1
|
Kumar R, Ghosh A, Vaval N. Relaxation of the 2a1 ionized water dimer: An interplay of intermolecular Coulombic decay (ICD) and proton transfer processes. J Chem Phys 2024; 160:214302. [PMID: 38832734 DOI: 10.1063/5.0199888] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2024] [Accepted: 05/16/2024] [Indexed: 06/05/2024] Open
Abstract
This article investigates the relaxation dynamics of the ionized 2a1 state of a water molecule within a water dimer. The study was motivated by findings from two previous pieces of research that focused on the relaxation behaviors of the inner-valence ionized water dimer. The present study discloses an observation indicating that water dimers display specific fragmentation patterns following inner-valence ionization, depending on the position of the vacancy. Vacancies were created in the 2a1 state of the proton-donating water molecule (PDWM) and proton-accepting water molecule (PAWM). Utilizing Born-Oppenheimer molecular dynamics simulations, the propagation of the 2a1 ionized state was carried out for both scenarios. The results revealed proton transfer occurred when the vacancy resided in the PDWM, accompanied by the closing of decay channels for O-H bond distance (RO-H) > 1.187 Å (matching Richter et al.'s findings). Conversely, when vacancy was on PAWM, we observed no closing of decay channels (aligning with Jahnke et al.'s findings). This difference translates to distinct fragmentation pathways. In PDWM cases, 2a1 state ionization leads to H3O+ -OH• formation. In contrast, PAWM vacancies result in decay pathways leading to H2O+-H2O+ products.
Collapse
Affiliation(s)
- Ravi Kumar
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Aryya Ghosh
- Department of Chemistry, Ashoka University, Sonipat, Haryana 131029, India
| | - Nayana Vaval
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| |
Collapse
|
2
|
Fárníková K, Pluhařová E, Pysanenko A, Fárník M, Yan Y, Lengyel J. Dynamics of collisions and uptake of alcohol molecules with hydrated nitric acid clusters. Faraday Discuss 2024. [PMID: 38758164 DOI: 10.1039/d3fd00160a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/18/2024]
Abstract
We investigate the collisions of different alcohol molecules with hydrated nitric acid clusters using a molecular beam experiment and molecular dynamics simulations. The uptake cross sections σp for the molecules evaluated from the experiment are in excellent agreement with the simulations. This suggests that (i) the nontrivial assumptions implemented in the evaluation procedure of the experimental data are valid, and (ii) the simulations describe correctly the major processes in the molecule-cluster collisions. We observe that σp decreases with the increasing alkyl chain length of the alcohol, and also with the branching of the molecules that have the same mass but different structures. These systematic trends can be rationalized based on the accessibility of the hydrophilic OH group, which decreases with the increasing chain length and steric hindrance. The observed trends and their interpretation differ significantly from the simple model of hard-sphere collisions. The obtained data shall be beneficial not only for the fundamental understanding of the molecule-cluster collisions, but also in the modelling of atmospheric new-particle formation and aerosol growth.
Collapse
Affiliation(s)
- Karolína Fárníková
- J. Heyrovský Institute of Physical Chemistry, v.v.i., Czech Academy of Sciences, Dolejškova 2155/3, 18223 Prague 8, Czech Republic.
| | - Eva Pluhařová
- J. Heyrovský Institute of Physical Chemistry, v.v.i., Czech Academy of Sciences, Dolejškova 2155/3, 18223 Prague 8, Czech Republic.
| | - Andrij Pysanenko
- J. Heyrovský Institute of Physical Chemistry, v.v.i., Czech Academy of Sciences, Dolejškova 2155/3, 18223 Prague 8, Czech Republic.
| | - Michal Fárník
- J. Heyrovský Institute of Physical Chemistry, v.v.i., Czech Academy of Sciences, Dolejškova 2155/3, 18223 Prague 8, Czech Republic.
| | - Yihui Yan
- Lehrstuhl für Physikalische Chemie, TUM School of Natural Sciences, Technische Universität München, Lichtenbergstraße 4, 85748 Garching, Germany.
| | - Jozef Lengyel
- Lehrstuhl für Physikalische Chemie, TUM School of Natural Sciences, Technische Universität München, Lichtenbergstraße 4, 85748 Garching, Germany.
| |
Collapse
|
3
|
Neupane P, Bartels DM, Thompson WH. Exploring the Unusual Reactivity of the Hydrated Electron with CO 2. J Phys Chem B 2024; 128:567-575. [PMID: 38184793 DOI: 10.1021/acs.jpcb.3c06935] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2024]
Abstract
Many questions remain about the reactions of the hydrated electron despite decades of study. Of particular note is that they do not appear to follow the Marcus theory of electron transfer reactions, a feature that is yet to be explained. To investigate these issues, we used ab initio molecular dynamics (AIMD) simulations to investigate one of the better studied reactions, the hydrated electron reduction of CO2. The rate constant for the hydrated electron-CO2 reaction complex to react to form CO2- is for the first time estimated from AIMD simulations. Results at 298 and 373 K show the rate constant is insensitive to temperature, consistent with the low measured activation energy for the reaction, and the implications of this behavior are examined. The sampling provided by the simulations yields insight into the reaction mechanism. The reaction is found to involve both solvent reorganization and changes in the carbon dioxide structure. The latter leads to significant vibrational excitation of the bending and symmetric stretch vibrations in the CO2- product, indicating the reaction is vibrationally nonadiabatic. The former is estimated from the calculation of an approximate collective solvent coordinate and the free energy in this coordinate is determined. These results indicate that AIMD simulations can reasonably estimate hydrated electron reaction activation energies and provide new insight into the mechanism that can help illuminate the features of this unusual chemistry.
Collapse
Affiliation(s)
- Pauf Neupane
- Department of Chemistry, University of Kansas, Lawrence, Kansas 66045, United States
| | - David M Bartels
- Radiation Laboratory, University of Notre Dame, Notre Dame, Indiana 46556, United States
| | - Ward H Thompson
- Department of Chemistry, University of Kansas, Lawrence, Kansas 66045, United States
| |
Collapse
|
4
|
Iguchi A, Singh A, Bergmeister S, Azhagesan AA, Mizuse K, Fujii A, Tanuma H, Azuma T, Scheier P, Kuma S, Vilesov AF. Isolation and Infrared Spectroscopic Characterization of Hemibonded Water Dimer Cation in Superfluid Helium Nanodroplets. J Phys Chem Lett 2023; 14:8199-8204. [PMID: 37672355 PMCID: PMC10510431 DOI: 10.1021/acs.jpclett.3c02150] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Accepted: 08/30/2023] [Indexed: 09/08/2023]
Abstract
The structure of the minimum unit of the radical cationic water clusters, the (H2O)2+ dimer, has attracted much attention because of its importance for the radiation chemistry of water. Previous spectroscopic studies indicated that the dimers have a proton-transferred structure (H3O+·OH), though the alternate metastable hemibonded structure (H2O·OH2)+ was also predicted based on theoretical calculations. Here, we produce (H2O)2+ dimers in superfluid helium nanodroplets and study their infrared spectra in the range of OH stretching vibrations. The observed spectra indicate the coexistence of the two structures in the droplets, supported by density functional theory calculations. This is the first spectroscopic identification of the hemibonded isomer of water radical cation dimers. The observation of the higher-energy isomer reveals efficient kinetic trapping for metastable ionic clusters due to the rapid cooling in helium droplets.
Collapse
Affiliation(s)
- Arisa Iguchi
- Department
of Physics, Tokyo Metropolitan University, Tokyo 192-0397, Japan
- Atomic,
Molecular, and Optical Physics Laboratory, RIKEN, Saitama 351-0198, Japan
| | - Amandeep Singh
- Department
of Chemistry, University of Southern California, Los Angeles, California 90089, United States
| | - Stefan Bergmeister
- Institut
für Ionenphysik und Angewandte Physik, Universität Innsbruck, A-6020 Innsbruck, Austria
| | - Andrew A. Azhagesan
- Department
of Computer Science, University of Southern
California, Los Angeles, California 90089, United States
| | - Kenta Mizuse
- Department
of Chemistry, School of Science, Kitasato
University, Sagamihara, Kanagawa 252-0373, Japan
| | - Asuka Fujii
- Department
of Chemistry, Graduate School of Science, Tohoku University, Sendai 980-8578, Japan
| | - Hajime Tanuma
- Department
of Physics, Tokyo Metropolitan University, Tokyo 192-0397, Japan
| | - Toshiyuki Azuma
- Atomic,
Molecular, and Optical Physics Laboratory, RIKEN, Saitama 351-0198, Japan
| | - Paul Scheier
- Institut
für Ionenphysik und Angewandte Physik, Universität Innsbruck, A-6020 Innsbruck, Austria
| | - Susumu Kuma
- Atomic,
Molecular, and Optical Physics Laboratory, RIKEN, Saitama 351-0198, Japan
| | - Andrey F. Vilesov
- Department
of Chemistry, University of Southern California, Los Angeles, California 90089, United States
| |
Collapse
|
5
|
Neupane P, Bartels DM, Thompson WH. Empirically Optimized One-Electron Pseudopotential for the Hydrated Electron: A Proof-of-Concept Study. J Phys Chem B 2023; 127:7361-7371. [PMID: 37556737 DOI: 10.1021/acs.jpcb.3c03540] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/11/2023]
Abstract
Mixed quantum-classical molecular dynamics simulations have been important tools for studying the hydrated electron. They generally use a one-electron pseudopotential to describe the interactions of an electron with the water molecules. This approximation shows both the strength and weakness of the approach. On the one hand, it enables extensive statistical sampling and large system sizes that are not possible with more accurate ab initio molecular dynamics methods. On the other hand, there has (justifiably) been much debate about the ability of pseudopotentials to accurately and quantitatively describe the hydrated electron properties. These pseudopotentials have largely been derived by fitting them to ab initio calculations of an electron interacting with a single water molecule. In this paper, we present a proof-of-concept demonstration of an alternative approach in which the pseudopotential parameters are determined by optimizing them to reproduce key experimental properties. Specifically, we develop a new pseudopotential, using the existing TBOpt model as a starting point, which correctly describes the hydrated electron vertical detachment energy and radius of gyration. In addition to these properties, this empirically optimized model displays a significantly modified solvation structure, which improves, for example, the prediction of the partial molar volume.
Collapse
Affiliation(s)
- Pauf Neupane
- Department of Chemistry, University of Kansas, Lawrence, Kansas 66045, United States
| | - David M Bartels
- Radiation Laboratory, University of Notre Dame, Notre Dame, Indiana 46556, United States
| | - Ward H Thompson
- Department of Chemistry, University of Kansas, Lawrence, Kansas 66045, United States
| |
Collapse
|
6
|
Schnorr K, Belina M, Augustin S, Lindenblatt H, Liu Y, Meister S, Pfeifer T, Schmid G, Treusch R, Trost F, Slavíˇek P, Moshammer R. Direct tracking of ultrafast proton transfer in water dimers. SCIENCE ADVANCES 2023; 9:eadg7864. [PMID: 37436977 PMCID: PMC10337913 DOI: 10.1126/sciadv.adg7864] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2023] [Accepted: 06/08/2023] [Indexed: 07/14/2023]
Abstract
Upon ionization, water forms a highly acidic radical cation H2O+· that undergoes ultrafast proton transfer (PT)-a pivotal step in water radiation chemistry, initiating the production of reactive H3O+, OH[Formula: see text] radicals, and a (hydrated) electron. Until recently, the time scales, mechanisms, and state-dependent reactivity of ultrafast PT could not be directly traced. Here, we investigate PT in water dimers using time-resolved ion coincidence spectroscopy applying a free-electron laser. An extreme ultraviolet (XUV) pump photon initiates PT, and only dimers that have undergone PT at the instance of the ionizing XUV probe photon result in distinct H3O+ + OH+ pairs. By tracking the delay-dependent yield and kinetic energy release of these ion pairs, we measure a PT time of (55 ± 20) femtoseconds and image the geometrical rearrangement of the dimer cations during and after PT. Our direct measurement shows good agreement with nonadiabatic dynamics simulations for the initial PT and allows us to benchmark nonadiabatic theory.
