1
|
Yanagisawa R, Ueda T, Nakamoto KI, Lu Z, Onishi H, Minato T. The interface between ice and alcohols analyzed by atomic force microscopy. J Chem Phys 2024; 161:024702. [PMID: 38980093 DOI: 10.1063/5.0211501] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2024] [Accepted: 05/28/2024] [Indexed: 07/10/2024] Open
Abstract
This study investigates the interface between ice and organic solvents using atomic force microscopy (AFM). Atomically flat ice surfaces were prepared and observed by AFM in 1-octanol, 1-hexanol, and 1-butanol. The results show differences in surface roughness influenced by the interaction of ice and alcohols. Young's modulus of ice was analyzed by force curve measurements, providing valuable insights into the properties of ice in liquid environments. The results showed the characteristics of the ice surface in different solvents, suggesting potential applications in understanding surface and interface phenomena associated with ice under realistic conditions.
Collapse
Affiliation(s)
- Ryo Yanagisawa
- Department of Chemistry, School of Science, Kobe University, Nada-ku, Kobe 657-8501, Japan
| | - Tadashi Ueda
- Institute for Molecular Science, National Institutes of Natural Sciences, Nishigonaka 38, Myodaiji-cho, Okazaki, Aichi 444-8585, Japan
| | - Kei-Ichi Nakamoto
- Institute for Molecular Science, National Institutes of Natural Sciences, Nishigonaka 38, Myodaiji-cho, Okazaki, Aichi 444-8585, Japan
| | - Zhengxi Lu
- Department of Chemistry, School of Science, Kobe University, Nada-ku, Kobe 657-8501, Japan
| | - Hiroshi Onishi
- Department of Chemistry, School of Science, Kobe University, Nada-ku, Kobe 657-8501, Japan
- Institute for Molecular Science, National Institutes of Natural Sciences, Nishigonaka 38, Myodaiji-cho, Okazaki, Aichi 444-8585, Japan
| | - Taketoshi Minato
- Institute for Molecular Science, National Institutes of Natural Sciences, Nishigonaka 38, Myodaiji-cho, Okazaki, Aichi 444-8585, Japan
| |
Collapse
|
2
|
Arvelo DM, Garcia-Sacristan C, Chacón E, Tarazona P, Garcia R. Interfacial water on collagen nanoribbons by 3D AFM. J Chem Phys 2024; 160:164714. [PMID: 38656444 DOI: 10.1063/5.0205611] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2024] [Accepted: 04/09/2024] [Indexed: 04/26/2024] Open
Abstract
Collagen is the most abundant structural protein in mammals. Type I collagen in its fibril form has a characteristic pattern structure that alternates two regions called gap and overlap. The structure and properties of collagens are highly dependent on the water and mineral content of the environment. Here, we apply 3D AFM to characterize at angstrom-scale resolution the interfacial water structure of collagen nanoribbons. For a neutral tip, the interfacial water structure is characterized by the oscillation of the water particle density distribution with a value of 0.3 nm (hydration layers). The interfacial structure does not depend on the collagen region. For a negatively charged tip, the interfacial structure might depend on the collagen region. Hydration layers are observed in overlap regions, while in gap regions, the interfacial solvent structure is dominated by electrostatic interactions. These interactions generate interlayer distances of 0.2 nm.
