1
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Nemirovich T, Young B, Brezina K, Mason PE, Seidel R, Stemer D, Winter B, Jungwirth P, Bradforth SE, Schewe HC. Stability and Reactivity of Aromatic Radical Anions in Solution with Relevance to Birch Reduction. J Am Chem Soc 2024; 146:8043-8057. [PMID: 38363862 PMCID: PMC10979400 DOI: 10.1021/jacs.3c11655] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2023] [Revised: 01/17/2024] [Accepted: 01/18/2024] [Indexed: 02/18/2024]
Abstract
We investigate the electronic structure of aromatic radical anions in the solution phase employing a combination of liquid-jet (LJ) photoelectron (PE) spectroscopy measurements and electronic structure calculations. By using recently developed protocols, we accurately determine the vertical ionization energies of valence electrons of both the solvent and the solute molecules. In particular, we first characterize the pure solvent of tetrahydrofuran (THF) by LJ-PE measurements in conjunction with ab initio molecular dynamics simulations and G0W0 calculations. Next, we determine the electronic structure of neutral naphthalene (Np) and benzophenone (Bp) as well as their radical anion counterparts Np- and Bp- in THF. Wherever feasible, we performed orbital assignments of the measured PE features of the aromatic radical anions, with comparisons to UV-vis absorption spectra of the corresponding neutral molecules being instrumental in rationalizing the assignments. Analysis of the electronic structure differences between the neutral species and their anionic counterparts provides understanding of the primarily electrostatic stabilization of the radical anions in solution. Finally, we obtain a very good agreement of the reduction potentials extracted from the present LJ-PES measurements of Np- and Bp- in THF with previous electrochemical data from cyclic voltammetry measurements. In this context, we discuss how the choice of solvent holds significant implications for optimizing conditions for the Birch reduction process, wherein aromatic radical anions play crucial roles as reactive intermediates.
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Affiliation(s)
- Tatiana Nemirovich
- Institute
of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo nám. 2, 166 10 Prague 6, Czech Republic
| | - Brandon Young
- Department
of Chemistry, University of Southern California, Los Angeles, California 90089, United States
| | - Krystof Brezina
- Institute
of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo nám. 2, 166 10 Prague 6, Czech Republic
| | - Philip E. Mason
- Institute
of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo nám. 2, 166 10 Prague 6, Czech Republic
| | - Robert Seidel
- Helmholtz-Zentrum
Berlin für Materialien und Energie, Hahn-Meitner-Platz 1, 14109 Berlin, Germany
| | - Dominik Stemer
- Fritz-Haber-Institut
der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195 Berlin, Germany
| | - Bernd Winter
- Fritz-Haber-Institut
der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195 Berlin, Germany
| | - Pavel Jungwirth
- Institute
of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo nám. 2, 166 10 Prague 6, Czech Republic
| | - Stephen E. Bradforth
- Department
of Chemistry, University of Southern California, Los Angeles, California 90089, United States
| | - H. Christian Schewe
- Institute
of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo nám. 2, 166 10 Prague 6, Czech Republic
- J.
Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, 18223 Prague, Czech
Republic
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2
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Bourgalais J, Mercier X, Al-Mogren MM, Hochlaf M. Accurate Prediction of Adiabatic Ionization Energies for PAHs and Substituted Analogues. J Phys Chem A 2023; 127:8447-8458. [PMID: 37773010 DOI: 10.1021/acs.jpca.3c04088] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/30/2023]
Abstract
The accurate calculation of adiabatic ionization energies (AIEs) for polycyclic aromatic hydrocarbons (PAHs) and their substituted analogues is essential for understanding their electronic properties, reactivity, stability, and environmental/health implications. This study demonstrates that the M06-2X density functional theory method excels in predicting the AIEs of polycyclic aromatic hydrocarbons and related molecules, rivaling the (R)CCSD(T)-F12 method in terms of accuracy. These findings suggest that M06-2X, coupled with an appropriate basis set, represents a reliable and efficient method for studying polycyclic aromatic hydrocarbons and related molecules, aligning well with the experimental techniques. The set of molecules examined in this work encompasses numerous polycyclic aromatic hydrocarbons from m/z 67 up to m/z 1,176, containing heteroatoms that may be found in biofuels or nucleic acid bases, making the results highly relevant for photoionization experiments and mass spectrometry. For coronene-derivative molecular species with the C6n2H6n chemical formula, we give an expression to predict their AIEs (AIE (n) = 4.359 + 4.8743n-0.72057, in eV) upon extending the π-aromatic cloud until reaching graphene. In the long term, the application of this method is anticipated to contribute to a deeper understanding of the relationships between PAHs and graphene, guiding research in materials science and electronic applications and serving as a valuable tool for validating theoretical calculation methods.
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Affiliation(s)
| | | | - Muneerah Mogren Al-Mogren
- Department of Chemistry, College of Sciences, King Saud University, P.O. Box 2455, Riyadh 11451, Saudi Arabia
| | - Majdi Hochlaf
- Université Gustave Eiffel, COSYS/IMSE, 77454 Champs sur Marne, France
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3
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Du H, Xue R, Xu X, Sun C, Zhang W, Fang WH, Men Z. Cationic complex-enhanced C-H stimulated Raman scattering in naphthalene-benzene solution. OPTICS LETTERS 2023; 48:4149-4152. [PMID: 37527140 DOI: 10.1364/ol.495739] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2023] [Accepted: 07/09/2023] [Indexed: 08/03/2023]
Abstract
Ring skeleton vibrations of aromatic series are dominant in Raman spectroscopy compared with the C-H stretching vibrations. When a laser-induced plasma (LIP) was generated in a mixed solution of naphthalene and benzene, an anomalous enhancement was observed in stimulated Raman scattering (SRS) of aromatic C-H stretching vibrations of naphthalene (3055 cm-1). However, SRS of C-H stretching vibrations of benzene at 3060 cm-1 disappeared. The LIP produced electrons and cations, and the transient production of ionized material contributed to the enhancement of SRS of C-H vibrations of naphthalene. Density functional theory calculations showed that the C-H Raman activity of the naphthalene molecules in (naphthalene-benzene)+ heterodimer was significantly enhanced compared with neutral naphthalene. In addition, SRS pulse durations were better compressed in pure benzene and naphthalene due to the self-focusing effect.