Collapse
Affiliation(s)
- Kirsten Schnorr
- Max Planck Institute for Nuclear Physics, Saupfercheckweg 1, 69117 Heidelberg, Germany
- Paul Scherrer Institut, Forschungsstrasse 111, 5232 Villigen, Switzerland
| | - Michal Belina
- Department of Physical Chemistry, University of Chemistry and Technology, Technická 5, 16628 Prague 6, Czech Republic
| | - Sven Augustin
- Max Planck Institute for Nuclear Physics, Saupfercheckweg 1, 69117 Heidelberg, Germany
- Paul Scherrer Institut, Forschungsstrasse 111, 5232 Villigen, Switzerland
| | - Hannes Lindenblatt
- Max Planck Institute for Nuclear Physics, Saupfercheckweg 1, 69117 Heidelberg, Germany
| | - Yifan Liu
- Max Planck Institute for Nuclear Physics, Saupfercheckweg 1, 69117 Heidelberg, Germany
| | - Severin Meister
- Max Planck Institute for Nuclear Physics, Saupfercheckweg 1, 69117 Heidelberg, Germany
| | - Thomas Pfeifer
- Max Planck Institute for Nuclear Physics, Saupfercheckweg 1, 69117 Heidelberg, Germany
| | - Georg Schmid
- Max Planck Institute for Nuclear Physics, Saupfercheckweg 1, 69117 Heidelberg, Germany
| | - Rolf Treusch
- Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany
| | - Florian Trost
- Max Planck Institute for Nuclear Physics, Saupfercheckweg 1, 69117 Heidelberg, Germany
| | - Petr Slavíˇek
- Department of Physical Chemistry, University of Chemistry and Technology, Technická 5, 16628 Prague 6, Czech Republic
| | - Robert Moshammer
- Max Planck Institute for Nuclear Physics, Saupfercheckweg 1, 69117 Heidelberg, Germany
| |
Collapse
|
7
|
Mackie CJ, Lu W, Liang J, Kostko O, Bandyopadhyay B, Gupta I, Ahmed M, Head-Gordon M. Magic Numbers and Stabilities of Photoionized Water Clusters: Computational and Experimental Characterization of the Nanosolvated Hydronium Ion. J Phys Chem A 2023. [PMID: 37441795 DOI: 10.1021/acs.jpca.3c02230] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/15/2023]
Abstract
The stability and distributions of small water clusters generated in a supersonic beam expansion are interrogated by tunable vacuum ultraviolet (VUV) radiation generated at a synchrotron. Time-of-flight mass spectrometry reveals enhanced population of various protonated water clusters (H+(H2O)n) based upon ionization energy and photoionization distance from source, suggesting there are "magic" numbers below the traditional n = 21 that predominates in the literature. These intensity distributions suggest that VUV threshold photoionization (11.0-11.5 eV) of neutral water clusters close to the nozzle exit leads to a different nonequilibrium state compared to a skimmed molecular beam. This results in the appearance of a new magic number at 14. Metadynamics conformer searches coupled with modern density functional calculations are used to identify the global minimum energy structures of protonated water clusters between n = 2 and 21, as well as the manifold of low-lying metastable minima. New lowest energy structures are reported for the cases of n = 5, 6, 11, 12, 16, and 18, and special stability is identified by several measures. These theoretical results are in agreement with the experiments performed in this work in that n = 14 is shown to exhibit additional stability, based on the computed second-order stabilization energy relative to most cluster sizes, though not to the extent of the well-known n = 21 cluster. Other cluster sizes that show some additional energetic stability are n = 7, 9, 12, 17, and 19. To gain insight into the balance between ion-water and water-water interactions as a function of the cluster size, an analysis of the effective two-body interactions (which sum exactly to the total interaction energy) was performed. This analysis reveals a crossover as a function of cluster size between a water-hydronium-dominated regime for small clusters and a water-water-dominated regime for larger clusters around n = 17.
Collapse
Affiliation(s)
- Cameron J Mackie
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
| | - Wenchao Lu
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Jiashu Liang
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
| | - Oleg Kostko
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Biswajit Bandyopadhyay
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Ishan Gupta
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
| | - Musahid Ahmed
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Martin Head-Gordon
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
| |
Collapse
|
8
|
Yin Z, Chang YP, Balčiūnas T, Shakya Y, Djorović A, Gaulier G, Fazio G, Santra R, Inhester L, Wolf JP, Wörner HJ. Femtosecond proton transfer in urea solutions probed by X-ray spectroscopy. Nature 2023; 619:749-754. [PMID: 37380782 PMCID: PMC10371863 DOI: 10.1038/s41586-023-06182-6] [Citation(s) in RCA: 12] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2022] [Accepted: 05/09/2023] [Indexed: 06/30/2023]
Abstract
Proton transfer is one of the most fundamental events in aqueous-phase chemistry and an emblematic case of coupled ultrafast electronic and structural dynamics1,2. Disentangling electronic and nuclear dynamics on the femtosecond timescales remains a formidable challenge, especially in the liquid phase, the natural environment of biochemical processes. Here we exploit the unique features of table-top water-window X-ray absorption spectroscopy3-6 to reveal femtosecond proton-transfer dynamics in ionized urea dimers in aqueous solution. Harnessing the element specificity and the site selectivity of X-ray absorption spectroscopy with the aid of ab initio quantum-mechanical and molecular-mechanics calculations, we show how, in addition to the proton transfer, the subsequent rearrangement of the urea dimer and the associated change of the electronic structure can be identified with site selectivity. These results establish the considerable potential of flat-jet, table-top X-ray absorption spectroscopy7,8 in elucidating solution-phase ultrafast dynamics in biomolecular systems.
Collapse
Affiliation(s)
- Zhong Yin
- Laboratory of Physical Chemistry, ETH Zürich, Zurich, Switzerland.
- International Center for Synchrotron Radiation Innovation Smart, Tohoku University, Miyagi, Sendai, Japan.
| | - Yi-Ping Chang
- GAP-Biophotonics, Université de Genève, Geneva, Switzerland
- European XFEL, Schenefeld, Germany
| | - Tadas Balčiūnas
- Laboratory of Physical Chemistry, ETH Zürich, Zurich, Switzerland
- GAP-Biophotonics, Université de Genève, Geneva, Switzerland
| | - Yashoj Shakya
- Center for Free-Electron Laser Science CFEL, Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany
- Department of Physics, Universität Hamburg, Hamburg, Germany
| | | | | | - Giuseppe Fazio
- Laboratory of Physical Chemistry, ETH Zürich, Zurich, Switzerland
| | - Robin Santra
- Center for Free-Electron Laser Science CFEL, Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany
- Department of Physics, Universität Hamburg, Hamburg, Germany
- Hamburg Centre for Ultrafast Imaging, Universität Hamburg, Hamburg, Germany
| | - Ludger Inhester
- Center for Free-Electron Laser Science CFEL, Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany.
- Hamburg Centre for Ultrafast Imaging, Universität Hamburg, Hamburg, Germany.
| | | | | |
Collapse
|
9
|
Wang E, Kling NG, LaForge AC, Obaid R, Pathak S, Bhattacharyya S, Meister S, Trost F, Lindenblatt H, Schoch P, Kübel M, Pfeifer T, Rudenko A, Díaz-Tendero S, Martín F, Moshammer R, Rolles D, Berrah N. Ultrafast Roaming Mechanisms in Ethanol Probed by Intense Extreme Ultraviolet Free-Electron Laser Radiation: Electron Transfer versus Proton Transfer. J Phys Chem Lett 2023; 14:4372-4380. [PMID: 37140167 DOI: 10.1021/acs.jpclett.2c03764] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Ultrafast H2+ and H3+ formation from ethanol is studied using pump-probe spectroscopy with an extreme ultraviolet (XUV) free-electron laser. The first pulse creates a dication, triggering H2 roaming that leads to H2+ and H3+ formation, which is disruptively probed by a second pulse. At photon energies of 28 and 32 eV, the ratio of H2+ to H3+ increases with time delay, while it is flat at a photon energy of 70 eV. The delay-dependent effect is ascribed to a competition between electron and proton transfer. High-level quantum chemistry calculations show a flat potential energy surface for H2 formation, indicating that the intermediate state may have a long lifetime. The ab initio molecular dynamics simulation confirms that, in addition to the direct emission, a small portion of H2 undergoes a roaming mechanism that leads to two competing pathways: electron transfer from H2 to C2H4O2+ and proton transfer from C2H4O2+ to H2.
Collapse
Affiliation(s)
- Enliang Wang
- J. R. Macdonald Laboratory, Department of Physics, Kansas State University, Manhattan, Kansas 66506-2604, United States
- Hefei National Research Center for Physical Sciences at the Microscale and Department of Modern Physics, University of Science and Technology of China, Hefei 230026, China
| | - Nora G Kling
- Physics Department, University of Connecticut, Storrs, Connecticut 06269-3046, United States
| | - Aaron C LaForge
- Physics Department, University of Connecticut, Storrs, Connecticut 06269-3046, United States
| | - Razib Obaid
- Physics Department, University of Connecticut, Storrs, Connecticut 06269-3046, United States
| | - Shashank Pathak
- J. R. Macdonald Laboratory, Department of Physics, Kansas State University, Manhattan, Kansas 66506-2604, United States
| | - Surjendu Bhattacharyya
- J. R. Macdonald Laboratory, Department of Physics, Kansas State University, Manhattan, Kansas 66506-2604, United States
| | - Severin Meister
- Max Planck Institut für Kernphysik, Saupfercheckweg 1, 69117 Heidelberg, Germany
| | - Florian Trost
- Max Planck Institut für Kernphysik, Saupfercheckweg 1, 69117 Heidelberg, Germany
| | - Hannes Lindenblatt
- Max Planck Institut für Kernphysik, Saupfercheckweg 1, 69117 Heidelberg, Germany
| | - Patrizia Schoch
- Max Planck Institut für Kernphysik, Saupfercheckweg 1, 69117 Heidelberg, Germany
| | - Matthias Kübel
- Institute of Optics and Quantum Electronics, Friedrich Schiller University Jena, D-07743 Jena, Germany
- Helmholtz Institute Jena, Fröbelstieg 3, 07743 Jena, Germany
| | - Thomas Pfeifer
- Max Planck Institut für Kernphysik, Saupfercheckweg 1, 69117 Heidelberg, Germany
| | - Artem Rudenko
- J. R. Macdonald Laboratory, Department of Physics, Kansas State University, Manhattan, Kansas 66506-2604, United States
| | - Sergio Díaz-Tendero
- Departamento de Química, Módulo 13, Universidad Autónoma de Madrid, 28049 Madrid, Spain
- Condensed Matter Physics Center (IFIMAC), Universidad Autónoma de Madrid, 28049 Madrid, Spain
- Institute for Advanced Research in Chemical Sciences (IAdChem), Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | - Fernando Martín
- Departamento de Química, Módulo 13, Universidad Autónoma de Madrid, 28049 Madrid, Spain
- Condensed Matter Physics Center (IFIMAC), Universidad Autónoma de Madrid, 28049 Madrid, Spain
- Instituto Madrileño de Estudios Avanzados en Nanociencia (IMDEA-Nano), Campus de Cantoblanco, 28049 Madrid, Spain
| | - Robert Moshammer
- Max Planck Institut für Kernphysik, Saupfercheckweg 1, 69117 Heidelberg, Germany
| | - Daniel Rolles
- J. R. Macdonald Laboratory, Department of Physics, Kansas State University, Manhattan, Kansas 66506-2604, United States
| | - Nora Berrah
- Physics Department, University of Connecticut, Storrs, Connecticut 06269-3046, United States
| |
Collapse
|
10
|
Zhao R, You P, Meng S. Ring Polymer Molecular Dynamics with Electronic Transitions. PHYSICAL REVIEW LETTERS 2023; 130:166401. [PMID: 37154659 DOI: 10.1103/physrevlett.130.166401] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2022] [Revised: 05/25/2022] [Accepted: 03/20/2023] [Indexed: 05/10/2023]
Abstract
Full quantum dynamics of molecules and materials is of fundamental importance, which requires a faithful description of simultaneous quantum motions of the electron and nuclei. A new scheme is developed for nonadiabatic simulations of coupled electron-nuclear quantum dynamics with electronic transitions based on the Ehrenfest theorem and ring polymer molecular dynamics. Built upon the isomorphic ring polymer Hamiltonian, time-dependent multistate electronic Schrödinger equations are solved self-consistently with approximate equation of motions for nuclei. Each bead bears a distinct electronic configuration and thus moves on a specific effective potential. This independent-bead approach provides an accurate description of the real-time electronic population and quantum nuclear trajectory, maintaining a good agreement with the exact quantum solution. Implementation of first-principles calculations enables us to simulate photoinduced proton transfer in H_{2}O-H_{2}O^{+} where we find a good agreement with experiment.