Collapse
Affiliation(s)
- Diana M Arvelo
- Instituto de Ciencia de Materiales de Madrid, CSIC, 28049 Madrid, Spain
| | | | - Enrique Chacón
- Instituto de Ciencia de Materiales de Madrid, CSIC, 28049 Madrid, Spain
| | - Pedro Tarazona
- Departamento de Física Teórica de la Materia Condensada, IFIMAC Condensed Matter Physics Center, Universidad Autónoma de Madrid, Madrid 28049, Spain
| | - Ricardo Garcia
- Instituto de Ciencia de Materiales de Madrid, CSIC, 28049 Madrid, Spain
| |
Collapse
|
3
|
Sumikama T. Computation of topographic and three-dimensional atomic force microscopy images of biopolymers by calculating forces. Biophys Rev 2023; 15:2059-2064. [PMID: 38192341 PMCID: PMC10771545 DOI: 10.1007/s12551-023-01167-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2023] [Accepted: 11/20/2023] [Indexed: 01/10/2024] Open
Abstract
Atomic force microscopy (AFM) is widely utilized to visualize the molecular motions of biomolecules. Comparison of experimentally measured AFM images with simulated AFM images based on known structures of biomolecules is often necessary to elucidate what is actually resolved in the images. Experimental AFM images are generated by force measurements; however, conventional AFM simulation has been based on geometrical considerations rather than calculating forces using molecular dynamics simulations due to limited computation time. This letter summarizes recently developed methods to simulate topographic and three-dimensional AFM (3D-AFM) images of biopolymers such as chromosomes and cytoskeleton fibers. Scanning such biomolecules in AFM measurements usually results in nonequilibrium-type work being performed. As such, the Jarzynski equality was employed to relate the nonequilibrium work to the free energy profiles, and the forces were calculated by differentiating the free energy profiles. The biomolecules and probes were approximated using a supra-coarse-grained model, allowing the simulation of force-distance curves in feasible time. It was found that there is an optimum scanning velocity and that some of polymer structures are resolved in the simulated 3D-AFM images. The theoretical background adopted to rationalize the use of small probe radius in the conventional AFM simulation of biomolecules is clarified.
Collapse
Affiliation(s)
- Takashi Sumikama
- PRESTO, JST, Kawaguchi, Saitama 332-0012 Japan
- Nano Life Science Institute (WPI-NanoLSI), Kanazawa University, Kanazawa, 920-1192 Japan
| |
Collapse
|
4
|
Ranawat YS, Jaques YM, Foster AS. Generalised deep-learning workflow for the prediction of hydration layers over surfaces. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.120571] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
|
5
|
John S, Kühnle A. Hydration Structure at the Calcite-Water (10.4) Interface in the Presence of Rubidium Chloride. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2022; 38:11691-11698. [PMID: 36120896 DOI: 10.1021/acs.langmuir.2c01745] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Solid-liquid interfaces are of significant importance in a multitude of geochemical and technological fields. More specifically, the solvation structure plays a decisive role in the properties of the interfaces. Atomic force microscopy (AFM) has been used to resolve the interfacial hydration structure in the presence and absence of ions. Despite many studies investigating the calcite-water interface, the impact of ions on the hydration structure at this interface has rarely been studied. Here, we investigate the calcite-water interface at various concentrations (ranging from 0 to 5 M) of rubidium chloride (RbCl) using three-dimensional atomic force microscopy (3D AFM). We present molecularly resolved images of the hydration structure at the interface. Interestingly, the characteristic pattern of the hydration structure appears similar regardless of the RbCl concentration. The presence of the ions is detected in an indirect manner by more frequent contrast changes and slice displacements.
Collapse
Affiliation(s)
- Simon John
- Physical Chemistry I, Faculty of Chemistry, Bielefeld University, Universitätsstraße 25, 33615 Bielefeld, Germany
| | - Angelika Kühnle
- Physical Chemistry I, Faculty of Chemistry, Bielefeld University, Universitätsstraße 25, 33615 Bielefeld, Germany
| |
Collapse
|
6
|
Söngen H, Schlegel SJ, Morais Jaques Y, Tracey J, Hosseinpour S, Hwang D, Bechstein R, Bonn M, Foster AS, Kühnle A, Backus EH. Water Orientation at the Calcite-Water Interface. J Phys Chem Lett 2021; 12:7605-7611. [PMID: 34350760 PMCID: PMC8365774 DOI: 10.1021/acs.jpclett.1c01729] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2021] [Accepted: 08/02/2021] [Indexed: 06/13/2023]
Abstract
Mineral-water interfaces play an important role in many natural as well as technological fields. Fundamental properties of these interfaces are governed by the presence of the interfacial water and its specific structure at the surface. Calcite is particularly interesting as a dominant rock-forming mineral in the earth's crust. Here, we combine atomic force microscopy, sum-frequency generation spectroscopy, and molecular dynamics simulations to determine the position and orientation of the water molecules in the hydration layers of the calcite surface with high resolution. While atomic force microscopy provides detailed information about the position of the water molecules at the interface, sum-frequency generation spectroscopy can deduce the orientation of the water molecules. Comparison of the calcite-water interface to the interfaces of magnesite-water, magnesite-ethanol, and calcite-ethanol reveals a comprehensive picture with opposite water orientations in the first and second layer of the interface, which is corroborated by the molecular dynamics simulations.