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4
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Lee JWL, Stockett MH, Ashworth EK, Navarro Navarrete JE, Gougoula E, Garg D, Ji M, Zhu B, Indrajith S, Zettergren H, Schmidt HT, Bull JN. Cooling dynamics of energized naphthalene and azulene radical cations. J Chem Phys 2023; 158:2887564. [PMID: 37125715 DOI: 10.1063/5.0147456] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2023] [Accepted: 04/12/2023] [Indexed: 05/02/2023] Open
Abstract
Naphthalene and azulene are isomeric polycyclic aromatic hydrocarbons (PAHs) and are topical in the context of astrochemistry due to the recent discovery of substituted naphthalenes in the Taurus Molecular Cloud-1 (TMC-1). Here, the thermal- and photo-induced isomerization, dissociation, and radiative cooling dynamics of energized (vibrationally hot) naphthalene (Np+) and azulene (Az+) radical cations, occurring over the microsecond to seconds timescale, are investigated using a cryogenic electrostatic ion storage ring, affording "molecular cloud in a box" conditions. Measurement of the cooling dynamics and kinetic energy release distributions for neutrals formed through dissociation, until several seconds after hot ion formation, are consistent with the establishment of a rapid (sub-microsecond) Np+ ⇌ Az+ quasi-equilibrium. Consequently, dissociation by C2H2-elimination proceeds predominantly through common Az+ decomposition pathways. Simulation of the isomerization, dissociation, recurrent fluorescence, and infrared cooling dynamics using a coupled master equation combined with high-level potential energy surface calculations [CCSD(T)/cc-pVTZ], reproduce the trends in the measurements. The data show that radiative cooling via recurrent fluorescence, predominately through the Np+ D0 ← D2 transition, efficiently quenches dissociation for vibrational energies up to ≈1 eV above dissociation thresholds. Our measurements support the suggestion that small cations, such as naphthalene, may be more abundant in space than previously thought. The strategy presented in this work could be extended to fingerprint the cooling dynamics of other PAH ions for which isomerization is predicted to precede dissociation.
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Affiliation(s)
- Jason W L Lee
- Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany
| | - Mark H Stockett
- Department of Physics, Stockholm University, SE-10691 Stockholm, Sweden
| | - Eleanor K Ashworth
- School of Chemistry, Norwich Research Park, University of East Anglia, Norwich NR4 7TJ, United Kingdom
| | | | - Eva Gougoula
- Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany
| | - Diksha Garg
- Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany
| | - MingChao Ji
- Department of Physics, Stockholm University, SE-10691 Stockholm, Sweden
| | - Boxing Zhu
- Department of Physics, Stockholm University, SE-10691 Stockholm, Sweden
| | | | | | - Henning T Schmidt
- Department of Physics, Stockholm University, SE-10691 Stockholm, Sweden
| | - James N Bull
- School of Chemistry, Norwich Research Park, University of East Anglia, Norwich NR4 7TJ, United Kingdom
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5
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Jacovella U, Rossi C, Romanzin C, Alcaraz C, Thissen R. Monitoring the Light-induced Isomerisation of the Prototypical Polycyclic Aromatic Hydrocarbons C 10 H 8 + through Ion-Molecule Reactions. Chemphyschem 2023; 24:e202200474. [PMID: 36125423 PMCID: PMC10092717 DOI: 10.1002/cphc.202200474] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2022] [Revised: 09/20/2022] [Indexed: 01/20/2023]
Abstract
Structural rearrangements in ions are essential for understanding the composition and evolution of energetic and chemically active environments. This study explores the interconversion routes for simple polycyclic aromatic hydrocarbons, namely naphthalene and azulene radical cations (C10 H8 + ), by combining mass spectrometry and vacuum ultraviolet tunable synchrotron radiation through the chemical monitoring technique. Products of ion-molecule reactions are used to probe C10 H8 + structures that are formed as a function of their internal energies. Isomerisation from azulene radical cation towards naphthalene radical cation in a timescale faster than 80 μs was monitored, whereas no reverse isomerisation was observed in the same time window. When energising C10 H8 + with more than 6 eV, the reactivity of C10 H8 + unveils the formation of a new isomeric group with a contrasted reactivity compared with naphthalene and azulene cations. We tentatively assigned these structures to phenylvinylacetylene cations.
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Affiliation(s)
- Ugo Jacovella
- Université Paris-Saclay, CNRS, Institut des Sciences Moléculaires d'Orsay, 91405, Orsay, France
| | - Corentin Rossi
- Université Paris-Saclay, CNRS, Institut de Chimie Physique, UMR8000, 91405, Orsay, France
| | - Claire Romanzin
- Université Paris-Saclay, CNRS, Institut de Chimie Physique, UMR8000, 91405, Orsay, France.,Synchrotron SOLEIL, L'Orme des Merisiers, 91192, Saint Aubin, Gif-sur-Yvette, France
| | - Christian Alcaraz
- Université Paris-Saclay, CNRS, Institut de Chimie Physique, UMR8000, 91405, Orsay, France.,Synchrotron SOLEIL, L'Orme des Merisiers, 91192, Saint Aubin, Gif-sur-Yvette, France
| | - Roland Thissen
- Université Paris-Saclay, CNRS, Institut de Chimie Physique, UMR8000, 91405, Orsay, France.,Synchrotron SOLEIL, L'Orme des Merisiers, 91192, Saint Aubin, Gif-sur-Yvette, France
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6
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Windom ZW, Perera A, Bartlett RJ. Examining fundamental and excitation gaps at the thermodynamic limit: A combined (QTP) DFT and coupled cluster study on trans-polyacetylene and polyacene. J Chem Phys 2022; 156:204308. [DOI: 10.1063/5.0086158] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Interest in ab initio property prediction of π-conjugated polymers for technological applications places significant demand on “cost-effective” and conceptual computational methods, particularly effective, one-particle theories. This is particularly relevant in the case of Kohn–Sham Density Functional Theory (KS-DFT) and its new competitors that arise from correlated orbital theory, the latter defining the QTP family of DFT functionals. This study presents large, ab initio equation of motion-coupled cluster calculations using the massively parallel ACESIII to target the fundamental bandgap of two prototypical organic polymers, trans-polyacetylene (tPA) and polyacene (Ac), and provides an assessment of the new quantum theory project (QTP) functionals for this problem. Further results focusing on the 1 A g (1 A g), 1 B u (1 B2 u), and 3 B u (3 B2 u) excited states of tPA (Ac) are also presented. By performing calculations on oligomers of increasing size, extrapolations to the thermodynamic limit for the fundamental and all excitation gaps, as well as estimations of the exciton binding energy, are made. Thermodynamic-limit results for a combination of “optimal” and model geometries are presented. Calculated results for excitations that are adequately described using a single-particle model illustrate the benefits of requiring a KS-DFT functional to satisfy the Bartlett ionization potential theorem.
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Affiliation(s)
- Zachary W. Windom
- Quantum Theory Project, University of Florida, Gainesville, Florida 32611-8435, USA
| | - Ajith Perera
- Quantum Theory Project, University of Florida, Gainesville, Florida 32611-8435, USA
| | - Rodney J. Bartlett
- Quantum Theory Project, University of Florida, Gainesville, Florida 32611-8435, USA
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7
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Kaiser RI, Zhao L, Lu W, Ahmed M, Zagidullin MV, Azyazov VN, Mebel AM. Formation of Benzene and Naphthalene through Cyclopentadienyl-Mediated Radical-Radical Reactions. J Phys Chem Lett 2022; 13:208-213. [PMID: 34967648 DOI: 10.1021/acs.jpclett.1c03733] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Resonantly stabilized free radicals (RSFRs) have been contemplated as fundamental molecular building blocks and reactive intermediates in molecular mass growth processes leading to polycyclic aromatic hydrocarbons (PAHs) and carbonaceous nanoparticles on Earth and in deep space. By combining molecular beams and computational fluid dynamics simulations, we provide compelling evidence on the formation of benzene via the cyclopentadienyl-methyl reaction and of naphthalene through the cyclopentadienyl self-reaction, respectively. These systems offer benchmarks for the conversion of a five-membered ring to the 6π-aromatic (benzene) and the generation of the simplest 10π-PAH (naphthalene) at elevated temperatures. These results uncover molecular mass growth processes from the "bottom up" via RSFRs in high temperature circumstellar environments and combustion systems expanding our fundamental knowledge of the organic, hydrocarbon chemistry in our universe.