Collapse
Affiliation(s)
- Ruji Zhao
- Beijing National Laboratory for Condensed Matter Physics and Institute of Physics, Chinese Academy of Sciences, Beijing 100190, China
- School of Physical Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Peiwei You
- Beijing National Laboratory for Condensed Matter Physics and Institute of Physics, Chinese Academy of Sciences, Beijing 100190, China
- School of Physical Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Sheng Meng
- Beijing National Laboratory for Condensed Matter Physics and Institute of Physics, Chinese Academy of Sciences, Beijing 100190, China
- School of Physical Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
- Songshan Lake Materials Laboratory, Dongguan, Guangdong 523808, China
| |
Collapse
|
11
|
Evlyukhin E, Cifligu P, Pravica M, Bhowmik PK, Kim E, Popov D, Park C. Experimental demonstration of necessary conditions for X-ray induced synthesis of cesium superoxide. Phys Chem Chem Phys 2023; 25:1799-1807. [PMID: 36597992 DOI: 10.1039/d2cp04767e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Absorption of sufficiently energetic X-ray photons by a molecular system results in a cascade of ultrafast electronic relaxation processes which leads to a distortion and dissociation of its molecular structure. Here, we demonstrate that only decomposition of powdered cesium oxalate monohydrate induced by monochromatic X-ray irradiation under high pressure leads to the formation of cesium superoxide. Whereas, for an unhydrated form of cesium oxalate subjected to the same extreme conditions, only degradation of the electron density distribution is observed. Moreover, the corresponding model of X-ray induced electronic relaxation cascades with an emphasis on water molecules' critical role is proposed. Our experimental results suggest that the presence of water molecules in initially solid-state systems (i.e. additional electronic relaxation channels) together with applied high pressure (reduced interatomic/intermolecular distance) could potentially be a universal criteria for chemical and structural synthesis of novel compounds via X-ray induced photochemistry.
Collapse
Affiliation(s)
- Egor Evlyukhin
- Department of Physics and Astronomy, University of Nevada Las Vegas, Las Vegas, NV 89154, USA.
| | - Petrika Cifligu
- Department of Physics and Astronomy, University of Nevada Las Vegas, Las Vegas, NV 89154, USA.
| | - Michael Pravica
- Department of Physics and Astronomy, University of Nevada Las Vegas, Las Vegas, NV 89154, USA.
| | - Pradip K Bhowmik
- Department of Chemistry and Biochemistry, University of Nevada Las Vegas, Las Vegas, NV 89154, USA
| | - Eunja Kim
- Department of Physics, The University of Texas at El Paso, El Paso, TX 79968, USA
| | - Dmitry Popov
- High Pressure Collaborative Access Team (HPCAT), X-Ray Science Division, Argonne National Laboratory, Lemont, IL 60439, USA
| | - Changyong Park
- High Pressure Collaborative Access Team (HPCAT), X-Ray Science Division, Argonne National Laboratory, Lemont, IL 60439, USA
| |
Collapse
|
12
|
Low PJ, Chu W, Nie Z, Bin Mohd Yusof MS, Prezhdo OV, Loh ZH. Observation of a transient intermediate in the ultrafast relaxation dynamics of the excess electron in strong-field-ionized liquid water. Nat Commun 2022; 13:7300. [DOI: 10.1038/s41467-022-34981-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2022] [Accepted: 11/11/2022] [Indexed: 11/28/2022] Open
Abstract
AbstractA unified picture of the electronic relaxation dynamics of ionized liquid water has remained elusive despite decades of study. Here, we employ sub-two-cycle visible to short-wave infrared pump-probe spectroscopy and ab initio nonadiabatic molecular dynamics simulations to reveal that the excess electron injected into the conduction band (CB) of ionized liquid water undergoes sequential relaxation to the hydrated electron s ground state via an intermediate state, identified as the elusive p excited state. The measured CB and p-electron lifetimes are 0.26 ± 0.02 ps and 62 ± 10 fs, respectively. Ab initio quantum dynamics yield similar lifetimes and furthermore reveal vibrational modes that participate in the different stages of electronic relaxation, with initial relaxation within the dense CB manifold coupled to hindered translational motions whereas subsequent p-to-s relaxation facilitated by librational and even intramolecular bending modes of water. Finally, energetic considerations suggest that a hitherto unobserved trap state resides ~0.3-eV below the CB edge of liquid water. Our results provide a detailed atomistic picture of the electronic relaxation dynamics of ionized liquid water with unprecedented time resolution.
Collapse
|
13
|
Lyu S, Wiktor J, Pasquarello A. Oxygen Evolution at the BiVO 4–Water Interface: Mechanism of the Water Dehydrogenation Reaction. ACS Catal 2022. [DOI: 10.1021/acscatal.2c03331] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Sai Lyu
- Chaire de Simulation à l’Echelle Atomique (CSEA), Ecole Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland
| | - Julia Wiktor
- Chaire de Simulation à l’Echelle Atomique (CSEA), Ecole Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland
| | - Alfredo Pasquarello
- Chaire de Simulation à l’Echelle Atomique (CSEA), Ecole Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland
| |
Collapse
|
14
|
Xing D, Meng Y, Yuan X, Jin S, Song X, Zare RN, Zhang X. Capture of Hydroxyl Radicals by Hydronium Cations in Water Microdroplets. Angew Chem Int Ed Engl 2022; 61:e202207587. [DOI: 10.1002/anie.202207587] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2022] [Indexed: 12/26/2022]
Affiliation(s)
- Dong Xing
- College of Chemistry Key Laboratory of Advanced Energy Materials Chemistry (Ministry of Education) Renewable Energy Conversion and Storage Center (RECAST) Frontiers Science Center for New Organic Matter Nankai University Tianjin 300071 China
- Haihe Laboratory of Sustainable Chemical Transformations Tianjin 300192 China
- Beijing National Laboratory for Molecular Sciences Beijing 100190 China
| | - Yifan Meng
- Department of Chemistry Stanford University Stanford CA 94305 USA
| | - Xu Yuan
- College of Chemistry Key Laboratory of Advanced Energy Materials Chemistry (Ministry of Education) Renewable Energy Conversion and Storage Center (RECAST) Frontiers Science Center for New Organic Matter Nankai University Tianjin 300071 China
- Haihe Laboratory of Sustainable Chemical Transformations Tianjin 300192 China
- Beijing National Laboratory for Molecular Sciences Beijing 100190 China
| | - Shuihui Jin
- College of Chemistry Key Laboratory of Advanced Energy Materials Chemistry (Ministry of Education) Renewable Energy Conversion and Storage Center (RECAST) Frontiers Science Center for New Organic Matter Nankai University Tianjin 300071 China
- Haihe Laboratory of Sustainable Chemical Transformations Tianjin 300192 China
- Beijing National Laboratory for Molecular Sciences Beijing 100190 China
| | - Xiaowei Song
- Department of Chemistry Stanford University Stanford CA 94305 USA
| | - Richard N. Zare
- Department of Chemistry Stanford University Stanford CA 94305 USA
| | - Xinxing Zhang
- College of Chemistry Key Laboratory of Advanced Energy Materials Chemistry (Ministry of Education) Renewable Energy Conversion and Storage Center (RECAST) Frontiers Science Center for New Organic Matter Nankai University Tianjin 300071 China
- Haihe Laboratory of Sustainable Chemical Transformations Tianjin 300192 China
- Beijing National Laboratory for Molecular Sciences Beijing 100190 China
| |
Collapse
|
15
|
Attosecond spectroscopy of size-resolved water clusters. Nature 2022; 609:507-511. [PMID: 35820616 DOI: 10.1038/s41586-022-05039-8] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2020] [Accepted: 06/28/2022] [Indexed: 11/08/2022]
Abstract
Electron dynamics in water are of fundamental importance for a broad range of phenomena1-3, but their real-time study faces numerous conceptual and methodological challenges4-6. Here, we introduce attosecond size-resolved cluster spectroscopy and build up a molecular-level understanding of the attosecond electron dynamics in water. We measure the effect that the addition of single water molecules has on the photoionization time delays7-9 of water clusters. We find a continuous increase of the delay for clusters containing up to 4-5 molecules and little change towards larger clusters. We show that these delays are proportional to the spatial extension of the created electron hole, which first increases with cluster size and then partially localizes through the onset of structural disorder that is characteristic of large clusters and bulk liquid water. These results suggest a previously unknown sensitivity of photoionization delays to electron-hole delocalization and indicate a direct link between electronic structure and attosecond photoionization dynamics. Our results offer novel perspectives for studying electron/hole delocalization and its attosecond dynamics.
Collapse
|
16
|
Xing D, Meng Y, Yuan X, Jin S, Song X, Zare RN, Zhang X. Capture of Hydroxyl Radicals by Hydronium Cations in Water Microdroplets. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202207587] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Dong Xing
- Nankai University Chemistry 94 Weijin Rd 300071 Tianjin CHINA
| | - Yifan Meng
- Stanford University Department of Chemistry chemistry 380 Roth Way 94305 Stanford UNITED STATES
| | - Xu Yuan
- Nankai University Chemistry 94 Weijin Rd 300071 Tianjin CHINA
| | - Shuihui Jin
- Nankai University Chemistry 94 Weijin Rd 300071 Tianjin CHINA
| | - Xiaowei Song
- Stanford University Chemistry 380 Roth Way 94305 Stanford UNITED STATES
| | - Richard Neil Zare
- Stanford University Dept. of Chemistry Campus Way and Roth Way 94305-5080 Stanford UNITED STATES
| | - Xinxing Zhang
- Nankai University Chemistrty 94 Weijin Rd 300071 Tianjin CHINA
| |
Collapse
|
17
|
Suchan J, Kolafa J, Slavíček P. Electron-induced fragmentation of water droplets: Simulation study. J Chem Phys 2022; 156:144303. [DOI: 10.1063/5.0088591] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The transport of free electrons in a water environment is still poorly understood. We show that additional insight can be brought about by investigating fragmentation patterns of finite-size particles upon electron impact ionization. We have developed a composite protocol aiming to simulate fragmentation of water clusters by electrons with kinetic energies in the range of up to 100 eV. The ionization events for atomistically described molecular clusters are identified by a kinetic Monte Carlo procedure. We subsequently model the fragmentation with classical molecular dynamics simulations, calibrated by non-adiabatic quantum mechanics/molecular mechanics simulations of the ionization process. We consider one-electron ionizations, energy transfer via electronic excitation events, elastic scattering, and also the autoionization events through intermolecular Coulombic decay. The simulations reveal that larger water clusters are often ionized repeatedly, which is the cause of substantial fragmentation. After losing most of its energy, low-energy electrons further contribute to fragmentation by electronic excitations. The simultaneous measurement of cluster size distribution before and after the ionization represents a sensitive measure of the energy transferred into the system by an incident electron.
