoretical implications. Their intriguing phase diagram can be even more complex if poly(acrylic acid) (PAAc)5 is interpenetrated within PNIPAM network to form Interpenetrating Polymer Network (IPN)6 microgels that exhibit an additional pH-sensitivity. The effect of the PAAc/PNIPAM polymeric ratio on both swelling capability and dynamics is still matter of investigation. EXPERIMENTS Here we investigate the role of PAAc in the behaviour of IPN microgels across the volume phase transition through dynamic light scattering (DLS),7 transmission electron microscopy (TEM)8 and electrophoretic measurements as a function of microgel concentration and pH. FINDINGS Our results highlight that aggregation is favored at increasing weight concentration, PAAc content and pH and that a crossover PAAc content CPAAc∗9 exists above which the ionic charges on the microgel become relevant. Moreover we show that the softness of IPN microgels can be tuned ad hoc by changing the PAAc/PNIPAM ratio. These findings provide new insights into the possibility to control experimentally aggregation properties, charge and softness of IPN microgels by varying PAAc content.
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Affiliation(s)
- Valentina Nigro
- Istituto dei Sistemi Complessi del Consiglio Nazionale delle Ricerche (ISC-CNR), sede Sapienza, Pz.le Aldo Moro 5, I-00185 Roma, Italy; Dipartimento di Fisica, Sapienza Università di Roma, P.le Aldo Moro 5, 00185 Roma, Italy.
| | - Roberta Angelini
- Istituto dei Sistemi Complessi del Consiglio Nazionale delle Ricerche (ISC-CNR), sede Sapienza, Pz.le Aldo Moro 5, I-00185 Roma, Italy; Dipartimento di Fisica, Sapienza Università di Roma, P.le Aldo Moro 5, 00185 Roma, Italy.
| | - Benedetta Rosi
- Dipartimento di Fisica, Sapienza Università di Roma, P.le Aldo Moro 5, 00185 Roma, Italy
| | - Monica Bertoldo
- Istituto per i Processi Chimico-Fisici del Consiglio Nazionale delle Ricerche (IPCF-CNR), Area della Ricerca, Via G.Moruzzi 1, I-56124 Pisa, Italy
| | - Elena Buratti
- Istituto per i Processi Chimico-Fisici del Consiglio Nazionale delle Ricerche (IPCF-CNR), Area della Ricerca, Via G.Moruzzi 1, I-56124 Pisa, Italy
| | - Stefano Casciardi
- Department of Occupational and Environmental Medicine, Epidemiology and Hygiene, National Institution for Insurance Against Accidents at Work (INAIL Research), Via Fontana Candida 1, Monte Porzio Catone, 00040 Rome, Italy
| | - Simona Sennato
- Istituto dei Sistemi Complessi del Consiglio Nazionale delle Ricerche (ISC-CNR), sede Sapienza, Pz.le Aldo Moro 5, I-00185 Roma, Italy; Dipartimento di Fisica, Sapienza Università di Roma, P.le Aldo Moro 5, 00185 Roma, Italy
| | - Barbara Ruzicka
- Istituto dei Sistemi Complessi del Consiglio Nazionale delle Ricerche (ISC-CNR), sede Sapienza, Pz.le Aldo Moro 5, I-00185 Roma, Italy; Dipartimento di Fisica, Sapienza Università di Roma, P.le Aldo Moro 5, 00185 Roma, Italy.
