Transient infrared spectra of CH3SOO and CH3SO observed with a step-scan Fourier-transform spectrometer

Fluoromethylsulfinyl radicals: spectroscopic characterization and photoisomerization via intramolecular hydrogen shift

Two new sulfinyl radicals, CHF₂SO˙ and CH₂FSO˙, have been generated in the gas phase through homolytic cleavage of the weak S-S bonds in disulfane oxides CHF₂S(O)SCF₃ and CH₂FS(O)SCF₃ by high-vacuum flash pyrolysis (HVFP) at ca. 500 °C. The IR spectroscopy characterization of the two fluoromethylsulfinyl radicals in solid N₂ (10 K), Ar (10 K), and Ne (3 K) matrices reveals the presence of two conformers for CHF₂SO˙ (gauche and cis) and one conformer for CH₂FSO˙ (gauche). Upon 266 nm laser irradiation, these radicals undergo both isomerization and decomposition in the matrices. In addition to the dominant formation of the elusive oxathiyl radicals CHF₂OS˙ (gauche and cis) and CH₂FOS˙ (gauche) via 1,2-alkyl migration, two higher-energy carbon-centered radicals ˙CF₂SOH and ˙CHFSOH bearing similar molecular structures to hydroperoxyalkyl radicals (˙QOOH) form via intramolecular 1,3-hydrogen shift in the two sulfinyl radicals. Additionally, the involvement of 1,3-hydrogen shift in CHF₂OS˙ and CH₂FOS˙ is also indicated by the observation of the fragmentation species. The identification of these radicals by matrix-isolation IR and UV-vis spectroscopy is aided by the quantum chemical calculations at the B3LYP/6-311++G(3df,3pd) level of theory. The stability of the isomers of the two sulfinyl radicals CHF₂SO˙ and CH₂FSO˙ has been discussed according to the experimental observations and also based on the CCSD(T)-F12a/aug-cc-pVTZ//B3LYP/6-311++G(3df,3pd) calculated energy profiles.

Spectroscopic characterization of two peroxyl radicals during the O2-oxidation of the methylthio radical

The atmospheric oxidation of dimethyl sulfide (DMS) yields sulfuric acid and methane sulfonic acid (MSA), which are key precursors to new particles formed via homogeneous nucleation and further cluster growth in air masses. Comprehensive experimental and theoretical studies have suggested that the oxidation of DMS involves the formation of the methylthio radical (CH₃S•), followed by its O₂-oxidation reaction via the intermediacy of free radicals CH₃SO_x• (x = 1-4). Therefore, capturing these transient radicals and disclosing their reactivity are of vital importance in understanding the complex mechanism. Here, we report an optimized method for efficient gas-phase generation of CH₃S• through flash pyrolysis of S-nitrosothiol CH₃SNO, enabling us to study the O₂-oxidation of CH₃S• by combining matrix-isolation spectroscopy (IR and UV-vis) with quantum chemical computations at the CCSD(T)/aug-cc-pV(X + d)Z (X = D and T) level of theory. As the key intermediate for the initial oxidation of CH₃S•, the peroxyl radical CH₃SOO• forms by reacting with O₂. Upon irradiation at 830 nm, CH₃SOO• undergoes isomerization to the sulfonyl radical CH₃SO₂• in cryogenic matrixes (Ar, Ne, and N₂), and the latter can further combine with O₂ to yield another peroxyl radical CH₃S(O)₂OO• upon further irradiation at 440 nm. Subsequent UV-light irradiation (266 nm) causes dissociation of CH₃S(O)₂OO• to CH₃SO₂•, CH₂O, SO₂, and SO₃. The IR spectroscopic identification of the two peroxyl radicals CH₃SOO• and CH₃S(O)₂OO• is also supported by ¹⁸O- and ¹³C-isotope labeling experiments.

