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Lan J, Yamamoto YI, Suzuki T, Rybkin VV. Shallow and deep trap states of solvated electrons in methanol and their formation, electronic excitation, and relaxation dynamics. Chem Sci 2022; 13:3837-3844. [PMID: 35432888 PMCID: PMC8966712 DOI: 10.1039/d1sc06666h] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2021] [Accepted: 02/24/2022] [Indexed: 11/30/2022] Open
Abstract
We present condensed-phase first-principles molecular dynamics simulations to elucidate the presence of different electron trapping sites in liquid methanol and their roles in the formation, electronic transitions, and relaxation of solvated electrons (emet−) in methanol. Excess electrons injected into liquid methanol are most likely trapped by methyl groups, but rapidly diffuse to more stable trapping sites with dangling OH bonds. After localization at the sites with one free OH bond (1OH trapping sites), reorientation of other methanol molecules increases the OH coordination number and the trap depth, and ultimately four OH bonds become coordinated with the excess electrons under thermal conditions. The simulation identified four distinct trapping states with different OH coordination numbers. The simulation results also revealed that electronic transitions of emet− are primarily due to charge transfer between electron trapping sites (cavities) formed by OH and methyl groups, and that these transitions differ from hydrogenic electronic transitions involving aqueous solvated electrons (eaq−). Such charge transfer also explains the alkyl-chain-length dependence of the photoabsorption peak wavelength and the excited-state lifetime of solvated electrons in primary alcohols. Condensed-phase first-principles molecular dynamics simulations elucidate the presence of different electron trapping sites in liquid methanol and their roles in the formation, electronic transitions, and relaxation of solvated electrons.![]()
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Affiliation(s)
- Jinggang Lan
- Department of Chemistry, University of Zurich, Winterthurerstrasse 190, Zurich 8057, Switzerland
| | - Yo-ichi Yamamoto
- Department of Chemistry, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan
| | - Toshinori Suzuki
- Department of Chemistry, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan
| | - Vladimir V. Rybkin
- Department of Chemistry, University of Zurich, Winterthurerstrasse 190, Zurich 8057, Switzerland
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2
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Ban L, West CW, Chasovskikh E, Gartmann TE, Yoder BL, Signorell R. Below Band Gap Formation of Solvated Electrons in Neutral Water Clusters? J Phys Chem A 2020; 124:7959-7965. [PMID: 32878434 PMCID: PMC7536715 DOI: 10.1021/acs.jpca.0c06935] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2020] [Revised: 09/01/2020] [Indexed: 01/25/2023]
Abstract
Below band gap formation of solvated electrons in neutral water clusters using pump-probe photoelectron imaging is compared with recent data for liquid water and with above band gap excitation studies in liquid and clusters. Similar relaxation times on the order of 200 fs and 1-2 ps are retrieved for below and above band gap excitation, in both clusters and liquid. The independence of the relaxation times from the generation process indicates that these times are dominated by the solvent response, which is significantly slower than the various solvated electron formation processes. The analysis of the temporal evolution of the vertical electron binding energy and the electron binding energy at half-maximum suggests a dependence of the solvation time on the binding energy.