Collapse
Affiliation(s)
- Hagen Söngen
- Physical
Chemistry I, Faculty of Chemistry, Bielefeld
University, Universitätsstrasse 25, 33615 Bielefeld, Germany
| | - Simon J. Schlegel
- Max
Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Ygor Morais Jaques
- Department
of Applied Physics, Aalto University, Helsinki, FI-00076, Finland
| | - John Tracey
- Department
of Applied Physics, Aalto University, Helsinki, FI-00076, Finland
| | - Saman Hosseinpour
- Max
Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Doyk Hwang
- Max
Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Ralf Bechstein
- Physical
Chemistry I, Faculty of Chemistry, Bielefeld
University, Universitätsstrasse 25, 33615 Bielefeld, Germany
| | - Mischa Bonn
- Max
Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Adam S. Foster
- Department
of Applied Physics, Aalto University, Helsinki, FI-00076, Finland
- Nano
Life Science Institute (WPI-NanoLSI), Kanazawa
University, Kanazawa 920-1192, Japan
| | - Angelika Kühnle
- Physical
Chemistry I, Faculty of Chemistry, Bielefeld
University, Universitätsstrasse 25, 33615 Bielefeld, Germany
| | - Ellen H.G. Backus
- Max
Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
- Department
of Physical Chemistry, University of Vienna, Währinger Strasse 42, 1090 Vienna Austria
| |
Collapse
|
7
|
Abstract
The ubiquity of aqueous solutions in contact with charged surfaces and the realization that the molecular-level details of water-surface interactions often determine interfacial functions and properties relevant in many natural processes have led to intensive research. Even so, many open questions remain regarding the molecular picture of the interfacial organization and preferential alignment of water molecules, as well as the structure of water molecules and ion distributions at different charged interfaces. While water, solutes and charge are present in each of these systems, the substrate can range from living tissues to metals. This diversity in substrates has led to different communities considering each of these types of aqueous interface. In this Review, by considering water in contact with metals, oxides and biomembranes, we show the essential similarity of these disparate systems. While in each case the classical mean-field theories can explain many macroscopic and mesoscopic observations, it soon becomes apparent that such theories fail to explain phenomena for which molecular properties are relevant, such as interfacial chemical conversion. We highlight the current knowledge and limitations in our understanding and end with a view towards future opportunities in the field.
Collapse
|
8
|
Ranawat YS, Jaques YM, Foster AS. Predicting hydration layers on surfaces using deep learning. NANOSCALE ADVANCES 2021; 3:3447-3453. [PMID: 36133729 PMCID: PMC9419798 DOI: 10.1039/d1na00253h] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/03/2021] [Accepted: 05/03/2021] [Indexed: 06/16/2023]
Abstract
Characterisation of the nanoscale interface formed between minerals and water is essential to the understanding of natural processes, such as biomineralization, and to develop new technologies where function is dominated by the mineral-water interface. Atomic force microscopy offers the potential to characterize solid-liquid interfaces in high-resolution, with several experimental and theoretical studies offering molecular scale resolution by linking measurements directly to water density on the surface. However, the theoretical techniques used to interpret such results are computationally intensive and development of the approach has been limited by interpretation challenges. In this work, we develop a deep learning architecture to learn the solid-liquid interface of polymorphs of calcium carbonate, allowing for the rapid predictions of density profiles with reasonable accuracy.
Collapse
Affiliation(s)
| | - Ygor M Jaques
- Department of Applied Physics, Aalto University Finland
| | - Adam S Foster
- Department of Applied Physics, Aalto University Finland
- WPI Nano Life Science Institute (WPI-NanoLSI), Kanazawa University Kakuma-machi Kanazawa 920-1192 Japan
| |
Collapse
|
9
|
Hashimoto K, Amano KI, Nishi N, Onishi H, Sakka T. Comparison of atomic force microscopy force curve and solvation structure studied by integral equation theory. J Chem Phys 2021; 154:164702. [PMID: 33940841 DOI: 10.1063/5.0046600] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Atomic force microscopy can observe structures of liquids (solvents) on solid surfaces as oscillating force curves. The oscillation originates from the solvation force, which is affected by the interaction between the probe, substrate, and solvents. To investigate the effects of the interactions on the force curve, we calculated the force curves by integral equation theory with various probe and substrate conditions. The probe solvophilicity affected the force curves more than the substrate solvophilicity in our calculation, and its reason is qualitatively explained by the amount of the desolvated solvents. We evaluated the probes and parameters in terms of the qualitative estimation of the number density distribution of the solvent on the wall. The negative of the force curve's derivative with respect to the surface separation reflected the number density distribution better than the force curve. This parameter is based on the method that is proposed previously by Amano et al. [Phys. Chem. Chem. Phys. 18, 15534 (2016)]. The normalized frequency shift can also be used for the qualitative estimation of the number density distribution if the cantilever amplitude is small. Solvophobic probes reflected the number density distribution better than the solvophilic probes. Solvophilic probes resulted in larger oscillation amplitudes than solvophobic probes and are suitable for measurements with a high S/N ratio.