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Affiliation(s)
- Ralf I Kaiser
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
| | - Long Zhao
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
| | - Wenchao Lu
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Musahid Ahmed
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Marsel V Zagidullin
- Lebedev Physical Institute, Samara Branch, Samara 443011, Russian Federation
| | - Valeriy N Azyazov
- Lebedev Physical Institute, Samara Branch, Samara 443011, Russian Federation
| | - Alexander M Mebel
- Department of Chemistry and Biochemistry, Florida International University, Miami, Florida 33199, United States
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8
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Chatterjee K, Roy TK, Khatri J, Schwaab G, Havenith M. Unravelling the microhydration frameworks of prototype PAH by infrared spectroscopy: naphthalene–(water)1–3. Phys Chem Chem Phys 2021; 23:14016-14026. [DOI: 10.1039/d1cp01789f] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Microhydration structures of the prototypical PAH, naphthalene, are probed by IR spectroscopy in helium droplets. The sequential water addition produces an extended hydrogen-bonded hydration network bound via π hydrogen bond to the aromatic ring.
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Affiliation(s)
- Kuntal Chatterjee
- Lehrstuhl für Physikalische Chemie II, Ruhr-Universität Bochum
- Bochum
- Germany
| | - Tarun Kumar Roy
- Lehrstuhl für Physikalische Chemie II, Ruhr-Universität Bochum
- Bochum
- Germany
| | - Jai Khatri
- Lehrstuhl für Physikalische Chemie II, Ruhr-Universität Bochum
- Bochum
- Germany
| | - Gerhard Schwaab
- Lehrstuhl für Physikalische Chemie II, Ruhr-Universität Bochum
- Bochum
- Germany
| | - Martina Havenith
- Lehrstuhl für Physikalische Chemie II, Ruhr-Universität Bochum
- Bochum
- Germany
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9
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Arlt J, Singh DP, Thompson JOF, Chatterley AS, Hockett P, Stapelfeldt H, Reid KL. Photoelectron angular distributions from resonant two-photon ionisation of adiabatically aligned naphthalene and aniline molecules. Mol Phys 2020. [DOI: 10.1080/00268976.2020.1836411] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Affiliation(s)
- Jacqueline Arlt
- Department of Chemistry, Aarhus University, Aarhus C, Denmark
| | | | | | | | - Paul Hockett
- Steacie Institute for Molecular Science, National Research Council of Canada, Ottawa, Canada
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10
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Sattasathuchana T, Siegel JS, Baldridge KK. Generalized Analytic Approach for Determination of Multidimensional Franck-Condon Factors: Simulated Photoelectron Spectra of Polynuclear Aromatic Hydrocarbons. J Chem Theory Comput 2020; 16:4521-4532. [PMID: 32589421 DOI: 10.1021/acs.jctc.0c00274] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
An enhanced generalized analytic approach for determination of multidimensional Franck-Condon Factors (FCFs) enables efficient computational prediction of photoelectron spectra for large-dimensional systems. Incorporation of the automated assignment of Cartesian coordinate handedness and coordinate superposition between the ground and excited electronic states satisfies the Eckart conditions and allows evaluation of the Duschinsky effect. The model shows excellent agreement with experiments for the determination of FCFs and photoelectron spectra of a series of increasing dimensions polynuclear hydrocarbons (PAHs), including naphthalene, anthracene, phenanthrene, and pyrene. In addition, a high-resolution prediction of the PES for the 84-dimensional PAH corannulene provides motivation for an additional experimental study. For FCFs, coordinate transformation between the initial and final states rather than the dimension of the systems more greatly influences the complexity of the spectral band shapes.
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Affiliation(s)
| | - Jay S Siegel
- Health Sciences Platform, Tianjin University, 92 Weijin Road, Nankai District, Tianjin 3000072, P. R. China
| | - Kim K Baldridge
- Health Sciences Platform, Tianjin University, 92 Weijin Road, Nankai District, Tianjin 3000072, P. R. China
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11
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Vinitha M, Nair AM, Kumar AS, Blanchet V, Kadhane UR. Isomerization and dehydrogenation of highly vibrationally excited azulene+ produced via S2 vibrational manifold. Chem Phys Lett 2020. [DOI: 10.1016/j.cplett.2020.137250] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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12
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Chatterjee K, Dopfer O. Protonation of Naphthalene–(Water)n Nanoclusters: Intracluster Proton Transfer to Hydration Shell Revealed by Infrared Photodissociation Spectroscopy. J Phys Chem A 2020; 124:1134-1151. [DOI: 10.1021/acs.jpca.9b11779] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Kuntal Chatterjee
- Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstrasse 36, 10623 Berlin, Germany
| | - Otto Dopfer
- Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstrasse 36, 10623 Berlin, Germany
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13
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Abplanalp MJ, Frigge R, Kaiser RI. Low-temperature synthesis of polycyclic aromatic hydrocarbons in Titan's surface ices and on airless bodies. SCIENCE ADVANCES 2019; 5:eaaw5841. [PMID: 31663015 PMCID: PMC6795510 DOI: 10.1126/sciadv.aaw5841] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/07/2019] [Accepted: 09/22/2019] [Indexed: 06/10/2023]
Abstract
Titan's equatorial dunes represent the most monumental surface structures in our Solar System, but the chemical composition of their dark organics remains a fundamental, unsolved enigma, with solid acetylene detected near the dunes implicated as a key feedstock. Here, we reveal in laboratory simulation experiments that aromatics such as benzene, naphthalene, and phenanthrene-prospective building blocks of the organic dune material-can be efficiently synthesized via galactic cosmic ray exposure of low-temperature acetylene ices on Titan's surface, hence challenging conventional wisdom that aromatic hydrocarbons are formed solely in Titan's atmosphere. These processes are also of critical importance in unraveling the origin and chemical composition of the dark surfaces of airless bodies in the outer Solar System, where hydrocarbon precipitation from the atmosphere cannot occur. This finding notably advances our understanding of the distribution of carbon throughout our Solar System such as on Kuiper belt objects like Makemake.