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Affiliation(s)
- Loren Ban
- ETH Zurich, Department of Chemistry
and Applied Biosciences, Vladimir-Prelog-Weg 2, CH-8093 Zurich, Switzerland
| | - Christopher W. West
- ETH Zurich, Department of Chemistry
and Applied Biosciences, Vladimir-Prelog-Weg 2, CH-8093 Zurich, Switzerland
| | - Egor Chasovskikh
- ETH Zurich, Department of Chemistry
and Applied Biosciences, Vladimir-Prelog-Weg 2, CH-8093 Zurich, Switzerland
| | - Thomas E. Gartmann
- ETH Zurich, Department of Chemistry
and Applied Biosciences, Vladimir-Prelog-Weg 2, CH-8093 Zurich, Switzerland
| | - Bruce L. Yoder
- ETH Zurich, Department of Chemistry
and Applied Biosciences, Vladimir-Prelog-Weg 2, CH-8093 Zurich, Switzerland
| | - Ruth Signorell
- ETH Zurich, Department of Chemistry
and Applied Biosciences, Vladimir-Prelog-Weg 2, CH-8093 Zurich, Switzerland
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3
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Structure and spectrum of the hydrated electron. A combined quantum chemical statistical mechanical simulation. J Mol Liq 2019. [DOI: 10.1016/j.molliq.2019.111300] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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4
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Hara A, Yamamoto YI, Suzuki T. Solvated electron formation from the conduction band of liquid methanol: Transformation from a shallow to deep trap state. J Chem Phys 2019; 151:114503. [PMID: 31542023 DOI: 10.1063/1.5116818] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
Abstract
We report solvated electron (esolv -) formation dynamics from the conduction band of liquid methanol studied using femtosecond time-resolved photoelectron spectroscopy. Liquid methanol is excited with vacuum UV (9.3 eV) pump pulses, and the subsequent electron dynamics are probed with UV pulses. The photoelectron signal exhibits a short-lived component (τ = 85 fs) without spectral evolution followed by a long-lived component with continuous spectral evolution over tens of picoseconds. We ascribe the former to a superexcited state, most likely the Wannier exciton, and the latter to the ground electronic state of esolv -. In order to extract accurate energetics from the observed photoelectron spectra, we employ a spectral retrieval method to account for spectral broadening and shifting due to inelastic scattering of photoelectrons in the liquid. The electron binding energy (eBE) of the initial trap state of an electron is determined to be about 1.5 eV, and its biexponential increase up to 3.4 eV is observed with time constants of 2 and 31 ps, which are greater than 0.27 and 13 ps observed for esolv - created by the charge-transfer-to-solvent reaction from CH3O- to liquid methanol. The solvation dynamics of esolv - created by the electron trapping exhibit a pseudoisosbestic point at a pump-probe delay time of around 15 ps, and the peak energy of the eBE distribution rapidly changes around that time. These results indicate that there exist two trap states, both of which exhibit increasing eBE with time; however, the eBE of the shallow trap state increases only up to 2.1 eV, and transformation to a deep trap state at 25 ps occurs to reach an eBE of 3.4 eV.
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Affiliation(s)
- Ayano Hara
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo-Ku, Kyoto 606-8502, Japan
| | - Yo-Ichi Yamamoto
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo-Ku, Kyoto 606-8502, Japan
| | - Toshinori Suzuki
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo-Ku, Kyoto 606-8502, Japan
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5
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Affiliation(s)
- Toshinori Suzuki
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo-Ku, Kyoto 606-8502,
Japan
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6
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Karashima S, Yamamoto YI, Suzuki T. Ultrafast Internal Conversion and Solvation of Electrons in Water, Methanol, and Ethanol. J Phys Chem Lett 2019; 10:4499-4504. [PMID: 31343891 DOI: 10.1021/acs.jpclett.9b01750] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Ultrafast internal conversion from the first excited state of a solvated electron in water, methanol, and ethanol is investigated using time-resolved photoelectron spectroscopy of liquid microjets and a spectral retrieval method. Photoelectron spectra corrected for inelastic scattering clearly reveal well-separated signals from the excited and ground states, and the latter enables us to analyze the solvation dynamics in the ground state after internal conversion. Measurements with 25 fs time resolution identify a rapid increase in the vertical electron binding energy of the solvated electron owing to nuclear wave packet motions in the excited state and allow us to precisely determine the internal conversion time.
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Affiliation(s)
- Shutaro Karashima
- Department of Chemistry, Graduate School of Science , Kyoto University , Kitashirakawa-Oiwakecho, Sakyo-Ku, Kyoto 606-8502 , Japan
| | - Yo-Ichi Yamamoto
- Department of Chemistry, Graduate School of Science , Kyoto University , Kitashirakawa-Oiwakecho, Sakyo-Ku, Kyoto 606-8502 , Japan
| | - Toshinori Suzuki
- Department of Chemistry, Graduate School of Science , Kyoto University , Kitashirakawa-Oiwakecho, Sakyo-Ku, Kyoto 606-8502 , Japan
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7
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Nishitani J, Yamamoto YI, West CW, Karashima S, Suzuki T. Binding energy of solvated electrons and retrieval of true UV photoelectron spectra of liquids. SCIENCE ADVANCES 2019; 5:eaaw6896. [PMID: 31497644 PMCID: PMC6716956 DOI: 10.1126/sciadv.aaw6896] [Citation(s) in RCA: 39] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2019] [Accepted: 07/24/2019] [Indexed: 05/24/2023]
Abstract
The electronic energy and dynamics of solvated electrons, the simplest yet elusive chemical species, is of interest in chemistry, physics, and biology. Here, we present the electron binding energy distributions of solvated electrons in liquid water, methanol, and ethanol accurately measured using extreme ultraviolet (EUV) photoelectron spectroscopy of liquids with a single-order high harmonic. The distributions are Gaussian in all cases. Using the EUV and UV photoelectron spectra of solvated electrons, we succeeded in retrieving sharp electron kinetic energy distributions from the spectra broadened and energy shifted by inelastic scattering in liquids, overcoming an obstacle in ultrafast UV photoelectron spectroscopy of liquids. The method is demonstrated for the benchmark systems of charge transfer to solvent reaction and ultrafast internal conversion of hydrated electron from the first excited state.