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42
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Hung JJ, Dear BJ, Karouta CA, Chowdhury AA, Godfrin PD, Bollinger JA, Nieto MP, Wilks LR, Shay TY, Ramachandran K, Sharma A, Cheung JK, Truskett TM, Johnston KP. Protein-Protein Interactions of Highly Concentrated Monoclonal Antibody Solutions via Static Light Scattering and Influence on the Viscosity. J Phys Chem B 2019; 123:739-755. [PMID: 30614707 DOI: 10.1021/acs.jpcb.8b09527] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The ability to design and formulate mAbs to minimize attractive interactions at high concentrations is important for protein processing, stability, and administration, particularly in subcutaneous delivery, where high viscosities are often challenging. The strength of protein-protein interactions (PPIs) of an IgG1 and IgG4 monoclonal antibody (mAb) from low to high concentration was determined by static light scattering (SLS) and used to understand viscosity data. The PPI were tuned using NaCl and five organic ionic co-solutes. The PPI strength was quantified by the normalized structure factor S(0)/ S(0)HS and Kirkwood-Buff integral G22/ G22,HS (HS = hard sphere) determined from the SLS data and also by fits with (1) a spherical Yukawa potential and (2) an interacting hard sphere (IHS) model, which describes attraction in terms of hypothetical oligomers. The IHS model was better able to capture the scattering behavior of the more strongly interacting systems (mAb and/or co-solute) than the spherical Yukawa potential. For each descriptor of PPI, linear correlations were obtained between the viscosity at high concentration (200 mg/mL) and the interaction strengths evaluated both at low (20 mg/mL) and high concentrations (200 mg/mL) for a given mAb. However, the only parameter that provided a correlation across both mAbs was the oligomer mass ratio ( moligomer/ mmonomer+dimer) from the IHS model, indicating the importance of self-association (in addition to the direct influence of the attractive PPI) on the viscosity.
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Affiliation(s)
- Jessica J Hung
- McKetta Department of Chemical Engineering , The University of Texas at Austin , Austin , Texas 78712 , United States
| | - Barton J Dear
- McKetta Department of Chemical Engineering , The University of Texas at Austin , Austin , Texas 78712 , United States
| | - Carl A Karouta
- McKetta Department of Chemical Engineering , The University of Texas at Austin , Austin , Texas 78712 , United States
| | - Amjad A Chowdhury
- McKetta Department of Chemical Engineering , The University of Texas at Austin , Austin , Texas 78712 , United States
| | - P Douglas Godfrin
- Department of Chemical Engineering , Massachusetts Institute of Technology , Cambridge , Massachusetts 02139 , United States
| | - Jonathan A Bollinger
- McKetta Department of Chemical Engineering , The University of Texas at Austin , Austin , Texas 78712 , United States.,Center for Integrated Nanotechnologies , Sandia National Laboratories , Albuquerque , New Mexico 87185 , United States
| | - Maria P Nieto
- McKetta Department of Chemical Engineering , The University of Texas at Austin , Austin , Texas 78712 , United States
| | - Logan R Wilks
- McKetta Department of Chemical Engineering , The University of Texas at Austin , Austin , Texas 78712 , United States
| | - Tony Y Shay
- McKetta Department of Chemical Engineering , The University of Texas at Austin , Austin , Texas 78712 , United States
| | - Kishan Ramachandran
- McKetta Department of Chemical Engineering , The University of Texas at Austin , Austin , Texas 78712 , United States
| | - Ayush Sharma
- McKetta Department of Chemical Engineering , The University of Texas at Austin , Austin , Texas 78712 , United States
| | - Jason K Cheung
- Pharmaceutical Sciences , MRL, Merck & Co., Inc. , Kenilworth , New Jersey 07033 , United States
| | - Thomas M Truskett
- McKetta Department of Chemical Engineering , The University of Texas at Austin , Austin , Texas 78712 , United States
| | - Keith P Johnston
- McKetta Department of Chemical Engineering , The University of Texas at Austin , Austin , Texas 78712 , United States
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43
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Myung JS, Roosen-Runge F, Winkler RG, Gompper G, Schurtenberger P, Stradner A. Weak Shape Anisotropy Leads to a Nonmonotonic Contribution to Crowding, Impacting Protein Dynamics under Physiologically Relevant Conditions. J Phys Chem B 2018; 122:12396-12402. [PMID: 30499666 PMCID: PMC6349356 DOI: 10.1021/acs.jpcb.8b07901] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
![]()
The effect of a nonspherical
particle shape on the dynamics in
crowded solutions presents a significant challenge for a comprehensive
understanding of interaction and structural relaxation in biological
and soft matter. We report that small deviations from a spherical
shape induce a nonmonotonic contribution to the crowding effect on
the short-time cage diffusion compared with spherical systems, using
molecular dynamics simulations with mesoscale hydrodynamics of a multiparticle
collision dynamics fluid in semidilute systems with volume fractions
smaller than 0.35. We show that the nonmonotonic effect due to anisotropy
is caused by the combination of a reduced relative mobility over the
entire concentration range and a looser and less homogeneous cage
packing of nonspherical particles. Our finding stresses that nonsphericity
induces new complexity, which cannot be accounted for in effective
sphere models, and is of great interest in applications such as formulations
as well as for the fundamental understanding of soft matter in general
and crowding effects in living cells in particular.