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Affiliation(s)
- Matthew J. Abplanalp
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
| | - Robert Frigge
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
| | - Ralf I. Kaiser
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
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14
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Son VV, Nakamura H, Imasaka T, Imasaka T. Determination of nerve agent metabolites in human urine by femtosecond laser ionization mass spectrometry using 2-(bromomethyl)naphthalene as a derivatizing reagent. Anal Chim Acta 2019; 1069:82-88. [DOI: 10.1016/j.aca.2019.04.012] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2019] [Revised: 03/22/2019] [Accepted: 04/08/2019] [Indexed: 12/01/2022]
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15
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Tzeng SY, Shivatare VS, Tzeng WB. Cation Vibrations of 1-Methylnaphthalene and 2-Methylnaphthalene through Mass-Analyzed Threshold Ionization Spectroscopy. J Phys Chem A 2019; 123:5969-5979. [PMID: 31287683 DOI: 10.1021/acs.jpca.9b03756] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Vibrationally resolved cation spectra of 1-methylnaphthalene (1MN) and 2-methylnaphthalene (2MN) were obtained using the two-color resonant two-photon mass-analyzed threshold ionization (MATI) spectroscopy. MATI spectra were obtained through ionization via several intermediate vibronic levels. Due to hindrance effect, no spectral features related to methyl torsion were observed in the MATI spectra of 1MN. By contrast, most of the in-plane ring deformation vibrations of the 2MN cation were found to couple with methyl torsion because of its small internal rotational barrier. These experimental findings were well supported by our theoretical calculations.
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Affiliation(s)
- Sheng Yuan Tzeng
- Institute of Atomic and Molecular Sciences , Academia Sinica , P.O. Box 23-166, 1 Section 4, Roosevelt Road , Taipei 10617 , Taiwan
| | - Vidya S Shivatare
- Institute of Atomic and Molecular Sciences , Academia Sinica , P.O. Box 23-166, 1 Section 4, Roosevelt Road , Taipei 10617 , Taiwan
| | - Wen Bih Tzeng
- Institute of Atomic and Molecular Sciences , Academia Sinica , P.O. Box 23-166, 1 Section 4, Roosevelt Road , Taipei 10617 , Taiwan
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16
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Characterized cis-Fe V(O)(OH) intermediate mimics enzymatic oxidations in the gas phase. Nat Commun 2019; 10:901. [PMID: 30796210 PMCID: PMC6385299 DOI: 10.1038/s41467-019-08668-2] [Citation(s) in RCA: 39] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2018] [Accepted: 01/16/2019] [Indexed: 02/04/2023] Open
Abstract
FeV(O)(OH) species have long been proposed to play a key role in a wide range of biomimetic and enzymatic oxidations, including as intermediates in arene dihydroxylation catalyzed by Rieske oxygenases. However, the inability to accumulate these intermediates in solution has thus far prevented their spectroscopic and chemical characterization. Thus, we use gas-phase ion spectroscopy and reactivity analysis to characterize the highly reactive [FeV(O)(OH)(5tips3tpa)]2+ (32+) complex. The results show that 32+ hydroxylates C–H bonds via a rebound mechanism involving two different ligands at the Fe center and dihydroxylates olefins and arenes. Hence, this study provides a direct evidence of FeV(O)(OH) species in non-heme iron catalysis. Furthermore, the reactivity of 32+ accounts for the unique behavior of Rieske oxygenases. The use of gas-phase ion characterization allows us to address issues related to highly reactive intermediates that other methods are unable to solve in the context of catalysis and enzymology. FeV(O)(OH) species have long been thought to play a role in a range of enzymatic oxidations, but their characterization has remained elusive. Here, using gas-phase ion spectroscopy, the authors characterize an FeV(O)(OH) species and find that its reactivity mimics that of Rieske oxygenases.
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17
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Chatterjee K, Dopfer O. Microhydration of PAH + cations: evolution of hydration network in naphthalene +-(H 2O) n clusters ( n ≤ 5). Chem Sci 2018; 9:2301-2318. [PMID: 29719704 PMCID: PMC5903421 DOI: 10.1039/c7sc05124g] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2017] [Accepted: 01/24/2018] [Indexed: 12/15/2022] Open
Abstract
The interaction of polycyclic aromatic hydrocarbon molecules with water (H2O = W) is of fundamental importance in chemistry and biology. Herein, size-selected microhydrated naphthalene cation nanoclusters, Np+-W n (n ≤ 5), are characterized by infrared photodissociation (IRPD) spectroscopy in the C-H and O-H stretch range to follow the stepwise evolution of the hydration network around this prototypical PAH+ cation. The IRPD spectra are highly sensitive to the hydration structure and are analyzed by dispersion-corrected density functional theory calculations (B3LYP-D3/aug-cc-pVTZ) to determine the predominant structural isomers. For n = 1, W forms a bifurcated CH···O ionic hydrogen bond (H-bond) to two acidic CH protons of the bicyclic ring. For n ≥ 2, the formation of H-bonded solvent networks dominates over interior ion solvation, because of strong cooperativity in the former case. For n ≥ 3, cyclic W n solvent structures are attached to the CH protons of Np+. However, while for n = 3 the W3 ring binds in the CH···O plane to Np+, for n ≥ 4 the cyclic W n clusters are additionally stabilized by stacking interactions, leading to sandwich-type configurations. No intracluster proton transfer from Np+ to the W n solvent is observed in the studied size range (n ≤ 5), because of the high proton affinity of the naphthyl radical compared to W n . This is different from microhydrated benzene+ clusters, (Bz-W n )+, for which proton transfer is energetically favorable for n ≥ 4 due to the much lower proton affinity of the phenyl radical. Hence, because of the presence of polycyclic rings, the interaction of PAH+ cations with W is qualitatively different from that of monocyclic Bz+ with respect to interaction strength, structure of the hydration shell, and chemical reactivity. These differences are rationalized and quantified by quantum chemical analysis using the natural bond orbital (NBO) and noncovalent interaction (NCI) approaches.
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Affiliation(s)
- Kuntal Chatterjee
- Institut für Optik und Atomare Physik , Technische Universität Berlin , Hardenbergstr. 36 , 10623 Berlin , Germany . ; Tel: +49 30 31423018
| | - Otto Dopfer
- Institut für Optik und Atomare Physik , Technische Universität Berlin , Hardenbergstr. 36 , 10623 Berlin , Germany . ; Tel: +49 30 31423018
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18
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Yonehara T, Nakajima T. A quantum dynamics method for excited electrons in molecular aggregate system using a group diabatic Fock matrix. J Chem Phys 2017; 147:074110. [PMID: 28830170 DOI: 10.1063/1.4998746] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We introduce a practical calculation scheme for the description of excited electron dynamics in molecular aggregate systems within a local group diabatic Fock representation. This scheme makes it easy to analyze the interacting time-dependent excitation of local sites in complex systems. In addition, light-electron couplings are considered. The present scheme is intended for investigations on the migration dynamics of excited electrons in light-induced energy transfer systems. The scheme was applied to two systems: a naphthalene-tetracyanoethylene dimer and a 20-mer circle of ethylene molecules. Through local group analyses of the dynamical electrons, we obtained an intuitive understanding of the electron transfers between the monomers.