Collapse
Affiliation(s)
- Kota Hashimoto
- Department of Energy and Hydrocarbon Chemistry, Graduate School of Engineering, Kyoto University, Kyoto 615-8510, Japan
| | - Ken-Ichi Amano
- Faculty of Agriculture, Meijo University, 1-501 Shiogamaguchi, Tenpaku, Nagoya 468-8502, Japan
| | - Naoya Nishi
- Department of Energy and Hydrocarbon Chemistry, Graduate School of Engineering, Kyoto University, Kyoto 615-8510, Japan
| | - Hiroshi Onishi
- Department of Chemistry, Graduate School of Science, Kobe University, Nada, Kobe, Hyogo 657-8501, Japan
| | - Tetsuo Sakka
- Department of Energy and Hydrocarbon Chemistry, Graduate School of Engineering, Kyoto University, Kyoto 615-8510, Japan
| |
Collapse
|
10
|
Uhlig MR, Benaglia S, Thakkar R, Comer J, Garcia R. Atomically resolved interfacial water structures on crystalline hydrophilic and hydrophobic surfaces. NANOSCALE 2021; 13:5275-5283. [PMID: 33624666 DOI: 10.1039/d1nr00351h] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Hydration layers are formed on hydrophilic crystalline surfaces immersed in water. Their existence has also been predicted for hydrophobic surfaces, yet the experimental evidence is controversial. Using 3D-AFM imaging, we probed the interfacial water structure of hydrophobic and hydrophilic surfaces with atomic-scale spatial resolution. We demonstrate that the atomic-scale structure of interfacial water on crystalline surfaces presents two antagonistic arrangements. On mica, a common hydrophilic crystalline surface, the interface is characterized by the formation of 2 to 3 hydration layers separated by approximately 0.3 nm. On hydrophobic surfaces such as graphite or hexagonal boron nitride (h-BN), the interface is characterized by the formation of 2 to 4 layers separated by about 0.5 nm. The latter interlayer distance indicates that water molecules are expelled from the vicinity of the surface and replaced by hydrocarbon molecules. This creates a new 1.5-2 nm thick interface between the hydrophobic surface and the bulk water. Molecular dynamics simulations reproduced the experimental data and confirmed the above interfacial water structures.
Collapse
Affiliation(s)
- Manuel R Uhlig
- Instituto de Ciencia de Materiales de Madrid, CSIC, c/Sor Juana Inés de la Cruz 3, 28049 Madrid, Spain.
| | - Simone Benaglia
- Instituto de Ciencia de Materiales de Madrid, CSIC, c/Sor Juana Inés de la Cruz 3, 28049 Madrid, Spain.
| | - Ravindra Thakkar
- Nanotechnology Innovation Center of Kansas State, Department of Anatomy and Physiology, Kansas State University, Manhattan, Kansas 66506, USA
| | - Jeffrey Comer
- Nanotechnology Innovation Center of Kansas State, Department of Anatomy and Physiology, Kansas State University, Manhattan, Kansas 66506, USA
| | - Ricardo Garcia
- Instituto de Ciencia de Materiales de Madrid, CSIC, c/Sor Juana Inés de la Cruz 3, 28049 Madrid, Spain.