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Abstract
A cavity or excluded-volume structure best explains the experimental properties of the aqueous or “hydrated” electron.
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Affiliation(s)
- John M. Herbert
- Department of Chemistry & Biochemistry
- The Ohio State University
- Columbus
- USA
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9
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Schile AJ, Thompson WH. Tests for, origins of, and corrections to non-Gaussian statistics. The dipole-flip model. J Chem Phys 2017; 146:154109. [DOI: 10.1063/1.4981009] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023] Open
Affiliation(s)
- Addison J. Schile
- Department of Chemistry, University of Kansas, Lawrence, Kansas 66045, USA
| | - Ward H. Thompson
- Department of Chemistry, University of Kansas, Lawrence, Kansas 66045, USA
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10
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Turi L, Rossky PJ. Theoretical studies of spectroscopy and dynamics of hydrated electrons. Chem Rev 2012; 112:5641-74. [PMID: 22954423 DOI: 10.1021/cr300144z] [Citation(s) in RCA: 129] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- László Turi
- Department of Physical Chemistry, Eötvös Loránd University, Budapest, Hungary.
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11
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Marsalek O, Elles CG, Pieniazek PA, Pluhařová E, VandeVondele J, Bradforth SE, Jungwirth P. Chasing charge localization and chemical reactivity following photoionization in liquid water. J Chem Phys 2012; 135:224510. [PMID: 22168706 DOI: 10.1063/1.3664746] [Citation(s) in RCA: 73] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023] Open
Abstract
The ultrafast dynamics of the cationic hole formed in bulk liquid water following ionization is investigated by ab initio molecular dynamics simulations and an experimentally accessible signature is suggested that might be tracked by femtosecond pump-probe spectroscopy. This is one of the fastest fundamental processes occurring in radiation-induced chemistry in aqueous systems and biological tissue. However, unlike the excess electron formed in the same process, the nature and time evolution of the cationic hole has been hitherto little studied. Simulations show that an initially partially delocalized cationic hole localizes within ~30 fs after which proton transfer to a neighboring water molecule proceeds practically immediately, leading to the formation of the OH radical and the hydronium cation in a reaction which can be formally written as H(2)O(+) + H(2)O → OH + H(3)O(+). The exact amount of initial spin delocalization is, however, somewhat method dependent, being realistically described by approximate density functional theory methods corrected for the self-interaction error. Localization, and then the evolving separation of spin and charge, changes the electronic structure of the radical center. This is manifested in the spectrum of electronic excitations which is calculated for the ensemble of ab initio molecular dynamics trajectories using a quantum mechanics/molecular mechanics (QM∕MM) formalism applying the equation of motion coupled-clusters method to the radical core. A clear spectroscopic signature is predicted by the theoretical model: as the hole transforms into a hydroxyl radical, a transient electronic absorption in the visible shifts to the blue, growing toward the near ultraviolet. Experimental evidence for this primary radiation-induced process is sought using femtosecond photoionization of liquid water excited with two photons at 11 eV. Transient absorption measurements carried out with ~40 fs time resolution and broadband spectral probing across the near-UV and visible are presented and direct comparisons with the theoretical simulations are made. Within the sensitivity and time resolution of the current measurement, a matching spectral signature is not detected. This result is used to place an upper limit on the absorption strength and/or lifetime of the localized H(2)O(+) ((aq)) species.