Collapse
Affiliation(s)
- Jiří Suchan
- Department of Physical Chemistry, University of Chemistry and Technology, Prague, Technická 5, 16628 Prague, Czech Republic
| | - Jiří Kolafa
- Department of Physical Chemistry, University of Chemistry and Technology, Prague, Technická 5, 16628 Prague, Czech Republic
| | - Petr Slavíček
- Department of Physical Chemistry, University of Chemistry and Technology, Prague, Technická 5, 16628 Prague, Czech Republic
| |
Collapse
|
18
|
Cook AR. Sub-picosecond Production of Solute Radical Cations in Tetrahydrofuran after Radiolysis. J Phys Chem A 2021; 125:10189-10197. [PMID: 34793148 DOI: 10.1021/acs.jpca.1c08568] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Ultrafast hole transfer from solvent radical cations produced by radiolysis with ∼10 ps, 9 MeV electron pulses to solutes in tetrahydrofuran (THF) was investigated. Because of rapid fragmentation of initially produced THF+•, solute radical cations are not expected and have not previously been reported. When 9,9-dihexyl-2,7-dibromofluorene (Br2F) at 5 to 1000 mM was used, Br2F+• with radiation chemical yields up to G = 2.23/100 eV absorbed was observed. While more than half of this was the result of direct solute ionization, the results highlight the importance of capturing holes from THF+• prior to solvation and fragmentation. The observed data show a time-resolution limited (15 ps) rise in transient absorption of Br2F+•, identical in form to reports of presolvated or dry electron capture in water and a few organic liquids, including THF. The results were thus interpreted with a similar formalism, finding C37 = 1.7 M, the concentration at which 37% of holes escape capture. The yield of solvent hole capture can be accounted for by the formation of solvent holes adjacent to solute molecules reacting faster than they can fragment; however, mechanisms such as delocalized holes or rapid hopping may play a role. Low temperature results find over two times more capture, supporting the speculation that if THF+• was longer lived, the yield of capture in under 15 ps would have been at least 2 times larger at 1 M Br2F, possibly capturing nearly all available holes from the solvent.
Collapse
Affiliation(s)
- Andrew R Cook
- Chemistry Department, Brookhaven National Laboratory, Upton, New York 11973, United States
| |
Collapse
|
19
|
Lin MF, Singh N, Liang S, Mo M, Nunes JPF, Ledbetter K, Yang J, Kozina M, Weathersby S, Shen X, Cordones AA, Wolf TJA, Pemmaraju CD, Ihme M, Wang XJ. Imaging the short-lived hydroxyl-hydronium pair in ionized liquid water. Science 2021; 374:92-95. [PMID: 34591617 DOI: 10.1126/science.abg3091] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
[Figure: see text].
Collapse
Affiliation(s)
- M-F Lin
- SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA
| | - N Singh
- Department of Mechanical Engineering, Stanford University , Stanford, CA 94305, USA
| | - S Liang
- Department of Chemistry, Stanford University, Stanford, CA 94305, USA
| | - M Mo
- SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA
| | - J P F Nunes
- Department of Physics and Astronomy, University of Nebraska-Lincoln, Lincoln, NE 68588, USA
| | - K Ledbetter
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA.,Department of Physics, Stanford University, Stanford, CA 94305, USA
| | - J Yang
- SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA.,Stanford PULSE Institute, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA
| | - M Kozina
- SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA
| | - S Weathersby
- SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA
| | - X Shen
- SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA
| | - A A Cordones
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA
| | - T J A Wolf
- SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA.,Stanford PULSE Institute, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA
| | - C D Pemmaraju
- SIMES, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA
| | - M Ihme
- Department of Mechanical Engineering, Stanford University , Stanford, CA 94305, USA
| | - X J Wang
- SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA
| |
Collapse
|
20
|
Xu J, Chen D, Meng S. Probing Laser-Induced Plasma Generation in Liquid Water. J Am Chem Soc 2021; 143:10382-10388. [PMID: 34197710 DOI: 10.1021/jacs.1c04675] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Understanding photoexcitation dynamics in liquid water is of crucial significance for both fundamental scientific exploration and technological applications. Despite the observations of photoinduced macroscopic phenomena, the initial atomistic movements and associated energy transfer pathways immediately following laser irradiation are hard to track due to the extreme complexity of laser-water interaction and its ultrafast time scale. We explore the femtosecond evolution of liquid water upon intense photoexcitation based on nonadiabatic quantum dynamics simulations. Separate ionic and electronic dynamics were explicitly monitored with tremendous details unveiled on an unprecedented microscopic level. Water was found to undergo the two-step heating processes. The strong-field effects and electronic excitations dominate the first-stage heating and pressurization. Subsequent relaxation of ionic and electronic subsystems further increases the ionic temperature but releases the large internal pressure. The water molecules are stretched during the laser pulses, and the electronic excitations result in the proton transfers after laser pulses. Intense laser pulses violently excite liquid water, giving rise to severe molecular dissociation and plasma generation during the laser pulses. The laser-induced water plasma is characterized by a high fraction of free protons (∼50%), nonequilibrium ionic and electronic distributions, and a metallic electronic density of states.
Collapse
Affiliation(s)
- Jiyu Xu
- Beijing National Laboratory for Condensed Matter Physics and Institute of Physics, Chinese Academy of Sciences, Beijing 100190, People's Republic of China
| | - Daqiang Chen
- Beijing National Laboratory for Condensed Matter Physics and Institute of Physics, Chinese Academy of Sciences, Beijing 100190, People's Republic of China.,School of Physical Sciences, University of Chinese Academy of Sciences, Beijing 100049, People's Republic of China
| | - Sheng Meng
- Beijing National Laboratory for Condensed Matter Physics and Institute of Physics, Chinese Academy of Sciences, Beijing 100190, People's Republic of China.,School of Physical Sciences, University of Chinese Academy of Sciences, Beijing 100049, People's Republic of China.,Songshan Lake Materials Laboratory, Dongguan, Guangdong 523808, People's Republic of China
| |
Collapse
|
21
|
Shakya Y, Inhester L, Arnold C, Welsch R, Santra R. Ultrafast time-resolved x-ray absorption spectroscopy of ionized urea and its dimer through ab initio nonadiabatic dynamics. STRUCTURAL DYNAMICS (MELVILLE, N.Y.) 2021; 8:034102. [PMID: 34026923 PMCID: PMC8118673 DOI: 10.1063/4.0000076] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/17/2020] [Accepted: 04/18/2021] [Indexed: 11/19/2022]
Abstract
Investigating the early dynamics of chemical systems following ionization is essential for our understanding of radiation damage. However, experimental as well as theoretical investigations are very challenging due to the complex nature of these processes. Time-resolved x-ray absorption spectroscopy on a femtosecond timescale, in combination with appropriate simulations, is able to provide crucial insights into the ultrafast processes that occur upon ionization due to its element-specific probing nature. In this theoretical study, we investigate the ultrafast dynamics of valence-ionized states of urea and its dimer employing Tully's fewest switches surface hopping approach using Koopmans' theorem to describe the ionized system. We demonstrate that following valence ionization through a pump pulse, the time-resolved x-ray absorption spectra at the carbon, nitrogen, and oxygen K-edges reveal rich insights into the dynamics. Excited states of the ionized system give rise to time-delayed blueshifts in the x-ray absorption spectra as a result of electronic relaxation dynamics through nonadiabatic transitions. Moreover, our statistical analysis reveals specific structural dynamics in the molecule that induce time-dependent changes in the spectra. For the urea monomer, we elucidate the possibility to trace effects of specific molecular vibrations in the time-resolved x-ray absorption spectra. For the urea dimer, where ionization triggers a proton transfer reaction, we show how the x-ray absorption spectra can reveal specific details on the progress of proton transfer.
Collapse
|
22
|
Omar KA, Hasnaoui K, de la Lande A. First-Principles Simulations of Biological Molecules Subjected to Ionizing Radiation. Annu Rev Phys Chem 2021; 72:445-465. [PMID: 33878897 DOI: 10.1146/annurev-physchem-101419-013639] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Ionizing rays cause damage to genomes, proteins, and signaling pathways that normally regulate cell activity, with harmful consequences such as accelerated aging, tumors, and cancers but also with beneficial effects in the context of radiotherapies. While the great pace of research in the twentieth century led to the identification of the molecular mechanisms for chemical lesions on the building blocks of biomacromolecules, the last two decades have brought renewed questions, for example, regarding the formation of clustered damage or the rich chemistry involving the secondary electrons produced by radiolysis. Radiation chemistry is now meeting attosecond science, providing extraordinary opportunities to unravel the very first stages of biological matter radiolysis. This review provides an overview of the recent progress made in this direction, focusing mainly on the atto- to femto- to picosecond timescales. We review promising applications of time-dependent density functional theory in this context.
Collapse
Affiliation(s)
- Karwan Ali Omar
- Institut de Chimie Physique, CNRS UMR 8000, Université Paris-Saclay, 91405 Orsay, France; .,Department of Chemistry, College of Education, University of Sulaimani, 41005 Kurdistan, Iraq
| | - Karim Hasnaoui
- High Performance Computing User Support Team, Institut du Développement et des Ressources en Informatique Scientifique (IDRIS), 91403 Orsay, France.,Maison de la Simulation, CNRS, Commissariat à l'Energie Atomique et aux Énergies Alternatives (CEA), Université Paris-Saclay, 91191 Gif-sur-Yvette, France
| | - Aurélien de la Lande
- Institut de Chimie Physique, CNRS UMR 8000, Université Paris-Saclay, 91405 Orsay, France;
| |
Collapse
|
23
|
Musat RM, Roujou JL, Dauvois V, Ferry M, Marchand C, Baldacchino G. New insight on the simultaneous H 2 and HNO 2 production in concentrated HNO 3 aqueous solutions under alpha radiation. RSC Adv 2021; 11:12141-12152. [PMID: 35423782 PMCID: PMC8696651 DOI: 10.1039/d0ra10061g] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2020] [Accepted: 03/05/2021] [Indexed: 02/04/2023] Open
Abstract
Knowledge of hydrogen and nitrous acid yields (G(H2) and G(HNO2)) from α radiolysis of nitric acid solutions is of critical importance for the technological aspects of reprocessing of spent nuclear fuel (SNF). This study provides critical information on the G values for external alpha irradiation of concentrated HNO3 solutions. An investigation-specifically developed experimental setup allows performing this investigation without encountering issues related to extreme high local doses. In situ monitoring of the UV-visible induced absorption in irradiated HNO3 solutions permitted quantification of HNO2 production, and mass spectrometry was used to quantify H2. The influence of the dose rate and HNO3 concentration was investigated, and the primary yields of these two species were determined. It was found that dose rate increase leads to diminished production of HNO2 and H2, while HNO3 concentration increase leads to increased HNO2 formation and reduced H2 production. The values of the primary yields of these two species were determined and compared to the literature reported values. While the determined values show similar trends as those reported, this study provides accurate radiolytic yields for H2 and HNO2 that are radioelement-independent compared to the α radiolysis using radioisotope/HNO3 mixtures and provides the basis for perfecting numerical codes used for simulating the radiolytic processes associated with SNF reprocessing.