| |
Collapse
|
11
|
Subnanometer-scale imaging of nanobio-interfaces by frequency modulation atomic force microscopy. Biochem Soc Trans 2020; 48:1675-1682. [PMID: 32779720 DOI: 10.1042/bst20200155] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2020] [Revised: 07/15/2020] [Accepted: 07/17/2020] [Indexed: 11/17/2022]
Abstract
Recently, there have been significant advancements in dynamic-mode atomic force microscopy (AFM) for biological applications. With frequency modulation AFM (FM-AFM), subnanometer-scale surface structures of biomolecules such as secondary structures of proteins, phosphate groups of DNAs, and lipid-ion complexes have been directly visualized. In addition, three-dimensional AFM (3D-AFM) has been developed by combining a high-resolution AFM technique with a 3D tip scanning method. This method enabled visualization of 3D distributions of water (i.e. hydration structures) with subnanometer-scale resolution on various biological molecules such as lipids, proteins, and DNAs. Furthermore, 3D-AFM also allows visualization of subnanometer-scale 3D distributions of flexible surface structures such as thermally fluctuating lipid headgroups. Such a direct local information at nano-bio interfaces can play a critical role in determining the atomic- or molecular-scale model to explain interfacial structures and functions. Here, we present an overview of these recent advancements in the dynamic-mode AFM techniques and their biological applications.
Collapse
|
12
|
Teduka Y, Sasahara A, Onishi H. Atomic Force Microscopy Imaging of Crystalline Sucrose in Alcohols. ACS OMEGA 2020; 5:2569-2574. [PMID: 32095681 PMCID: PMC7033667 DOI: 10.1021/acsomega.9b02660] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/18/2019] [Accepted: 01/24/2020] [Indexed: 06/10/2023]
Abstract
Imaging nanometer- or molecule-scale topography has been achieved by dynamic atomic force microscopy (AFM) when a solid object of interest is damaged by vacuum exposure or electron irradiation. Imaging in a liquid offers a means to remove contaminations from the surface scanned using the microscope tip when the object is soluble to the surrounding liquid, typically water. In the present study, we attempted to take topographic images of crystalline sucrose. A problem arose due to the high solubility of this compound to water. Cantilever oscillation could not be excited in the saturated, viscous aqueous solution. By using n-hexanol instead of water, the solubility in the solvent and thus viscosity of the solution were reduced sufficiently to excite cantilever oscillation. Single-height steps and sucrose molecules were recognized in the images and thereby recorded on the (001)-oriented facets of sucrose crystals. Furthermore, two-dimensional distribution of liquid-induced force pushing or pulling the tip was mapped on planes perpendicular to the hexanol-sucrose interface. Observed uneven force distributions indicated liquid hexanol structured on the corrugated surface of sucrose. The viscosity tuning demonstrated here, which is not limited to hexanol instead of water, extends the range of liquid-solid interfaces to be probed by dynamic AFM.
Collapse
|
13
|
Imai M, Yokota Y, Tanabe I, Inagaki K, Morikawa Y, Fukui KI. Correlation between mobility and the hydrogen bonding network of water at an electrified-graphite electrode using molecular dynamics simulation. Phys Chem Chem Phys 2020; 22:1767-1773. [DOI: 10.1039/c9cp06013h] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Mobility and hydrogen bonding network of water at a graphite electrode: effects of dissolved ions and applied potential.
Collapse
Affiliation(s)
- Masaya Imai
- Department of Materials Engineering Science
- Graduate School of Engineering Science
- Osaka University
- Toyonaka
- Japan
| | - Yasuyuki Yokota
- Surface and Interface Science Laboratory
- RIKEN
- Saitama 351-0198
- Japan
| | - Ichiro Tanabe
- Department of Materials Engineering Science
- Graduate School of Engineering Science
- Osaka University
- Toyonaka
- Japan
| | - Kouji Inagaki
- Department of Precision Science and Technology
- Graduate School of Engineering
- Osaka University
- 2-1 Yamada-oka
- Suita
| | - Yoshitada Morikawa
- Department of Precision Science and Technology
- Graduate School of Engineering
- Osaka University
- 2-1 Yamada-oka
- Suita
| | - Ken-ichi Fukui
- Department of Materials Engineering Science
- Graduate School of Engineering Science
- Osaka University
- Toyonaka
- Japan
| |
Collapse
|
14
|