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Affiliation(s)
- Jin Suk Myung
- Division of Physical Chemistry, Department of Chemistry , Lund University , SE-221 00 Lund , Sweden
| | - Felix Roosen-Runge
- Division of Physical Chemistry, Department of Chemistry , Lund University , SE-221 00 Lund , Sweden
| | - Roland G Winkler
- Theoretical Soft Matter and Biophysics, Institute of Complex Systems and Institute for Advanced Simulation , Forschungszentrum Jülich , D-52425 Jülich , Germany
| | - Gerhard Gompper
- Theoretical Soft Matter and Biophysics, Institute of Complex Systems and Institute for Advanced Simulation , Forschungszentrum Jülich , D-52425 Jülich , Germany
| | - Peter Schurtenberger
- Division of Physical Chemistry, Department of Chemistry , Lund University , SE-221 00 Lund , Sweden
| | - Anna Stradner
- Division of Physical Chemistry, Department of Chemistry , Lund University , SE-221 00 Lund , Sweden
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44
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Meijer JM, Crassous JJ. Phase Behavior of Bowl-Shaped Colloids: Order and Dynamics in Plastic Crystals and Glasses. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2018; 14:e1802049. [PMID: 30112837 DOI: 10.1002/smll.201802049] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2018] [Revised: 07/04/2018] [Indexed: 06/08/2023]
Abstract
Charged fluorescent bowl-shaped colloids consisting of a polystyrene core surrounded by a poly(N-isopropylmethacrylamide) shell are obtained by nanoengineering spherical composite microgels. The phase diagram of these soft bowl-shaped colloids interacting through long-range Yukawa-type interactions is investigated using confocal laser scanning microscopy. The bowl-shaped structure leads to marked differences in phase-behavior compared to their spherical counterpart. With increasing number density, a transition from a fluid to a plastic crystal phase, with freely rotating particles, followed by a glass-like state is observed. It is found that the anisotropic bowl shape frustrates crystallization and slows down crystallization kinetics and causes the glass-like transition to shift to a significantly lower volume fraction than for the spheres. Quantitative analysis of the positional and orientational order demonstrates that the plastic crystal phase exhibits quasi-long range translational order and orientational disorder, while in the disordered glass-like phase the long-range translational order vanishes and short-range rotational order appears, dictated by the specific bowl shape. It is further shown that the different structural transitions are characterized by decoupling of the translational and orientational dynamics.