Collapse
Affiliation(s)
- Raluca M Musat
- DES - Service d'Étude du Comportement des Radionucleides (SECR), CEA, Université Paris Saclay F-91191 Gif-sur-Yvette France
| | - Jean-Luc Roujou
- DES - Service d'Étude du Comportement des Radionucleides (SECR), CEA, Université Paris Saclay F-91191 Gif-sur-Yvette France
| | - Vincent Dauvois
- DES - Service d'Étude du Comportement des Radionucleides (SECR), CEA, Université Paris Saclay F-91191 Gif-sur-Yvette France
| | - Muriel Ferry
- DES - Service d'Étude du Comportement des Radionucleides (SECR), CEA, Université Paris Saclay F-91191 Gif-sur-Yvette France
| | - Carole Marchand
- DES - Service d'Étude du Comportement des Radionucleides (SECR), CEA, Université Paris Saclay F-91191 Gif-sur-Yvette France
| | | |
Collapse
|
24
|
Leier J, Michenfelder NC, Unterreiner A. Understanding the Photoexcitation of Room Temperature Ionic Liquids. ChemistryOpen 2021; 10:72-82. [PMID: 33565733 PMCID: PMC7874249 DOI: 10.1002/open.202000278] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2020] [Revised: 10/26/2020] [Indexed: 12/14/2022] Open
Abstract
Photoexcitation of (neat) room temperature ionic liquids (RTILs) leads to the observation of transient species that are reminiscent of the composition of the RTILs themselves. In this minireview, we summarize state-of-the-art in the understanding of the underlying elementary processes. By varying the anion or cation, one aim is to generally predict radiation-induced chemistry and physics of RTILs. One major task is to address the fate of excess electrons (and holes) after photoexcitation, which implies an overview of various formation mechanisms considering structural and dynamical aspects. Therefore, transient studies on time scales from femtoseconds to microseconds can greatly help to elucidate the most relevant steps after photoexcitation. Sometimes, radiation may eventually result in destruction of the RTILs making photostability another important issue to be discussed. Finally, characteristic heterogeneities can be associated with specific physicochemical properties. Influencing these properties by adding conventional solvents, like water, can open a wide field of application, which is briefly summarized.
Collapse
Affiliation(s)
- Julia Leier
- Institute of Physical ChemistryKarlsruhe Institute of Technology (KIT)Fritz-Haber-Weg 276131KarlsruheGermany
| | - Nadine C. Michenfelder
- Institute of Physical ChemistryKarlsruhe Institute of Technology (KIT)Fritz-Haber-Weg 276131KarlsruheGermany
| | - Andreas‐Neil Unterreiner
- Institute of Physical ChemistryKarlsruhe Institute of Technology (KIT)Fritz-Haber-Weg 276131KarlsruheGermany
| |
Collapse
|
25
|
Lu L, Wildman A, Jenkins AJ, Young L, Clark AE, Li X. The "Hole" Story in Ionized Water from the Perspective of Ehrenfest Dynamics. J Phys Chem Lett 2020; 11:9946-9951. [PMID: 33170721 DOI: 10.1021/acs.jpclett.0c02987] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
The radiolysis of liquid water and the radiation-matter interactions that happen in aqueous environments are important to the fields of chemistry, materials, and environmental sciences, as well as the biological and physiological response to extreme conditions and medical treatments. The initial stage of radiolysis is the ultrafast response, or hole dynamics, that triggers chemical processes within complex energetic landscapes that may include reactivity. A fundamental understanding necessitates the use of theoretical methods that are capable of simulating both ultrafast coherence and non-adiabatic energy transfer pathways. In this work, we carry out an ab initio Ehrenfest dynamics study to provide a more complete description of the ultrafast dynamics and reactive events initiated by photoionization of water. After sudden ionization, a range of processes, including hole trapping and transfer, large OH oscillations, proton transfer and subsequent relay, formation of the metastable Zundel complex, and long-lived coherence, are identified and new insight into their driving forces is elucidated.
Collapse
Affiliation(s)
- Lixin Lu
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
| | - Andrew Wildman
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
| | - Andrew J Jenkins
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
| | - Linda Young
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
- Department of Physics and James Franck Institute, The University of Chicago, Chicago, Illinois 60637, United States
| | - Aurora E Clark
- Department of Chemistry, Washington State University, Pullman, Washington 99164, United States
- Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - Xiaosong Li
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
- Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| |
Collapse
|
26
|
Water Radical Cations in the Gas Phase: Methods and Mechanisms of Formation, Structure and Chemical Properties. Molecules 2020; 25:molecules25153490. [PMID: 32751962 PMCID: PMC7435662 DOI: 10.3390/molecules25153490] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2020] [Revised: 07/28/2020] [Accepted: 07/29/2020] [Indexed: 12/02/2022] Open
Abstract
Water radical cations, (H2O)n+•, are of great research interest in both fundamental and applied sciences. Fundamental studies of water radical reactions are important to better understand the mechanisms of natural processes, such as proton transfer in aqueous solutions, the formation of hydrogen bonds and DNA damage, as well as for the discovery of new gas-phase reactions and products. In applied science, the interest in water radicals is prompted by their potential in radiobiology and as a source of primary ions for selective and sensitive chemical ionization. However, in contrast to protonated water clusters, (H2O)nH+, which are relatively easy to generate and isolate in experiments, the generation and isolation of radical water clusters, (H2O)n+•, is tremendously difficult due to their ultra-high reactivity. This review focuses on the current knowledge and unknowns regarding (H2O)n+• species, including the methods and mechanisms of their formation, structure and chemical properties.
Collapse
|
27
|
Christensen EG, Steele RP. Stepwise Activation of Water by Open-Shell Interactions, Cl(H 2O) n=4–8,17. J Phys Chem A 2020; 124:3417-3437. [DOI: 10.1021/acs.jpca.0c01544] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Elizabeth G. Christensen
- Department of Chemistry and Henry Eyring Center for Theoretical Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112, United States
| | - Ryan P. Steele
- Department of Chemistry and Henry Eyring Center for Theoretical Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112, United States
| |
Collapse
|
28
|
Musat R, Marignier JL, Le Naour C, Denisov S, Venault L, Moisy P, Mostafavi M. Pulse radiolysis study on the reactivity of NO 3˙ radical toward uranous(iv), hydrazinium nitrate and hydroxyl ammonium nitrate at room temperature and at 45 °C. Phys Chem Chem Phys 2020; 22:5188-5197. [PMID: 32090224 DOI: 10.1039/c9cp07034f] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
Concentrated nitric acid solutions subjected to radiation produce radicals of extreme importance in the reprocessing of spent nuclear fuel. Knowledge of the different rate constants of the reactions involved in this chemistry is needed to improve the efficiency of the process and to define safe operating practices. Pulse radiolysis measurements are performed to find the rate constant of the reaction between NO3˙ radicals and U(iv) in highly concentrated nitrate solution. The optimal stabilization conditions toward thermal oxidation are defined for the considered solutions at room temperature and at 45 °C by adding anti-nitrous agents such as hydrazinium nitrate (HN) and hydroxyl ammonium nitrate (HAN). The decay of the NO3˙ radical is monitored and its reaction rates with HN, HAN and U(iv) are found to be 1.3 × 105, 1.5 × 107 and 1.6 × 106 M-1 s-1 at room temperature. The latter value is more than 10 times lower than the one currently used in numerical codes for simulation of the long-term radiolytic degradation associated with the reprocessing and storage of spent nuclear waste. At 45 °C, conditions similar to the reprocessing of spent fuel, the values of the rate constants of NO3˙ radical toward HN, HAN and U(iv) increase and are found to be 2.6 × 105, 2.9 × 107 and 9.3 × 106 M-1 s-1.
Collapse
Affiliation(s)
- R Musat
- Institut de Chimie Physique CNRS-Université Paris-Saclay, 91405 Orsay, France.
| | - J L Marignier
- Institut de Chimie Physique CNRS-Université Paris-Saclay, 91405 Orsay, France.
| | - C Le Naour
- Institut de Physique Nucléaire, CNRS-IN2P3, Université Paris-Sud, Université Paris-Saclay, 91406 Orsay Cedex, France
| | - S Denisov
- Institut de Chimie Physique CNRS-Université Paris-Saclay, 91405 Orsay, France.
| | - L Venault
- CEA, DEN, DMRC, Univ Montpellier, France
| | - Ph Moisy
- CEA, DEN, DMRC, Univ Montpellier, France
| | - M Mostafavi
- Institut de Chimie Physique CNRS-Université Paris-Saclay, 91405 Orsay, France.
| |
Collapse
|
29
|
Loh ZH, Doumy G, Arnold C, Kjellsson L, Southworth SH, Al Haddad A, Kumagai Y, Tu MF, Ho PJ, March AM, Schaller RD, Bin Mohd Yusof MS, Debnath T, Simon M, Welsch R, Inhester L, Khalili K, Nanda K, Krylov AI, Moeller S, Coslovich G, Koralek J, Minitti MP, Schlotter WF, Rubensson JE, Santra R, Young L. Observation of the fastest chemical processes in the radiolysis of water. Science 2020; 367:179-182. [DOI: 10.1126/science.aaz4740] [Citation(s) in RCA: 84] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2019] [Accepted: 11/15/2019] [Indexed: 01/01/2023]
Abstract
Elementary processes associated with ionization of liquid water provide a framework for understanding radiation-matter interactions in chemistry and biology. Although numerous studies have been conducted on the dynamics of the hydrated electron, its partner arising from ionization of liquid water, H2O+, remains elusive. We used tunable femtosecond soft x-ray pulses from an x-ray free electron laser to reveal the dynamics of the valence hole created by strong-field ionization and to track the primary proton transfer reaction giving rise to the formation of OH. The isolated resonance associated with the valence hole (H2O+/OH) enabled straightforward detection. Molecular dynamics simulations revealed that the x-ray spectra are sensitive to structural dynamics at the ionization site. We found signatures of hydrated-electron dynamics in the x-ray spectrum.