Söngen H, Jaques YM, Spijker P, Marutschke C, Klassen S, Hermes I, Bechstein R, Zivanovic L, Tracey J, Foster AS, Kühnle A. Three-dimensional solvation structure of ethanol on carbonate minerals. BEILSTEIN JOURNAL OF NANOTECHNOLOGY 2020; 11:891-898. [PMID: 32566439 PMCID: PMC7296196 DOI: 10.3762/bjnano.11.74] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/13/2020] [Accepted: 05/13/2020] [Indexed: 05/12/2023]
Abstract
Calcite and magnesite are important mineral constituents of the earth's crust. In aqueous environments, these carbonates typically expose their most stable cleavage plane, the (10.4) surface. It is known that these surfaces interact with a large variety of organic molecules, which can result in surface restructuring. This process is decisive for the formation of biominerals. With the development of 3D atomic force microscopy (AFM) it is now possible to image solid-liquid interfaces with unprecedented molecular resolution. However, the majority of 3D AFM studies have been focused on the arrangement of water at carbonate surfaces. Here, we present an analysis of the assembly of ethanol - an organic molecule with a single hydroxy group - at the calcite and magnesite (10.4) surfaces by using high-resolution 3D AFM and molecular dynamics (MD) simulations. Within a single AFM data set we are able to resolve both the first laterally ordered solvation layer of ethanol on the calcite surface as well as the following solvation layers that show no lateral order. Our experimental results are in excellent agreement with MD simulations. The qualitative difference in the lateral order can be understood by the differing chemical environment: While the first layer adopts specific binding positions on the ionic carbonate surface, the second layer resides on top of the organic ethyl layer. A comparison of calcite and magnesite reveals a qualitatively similar ethanol arrangement on both carbonates, indicating the general nature of this finding.
Collapse
Affiliation(s)
- Hagen Söngen
- Physical Chemistry I, Faculty of Chemistry, Bielefeld University, Universitätsstraße 25, 33615 Bielefeld, Germany
- Institute of Physical Chemistry, Johannes Gutenberg University Mainz, Duesbergweg 10 - 14, 55099 Mainz, Germany
- Graduate School Materials Science in Mainz, Staudingerweg 9, 55128 Mainz, Germany
| | - Ygor Morais Jaques
- Department of Applied Physics, Aalto University, Helsinki FI-00076, Finland
| | - Peter Spijker
- Department of Applied Physics, Aalto University, Helsinki FI-00076, Finland
| | - Christoph Marutschke
- Institute of Physical Chemistry, Johannes Gutenberg University Mainz, Duesbergweg 10 - 14, 55099 Mainz, Germany
| | - Stefanie Klassen
- Institute of Physical Chemistry, Johannes Gutenberg University Mainz, Duesbergweg 10 - 14, 55099 Mainz, Germany
| | - Ilka Hermes
- Institute of Physical Chemistry, Johannes Gutenberg University Mainz, Duesbergweg 10 - 14, 55099 Mainz, Germany
| | - Ralf Bechstein
- Physical Chemistry I, Faculty of Chemistry, Bielefeld University, Universitätsstraße 25, 33615 Bielefeld, Germany
- Institute of Physical Chemistry, Johannes Gutenberg University Mainz, Duesbergweg 10 - 14, 55099 Mainz, Germany
| | - Lidija Zivanovic
- Department of Applied Physics, Aalto University, Helsinki FI-00076, Finland
| | - John Tracey
- Department of Applied Physics, Aalto University, Helsinki FI-00076, Finland
| | - Adam S Foster
- Graduate School Materials Science in Mainz, Staudingerweg 9, 55128 Mainz, Germany
- Department of Applied Physics, Aalto University, Helsinki FI-00076, Finland
- WPI Nano Life Science Institute (WPI-NanoLSI), Kanazawa University, Kakumamachi, Kanazawa 920-1192, Japan
| | - Angelika Kühnle
- Physical Chemistry I, Faculty of Chemistry, Bielefeld University, Universitätsstraße 25, 33615 Bielefeld, Germany
- Institute of Physical Chemistry, Johannes Gutenberg University Mainz, Duesbergweg 10 - 14, 55099 Mainz, Germany
- Graduate School Materials Science in Mainz, Staudingerweg 9, 55128 Mainz, Germany
| |
Collapse
|
15
|
Integral equation theory based method to determine number density distribution of colloidal particles near a substrate using a force curve from colloidal probe atomic force microscopy. J Mol Liq 2019. [DOI: 10.1016/j.molliq.2019.111584] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
|
16
|
Moriguchi S, Tsujimoto T, Sasahara A, Kokawa R, Onishi H. Nanometer-Scale Distribution of a Lubricant Modifier on Iron Films: A Frequency-Modulation Atomic Force Microscopy Study Combined with a Friction Test. ACS OMEGA 2019; 4:17593-17599. [PMID: 31656935 PMCID: PMC6812132 DOI: 10.1021/acsomega.9b02821] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/01/2019] [Accepted: 09/24/2019] [Indexed: 06/10/2023]
Abstract