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Affiliation(s)
- Janne-Mieke Meijer
- Division of Physical Chemistry, Lund University, Naturvetarvägen 14, ,SE-221 00, Lund, Sweden
- Soft Matter Physics, Universität Konstanz, Universitätstrasse 10, D-78457, Konstanz, Germany
| | - Jérôme J Crassous
- Division of Physical Chemistry, Lund University, Naturvetarvägen 14, ,SE-221 00, Lund, Sweden
- Institute of Physical Chemistry, RWTH Aachen University, Landoltweg 2, 52074, Aachen, Germany
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45
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Beck C, Grimaldo M, Roosen-Runge F, Braun MK, Zhang F, Schreiber F, Seydel T. Nanosecond Tracer Diffusion as a Probe of the Solution Structure and Molecular Mobility of Protein Assemblies: The Case of Ovalbumin. J Phys Chem B 2018; 122:8343-8350. [PMID: 30106587 DOI: 10.1021/acs.jpcb.8b04349] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Protein diffusion is not only an important process ensuring biological function but can also be used as a probe to obtain information on structural properties of protein assemblies in liquid solutions. Here, we explore the oligomerization state of ovalbumin at high protein concentrations by means of its short-time self-diffusion. We employ high-resolution incoherent quasielastic neutron scattering to access the self-diffusion on nanosecond timescales, on which interparticle contacts are not altered. Our results indicate that ovalbumin in aqueous (D2O) solutions occurs in increasingly large assemblies of its monomeric subunits with rising protein concentration. It changes from nearly monomeric toward dimeric and ultimately larger than tetrameric complexes. Simultaneously, we access information on the internal molecular mobility of ovalbumin on the nanometer length scale and compare it with results obtained for bovine serum albumin, immunoglobulin, and β-lactoglobulin.
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Affiliation(s)
- Christian Beck
- Institut Max von Laue-Paul Langevin (ILL) , B.P.156, F-38042 Grenoble , France.,Institut für Angewandte Physik , Universität Tübingen , Auf der Morgenstelle 10 , 72076 Tübingen , Germany
| | - Marco Grimaldo
- Institut Max von Laue-Paul Langevin (ILL) , B.P.156, F-38042 Grenoble , France
| | - Felix Roosen-Runge
- Division of Physical Chemistry, Department of Chemistry , Lund University , Naturvetarvägen 16 , SE-22100 Lund , Sweden
| | - Michal K Braun
- Institut für Angewandte Physik , Universität Tübingen , Auf der Morgenstelle 10 , 72076 Tübingen , Germany
| | - Fajun Zhang
- Institut für Angewandte Physik , Universität Tübingen , Auf der Morgenstelle 10 , 72076 Tübingen , Germany
| | - Frank Schreiber
- Institut für Angewandte Physik , Universität Tübingen , Auf der Morgenstelle 10 , 72076 Tübingen , Germany
| | - Tilo Seydel
- Institut Max von Laue-Paul Langevin (ILL) , B.P.156, F-38042 Grenoble , France
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46
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Yoon J, Cardinaux F, Lapointe C, Zhang C, Mason TG, Ahn KH, Scheffold F. Brownian dynamics of colloidal microspheres with tunable elastic properties from soft to hard. Colloids Surf A Physicochem Eng Asp 2018. [DOI: 10.1016/j.colsurfa.2018.02.046] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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47
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Ciepluch K, Radulescu A, Hoffmann I, Raba A, Allgaier J, Richter D, Biehl R. Influence of PEGylation on Domain Dynamics of Phosphoglycerate Kinase: PEG Acts Like Entropic Spring for the Protein. Bioconjug Chem 2018; 29:1950-1960. [DOI: 10.1021/acs.bioconjchem.8b00203] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Affiliation(s)
- Karol Ciepluch
- Jülich Centre for Neutron Science & Institute of Complex Systems (JCNS-1&ICS-1), Forschungszentrum Jülich, 52425 Jülich, Germany
| | - Aurel Radulescu