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Affiliation(s)
- Ondrej Marsalek
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic and Center for Biomolecules and Complex Molecular Systems, Flemingovo nám. 2, 16610 Prague 6, Czech Republic
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12
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Mones L, Turi L. A new electron-methanol molecule pseudopotential and its application for the solvated electron in methanol. J Chem Phys 2010; 132:154507. [DOI: 10.1063/1.3385798] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023] Open
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13
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Kalugin ON, Chaban VV, Loskutov VV, Prezhdo OV. Uniform diffusion of acetonitrile inside carbon nanotubes favors supercapacitor performance. NANO LETTERS 2008; 8:2126-2130. [PMID: 18627204 DOI: 10.1021/nl072976g] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
An unusual behavior of liquid acetonitrile (AN) confined inside carbon nanotubes (CNTs) is predicted by molecular dynamics simulation. In contrast to water, which shows inhomogeneous variation of both translational and rotational diffusion with CNT diameter [ Nano Lett. 2003, 3, 589; 2004, 4, 619], the diffusion coefficient of AN changes uniformly and can be described by a simple analytic model. At the same time, the reorientation dynamics of AN vary irregularly in smaller CNTs because of specific packing structures. The uniform translational diffusion of the nonaqueous solvent is critical for stable performance of the new generation of supercapacitors [ Nat. Mater. 2006, 5, 987].
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Affiliation(s)
- Oleg N Kalugin
- Department of Inorganic Chemistry, Kharkiv National University, Kharkiv, Ukraine.
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14
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Kilin DS, Prezhdo OV, Schreiber M. Photoinduced Vibrational Coherence Transfer in Molecular Dimers. J Phys Chem A 2007; 111:10212-9. [PMID: 17850116 DOI: 10.1021/jp0709050] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
At short times that are faster than dephasing, photoinduced evolution of the vibrational subsystem in an electron-phonon molecular structure depends strongly on the electronic evolution. As the electronic population shifts between the donor and acceptor states, in the diabatic description the state with the largest population determines the equilibrium positions and frequencies of the vibrational modes, which oscillate continuously and without loss of coherence. The vibrational coherence transfer between the electronic states detected recently in a number of systems is described theoretically by application of the quantized Hamiltonian dynamics (QHD) formalism [J. Chem. Phys. 2000, 113, 6557] to the coupled electronic and vibrational degrees of freedom of a model heterodimer. The observed coherent modulation of the frequency of the probe signal is represented with simple analytic and numeric QHD models.
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Affiliation(s)
- Dmitri S Kilin
- Department of Chemistry, University of Washington, Seattle, Washington 98195-1700, USA
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15
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Stuart CM, Tauber MJ, Mathies RA. Structure and Dynamics of the Solvated Electron in Alcohols from Resonance Raman Spectroscopy. J Phys Chem A 2007; 111:8390-400. [PMID: 17676822 DOI: 10.1021/jp068283q] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Resonance Raman (RR) spectroscopy is used to probe the structure and excited-state dynamics of the solvated electron in the primary liquid alcohols methanol (MeOH), ethanol (EtOH), n-propanol (n-PrOH), and n-butanol (n-BuOH). The strong resonance enhancements (>or=10(4) relative to pure solvent) of the libration, CO stretch, COH bend, CH3 bend, CH2 bend, and OH stretch reveal significant Franck-Condon coupling of the intermolecular and intramolecular vibrational modes of the solvent to the electronic excitation of the solvated electron. All enhanced bands are fully accounted for by a model of the solvated electron that is comprised of several nearby solvent molecules that are only perturbed by the presence of the electron; no new molecular species are required to explain our data. The 340 cm(-1) downshift observed for the OH stretch frequency of e-(MeOH), relative to pure solvent, strongly suggests that the methanol molecules in the first solvent shell have the hydroxyl group directed linearly toward the excess electron density. The smaller downshifts observed for e-(EtOH), e-(n-PrOH), and e-(n-BuOH) are explained in terms of a OH group that is bent 28-40 degrees from linear. The Raman cross sections and absorption spectra are modeled, lending quantitative support for the inhomogeneous origin of the broad absorption spectra, the necessity of OH local motion in all enhanced Raman modes of the alcohols, and the dominant librational response of the solvent upon photoexcitation of the electron.