Collapse
Affiliation(s)
- Z.-H. Loh
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, Singapore
| | - G. Doumy
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, IL, USA
| | - C. Arnold
- Center for Free-Electron Laser Science, DESY, Hamburg, Germany
- Department of Physics, Universität Hamburg, Hamburg, Germany
- Hamburg Centre for Ultrafast Imaging, Hamburg, Germany
| | - L. Kjellsson
- Department of Physics and Astronomy, Uppsala University, Uppsala, Sweden
- European XFEL GmbH, Schenefeld, Germany
| | - S. H. Southworth
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, IL, USA
| | - A. Al Haddad
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, IL, USA
| | - Y. Kumagai
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, IL, USA
| | - M.-F. Tu
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, IL, USA
| | - P. J. Ho
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, IL, USA
| | - A. M. March
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, IL, USA
| | - R. D. Schaller
- Center for Nanoscale Materials, Argonne National Laboratory, Lemont, IL, USA
- Department of Chemistry, Northwestern University, Evanston, IL, USA
| | - M. S. Bin Mohd Yusof
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, Singapore
| | - T. Debnath
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, Singapore
| | - M. Simon
- Sorbonne Université and CNRS, Laboratoire de Chemie Physique-Matière et Rayonnement, LCPMR, F-750005 Paris, France
| | - R. Welsch
- Center for Free-Electron Laser Science, DESY, Hamburg, Germany
- Hamburg Centre for Ultrafast Imaging, Hamburg, Germany
| | - L. Inhester
- Center for Free-Electron Laser Science, DESY, Hamburg, Germany
| | - K. Khalili
- Department of Energy Conversion and Storage, Technical University of Denmark, Roskilde, Denmark
| | - K. Nanda
- Department of Chemistry, University of Southern California, Los Angeles, CA, USA
| | - A. I. Krylov
- Center for Free-Electron Laser Science, DESY, Hamburg, Germany
- Department of Chemistry, University of Southern California, Los Angeles, CA, USA
| | - S. Moeller
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - G. Coslovich
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - J. Koralek
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - M. P. Minitti
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - W. F. Schlotter
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - J.-E. Rubensson
- Department of Physics and Astronomy, Uppsala University, Uppsala, Sweden
| | - R. Santra
- Center for Free-Electron Laser Science, DESY, Hamburg, Germany
- Department of Physics, Universität Hamburg, Hamburg, Germany
- Hamburg Centre for Ultrafast Imaging, Hamburg, Germany
| | - L. Young
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, IL, USA
- Department of Physics and James Franck Institute, University of Chicago, Chicago, IL, USA
| |
Collapse
|
30
|
Svoboda V, Michiels R, LaForge AC, Med J, Stienkemeier F, Slavíček P, Wörner HJ. Real-time observation of water radiolysis and hydrated electron formation induced by extreme-ultraviolet pulses. SCIENCE ADVANCES 2020; 6:eaaz0385. [PMID: 32010776 PMCID: PMC6968931 DOI: 10.1126/sciadv.aaz0385] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2019] [Accepted: 11/26/2019] [Indexed: 05/17/2023]
Abstract
The dominant pathway of radiation damage begins with the ionization of water. Thus far, however, the underlying primary processes could not be conclusively elucidated. Here, we directly study the earliest steps of extreme ultraviolet (XUV)-induced water radiolysis through one-photon excitation of large water clusters using time-resolved photoelectron imaging. Results are presented for H2O and D2O clusters using femtosecond pump pulses centered at 133 or 80 nm. In both excitation schemes, hydrogen or proton transfer is observed to yield a prehydrated electron within 30 to 60 fs, followed by its solvation in 0.3 to 1.0 ps and its decay through geminate recombination on a ∼10-ps time scale. These results are interpreted by comparison with detailed multiconfigurational non-adiabatic ab-initio molecular dynamics calculations. Our results provide the first comprehensive picture of the primary steps of radiation chemistry and radiation damage and demonstrate new approaches for their study with unprecedented time resolution.
Collapse
Affiliation(s)
- Vít Svoboda
- Laboratory of Physical Chemistry, ETH-Zürich, 8093 Zürich, Switzerland
| | - Rupert Michiels
- Institute of Physics, University of Freiburg, 79104 Freiburg, Germany
| | - Aaron C. LaForge
- Institute of Physics, University of Freiburg, 79104 Freiburg, Germany
| | - Jakub Med
- Department of Physical chemistry, UCT Prague, 16628 Prague, Czech Republic
| | | | - Petr Slavíček
- Department of Physical chemistry, UCT Prague, 16628 Prague, Czech Republic
| | - Hans Jakob Wörner
- Laboratory of Physical Chemistry, ETH-Zürich, 8093 Zürich, Switzerland
| |
Collapse
|
31
|
Christensen EG, Steele RP. Probing the Partial Activation of Water by Open-Shell Interactions, Cl(H 2O) 1-4. J Phys Chem A 2019; 123:8657-8673. [PMID: 31513400 DOI: 10.1021/acs.jpca.9b07235] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The partial chemical activation of water by reactive radicals was examined computationally for small clusters of chlorine and water, Cl•(H2O)n=1-4. Using an automated isomer-search procedure, dozens of unique, stable structures were computed. Among the resulting structural classes were intact, hydrated-chlorine isomers, as well as hydrogen-abstracted (HCl)(OH)(H2O)n-1 configurations. The latter showed increased stability as the degree of hydration increased, until n = 4, where a new class of structures was discovered with a chloride ion bound to an oxidized water network. The electronic structure of these three structural classes was investigated, and spectral signatures of this hydration-based evolution were connected to these electronic properties. An ancillary outcome of this detailed computational analysis, including coupled-cluster benchmarks, was the calibration of cost-effective quantum chemistry methods for future studies of these radical-water complexes.
Collapse
Affiliation(s)
- Elizabeth G Christensen
- Department of Chemistry and Henry Eyring Center for Theoretical Chemistry , University of Utah , 315 South 1400 East , Salt Lake City , Utah 84112 , United States
| | - Ryan P Steele
- Department of Chemistry and Henry Eyring Center for Theoretical Chemistry , University of Utah , 315 South 1400 East , Salt Lake City , Utah 84112 , United States
| |
Collapse
|
32
|
Ma J, Denisov SA, Adhikary A, Mostafavi M. Ultrafast Processes Occurring in Radiolysis of Highly Concentrated Solutions of Nucleosides/Tides. Int J Mol Sci 2019; 20:ijms20194963. [PMID: 31597345 PMCID: PMC6801490 DOI: 10.3390/ijms20194963] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2019] [Revised: 09/30/2019] [Accepted: 10/01/2019] [Indexed: 12/18/2022] Open
Abstract
Among the radicals (hydroxyl radical (•OH), hydrogen atom (H•), and solvated electron (esol−)) that are generated via water radiolysis, •OH has been shown to be the main transient species responsible for radiation damage to DNA via the indirect effect. Reactions of these radicals with DNA-model systems (bases, nucleosides, nucleotides, polynucleotides of defined sequences, single stranded (ss) and double stranded (ds) highly polymeric DNA, nucleohistones) were extensively investigated. The timescale of the reactions of these radicals with DNA-models range from nanoseconds (ns) to microseconds (µs) at ambient temperature and are controlled by diffusion or activation. However, those studies carried out in dilute solutions that model radiation damage to DNA via indirect action do not turn out to be valid in dense biological medium, where solute and water molecules are in close contact (e.g., in cellular environment). In that case, the initial species formed from water radiolysis are two radicals that are ultrashort-lived and charged: the water cation radical (H2O•+) and prethermalized electron. These species are captured by target biomolecules (e.g., DNA, proteins, etc.) in competition with their inherent pathways of proton transfer and relaxation occurring in less than 1 picosecond. In addition, the direct-type effects of radiation, i.e., ionization of macromolecule plus excitations proximate to ionizations, become important. The holes (i.e., unpaired spin or cation radical sites) created by ionization undergo fast spin transfer across DNA subunits. The exploration of the above-mentioned ultrafast processes is crucial to elucidate our understanding of the mechanisms that are involved in causing DNA damage via direct-type effects of radiation. Only recently, investigations of these ultrafast processes have been attempted by studying concentrated solutions of nucleosides/tides under ambient conditions. Recent advancements of laser-driven picosecond electron accelerators have provided an opportunity to address some long-term puzzling questions in the context of direct-type and indirect effects of DNA damage. In this review, we have presented key findings that are important to elucidate mechanisms of complex processes including excess electron-mediated bond breakage and hole transfer, occurring at the single nucleoside/tide level.
Collapse
Affiliation(s)
- Jun Ma
- Department of Nuclear Science and Engineering, Nanjing University of Aeronautics and Astronautics, Nanjing 211106, China.
- Collaborative Innovation Center of Radiation Medicine of Jiangsu Higher Education Institutions, Soochow University, Suzhou 215000, China.
| | - Sergey A Denisov
- Laboratoire de Chimie Physique, UMR 8000 CNRS/Université Paris-Sud, Bât. 349, 91405 Orsay, CEDEX, France.
| | - Amitava Adhikary
- Department of Chemistry, Oakland University, 146 Library Drive, Rochester, MI 48309, USA.
| | - Mehran Mostafavi
- Laboratoire de Chimie Physique, UMR 8000 CNRS/Université Paris-Sud, Bât. 349, 91405 Orsay, CEDEX, France.
| |
Collapse
|
33
|
Patwary MM, Kanike V, Sanguanmith S, Meesungnoen J, Islam MM, Jay-Gerin JP. Low linear energy transfer radiolysis of supercritical water at 400 °C: in situ generation of ultrafast, transient, density-dependent "acid spikes". Phys Chem Chem Phys 2019; 21:7137-7146. [PMID: 30888004 DOI: 10.1039/c9cp00790c] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
There is growing interest in the radiation chemistry of supercritical water (SCW), as its use as a coolant in a nuclear reactor (Generation IV) is the logical evolution of the current (Generation III or less) water-cooled reactors. However, current knowledge about the potential effects of water radiolysis in a Gen-IV supercritical water-cooled reactor (SCWR) is incomplete. In this work, Monte Carlo track chemistry simulations of the low linear energy transfer (LET) radiolysis of SCW (H2O) at 400 °C are used in combination with a spherical "spur" model to study the effect of water density on the in situ radiolytic formation of H3O+ ions and the corresponding abrupt, transient, highly acidic pH response ("acid spikes") that is observed immediately after irradiation. The magnitude and duration of this acidic pH effect depend on the water density in the considered range of 0.15-0.6 g cm-3. It is strongest at times less than a few tens of picoseconds with the pH remaining nearly constant at ∼1.6 and 1.9 for the highest ("liquid-like") and lowest ("gas-like") density, respectively. At longer times, the pH gradually increases for all densities and finally reaches a constant value corresponding to the non-radiolytic, pre-irradiation concentration of H3O+, due to the autoprotolysis of water. Our results show that the lower the density of the water, the longer the time required to reach this constant value, ranging from ∼50 ns at 0.6 g cm-3 (pH ∼ 5.6) to ∼1 μs at 0.15 g cm-3 (pH ∼ 8.5). The generation of these highly acidic pH fluctuations around the "native" radiation tracks, though local and transient, raises questions about the potential implications of this effect in proposed Gen-IV SCW-cooled reactors regarding corrosion and degradation of materials.
Collapse
Affiliation(s)
- Md Mohsin Patwary
- Département de Médecine Nucléaire et de Radiobiologie, Faculté de Médecine et des Sciences de la Santé, Université de Sherbrooke, 3001, 12e Avenue Nord, Sherbrooke, Québec J1H 5N4, Canada.
| | | | | | | | | | | |
Collapse
|
34
|
Gámez F, Pysanenko A, Fárník M, Ončák M. Ionization of carboxylic acid clusters in the gas phase and on free ArN and (H2O)N nanoparticles: valeric acid as a model for small carboxylic acids. Phys Chem Chem Phys 2019; 21:19201-19208. [DOI: 10.1039/c9cp03279g] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In ionized valeric acid clusters, not only the expected proton transfer reaction, but also anhydride formation is observed. Could this be a common motif in the ionization chemistry of small carboxylic acid clusters?