Thioguanine restoration through type I photosensitization-superoxide oxidation-glutathione reduction cycles

UVA-induced deleterious effect of thiopurine prodrugs including azathioprine, 6-mercaptopurine and 6-thioguanine (6-TG) increases the risk of cancer development due to the incorporation of 6-TG in patients' DNA. The catalytic mechanism by which thiobases act as a sustained oxidant producer has yet to be explored, especially through the Type I electron transfer pathway that produces superoxide radicals (O2˙-). Under Fenton-like conditions O2˙- radicals convert to extremely reactive hydroxyl radicals (˙OH), thus carrying even higher risk of biological damage than that induced by the well-studied type II reaction. By monitoring 6-TG/UVA-induced photochemistry in mass spectra and superoxide radicals (O2˙-) via nitro blue tetrazolium (NBT) reduction, this work provides two new findings: (1) in the presence of reduced glutathione (GSH), the production of O2˙-via the type I reaction is enhanced 10-fold. 6-TG thiyl radicals are identified as the primary intermediate formed in the reaction of 6-TG with O2˙-. The restoration of 6-TG and concurrent generation of O2˙- occur via a 3-step-cycle: 6-TG type I photosensitization, O2˙- oxidation and GSH reduction. (2) In the absence of GSH, 6-TG thiyl radicals undergo oxygen addition and sulfur dioxide removal to form carbon radicals (C6) which further convert to thioether by reacting with 6-TG molecules. These findings help explain not only thiol-regulation in a biological system but chemoprevention of cancer.

Capture and Reactivity of an Elusive Carbon-Sulfur Centered Biradical

The initial oxidation product of dimethyl sulfide in the marine boundary layer, the methyl thiomethyl radical, has remained elusive. A structurally analogous biradical with one radical center in the α-position to a sulfur atom could now be obtained by UV irradiation of p-nitrobenzaldehyde dithiane isolated in solid dinitrogen (N₂) or Ar at cryogenic temperatures. A spin-forbidden reaction with triplet dioxygen (³O₂) does not occur. The dithiane of o-nitrobenzaldehyde rather undergoes a series of rearrangements under the same conditions, resulting in overall photodeprotection.

Caged Nitric Oxide-Thiyl Radical Pairs

S-Nitrosothiols (RSNO) are exogenous and endogenous sources of nitric oxide in biological systems due to facile homolytic cleavage of the S-N bonds. By following the photolytic decomposition of prototypical RSNO (R = Me and Et) in Ne, Ar, and N₂ matrixes (<10 K), elusive caged radical pairs consisting of nitric oxide (NO•) and thiyl radicals (RS•), bridged by O···S and H···N connections, were identified with IR and UV/vis spectroscopy. Upon red-light irradiation, both caged radical pairs (RS•···•ON) vanish and reform RSNO. According to the calculation at the CASPT2(10,8)/cc-pVDZ level (298.15 K), the dissociation energy of MeS•···•ON amounts to 4.7 kcal mol^-1.

Atmospherically Relevant Radicals Derived from the Oxidation of Dimethyl Sulfide

The large number and amounts of volatile organosulfur compounds emitted to the atmosphere and the enormous variety of their reactions in various oxidation states make experimental measurements of even a small fraction of them a daunting task. Dimethyl sulfide (DMS) is a product of biological processes involving marine phytoplankton, and it is estimated to account for approximately 60% of the total natural sulfur gases released to the atmosphere. Ocean-emitted DMS has been suggested to play a role in atmospheric aerosol formation and thereby cloud formation. The reaction of ·OH with DMS is known to proceed by two independent channels: abstraction and addition. The oxidation of DMS is believed to be initiated by the reaction with ·OH and NO₃· radicals, which eventually leads to the formation of sulfuric acid (H₂SO₄) and methanesulfonic acid (CH₃SO₃H). The reaction of DMS with NO₃· appears to proceed exclusively by hydrogen abstraction. The oxidation of DMS consists of a complex sequence of reactions. Depending on the time of the day or altitude, it may take a variety of pathways. In general, however, the oxidation proceeds via chains of radical reactions. Dimethyl sulfoxide (DMSO) has been reported to be a major product of the addition channel. Dimethyl sulfone (DMSO₂), SO₂, CH₃SO₃H, and methanesulfinic acid (CH₃S(O)OH) have been observed as products of further oxidation of DMSO. Understanding the details of DMS oxidation requires in-depth knowledge of the elementary steps of this seemingly simple transformation, which in turn requires a combination of experimental and theoretical methods. The methylthiyl (CH₃S·), methylsulfinyl (CH₃SO·), methylsulfonyl (CH₃SO₂·), and methylsulfonyloxyl (CH₃SO₃·) radicals have been postulated as intermediates in the oxidation of DMS. Therefore, studying the chemistry of sulfur-containing free radicals in the laboratory also is the basis for understanding the mechanism of DMS oxidation in the atmosphere. The application of matrix-isolation techniques in combination with quantum-mechanical calculations on the generation and structural elucidation of CH₃SO_x (x = 0-3) radicals is reviewed in the present Account. Experimental matrix IR and UV/vis data for all known species of this substance class are summarized together with data obtained using other spectroscopic techniques, including time-resolved spectroscopy, electron paramagnetic resonance spectroscopy, and others. We also discuss the reactivity and experimental characterization of these species to illustrate their practical relevance and highlight spectroscopic techniques available for the elucidation of their geometric and electronic structures. The present Account summarizes recent results regarding the preparation, characterization, and reactivity of various radical species with the formula CH₃SO_x (x = 0-3).