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Affiliation(s)
- Takehiro Yonehara
- RIKEN Advanced Institute for Computational Science, Kobe 650-0047, Japan
| | - Takahito Nakajima
- RIKEN Advanced Institute for Computational Science, Kobe 650-0047, Japan
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19
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Kawashima Y, Hirao K. Singularity Correction for Long-Range-Corrected Density Functional Theory with Plane-Wave Basis Sets. J Phys Chem A 2017; 121:2035-2045. [PMID: 28199126 DOI: 10.1021/acs.jpca.7b00162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We introduced two methods to correct the singularity in the calculation of long-range Hartree-Fock (HF) exchange for long-range-corrected density functional theory (LC-DFT) calculations in plane-wave basis sets. The first method introduces an auxiliary function to cancel out the singularity. The second method introduces a truncated long-range Coulomb potential, which has no singularity. We assessed the introduced methods using the LC-BLYP functional by applying it to isolated systems of naphthalene and pyridine. We first compared the total energies and the HOMO energies of the singularity-corrected and uncorrected calculations and confirmed that singularity correction is essential for LC-DFT calculations using plane-wave basis sets. The LC-DFT calculation results converged rapidly with respect to the cell size as the other functionals, and their results were in good agreement with the calculated results obtained using Gaussian basis sets. LC-DFT succeeded in obtaining accurate orbital energies and excitation energies. We next applied LC-DFT with singularity correction methods to the electronic structure calculations of the extended systems, Si and SiC. We confirmed that singularity correction is important for calculations of extended systems as well. The calculation results of the valence and conduction bands by LC-BLYP showed good convergence with respect to the number of k points sampled. The introduced methods succeeded in overcoming the singularity problem in HF exchange calculation. We investigated the effect of the singularity correction on the excitation state calculation and found that careful treatment of the singularities is required compared to ground-state calculations. We finally examined the excitonic effect on the band gap of the extended systems. We calculated the excitation energies to the first excited state of the extended systems using a supercell model at the Γ point and found that the excitonic binding energy, supposed to be small for inorganic semiconductors, was quite large. Our findings suggest that more investigation on the effect of the excitonic binding energy on band gaps is necessary.
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Affiliation(s)
- Yukio Kawashima
- RIKEN Advanced Institute for Computational Science , 7-1-26 minatojima-minami-machi, Chuo-ku, Kobe 650-0047, Japan
| | - Kimihiko Hirao
- RIKEN Advanced Institute for Computational Science , 7-1-26 minatojima-minami-machi, Chuo-ku, Kobe 650-0047, Japan
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20
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Chatterjee K, Dopfer O. Infrared spectroscopy of hydrated polycyclic aromatic hydrocarbon cations: naphthalene+–water. Phys Chem Chem Phys 2017; 19:32262-32271. [DOI: 10.1039/c7cp06893j] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The combination of infrared spectroscopy and quantum chemical calculations unravels the salient properties of the bifurcated CH⋯O ionic hydrogen bond typical for the PAH+–H2O interaction.
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Affiliation(s)
- Kuntal Chatterjee
- Institut für Optik und Atomare Physik
- Technische Universität Berlin
- 10623 Berlin
- Germany
| | - Otto Dopfer
- Institut für Optik und Atomare Physik
- Technische Universität Berlin
- 10623 Berlin
- Germany
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21
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Yang T, Troy TP, Xu B, Kostko O, Ahmed M, Mebel AM, Kaiser RI. Hydrogen-Abstraction/Acetylene-Addition Exposed. Angew Chem Int Ed Engl 2016; 55:14983-14987. [PMID: 27781351 DOI: 10.1002/anie.201607509] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2016] [Revised: 10/07/2016] [Indexed: 11/08/2022]
Abstract
Polycyclic aromatic hydrocarbons (PAHs) are omnipresent in the interstellar medium (ISM) and also in carbonaceous meteorites (CM) such as Murchison. However, the basic reaction routes leading to the formation of even the simplest PAH-naphthalene (C10 H8 )-via the hydrogen-abstraction/acetylene-addition (HACA) mechanism still remain ambiguous. Here, by revealing the uncharted fundamental chemistry of the styrenyl (C8 H7 ) and the ortho-vinylphenyl radicals (C8 H7 )-key transient species of the HACA mechanism-with acetylene (C2 H2 ), we provide the first solid experimental evidence on the facile formation of naphthalene in a simulated combustion environment validating the previously postulated HACA mechanism for these two radicals. This study highlights, at the molecular level spanning combustion and astrochemistry, the importance of the HACA mechanism to the formation of the prototype PAH naphthalene.
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Affiliation(s)
- Tao Yang
- Department of Chemistry, University of Hawai'i at Manoa, Honolulu, HI, 96822, USA
| | - Tyler P Troy
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Bo Xu
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Oleg Kostko
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Musahid Ahmed
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Alexander M Mebel
- Department of Chemistry and Biochemistry, Florida International University, Miami, FL, 33199, USA
| | - Ralf I Kaiser
- Department of Chemistry, University of Hawai'i at Manoa, Honolulu, HI, 96822, USA
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22
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Yang T, Troy TP, Xu B, Kostko O, Ahmed M, Mebel AM, Kaiser RI. Hydrogen-Abstraction/Acetylene-Addition Exposed. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201607509] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Tao Yang
- Department of Chemistry; University of Hawai'i at Manoa; Honolulu HI 96822 USA
| | - Tyler P. Troy
- Chemical Sciences Division; Lawrence Berkeley National Laboratory; Berkeley CA 94720 USA
| | - Bo Xu
- Chemical Sciences Division; Lawrence Berkeley National Laboratory; Berkeley CA 94720 USA
| | - Oleg Kostko
- Chemical Sciences Division; Lawrence Berkeley National Laboratory; Berkeley CA 94720 USA
| | - Musahid Ahmed
- Chemical Sciences Division; Lawrence Berkeley National Laboratory; Berkeley CA 94720 USA
| | - Alexander M. Mebel
- Department of Chemistry and Biochemistry; Florida International University; Miami FL 33199 USA
| | - Ralf I. Kaiser
- Department of Chemistry; University of Hawai'i at Manoa; Honolulu HI 96822 USA
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23
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Ohnishi YY, Ten-no S. Explicitly correlated frequency-independent second-order green's function for accurate ionization energies. J Comput Chem 2016; 37:2447-53. [DOI: 10.1002/jcc.24468] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2016] [Revised: 07/14/2016] [Accepted: 07/15/2016] [Indexed: 01/06/2023]
Affiliation(s)
- Yu-ya Ohnishi
- Graduate School of System Informatics; Kobe University; Nada-Ku Kobe 657-8501 Japan
| | - Seiichiro Ten-no
- Graduate School of System Informatics; Kobe University; Nada-Ku Kobe 657-8501 Japan
- Graduate School of Science; Technology, and Innovation, Kobe University; Nada-Ku Kobe 657-8501 Japan
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24
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Shushin AI, Sakun VP. Characteristic features of the singlet–triplet mechanism of the electron spin polarization. RUSSIAN JOURNAL OF PHYSICAL CHEMISTRY B 2016. [DOI: 10.1134/s1990793116020093] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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25
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Johnson PM, Sears TJ. Photo-assisted intersystem crossing: The predominant triplet formation mechanism in some isolated polycyclic aromatic molecules excited with pulsed lasers. J Chem Phys 2015; 143:044305. [PMID: 26233127 DOI: 10.1063/1.4926925] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
Abstract
Naphthalene, anthracene, and phenanthrene are shown to have very long-lived triplet lifetimes when the isolated molecules are excited with nanosecond pulsed lasers resonant with the lowest singlet state. For naphthalene, triplet state populations are created only during the laser pulse, excluding the possibility of normal intersystem crossing at the one photon level, and all molecules have triplet lifetimes greater than hundreds of microseconds, similar to the behavior previously reported for phenylacetylene. Although containing 7-12 thousand cm(-1) of vibrational energy, the triplet molecules have ionization thresholds appropriate to vibrationless T1 states. The laser power dependences (slopes of log-log power plots) of the excited singlet and triplet populations are about 0.7 for naphthalene and about 0.5 for anthracene. Kinetic modeling of the power dependences successfully reproduces the experimental results and suggests that the triplet formation mechanism involves an enhanced spin orbit coupling caused by sigma character in states at the 2-photon level. Symmetry adapted cluster-configuration interaction calculations produced excited state absorption spectra to provide guidance for estimating kinetic rates and the sigma character present in higher electronic states. It is concluded that higher excited state populations are significant when larger molecules are excited with pulsed lasers and need to be taken into account whenever discussing the molecular photodynamics.