Liquid lubricants used in mechanical applications are low-vapor-pressure hydrocarbons modified with a small quantity of polar compounds. The polar modifiers adsorbed on the surface of sliding solids dominate the friction properties when the sliding surfaces are in close proximity. However, a few methods are available for the characterization of the adsorbed modifiers of a nanometer-scale thickness. In this study, we applied frequency-modulation atomic force microscopy to evaluate the vertical and lateral density distributions of the adsorbed modifier in a real lubricant, namely, poly-α-olefin (PAO) modified with an orthophosphoric acid oleyl ester. The liquid-induced force on the probing tip was mapped on a plane that was perpendicular to the lubricant-iron interface with a force sensitivity on the order of 10 pN. The PAO in the absence of the ester modifier was directly exposed to the film, which produced a few liquid layers parallel to the film surface with layer-to-layer distances of 0.6-0.7 nm. A monomolecular layer of the modifier was intermittently adsorbed with increasing ester concentration in the bulk lubricant, with complete coverage seen at 20 ppm. The C18H35 chains of the oleyl esters fluctuating in the lubricant produced a repulsive force on the tip, which monotonically decayed with the tip-to-surface distance. The dynamic friction coefficient of sliding steel-lubricant-steel interfaces, which was separately determined using a friction tester, was compared with the force map determined on the iron film immersed in the corresponding lubricant. The complete monomolecular layer of the ester modifier on the static lubricant-iron boundary is a requirement for achieving smooth and stable friction at the sliding interface.
Collapse
Affiliation(s)
- Shiho Moriguchi
- Department
of Chemistry, School of Science, Kobe University, Rokko-dai, Nada-ku, Kobe 657-8501, Japan
- Shimadzu
Techno-Research Incorporated, Nishinokyo-shimoaicho, Nakagyo-ku, Kyoto 604-8436, Japan
| | - Teppei Tsujimoto
- JXTG
Nippon Oil & Energy Corporation, Chidoricho, Naka-ku, Yokohama 231-0815, Japan
| | - Akira Sasahara
- Department
of Chemistry, School of Science, Kobe University, Rokko-dai, Nada-ku, Kobe 657-8501, Japan
| | - Ryohei Kokawa
- Shimadzu
Corporation, Nishinokyo-Kuwabaracho, Nakagyo-ku, Kyoto 604-8511, Japan
| | - Hiroshi Onishi
- Department
of Chemistry, School of Science, Kobe University, Rokko-dai, Nada-ku, Kobe 657-8501, Japan
| |
Collapse
|
17
|
Hernández-Muñoz J, Chacón E, Tarazona P. Density functional analysis of atomic force microscopy in a dense fluid. J Chem Phys 2019; 151:034701. [DOI: 10.1063/1.5110366] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023] Open
Affiliation(s)
- Jose Hernández-Muñoz
- Departamento de Física Teórica de la Materia Condensada, IFIMAC Condensed Matter Physics Center, Universidad Autónoma de Madrid, Madrid 28049, Spain
| | - Enrique Chacón
- Instituto de Ciencia de Materiales de Madrid, Consejo Superior de Investigaciones Científicas, Madrid 28049, Spain
| | - Pedro Tarazona
- Departamento de Física Teórica de la Materia Condensada, IFIMAC Condensed Matter Physics Center, Universidad Autónoma de Madrid, Madrid 28049, Spain
| |
Collapse
|
18
|
Honda H, Sasahara A, Onishi H. Porphyrins on mica: Atomic force microscopy imaging in organic solvents. Colloids Surf A Physicochem Eng Asp 2019. [DOI: 10.1016/j.colsurfa.2018.10.069] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
|
19
|
Fukuma T, Garcia R. Atomic- and Molecular-Resolution Mapping of Solid-Liquid Interfaces by 3D Atomic Force Microscopy. ACS NANO 2018; 12:11785-11797. [PMID: 30422619 DOI: 10.1021/acsnano.8b07216] [Citation(s) in RCA: 78] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Hydration layers are ubiquitous in life and technology. Hence, interfacial aqueous layers have a central role in a wide range of phenomena from materials science to molecular and cell biology. A complete understanding of those processes requires, among other things, the development of very-sensitive and high-resolution instruments. Three-dimensional atomic force microscopy (3D-AFM) represents the latest and most successful attempt to generate atomically resolved three-dimensional images of solid-liquid interfaces. This review provides an overview of the 3D-AFM operating principles and its underlying physics. We illustrate and explain the capability of the instrument to resolve atomic defects on crystalline surfaces immersed in liquid. We also illustrate some of its applications to imaging the hydration structures on DNA or proteins. In the last section, we discuss some perspectives on emerging applications in materials science and molecular biology.