- Jülich Centre for Neutron Science JCNS at Heinz Maier-Leibnitz Zentrum (MLZ), Forschungszentrum Jülich, 85748 Garching, Germany
| | - Ingo Hoffmann
- Institute Laue-Langevin (ILL), 71 rue des Martyrs, 38042 Grenoble, Cedex 9, France
| | - Andreas Raba
- Jülich Centre for Neutron Science & Institute of Complex Systems (JCNS-1&ICS-1), Forschungszentrum Jülich, 52425 Jülich, Germany
| | - Jürgen Allgaier
- Jülich Centre for Neutron Science & Institute of Complex Systems (JCNS-1&ICS-1), Forschungszentrum Jülich, 52425 Jülich, Germany
| | - Dieter Richter
- Jülich Centre for Neutron Science & Institute of Complex Systems (JCNS-1&ICS-1), Forschungszentrum Jülich, 52425 Jülich, Germany
| | - Ralf Biehl
- Jülich Centre for Neutron Science & Institute of Complex Systems (JCNS-1&ICS-1), Forschungszentrum Jülich, 52425 Jülich, Germany
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48
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Banchio AJ, Heinen M, Holmqvist P, Nägele G. Short- and long-time diffusion and dynamic scaling in suspensions of charged colloidal particles. J Chem Phys 2018; 148:134902. [PMID: 29626910 DOI: 10.1063/1.5017969] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We report on a comprehensive theory-simulation-experimental study of collective and self-diffusion in concentrated suspensions of charge-stabilized colloidal spheres. In theory and simulation, the spheres are assumed to interact directly by a hard-core plus screened Coulomb effective pair potential. The intermediate scattering function, fc(q, t), is calculated by elaborate accelerated Stokesian dynamics (ASD) simulations for Brownian systems where many-particle hydrodynamic interactions (HIs) are fully accounted for, using a novel extrapolation scheme to a macroscopically large system size valid for all correlation times. The study spans the correlation time range from the colloidal short-time to the long-time regime. Additionally, Brownian Dynamics (BD) simulation and mode-coupling theory (MCT) results of fc(q, t) are generated where HIs are neglected. Using these results, the influence of HIs on collective and self-diffusion and the accuracy of the MCT method are quantified. It is shown that HIs enhance collective and self-diffusion at intermediate and long times. At short times self-diffusion, and for wavenumbers outside the structure factor peak region also collective diffusion, are slowed down by HIs. MCT significantly overestimates the slowing influence of dynamic particle caging. The dynamic scattering functions obtained in the ASD simulations are in overall good agreement with our dynamic light scattering (DLS) results for a concentration series of charged silica spheres in an organic solvent mixture, in the experimental time window and wavenumber range. From the simulation data for the time derivative of the width function associated with fc(q, t), there is indication of long-time exponential decay of fc(q, t), for wavenumbers around the location of the static structure factor principal peak. The experimental scattering functions in the probed time range are consistent with a time-wavenumber factorization scaling behavior of fc(q, t) that was first reported by Segrè and Pusey [Phys. Rev. Lett. 77, 771 (1996)] for suspensions of hard spheres. Our BD simulation and MCT results predict a significant violation of exact factorization scaling which, however, is approximately restored according to the ASD results when HIs are accounted for, consistent with the experimental findings for fc(q, t). Our study of collective diffusion is amended by simulation and theoretical results for the self-intermediate scattering function, fs(q, t), and its non-Gaussian parameter α2(t) and for the particle mean squared displacement W(t) and its time derivative. Since self-diffusion properties are not assessed in standard DLS measurements, a method to deduce W(t) approximately from fc(q, t) is theoretically validated.