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Affiliation(s)
- Philip M Johnson
- Department of Chemistry, Stony Brook University, Stony Brook, New York 11794-3400, USA
| | - Trevor J Sears
- Department of Chemistry, Stony Brook University, Stony Brook, New York 11794-3400, USA
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26
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Solano EA, Mayer PM. A complete map of the ion chemistry of the naphthalene radical cation? DFT and RRKM modeling of a complex potential energy surface. J Chem Phys 2015; 143:104305. [DOI: 10.1063/1.4930000] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
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27
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Shushin AI. Radical-triplet pair mechanism of electron spin polarization. Detailed theoretical treatment. J Phys Chem A 2014; 118:11355-63. [PMID: 25383486 DOI: 10.1021/jp509199m] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
Specific features of net chemically induced dynamic electron spin polarization (CIDEP) P(n), generated in liquid-phase triplet-radical (TR) quenching, are analyzed in detail within the general model, which allows for fairly simple analysis of CIDEP both numerically and analytically. This model enables one to accurately treat nonadiabatic transitions between the terms of TR-pair spin Hamiltonian, resulting in CIDEP generation. The proposed theory predicts fairly simple analytical dependence of P(n) on parameters of the model. In particular, it is shown that within the wide region of parameters the P(n) dependence on the coefficient of relative TR diffusion D(r) is described by simple linear relation P(n)(-1)(D(r)) ≈ Q0 + q̅(n)D(r) (Q0 and q̅(n) are independent of D(r)). It is also demonstrated that obtained numerical and analytical results are very helpful for the analysis of experimental data, which is demonstrated by analyzing the experimental D(r)-dependence of P(n).
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Affiliation(s)
- A I Shushin
- Institute of Chemical Physics, Russian Academy of Sciences , GSP-1, Kosygin Street 4, 117977 Moscow, Russia
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28
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Kim J, Chung J, Hyon J, Kwon T, Seo C, Nam J, Kang Y. The synthesis of organic charge transfer hetero-microtubules by crack welding. Chem Commun (Camb) 2014; 50:10258-61. [PMID: 25054622 DOI: 10.1039/c4cc04602a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The strain-induced cracks in organic microtubules composed of an organic charge transfer (CT) complex of 1,2,4,5-tetracyanobenzene (TCNB) and naphthalene were selectively welded via the formation of secondary CT complexes; this process, in turn, led to the formation of organic hetero-microtubules consisting of multiple segments of two organic CT complexes.
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Affiliation(s)
- J Kim
- Department of Chemistry, Research Institute for Natural Sciences, Institute of Nano Science and Technology, Hanyang University, 222 Wangsimni-Ro, Seongdong-Gu, Seoul, 133-791 Korea.
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29
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Shivatare VS, Kundu A, Patwari GN, Tzeng WB. Studies of Structural Isomers o-, m-, and p-Fluorophenylacetylene by Two-Color Resonant Two-Photon Mass-Analyzed Threshold Ionization Spectroscopy. J Phys Chem A 2014; 118:8277-86. [DOI: 10.1021/jp501059c] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Vidya S. Shivatare
- Institute
of Atomic and Molecular Sciences, Academia Sinica, P.O. Box 23-166, 1 Section 4, Roosevelt Road, Taipei 10617, Taiwan
- Taiwan
International Graduate Program, Department of Chemistry, National Tsing Hua University and Academia Sinica, 128 Academia Road, Sec. 2, Nankang, Taipei 115, Taiwan
| | - Aniket Kundu
- Department
of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400 076, India
| | - G. Naresh Patwari
- Department
of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400 076, India
| | - Wen Bih Tzeng
- Institute
of Atomic and Molecular Sciences, Academia Sinica, P.O. Box 23-166, 1 Section 4, Roosevelt Road, Taipei 10617, Taiwan
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30
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Constantinidis P, Lang M, Herterich J, Fischer I, Auerswald J, Krueger A. Electronic Spectroscopy of 1-(Phenylethynyl)naphthalene. J Phys Chem A 2014; 118:2915-21. [DOI: 10.1021/jp412482p] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Philipp Constantinidis
- Institute
of Physical and Theoretical Chemistry, University of Würzburg, Am
Hubland, D-97074 Würzburg, Germany
| | - Melanie Lang
- Institute
of Physical and Theoretical Chemistry, University of Würzburg, Am
Hubland, D-97074 Würzburg, Germany
| | - Jörg Herterich
- Institute
of Physical and Theoretical Chemistry, University of Würzburg, Am
Hubland, D-97074 Würzburg, Germany
| | - Ingo Fischer
- Institute
of Physical and Theoretical Chemistry, University of Würzburg, Am
Hubland, D-97074 Würzburg, Germany
| | - Johannes Auerswald
- Institute
of Organic Chemistry, University of Würzburg, Am Hubland, D-97074 Würzburg, Germany
| | - Anke Krueger
- Institute
of Organic Chemistry, University of Würzburg, Am Hubland, D-97074 Würzburg, Germany
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31
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Huang YH, Huang WC, Tzeng WB. 4-Chloro-3-fluoroaniline studied by resonant two-photon ionization and mass-analyzed threshold ionization spectroscopy. Chem Phys Lett 2014. [DOI: 10.1016/j.cplett.2014.01.038] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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32
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Fliegl H, Sundholm D. Coupled-cluster calculations of the lowest 0–0 bands of the electronic excitation spectrum of naphthalene. Phys Chem Chem Phys 2014; 16:9859-65. [DOI: 10.1039/c3cp54421d] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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33
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Kim JB, Weichman ML, Yacovitch TI, Shih C, Neumark DM. Slow photoelectron velocity-map imaging spectroscopy of the C9H7 (indenyl) and C13H9 (fluorenyl) anions. J Chem Phys 2013; 139:104301. [DOI: 10.1063/1.4820138] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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34
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Walsh AJ, Ruth AA, Gash EW, Mansfield MWD. Multi-photon UV photolysis of gaseous polycyclic aromatic hydrocarbons: extinction spectra and dynamics. J Chem Phys 2013; 139:054304. [PMID: 23927259 DOI: 10.1063/1.4816003] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023] Open
Abstract
The extinction spectra of static naphthalene and static biphenylene vapor, each buffered with a noble gas at room temperature, were measured as a function of time in the region between 390 and 850 nm after UV multi-photon laser photolysis at 308 nm. Employing incoherent broadband cavity enhanced absorption spectroscopy (IBBCEAS), the spectra were found to be unstructured with a general lack of isolated features suggesting that the extinction was not solely based on absorption but was in fact dominated by scattering from particles formed in the photolysis of the respective polycyclic aromatic hydrocarbon. Following UV multi-photon photolysis, the extinction dynamics of the static (unstirred) closed gas-phase system exhibits extraordinary quasi-periodic and complex oscillations with periods ranging from seconds to many minutes, persisting for up to several hours. Depending on buffer gas type and pressure, several types of dynamical responses could be generated (classified as types I, II, and III). They were studied as a function of temperature and chamber volume for different experimental conditions and possible explanations for the oscillations are discussed. A conclusive model for the observed phenomena has not been established. However, a number of key hypotheses have made based on the measurements in this publication: (a) Following the multi-photon UV photolysis of naphthalene (or biphenylene), particles are formed on a timescale not observable using IBBCEAS. (b) The observed temporal behavior cannot be described on basis of a chemical reaction scheme alone. (c) The pressure dependence of the system's responses is due to transport phenomena of particles in the chamber. (d) The size distribution and the refractive indices of particles are time dependent and evolve on a timescale of minutes to hours. The rate of particle coagulation, involving coalescent growth and particle agglomeration, affects the observed oscillations. (e) The walls of the chamber act as a sink. The wall conditions (which could not be quantitatively characterized) have a profound influence on the dynamics of the system and on its slow return to an equilibrium state.