Collapse
Affiliation(s)
- Francisco Gámez
- J. Heyrovský Institute of Physical Chemistry
- v.v.i., Czech Academy of Sciences
- Dolejškova 2155/3
- 182 23 Prague
- Czech Republic
| | - Andriy Pysanenko
- J. Heyrovský Institute of Physical Chemistry
- v.v.i., Czech Academy of Sciences
- Dolejškova 2155/3
- 182 23 Prague
- Czech Republic
| | - Michal Fárník
- J. Heyrovský Institute of Physical Chemistry
- v.v.i., Czech Academy of Sciences
- Dolejškova 2155/3
- 182 23 Prague
- Czech Republic
| | - Milan Ončák
- Institut für Ionenphysik und Angewandte Physik
- Universität Innsbruck
- A-6020 Innsbruck
- Austria
| |
Collapse
|
35
|
Poštulka J, Slavíček P, Domaracka A, Pysanenko A, Fárník M, Kočišek J. Proton transfer from pinene stabilizes water clusters. Phys Chem Chem Phys 2019; 21:13925-13933. [DOI: 10.1039/c8cp05959d] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Molecular beams experiments and ab initio theory reveal indirect formation of protonated water clusters by ionization of pinene.
Collapse
Affiliation(s)
- Jan Poštulka
- Department of Physical Chemistry, University of Chemistry and Technology
- Prague 6
- Czech Republic
| | - Petr Slavíček
- Department of Physical Chemistry, University of Chemistry and Technology
- Prague 6
- Czech Republic
- J. Heyrovský Institute of Physical Chemistry v.v.i., The Czech Academy of Sciences
- 18223 Prague
| | - Alicja Domaracka
- Normandie Univ., ENSICAEN, UNICAEN, CEA, CNRS, CIMAP
- 14000 Caen
- France
| | - Andriy Pysanenko
- J. Heyrovský Institute of Physical Chemistry v.v.i., The Czech Academy of Sciences
- 18223 Prague
- Czech Republic
| | - Michal Fárník
- J. Heyrovský Institute of Physical Chemistry v.v.i., The Czech Academy of Sciences
- 18223 Prague
- Czech Republic
| | - Jaroslav Kočišek
- J. Heyrovský Institute of Physical Chemistry v.v.i., The Czech Academy of Sciences
- 18223 Prague
- Czech Republic
| |
Collapse
|
36
|
Grygoryeva K, Ončák M, Pysanenko A, Fárník M. Pyruvic acid proton and hydrogen transfer reactions in clusters. Phys Chem Chem Phys 2019; 21:8221-8227. [DOI: 10.1039/c8cp07008c] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We investigate ion chemistry in pyruvic acid (PA) clusters in a molecular beam experiment.
Collapse
Affiliation(s)
- Kateryna Grygoryeva
- J. Heyrovský Institute of Physical Chemistry, v.v.i
- Czech Academy of Sciences
- 182 23 Prague
- Czech Republic
- University of Chemistry and Technology
| | - Milan Ončák
- Institut für Ionenphysik und Angewandte Physik
- Universität Innsbruck
- A-6020 Innsbruck
- Austria
| | - Andriy Pysanenko
- J. Heyrovský Institute of Physical Chemistry, v.v.i
- Czech Academy of Sciences
- 182 23 Prague
- Czech Republic
| | - Michal Fárník
- J. Heyrovský Institute of Physical Chemistry, v.v.i
- Czech Academy of Sciences
- 182 23 Prague
- Czech Republic
| |
Collapse
|
37
|
Richter C, Hollas D, Saak CM, Förstel M, Miteva T, Mucke M, Björneholm O, Sisourat N, Slavíček P, Hergenhahn U. Competition between proton transfer and intermolecular Coulombic decay in water. Nat Commun 2018; 9:4988. [PMID: 30478319 PMCID: PMC6255891 DOI: 10.1038/s41467-018-07501-6] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2018] [Accepted: 11/06/2018] [Indexed: 12/01/2022] Open
Abstract
Intermolecular Coulombic decay (ICD) is a ubiquitous relaxation channel of electronically excited states in weakly bound systems, ranging from dimers to liquids. As it is driven by electron correlation, it was assumed that it will dominate over more established energy loss mechanisms, for example fluorescence. Here, we use electron-electron coincidence spectroscopy to determine the efficiency of the ICD process after 2a1 ionization in water clusters. We show that this efficiency is surprisingly low for small water clusters and that it gradually increases to 40-50% for clusters with hundreds of water units. Ab initio molecular dynamics simulations reveal that proton transfer between neighboring water molecules proceeds on the same timescale as ICD and leads to a configuration in which the ICD channel is closed. This conclusion is further supported by experimental results from deuterated water. Combining experiment and theory, we infer an intrinsic ICD lifetime of 12-52 fs for small water clusters.
Collapse
Affiliation(s)
- Clemens Richter
- Leibniz Institute of Surface Engineering (IOM), Permoserstr. 15, 04318, Leipzig, Germany
| | - Daniel Hollas
- Department of Physical Chemistry, University of Chemistry and Technology Prague, Technická 5, 16628, Prague 6, Czech Republic
| | - Clara-Magdalena Saak
- Department of Physics and Astronomy, Uppsala University, Box 516, 751 20, Uppsala, Sweden
| | - Marko Förstel
- Max Planck Institute for Plasma Physics, Boltzmannstr. 2, 85748, Garching, Germany
- Institute for Optics and Atomic Physics, Technical University Berlin, Hardenbergstr. 36, 10623, Berlin, Germany
| | - Tsveta Miteva
- Laboratoire de Chimie Physique Matière et Rayonnement, UMR 7614, Sorbonne Université, CNRS, F-75005, Paris, France
| | - Melanie Mucke
- Department of Physics and Astronomy, Uppsala University, Box 516, 751 20, Uppsala, Sweden
| | - Olle Björneholm
- Department of Physics and Astronomy, Uppsala University, Box 516, 751 20, Uppsala, Sweden
| | - Nicolas Sisourat
- Laboratoire de Chimie Physique Matière et Rayonnement, UMR 7614, Sorbonne Université, CNRS, F-75005, Paris, France
| | - Petr Slavíček
- Department of Physical Chemistry, University of Chemistry and Technology Prague, Technická 5, 16628, Prague 6, Czech Republic.
| | - Uwe Hergenhahn
- Leibniz Institute of Surface Engineering (IOM), Permoserstr. 15, 04318, Leipzig, Germany.
- Max Planck Institute for Plasma Physics, Wendelsteinstr. 1, 17491, Greifswald, Germany.
| |
Collapse
|
38
|
Fárník M, Pysanenko A, Moriová K, Ballauf L, Scheier P, Chalabala J, Slavíček P. Ionization of Ammonia Nanoices with Adsorbed Methanol Molecules. J Phys Chem A 2018; 122:8458-8468. [PMID: 30296830 DOI: 10.1021/acs.jpca.8b07974] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Large ammonia clusters represent a model system of ices that are omnipresent throughout the space. The interaction of ammonia ices with other hydrogen-boding molecules such as methanol or water and their behavior upon an ionization are thus relevant in the astrochemical context. In this study, ammonia clusters (NH3) N with the mean size N̅ ≈ 230 were prepared in molecular beams and passed through a pickup cell in which methanol molecules were adsorbed. At the highest exploited pickup pressures, the average composition of (NH3) N(CH3OH) M clusters was estimated to be N: M ≈ 210:10. On the other hand, the electron ionization of these clusters yielded about 75% of methanol-containing fragments (NH3) n(CH3OH) mH+ compared to 25% contribution of pure ammonia (NH3) nH+ ions. On the basis of this substantial disproportion, we propose the following ionization mechanism: The prevailing ammonia is ionized in most cases, resulting in NH4+ core solvated most likely with four ammonia molecules, yielding the well-known "magic number" structure (NH3)4NH4+. The methanol molecules exhibit a strong propensity for sticking to the fragment ion. We have also considered mechanisms of intracluster reactions. In most cases, proton transfer between ammonia units take place. The theoretical calculations suggested the proton transfer either from the methyl group or from the hydroxyl group of the ionized methanol molecule to ammonia to be the energetically open channels. However, the experiments with selectively deuterated methanols did not show any evidence for the D+ transfer from the CD3 group. The proton transfer from the hydroxyl group could not be excluded entirely or confirmed unambiguously by the experiment.
Collapse
Affiliation(s)
- Michal Fárník
- J. Heyrovský Institute of Physical Chemistry, The Czech Academy of Sciences, Dolejškova 3, 182 23 Prague, Czech Republic
| | - Andriy Pysanenko
- J. Heyrovský Institute of Physical Chemistry, The Czech Academy of Sciences, Dolejškova 3, 182 23 Prague, Czech Republic
| | - Kamila Moriová
- J. Heyrovský Institute of Physical Chemistry, The Czech Academy of Sciences, Dolejškova 3, 182 23 Prague, Czech Republic
| | - Lorenz Ballauf
- Institut fur Ionenphysik und Angewandte Physik, Universitat Innsbruck, Technikerstr. 25, A-6020 Innsbruck, Austria
| | - Paul Scheier
- Institut fur Ionenphysik und Angewandte Physik, Universitat Innsbruck, Technikerstr. 25, A-6020 Innsbruck, Austria
| | - Jan Chalabala
- Department of Physical Chemistry, University of Chemistry and Technology, Technicka 5, 166 28 Prague, Czech Republic
| | - Petr Slavíček
- J. Heyrovský Institute of Physical Chemistry, The Czech Academy of Sciences, Dolejškova 3, 182 23 Prague, Czech Republic
- Department of Physical Chemistry, University of Chemistry and Technology, Technicka 5, 166 28 Prague, Czech Republic
| |
Collapse
|
39
|
Evlyukhin E, Kim E, Goldberger D, Cifligu P, Schyck S, Weck PF, Pravica M. High-pressure-assisted X-ray-induced damage as a new route for chemical and structural synthesis. Phys Chem Chem Phys 2018; 20:18949-18956. [PMID: 29868652 DOI: 10.1039/c8cp02119h] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
X-ray induced damage has been known for decades and has largely been viewed as a tremendous nuisance. We, on the other hand, harness the highly ionizing and penetrating properties of hard X-rays to initiate novel decomposition and synthetic chemistry. Here, we show that powdered cesium oxalate monohydrate pressurized to ≤0.5 GPa and irradiated with X-rays of energies near the cesium K-edge undergoes molecular and structural transformations with one of the final products exhibiting a new type of bcc crystal structure that has previously not been observed. Additionally, based on cascades of ultrafast electronic relaxation steps triggered by the absorption of one X-ray photon, we propose a model explaining the X-ray induced damage of multitype bounded matter. As X-rays are ubiquitous, these results show promise in the preparation of novel compounds and novel structures that are inaccessible via conventional methods. They may offer insight into the formation of complex organic compounds in outer space.
Collapse
Affiliation(s)
- Egor Evlyukhin
- Department of Physics and Astronomy, University of Nevada Las Vegas (UNLV), 89154-4002 Las Vegas, Nevada, USA.
| | | | | | | | | | | | | |
Collapse
|
40
|
Chalabala J, Uhlig F, Slavíček P. Assessment of Real-Time Time-Dependent Density Functional Theory (RT-TDDFT) in Radiation Chemistry: Ionized Water Dimer. J Phys Chem A 2018. [PMID: 29513531 DOI: 10.1021/acs.jpca.8b01259] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Ionization in the condensed phase and molecular clusters leads to a complicated chain of processes with coupled electron-nuclear dynamics. It is difficult to describe such dynamics with conventional nonadiabatic molecular dynamics schemes since the number of states swiftly increases as the molecular system grows. It is therefore attractive to use a direct electron and nuclear propagation such as the real-time time-dependent density functional theory (RT-TDDFT). Here we report a RT-TDDFT benchmark study on simulations of singly and doubly ionized states of a water monomer and dimer as a prototype for more complex processes in a condensed phase. We employed the RT-TDDFT based Ehrenfest molecular dynamics with a generalized gradient approximate (GGA) functional and compared it with wave-function-based surface hopping (SH) simulations. We found that the initial dynamics of a singly HOMO ionized water dimer is similar for both the RT-TDDFT/GGA and the SH simulations but leads to completely different reaction channels on a longer time scale. This failure is attributed to the self-interaction error in the GGA functionals and it can be avoided by using hybrid functionals with large fraction of exact exchange (represented here by the BHandHLYP functional). The simulations of doubly ionized states are reasonably described already at the GGA level. This suggests that the RT-TDDFT/GGA method could describe processes following the autoionization processes such as Auger emission, while its applicability to more complex processes such as intermolecular Coulombic decay remains limited.