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Affiliation(s)
- Christina M Stuart
- Department of Chemistry, University of California, Berkeley, California 94720, USA
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16
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Kilin DS, Tsemekhman K, Prezhdo OV, Zenkevich EI, von Borczyskowski C. Ab initio study of exciton transfer dynamics from a core–shell semiconductor quantum dot to a porphyrin-sensitizer. J Photochem Photobiol A Chem 2007. [DOI: 10.1016/j.jphotochem.2007.02.017] [Citation(s) in RCA: 62] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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17
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Thaller A, Laenen R, Laubereau A. The precursors of the solvated electron in methanol studied by femtosecond pump-repump-probe spectroscopy. J Chem Phys 2007; 124:024515. [PMID: 16422619 DOI: 10.1063/1.2155481] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Using UV photoionization and delayed near-infrared reexcitation pulses, a novel time-, frequency-, and polarization-resolved pump-repump-probe spectroscopy is conducted in the probing range of 450-2400 nm with improved experimental accuracy. Both the generation process and relaxation dynamics following selective repumping of intermediate species of the solvated electron are investigated and analyzed self-consistently with the help of a kinetic model. New insight in the intermediates of the trapped electron is gained leading to a unique microscopic picture.
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Affiliation(s)
- A Thaller
- Physik Department E11, Technische Universität München, D-85748 Garching, Germany.
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18
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Laird BB, Thompson WH. On the connection between Gaussian statistics and excited-state linear response for time-dependent fluorescence. J Chem Phys 2007; 126:211104. [PMID: 17567183 DOI: 10.1063/1.2747237] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
Abstract
Time-dependent fluorescence (TDF) of a chromophore in a polar or nonpolar solvent is frequently simulated using linear-response approximations. It is shown that one such linear-response-type approximation for the TDF Stokes shift derived by Carter and Hynes [J. Chem. Phys. 94, 5961 (1991)] that is based on excited-state dynamics gives the same result as that obtained by assuming Gaussian statistics for the energy gap. The derivation provides insight into the much discussed relationship between linear response and Gaussian statistics. In particular, subtle but important differences between the two approximations are illuminated that suggest that the result is likely more generally applicable than suggested by the usual linearization procedure. In addition, the assumption of Gaussian statistics directly points to straightforward checks of the validity of the approximation with essentially no additional computational effort.
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Affiliation(s)
- Brian B Laird
- Department of Chemistry, University of Kansas, Lawrence, Kansas 66045, USA.
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19
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Zhao J, Li B, Onda K, Feng M, Petek H. Solvated Electrons on Metal Oxide Surfaces. Chem Rev 2006; 106:4402-27. [PMID: 17031992 DOI: 10.1021/cr050173c] [Citation(s) in RCA: 120] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- Jin Zhao
- Department of Physics and Astronomy, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA
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20
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Borgis D, Rossky PJ, Turi L. Quantized time correlation function approach to nonadiabatic decay rates in condensed phase: Application to solvated electrons in water and methanol. J Chem Phys 2006; 125:64501. [PMID: 16942292 DOI: 10.1063/1.2221685] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023] Open
Abstract
A new, alternative form of the golden rule formula defining the nonadiabatic transition rate between two quantum states in condensed phase is presented. The formula involves the quantum time correlation function of the energy gap, of the nonadiabatic coupling, and their cross terms. Those quantities can be inferred from their classical counterparts, determined via molecular dynamics simulations. The formalism is applied to the problem of the nonadiabatic p-->s relaxation of an equilibrated p-electron in water and methanol. We find that, in both solvents, the relaxation is induced by the coupling to the vibrational modes and the quantum effects modify the rate by a factor of 2-10 depending on the quantization procedure applied. The resulting p-state lifetime for a hypothetical equilibrium excited state appears extremely short, in the sub-100 fs regime. Although this result is in contrast with all previous theoretical predictions, we also illustrate that the lifetimes computed here are very sensitive to the simulated electronic quantum gap and to the strongly correlated nonadiabatic coupling.
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Affiliation(s)
- Daniel Borgis
- Département Physique et Modélisation, Université d'Evry-Val-d'Essone, Boulevard François Mitterand, 91025 Evry, France.
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21
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Neumann S, Eisfeld W, Sobolewski AL, Domcke W. Resonance Raman Spectrum of the Solvated Electron in Methanol: Simulation within a Cluster Model. J Phys Chem A 2006; 110:5613-9. [PMID: 16640354 DOI: 10.1021/jp0574549] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The microsolvation of the CH(3)OH(2) hypervalent radical in methanol clusters has been investigated by density functional theory. It is shown that the CH(3)OH(2) radical spontaneously decomposes within methanol clusters into protonated methanol and a localized solvated electron cloud. The geometric and electronic structures of these clusters as well as their vibrational frequencies have been characterized. Resonance Raman intensities, associated with the s --> p transition of the unpaired electron, have been estimated for CH(3)OH(2)M(n) (M = CH(3)OH, n = 1-3) clusters. It is shown that with increasing cluster size the simulated spectra converge toward the resonance Raman spectrum of the solvated electron in methanol measured recently by Tauber and Mathies (J. Am. Chem. Soc. 2004, 126, 3414). The results suggest that CH(3)OH(2)M(n) clusters are useful finite-size model systems for the computational investigation of the spectroscopic properties of the solvated electron in liquid methanol.