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Affiliation(s)
- A J Walsh
- Physics Department, University College Cork, Cork, Ireland
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35
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Shivatare V, Tzeng SY, Tzeng WB. Active vibrations of 1-cyanonaphthalene cation studied by mass-analyzed threshold ionization spectroscopy. Chem Phys Lett 2013. [DOI: 10.1016/j.cplett.2012.12.042] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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36
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Bahou M, Wu YJ, Lee YP. Formation and infrared absorption of protonated naphthalenes (1-C10H9+and 2-C10H9+) and their neutral counterparts in solid para-hydrogen. Phys Chem Chem Phys 2013; 15:1907-17. [DOI: 10.1039/c2cp43143b] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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37
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Auerswald J, Engels B, Fischer I, Gerbich T, Herterich J, Krueger A, Lang M, Schmitt HC, Schon C, Walter C. The electronic structure of pyracene: a spectroscopic and computational study. Phys Chem Chem Phys 2013; 15:8151-61. [DOI: 10.1039/c3cp44271c] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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38
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Honda Y, Shida T, Nakatsuji H. Excitation spectra of cation and anion radicals of several unsaturated hydrocarbons: symmetry adapted cluster-configuration interaction theoretical study. J Phys Chem A 2012; 116:11833-45. [PMID: 23153081 DOI: 10.1021/jp3051565] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Excitation spectra of cation and anion radicals of unsaturated hydrocarbons, hexatriene(±), octatetraene(±), cyclopentadiene(+), 1,3-cyclohexadiene(+), and naphthalene(±), were studied by the symmetry adapted cluster-configuration interaction (SAC-CI) method. The calculated results reasonably reproduced the experimental spectra observed by one of the authors (T.S.) and gave reasonable assignments. The two bands observed in the experimental spectra were assigned to π-π(SOMO) and π(SOMO)-π* for the cation radicals and π*(SOMO)-π* and π-π*(SOMO) for the anion radicals, in order of increasing energy, except for naphthalene(±). The four bands of naphthalene(+) originated from π-π(SOMO), π-π(SOMO), π(SOMO)-π*, and π(SOMO)-π* and those of naphthalene(-) originated from π*(SOMO)-π*, π*(SOMO)-π*, π-π*(SOMO), π*(SOMO)-vπ*, and π-π*(SOMO), in order of increasing energy. The SOMO orbitals were involved in the intense bands of both cation and anion radicals. Moreover, the ionization energies (IEs) and electron affinities (EAs) of these hydrocarbons were in good agreement with the experimental values, whereas the EAs of hexatriene and octatetraene were predicted to be negative and positive, respectively. The calculated IE + EA values were nearly constant for the three π-π* pairing states of hexatriene(±), octatetraene(±), and naphthalene(±), indicating that the pairing theorem is valid even at the SAC-CI level.
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Affiliation(s)
- Yasushi Honda
- Quantum Chemistry Research Institute, JST-CREST, Nishikyo-ku, Kyoto, Japan
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39
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West B, Joblin C, Blanchet V, Bodi A, Sztáray B, Mayer PM. On the Dissociation of the Naphthalene Radical Cation: New iPEPICO and Tandem Mass Spectrometry Results. J Phys Chem A 2012; 116:10999-1007. [DOI: 10.1021/jp3091705] [Citation(s) in RCA: 59] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Brandi West
- Chemistry Department, University of Ottawa, Ottawa, Canada
K1N 6N5
| | - Christine Joblin
- Université de Toulouse, UPS-OMP, IRAP, F-31028 Toulouse cedex 4,
France
- CNRS, IRAP, 9 Av. colonel Roche, BP 44346, F-31028 Toulouse cedex 4,
France
| | - Valerie Blanchet
- Laboratoire des
Collisions Agrégats
Réactivité, Université Toulouse-CNRS, F-31028 Toulouse cedex 4, France
| | - Andras Bodi
- Molecular Dynamics Group, Paul Scherrer Institut, Villigen 5232, Switzerland
| | - Bálint Sztáray
- Chemistry Department, University of the Pacific, Stockton,
California 95211, United States
| | - Paul M. Mayer
- Chemistry Department, University of Ottawa, Ottawa, Canada
K1N 6N5
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40
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Ostojić BD, Đorđević DS. The electronic properties of trimethylnaphthalenes as properties for the prediction of biodegradation rates: ab initio and DFT study. CHEMOSPHERE 2012; 88:91-97. [PMID: 22440638 DOI: 10.1016/j.chemosphere.2012.02.071] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2011] [Revised: 02/21/2012] [Accepted: 02/24/2012] [Indexed: 05/31/2023]
Abstract
There is little information on trimethylnaphthalenes (TMNs) which are constituents of diesel fuel and bitumen emissions. In this study, a theoretical investigation of the electronic properties of all trimethylnaphthalene (TMN) isomers and their relation to biodegradation are presented. Equilibrium geometries, ionization potentials (IPs), electron affinities (EAs), dipole moments and electronic dipole polarizabilities of TMN isomers calculated by ab initio and Density Functional Theory (DFT) methods are reported. Polarizability and dipole moment computations have been performed in gas and in water solution using the polarizable continuum model (PCM). The results obtained show that the IP value varies little along the series of isomers while averaged static dipole polarizabilities (<α>) increase on passing from α,α,α-TMN to β,β,β-TMN isomers. This indicates that the binding affinity between TMNs and active site of bacterial enzymes is mainly determined by dispersive and inductive effects. Therefore, the computed polarizability values of TMNs can be used as predictors of the rates of biodegradation of TMNs.
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Affiliation(s)
- Bojana D Ostojić
- Institute of Chemistry, Technology and Metallurgy, University of Belgrade, Studentski trg 14-16, 11 000 Belgrade, Serbia.