The methylsulfinyl radical CH3SO examined

Our computational investigations broaden the scope of currently available experimental results on the methylsulfinyl radical, a key atmospheric species.

Determination of the photolysis rate coefficient of monochlorodimethyl sulfide (MClDMS) in the atmosphere and its implications for the enhancement of SO2 production from the DMS + Cl2 reaction

In this work, the photolysis rate coefficient of CH3SCH2Cl (MClDMS) in the lower atmosphere has been determined and has been used in a marine boundary layer (MBL) box model to determine the enhancement of SO2 production arising from the reaction DMS + Cl2. Absorption cross sections measured in the 28000-34000 cm(-1) region have been used to determine photolysis rate coefficients of MClDMS in the troposphere at 10 solar zenith angles (SZAs). These have been used to determine the lifetimes of MClDMS in the troposphere. At 0° SZA, a photolysis lifetime of 3-4 h has been obtained. The results show that the photolysis lifetime of MClDMS is significantly smaller than the lifetimes with respect to reaction with OH (≈ 4.6 days) and with Cl atoms (≈ 1.2 days). It has also been shown, using experimentally derived dissociation energies with supporting quantum-chemical calculations, that the dominant photodissocation route of MClDMS is dissociation of the C-S bond to give CH3S and CH2Cl. MBL box modeling calculations show that buildup of MClDMS at night from the Cl2 + DMS reaction leads to enhanced SO2 production during the day. The extra SO2 arises from photolysis of MClDMS to give CH3S and CH2Cl, followed by subsequent oxidation of CH3S.

Infrared absorption of gaseous benzoyl radical C6H5CO recorded with a step-scan Fourier-transform spectrometer

A step-scan Fourier-transform infrared spectrometer coupled with a multipass absorption cell was utilized to monitor the gaseous transient species benzoyl radical, C(6)H(5)CO. C(6)H(5)CO was produced either from photolysis of acetophenone, C(6)H(5)C(O)CH(3), at 248 nm or in reactions of phenyl radical (C(6)H(5)) with CO; C(6)H(5) was produced on photolysis of C(6)H(5)Br at 248 nm. One intense band at 1838 ± 1 cm(-1), one weak band at 1131 ± 3 cm(-1), and two extremely weak bands at 1438 ± 5 and 1590 ± 10 cm(-1) are assigned to the C═O stretching (ν(6)), the C-C stretching mixed with C-H deformation (ν(15)), the out-of-phase C(1)C(2)C(3)/C(5)C(6)C(1) symmetric stretching (ν(10)), and the in-phase C(1)C(2)C(3)/C(4)C(5)C(6) antisymmetric stretching (ν(7)) modes of C(6)H(5)CO, respectively. These observed vibrational wavenumbers and relative IR intensities agree with those reported for C(6)H(5)CO isolated in solid Ar and with values predicted for C(6)H(5)CO with the B3LYP/aug-cc-pVDZ method. The rotational contours of the two bands near 1838 and 1131 cm(-1) simulated according to rotational parameters predicted with the B3LYP/aug-cc-pVDZ method fit satisfactorily with the experimental results. Additional products BrCO, C(6)H(5)C(O)Br, and C(6)H(5)C(O)C(6)H(5) were identified in the C(6)H(5)Br/CO/N(2) experiments; the kinetics involving C(6)H(5)CO and C(6)H(5)C(O)Br are discussed.