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Affiliation(s)
- Stefanie Neumann
- Department of Chemistry, Technical University of Munich, Garching, Germany
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23
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Soriano A, Silla E, Tuñón I, Ruiz-López MF. Dynamic and electrostatic effects in enzymatic processes. An analysis of the nucleophilic substitution reaction in haloalkane dehalogenase. J Am Chem Soc 2005; 127:1946-57. [PMID: 15701029 DOI: 10.1021/ja046553h] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We present an analysis of rare event trajectories for the nucleophilic displacement of a chloride anion of 1,2-dichloroethane by a carboxylate group in haloalkane dehalogenase from Xanthobacterautotrophicus (DhlA) and in aqueous solution. Differences in the transmission coefficient are rationalized on the basis of the electrostatic coupling between the chemical system and the environment. Detailed analysis of the reactive trajectories reveals that the evolution of the hydrogen bond interactions established between the substrate and the environment present significant differences in aqueous solution and in the enzyme. The structure of the enzymatic active site provides a more adequate interaction pattern for the reaction progress.
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Affiliation(s)
- Alejandro Soriano
- Departament de Química Física/IcMol, Universidad de Valencia, 46100 Burjasot, Valencia, Spain
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24
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Nam K, Prat-Resina X, Garcia-Viloca M, Devi-Kesavan LS, Gao J. Dynamics of an enzymatic substitution reaction in haloalkane dehalogenase. J Am Chem Soc 2004; 126:1369-76. [PMID: 14759194 DOI: 10.1021/ja039093l] [Citation(s) in RCA: 55] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Reactive flux molecular dynamics simulations have been carried out using a combined QM/MM potential to study the dynamics of the nucleophilic substitution reaction of dichloroethane by a carboxylate group in haloalkane dehalogenase and in water. We found that protein dynamics accelerates the reaction rate by a factor of 2 over the uncatalyzed reaction. Compared to the thermodynamic effect in barrier reduction, protein dynamic contribution is relatively small. However, analyses of the friction kernel reveal that the origins of the reaction dynamics in water and in the enzyme are different. In aqueous solution, there is significant electrostatic solvation effect, which is reflected by the slow reorganization relaxation of the solvent. On the other hand, there is no strong electrostatic coupling in the enzyme and the major effect on reaction coordinate motion is intramolecular energy relaxation.
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Affiliation(s)
- Kwangho Nam
- Department of Chemistry and Supercomputing Institute, Digital Technology Center, University of Minnesota, Minneapolis, Minnesota 55455, USA
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25
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Turi L, Rossky PJ. Critical evaluation of approximate quantum decoherence rates for an electronic transition in methanol solution. J Chem Phys 2004; 120:3688-98. [PMID: 15268531 DOI: 10.1063/1.1642609] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We present a quantum molecular dynamics calculation of a semiclassical decoherence function to evaluate the accuracy of alternative short-time approximations for coherence loss in the dynamics of condensed phase electronically nonadiabatic processes. The semiclassical function from mixed quantum-classical molecular dynamics simulations and frozen Gaussian wave packets is computed for the electronic transition of an excited state excess electron to the ground state in liquid methanol. The decoherence function decays on a 10 fs time scale that is qualitatively similar to the aqueous case. We demonstrate that it is the motion of the hydrogen atom, and, in particular, the hydrogen rotation around the oxygen-methyl bond which is predominantly responsible for destroying the quantum correlations between alternative states. Multiple time scales due to the slower diffusive nuclear modes, which dominate the solvation response of methanol, do not contribute to the coherence loss. The choice of the coordinate representation is investigated in detail and concluded to be irrelevant to the decay. Changes in both nuclear momenta and positions on the two alternative potential surfaces are found to contribute to decoherence, the former dominating at short times (t < 5 fs), the latter controlling the decay at longer times. Various short-time approximations to the full dynamics for the decoherence function are tested for the first time. The present treatment rigorously develops the short-time description and establishes its range of validity. Whereas the lowest-order short-time approximation proves to be a very good approximation up to about 5 fs, we also find that it bounds the decay of the decoherence function. After 5 fs, the coherence decay in fact becomes faster than the single Gaussian predicted in the lowest-order short-time limit. This decay is well reflected by an enhanced low-order approximation, which is also easily computed from equilibrium classical forces.