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Omidyan R. Protonation effect on the electronic structure of small PAHs: Acenaphthylene and Acenaphthene. Chem Phys Lett 2011. [DOI: 10.1016/j.cplett.2011.10.037] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/15/2022]
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Mayer PM, Blanchet V, Joblin C. Threshold photoelectron study of naphthalene, anthracene, pyrene, 1,2-dihydronaphthalene, and 9,10-dihydroanthracene. J Chem Phys 2011; 134:244312. [DOI: 10.1063/1.3604933] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023] Open
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Alata I, Broquier M, Dedonder-Lardeux C, Jouvet C, Kim M, Sohn WY, Kim SS, Kang H, Schütz M, Patzer A, Dopfer O. Microhydration effects on the electronic spectra of protonated polycyclic aromatic hydrocarbons: [naphthalene-(H2O)n = 1,2]H+. J Chem Phys 2011; 134:074307. [DOI: 10.1063/1.3554416] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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Ghanta S, Reddy VS, Mahapatra S. Theoretical study of electronically excited radical cations of naphthalene and anthracene as archetypal models for astrophysical observations. Part I. Static aspects. Phys Chem Chem Phys 2011; 13:14523-30. [DOI: 10.1039/c1cp21083a] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
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Ghanta S, Sivaranjana Reddy V, Mahapatra S. Theoretical study of the electronically excited radical cations of naphthalene and anthracene as archetypal models for astrophysical observations. Part II. Dynamics consequences. Phys Chem Chem Phys 2011; 13:14531-41. [DOI: 10.1039/c1cp21084j] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
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Alata I, Dedonder C, Broquier M, Marceca E, Jouvet C. Role of the Charge-Transfer State in the Electronic Absorption of Protonated Hydrocarbon Molecules. J Am Chem Soc 2010; 132:17483-9. [DOI: 10.1021/ja106424f] [Citation(s) in RCA: 63] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Ivan Alata
- Centre Laser de l’Université Paris Sud (LUMAT FR 2764), Bât. 106, and Institut des Sciences Moléculaires d’Orsay, Bât. 210, Université Paris-Sud 11, 91405 Orsay Cedex, France, Atomic Energy Commission of Syria, P.O. Box 6091, Damascus, Syria, and INQUIMAE-FCEN,UBA, Ciudad Universitaria, 3er piso, Pab. II, 1428 Buenos Aires, Argentina
| | - Claude Dedonder
- Centre Laser de l’Université Paris Sud (LUMAT FR 2764), Bât. 106, and Institut des Sciences Moléculaires d’Orsay, Bât. 210, Université Paris-Sud 11, 91405 Orsay Cedex, France, Atomic Energy Commission of Syria, P.O. Box 6091, Damascus, Syria, and INQUIMAE-FCEN,UBA, Ciudad Universitaria, 3er piso, Pab. II, 1428 Buenos Aires, Argentina
| | - Michel Broquier
- Centre Laser de l’Université Paris Sud (LUMAT FR 2764), Bât. 106, and Institut des Sciences Moléculaires d’Orsay, Bât. 210, Université Paris-Sud 11, 91405 Orsay Cedex, France, Atomic Energy Commission of Syria, P.O. Box 6091, Damascus, Syria, and INQUIMAE-FCEN,UBA, Ciudad Universitaria, 3er piso, Pab. II, 1428 Buenos Aires, Argentina
| | - Ernesto Marceca
- Centre Laser de l’Université Paris Sud (LUMAT FR 2764), Bât. 106, and Institut des Sciences Moléculaires d’Orsay, Bât. 210, Université Paris-Sud 11, 91405 Orsay Cedex, France, Atomic Energy Commission of Syria, P.O. Box 6091, Damascus, Syria, and INQUIMAE-FCEN,UBA, Ciudad Universitaria, 3er piso, Pab. II, 1428 Buenos Aires, Argentina
| | - Christophe Jouvet
- Centre Laser de l’Université Paris Sud (LUMAT FR 2764), Bât. 106, and Institut des Sciences Moléculaires d’Orsay, Bât. 210, Université Paris-Sud 11, 91405 Orsay Cedex, France, Atomic Energy Commission of Syria, P.O. Box 6091, Damascus, Syria, and INQUIMAE-FCEN,UBA, Ciudad Universitaria, 3er piso, Pab. II, 1428 Buenos Aires, Argentina
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Scheer AM, Mukarakate C, Robichaud DJ, Ellison GB, Nimlos MR. Radical Chemistry in the Thermal Decomposition of Anisole and Deuterated Anisoles: An Investigation of Aromatic Growth. J Phys Chem A 2010; 114:9043-56. [DOI: 10.1021/jp102046p] [Citation(s) in RCA: 91] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Adam M. Scheer
- National Renewable Energy Laboratory, 1617 Cole Boulevard, Golden, Colorado 80401-3393 and Department of Chemistry and Biochemistry, University of Colorado-Boulder, Boulder, Colorado 80309-0215
| | - Calvin Mukarakate
- National Renewable Energy Laboratory, 1617 Cole Boulevard, Golden, Colorado 80401-3393 and Department of Chemistry and Biochemistry, University of Colorado-Boulder, Boulder, Colorado 80309-0215
| | - David J. Robichaud
- National Renewable Energy Laboratory, 1617 Cole Boulevard, Golden, Colorado 80401-3393 and Department of Chemistry and Biochemistry, University of Colorado-Boulder, Boulder, Colorado 80309-0215
| | - G. Barney Ellison
- National Renewable Energy Laboratory, 1617 Cole Boulevard, Golden, Colorado 80401-3393 and Department of Chemistry and Biochemistry, University of Colorado-Boulder, Boulder, Colorado 80309-0215
| | - Mark R. Nimlos
- National Renewable Energy Laboratory, 1617 Cole Boulevard, Golden, Colorado 80401-3393 and Department of Chemistry and Biochemistry, University of Colorado-Boulder, Boulder, Colorado 80309-0215
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Zhang J, Han F, Kong W. Zero Kinetic Energy Photoelectron Spectroscopy of Pyrene. J Phys Chem A 2010; 114:11117-24. [DOI: 10.1021/jp1024813] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Affiliation(s)
- Jie Zhang
- Department of Chemistry, Oregon State University, Corvallis, Oregon 97331-4003
| | - Fangyuan Han
- Department of Chemistry, Oregon State University, Corvallis, Oregon 97331-4003
| | - Wei Kong
- Department of Chemistry, Oregon State University, Corvallis, Oregon 97331-4003
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Alata I, Omidyan R, Broquier M, Dedonder C, Dopfer O, Jouvet C. Effect of protonation on the electronic structure of aromatic molecules: naphthaleneH+. Phys Chem Chem Phys 2010; 12:14456-8. [DOI: 10.1039/c0cp00792g] [Citation(s) in RCA: 62] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Sebree JA, Kislov VV, Mebel AM, Zwier TS. Isomer specific spectroscopy of C10Hn, n = 8–12: Exploring pathways to naphthalene in Titan's atmosphere. Faraday Discuss 2010; 147:231-49; discussion 251-82. [DOI: 10.1039/c003657a] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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