Collapse
Affiliation(s)
- Jan Chalabala
- Department of Physical Chemistry , University of Chemistry and Technology , Technická 5 , 16628 Prague , Czech Republic
| | - Frank Uhlig
- Department of Physical Chemistry , University of Chemistry and Technology , Technická 5 , 16628 Prague , Czech Republic.,Institute for Computational Physics , University of Stuttgart , Allmandring 3 , 70569 Stuttgart , Germany
| | - Petr Slavíček
- Department of Physical Chemistry , University of Chemistry and Technology , Technická 5 , 16628 Prague , Czech Republic.,Jaroslav Heyrovský Institute of Physical Chemistry, Academy of Sciences of the Czech Republic , Dolejškova 3 , 18200 Prague , Czech Republic
| |
Collapse
|
41
|
Musat R, Denisov SA, Marignier JL, Mostafavi M. Decoding the Three-Pronged Mechanism of NO 3• Radical Formation in HNO 3 Solutions at 22 and 80 °C Using Picosecond Pulse Radiolysis. J Phys Chem B 2018; 122:2121-2129. [PMID: 29365267 DOI: 10.1021/acs.jpcb.7b12702] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
With nitric acid (HNO3) being at the core of nuclear technology through actinides separation and extraction processes, achieving a complete characterization of the complex processes involving concentrated HNO3 solutions under ionizing radiation equates bringing efficiency and safety into their operation. In this work, the three mechanisms contributing to the formation of nitrate radicals (NO3•) in concentrated nitric acid were investigated by measuring the radiolytic yield of NO3• in HNO3 solutions (0.5-23.5 M) at room (22.5 °C) and elevated (80 °C) temperatures on time scales spanning from picosecond to microsecond by pulse radiolysis measurements. We conclude that the formation yield of NO3•, just after the 7 ps electron pulse, is due to the direct effect and to the ultrafast electron transfer reaction between NO3- and the water cation radical, H2O•+. The absolute formation yield of NO3• radicals due to the direct effect, GNO3•dir, is found to be (3.4 ± 0.1) × 10-7 mol·J-1, irrespective of the concentration and temperature. On longer time scales, >1 ns, an additional contribution to NO3• formation from the reaction between •OH radicals and undissociated HNO3 is observed. The rate constant of this reaction, which is activation-controlled, was determined to be (5.3 ± 0.2) × 107 M-1·s-1 for 22.5 °C, reaching a value of (1.1 ± 0.2) × 108 M-1·s-1 at 80 °C.
Collapse
Affiliation(s)
- Raluca Musat
- Laboratoire de Chimie Physique, CNRS/Université Paris-Sud , Bâtiment 349, Orsay 91405, France
| | - Sergey A Denisov
- Laboratoire de Chimie Physique, CNRS/Université Paris-Sud , Bâtiment 349, Orsay 91405, France
| | - Jean-Louis Marignier
- Laboratoire de Chimie Physique, CNRS/Université Paris-Sud , Bâtiment 349, Orsay 91405, France
| | - Mehran Mostafavi
- Laboratoire de Chimie Physique, CNRS/Université Paris-Sud , Bâtiment 349, Orsay 91405, France
| |
Collapse
|
42
|
Ultrafast Chemistry of Water Radical Cation, H₂O •+, in Aqueous Solutions. Molecules 2018; 23:molecules23020244. [PMID: 29373497 PMCID: PMC6017428 DOI: 10.3390/molecules23020244] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2018] [Revised: 01/19/2018] [Accepted: 01/22/2018] [Indexed: 11/16/2022] Open
Abstract
Oxidation reactions by radicals constitute a very important class of chemical reactions in solution. Radiation Chemistry methods allow producing, in a controlled way, very reactive oxidizing radicals, such as OH•, CO3•–, NO3•, SO4•–, and N3•. Although the radical cation of water, H2O•+, with a very short lifetime (shorter than 1 ps) is the precursor of these radicals in aqueous solutions, its chemistry is usually known to be limited to the reaction of proton transfer by forming OH• radical. Herein, we stress situations where H2O•+ undergoes electron transfer reaction in competition with proton transfer.
Collapse
|
43
|
Ambrosio F, Pasquarello A. Reactivity and energy level of a localized hole in liquid water. Phys Chem Chem Phys 2018; 20:30281-30289. [DOI: 10.1039/c8cp03682a] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Reaction and redox level of hole capture in liquid water from first principles.
Collapse
Affiliation(s)
- Francesco Ambrosio
- Chaire de Simulation à l’Echelle Atomique (CSEA)
- Ecole Polytechnique Fédérale de Lausanne (EPFL)
- CH-1015 Lausanne
- Switzerland
| | - Alfredo Pasquarello
- Chaire de Simulation à l’Echelle Atomique (CSEA)
- Ecole Polytechnique Fédérale de Lausanne (EPFL)
- CH-1015 Lausanne
- Switzerland
| |
Collapse
|
44
|
Suwannakham P, Chaiwongwattana S, Sagarik K. Mechanisms of photoexcitation and photoionization in small water clusters. RSC Adv 2018; 8:36731-36744. [PMID: 35558945 PMCID: PMC9089274 DOI: 10.1039/c8ra06095a] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2018] [Accepted: 10/23/2018] [Indexed: 11/21/2022] Open
Abstract
The S0 → S1 excitation leads to strong polarization and formation of [(H2O)2]+˙ from which both photoexcited and photoionized products are generated.
Collapse
Affiliation(s)
- Parichart Suwannakham
- School of Chemistry
- Institute of Science
- Suranaree University of Technology
- Nakhon Ratchasima 30000
- Thailand
| | - Sermsiri Chaiwongwattana
- School of Chemistry
- Institute of Science
- Suranaree University of Technology
- Nakhon Ratchasima 30000
- Thailand
| | - Kritsana Sagarik
- School of Chemistry
- Institute of Science
- Suranaree University of Technology
- Nakhon Ratchasima 30000
- Thailand
| |
Collapse
|
45
|
|
46
|
Ambrosio F, Miceli G, Pasquarello A. Electronic Levels of Excess Electrons in Liquid Water. J Phys Chem Lett 2017; 8:2055-2059. [PMID: 28407469 DOI: 10.1021/acs.jpclett.7b00699] [Citation(s) in RCA: 57] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
We provide a consistent description of the electronic levels associated with localized and delocalized excess electrons in liquid water by combining hybrid-functional molecular dynamics simulations with a grand canonical formulation of solutes in aqueous solution. The excess electron localizes in a cavity with an average radius of 1.8 Å and a majority coordination of five water molecules. The vertical binding energy, the optical s-p transitions, and the adiabatic redox level are found to agree closely with their experimental counterparts. The energy level associated with electron delocalization V0 is inferred to lie at -0.97 eV with respect to the vacuum level.
Collapse
Affiliation(s)
- Francesco Ambrosio
- Chaire de Simulation à l'Echelle Atomique (CSEA), Ecole Polytechnique Fédérale de Lausanne (EPFL) , CH-1015 Lausanne, Switzerland
| | - Giacomo Miceli
- Chaire de Simulation à l'Echelle Atomique (CSEA), Ecole Polytechnique Fédérale de Lausanne (EPFL) , CH-1015 Lausanne, Switzerland
| | - Alfredo Pasquarello
- Chaire de Simulation à l'Echelle Atomique (CSEA), Ecole Polytechnique Fédérale de Lausanne (EPFL) , CH-1015 Lausanne, Switzerland
| |
Collapse
|
47
|
Wang F, Schmidhammer U, de La Lande A, Mostafavi M. Ultra-fast charge migration competes with proton transfer in the early chemistry of H2O˙+. Phys Chem Chem Phys 2017; 19:2894-2899. [DOI: 10.1039/c6cp07013b] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Oxidation by the ultra-short lived radical cation of water, H2O˙+, can potentially take place at the interface of water and numerous heterogeneous systems involved in radiation therapy, energy and environmental industries.
Collapse
Affiliation(s)
- Furong Wang
- Laboratoire de Chimie Physique
- CNRS-Université Pari-Sud
- Orsay
- France
| | - Uli Schmidhammer
- Laboratoire de Chimie Physique
- CNRS-Université Pari-Sud
- Orsay
- France
| | | | - Mehran Mostafavi
- Laboratoire de Chimie Physique
- CNRS-Université Pari-Sud
- Orsay
- France
| |
Collapse
|
48
|
Herr JD, Steele RP. Signatures of Size-Dependent Structural Patterns in Hydrated Copper(I) Clusters, Cu +(H 2O) n=1-10. J Phys Chem A 2016; 120:10252-10263. [PMID: 27981838 DOI: 10.1021/acs.jpca.6b10346] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
The isomers of a hydrated Cu(I) ion with n = 1-10 water molecules were investigated by using ab initio quantum chemistry and an automated isomer-search algorithm. The electronic structure and vibrational spectra of the hundreds of resulting isomers were used to analyze the source of the observed bonding patterns. A structural evolution from dominantly two-coordinate structures (n = 1-4) toward a mixture of two- and three-coordinate structures was observed at n = 5-6, where the stability provided by expanded hydrogen-bonding was competitive with the dominantly electrostatic interaction between the water ligand and remaining binding sites of the metal ion. Further hydration (n = 7-10) led to a mixture of three- and four-coordinate structures. The metal ion was found, through spectroscopic signatures, to appreciably perturb the O-H bonds of even third-shell water molecules, which highlighted the ability of this nominally simple ion to partially activate the surrounding water network.
Collapse
Affiliation(s)
- Jonathan D Herr
- Department of Chemistry, University of Utah , 315 South 1400 East, Salt Lake City, Utah 84112, United States and.,Henry Eyring Center for Theoretical Chemistry, University of Utah , 315 South 1400 East, Salt Lake City, Utah 84112, United States
| | - Ryan P Steele
- Department of Chemistry, University of Utah , 315 South 1400 East, Salt Lake City, Utah 84112, United States and.,Henry Eyring Center for Theoretical Chemistry, University of Utah , 315 South 1400 East, Salt Lake City, Utah 84112, United States
| |
Collapse
|
49
|
Affiliation(s)
- Daniel M. Chipman
- Radiation Laboratory, University of Notre Dame, Notre
Dame, Indiana 46556-5674, United States
| |
Collapse
|
50
|
Talbot JJ, Cheng X, Herr JD, Steele RP. Vibrational Signatures of Electronic Properties in Oxidized Water: Unraveling the Anomalous Spectrum of the Water Dimer Cation. J Am Chem Soc 2016; 138:11936-45. [DOI: 10.1021/jacs.6b07182] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Justin J. Talbot
- Department
of Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112, United States
- Henry
Eyring Center for Theoretical Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112, United States
| | - Xiaolu Cheng
- Department
of Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112, United States
- Henry
Eyring Center for Theoretical Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112, United States
| | - Jonathan D. Herr
- Department
of Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112, United States
- Henry
Eyring Center for Theoretical Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112, United States
| | - Ryan P. Steele
- Department
of Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112, United States
- Henry
Eyring Center for Theoretical Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112, United States
| |
Collapse
|