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Affiliation(s)
- László Turi
- Eötvös Loránd University, Department of Physical Chemistry, Budapest 112, PO Box 32, H-1518, Hungary.
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26
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Brooksby C, Prezhdo OV, Reid PJ. Molecular dynamics study of the weakly solvent dependent relaxation dynamics following chlorine dioxide photoexcitation. J Chem Phys 2003. [DOI: 10.1063/1.1614203] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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27
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Nicolas C, Boutin A, Lévy B, Borgis D. Molecular simulation of a hydrated electron at different thermodynamic state points. J Chem Phys 2003. [DOI: 10.1063/1.1570407] [Citation(s) in RCA: 61] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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28
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Zhan CG, Dixon DA. The Nature and Absolute Hydration Free Energy of the Solvated Electron in Water. J Phys Chem B 2003. [DOI: 10.1021/jp022326v] [Citation(s) in RCA: 96] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Chang-Guo Zhan
- William R. Wiley Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, MS K1-83, P.O. Box 999, Richland, Washington 99352
| | - David A. Dixon
- William R. Wiley Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, MS K1-83, P.O. Box 999, Richland, Washington 99352
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29
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Scheidt T, Laenen R. Ionization of methanol: monitoring the trapping of electrons on the fs time scale. Chem Phys Lett 2003. [DOI: 10.1016/s0009-2614(03)00306-3] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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30
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Brooksby C, Prezhdo OV, Reid PJ. Molecular dynamics study of aqueous solvation dynamics following OClO photoexcitation. J Chem Phys 2003. [DOI: 10.1063/1.1545097] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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31
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Turi L, Borgis D. Analytical investigations of an electron–water molecule pseudopotential. II. Development of a new pair potential and molecular dynamics simulations. J Chem Phys 2002. [DOI: 10.1063/1.1503308] [Citation(s) in RCA: 132] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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32
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Wong KF, Rossky PJ. Dissipative mixed quantum-classical simulation of the aqueous solvated electron system. J Chem Phys 2002. [DOI: 10.1063/1.1468886] [Citation(s) in RCA: 72] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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33
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Golosov AA, Reichman DR. Reference system master equation approaches to condensed phase charge transfer processes. I. General formulation. J Chem Phys 2001. [DOI: 10.1063/1.1412611] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022] Open
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34
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Yang CY, Wong KF, Skaf MS, Rossky PJ. Instantaneous normal mode analysis of hydrated electron solvation dynamics. J Chem Phys 2001. [DOI: 10.1063/1.1343871] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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35
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Jungwirth P, Spirko V. Double tunneling: An overlooked quantum effect in anionic molecular clusters. PHYSICAL REVIEW LETTERS 2000; 84:1140-1143. [PMID: 11017463 DOI: 10.1103/physrevlett.84.1140] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/1999] [Indexed: 05/23/2023]
Abstract
Simultaneous tunneling of an electron and nuclei in hydrogen-bonded molecular clusters which support a dipole bound electron is reported. A whole class of systems including hydrogen halide and water dimer anions is predicted to exhibit this effect. A measurable signature of double tunneling is a strong reduction of the tunneling splitting compared to the neutral cluster. Quantum mechanical calculations give for the hydrogen fluoride dimer anion a ground-state tunneling splitting of 114 MHz, while for the first excited vibrational state the tunneling splitting reaches 4.20 GHz.
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Affiliation(s)
- P Jungwirth
- J. Heyrovsky Institute of Physical Chemistry, Academy of Sciences of the Czech Republic, Dolejskova 3, 18223 Prague 8, Czech Republic
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36
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37
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Mosyak A, Prezhdo O, Rossky P. The role of specific solvent modes in the non-radiative relaxation of an excess electron in methanol. J Mol Struct 1999. [DOI: 10.1016/s0022-2860(99)00189-1] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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38
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39
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Mináry P, Turi L, Rossky PJ. Nonadiabatic molecular dynamics simulation of photoexcitation experiments for the solvated electron in methanol. J Chem Phys 1999. [DOI: 10.1063/1.479032] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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