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Affiliation(s)
- Adolfo J Banchio
- Universidad Nacional de Córdoba, Facultad de Matemática, Astronomía, Física y Computación, Córdoba, Argentina
| | - Marco Heinen
- División de Ciencias e Ingenierías, Universidad de Guanajuato, 37150 León, Guanajuato, Mexico
| | - Peter Holmqvist
- Division of Physical Chemistry, Lund University, Lund SE-221 00, Sweden
| | - Gerhard Nägele
- Institut für Theoretische Physik II, Weiche Materie, Heinrich-Heine-Universität Düsseldorf, D-40225 Düsseldorf, Germany
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49
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Riest J, Nägele G, Liu Y, Wagner NJ, Godfrin PD. Short-time dynamics of lysozyme solutions with competing short-range attraction and long-range repulsion: Experiment and theory. J Chem Phys 2018; 148:065101. [DOI: 10.1063/1.5016517] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
Affiliation(s)
- Jonas Riest
- Forschungszentrum Jülich GmbH, ICS-3–Soft Condensed Matter, 52428 Jülich, Germany and Jülich-Aachen Research Alliance JARA–Soft Matter, 52425 Jülich, Germany
| | - Gerhard Nägele
- Forschungszentrum Jülich GmbH, ICS-3–Soft Condensed Matter, 52428 Jülich, Germany and Jülich-Aachen Research Alliance JARA–Soft Matter, 52425 Jülich, Germany
| | - Yun Liu
- Center for Neutron Research, National Institute of Standards and Technology, Gaithersburg, Maryland 20899, USA and Department of Chemical and Biomolecular Engineering, University of Delaware, Newark, Delaware 19716, USA
| | - Norman J. Wagner
- Center for Neutron Science, Department of Chemical and Biomolecular Engineering, University of Delaware, Newark, Delaware 19716, USA
| | - P. Douglas Godfrin
- Center for Neutron Science, Department of Chemical and Biomolecular Engineering, University of Delaware, Newark, Delaware 19716, USA
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
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50
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Vodnala P, Karunaratne N, Lurio L, Thurston GM, Vega M, Gaillard E, Narayanan S, Sandy A, Zhang Q, Dufresne EM, Foffi G, Grybos P, Kmon P, Maj P, Szczygiel R. Hard-sphere-like dynamics in highly concentrated alpha-crystallin suspensions. Phys Rev E 2018; 97:020601. [PMID: 29548072 DOI: 10.1103/physreve.97.020601] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2017] [Indexed: 06/08/2023]
Abstract
The dynamics of concentrated suspensions of the eye-lens protein alpha crystallin have been measured using x-ray photon correlation spectroscopy. Measurements were made at wave vectors corresponding to the first peak in the hard-sphere structure factor and volume fractions close to the critical volume fraction for the glass transition. Langevin dynamics simulations were also performed in parallel to the experiments. The intermediate scattering function f(q,τ) could be fit using a stretched exponential decay for both experiments and numerical simulations. The measured relaxation times show good agreement with simulations for polydisperse hard-sphere colloids.
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Affiliation(s)
- Preeti Vodnala
- Department of Physics, Northern Illinois University, DeKalb, Illinois 60115, USA
| | - Nuwan Karunaratne
- Department of Physics, Northern Illinois University, DeKalb, Illinois 60115, USA
| | - Laurence Lurio
- Department of Physics, Northern Illinois University, DeKalb, Illinois 60115, USA
| | - George M Thurston
- School of Physics and Astronomy, Rochester Institute of Technology, Rochester, New York 14623, USA
| | - Michael Vega
- Department of Chemistry and Biochemistry, Northern Illinois University, DeKalb, Illinois 60115, USA
| | - Elizabeth Gaillard
- Department of Chemistry and Biochemistry, Northern Illinois University, DeKalb, Illinois 60115, USA
| | - Suresh Narayanan
- X-ray Science Division, Argonne National Laboratory, Lemont, Illinois 60439, USA
| | - Alec Sandy
- X-ray Science Division, Argonne National Laboratory, Lemont, Illinois 60439, USA
| | - Qingteng Zhang
- X-ray Science Division, Argonne National Laboratory, Lemont, Illinois 60439, USA
| | - Eric M Dufresne
- X-ray Science Division, Argonne National Laboratory, Lemont, Illinois 60439, USA
| | - Giuseppe Foffi
- Laboratoire de Physique des Solides, Université Paris-Saclay, CNRS, Université Paris-Sud, UMR 8502, 91405 Orsay, France
| | - Pawel Grybos
- AGH University of Science and Technology, av. Mickiewicza 30, Krakow 30-059, Poland
| | - Piotr Kmon
- AGH University of Science and Technology, av. Mickiewicza 30, Krakow 30-059, Poland
| | - Piotr Maj
- AGH University of Science and Technology, av. Mickiewicza 30, Krakow 30-059, Poland
| | - Robert Szczygiel
- AGH University of Science and Technology, av. Mickiewicza 30, Krakow 30-059, Poland
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