Collapse
Affiliation(s)
- Takeshi Fukuma
- Nano Life Science Institute (WPI-NanoLSI) , Kanazawa University , Kanazawa 920-1192 , Japan
| | - Ricardo Garcia
- Materials Science Factory , Instituto de Ciencia de Materiales de Madrid (ICMM) , 28049 Madrid , Spain
| |
Collapse
|
20
|
Fujita A, Kobayashi K, Yamada H. Investigation of Local Hydration Structures of Alkanethiol Self-Assembled Monolayers with Different Molecular Structures by FM-AFM. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2018; 34:15189-15194. [PMID: 30431278 DOI: 10.1021/acs.langmuir.8b03052] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Hydration structures play crucial roles in a wide variety of chemical and biological phenomena. However, the key factors that determine a hydration structure remain an open question. Most recent studies have focused on the electrostatic interactions between the surface charges and dipoles of water molecules, which are determined by the atomic/ionic species of the outermost solid surface, as the dominating factor. The number of studies on the correlation between the hydration structure and the atomic-scale surface corrugation has been limited. In this study, we investigated the hydration structures of alkanethiol self-assembled monolayers terminated with a hydroxyl group using frequency-modulated atomic force microscopy. We observed two molecular structures, namely, the (√3 × √3) R30° structure and the c(4 × 2) superlattice structure, and found that their hydration structures are different mainly because of the slight differences in their molecular arrangements. This result suggests that a slight difference in the molecular/atomic arrangements as well as the atomic/ionic species in the outermost solid surface strongly influences the local hydration structures.
Collapse
Affiliation(s)
- Akito Fujita
- Department of Electronic Science and Engineering , Kyoto University , Kyoto 615-8510 , Japan
| | - Kei Kobayashi
- Department of Electronic Science and Engineering , Kyoto University , Kyoto 615-8510 , Japan
| | - Hirofumi Yamada
- Department of Electronic Science and Engineering , Kyoto University , Kyoto 615-8510 , Japan
| |
Collapse
|
21
|
Zhang Z, Ryu S, Ahn Y, Jang J. Molecular features of hydration layers probed by atomic force microscopy. Phys Chem Chem Phys 2018; 20:30492-30501. [PMID: 30511076 DOI: 10.1039/c8cp06126b] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
Structurally-ordered layers of water are universally formed on a solid surface in aqueous solution or under ambient conditions. Although such hydration layers are commonly probed via atomic force microscopy (AFM), the current understanding on how the hydration layers manifest themselves in an AFM experiment is far from complete. By using molecular dynamics simulation, we investigate the hydration layers on a hydrophilic or hydrophobic surface probed by a nanoscale tip. We study the density and molecular orientation of water, the free energy, and the force on the tip by varying the tip-surface distance. The force-distance curve oscillates due to the transition between the mono-, bi-, and tri-layers of water confined between the tip and the surface. If both the tip and the surface are hydrophobic, water confined between the tip and the surface evaporates due to the dewetting transition, giving a hydrophobic force without oscillation. The periodicity of oscillation in the force differs from the structural periodicity of water. With a close proximity of the tip, the molecular dipoles align parallel to the surface, regardless of whether the tip and the surface are hydrophilic or hydrophobic.
Collapse
Affiliation(s)
- Zhengqing Zhang
- Department of Nanoenergy Engineering, Pusan National University, Busan 46241, South Korea.
| | | | | | | |
Collapse
|
22
|
Fukui KI. Development of Local Analysis Technique of Electric Double Layer at Electrode Interfaces and Its Application to Ionic Liquid Interfaces. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2018. [DOI: 10.1246/bcsj.20180086] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Affiliation(s)
- Ken-ichi Fukui
- Department of Materials Engineering Science, Graduate School of Engineering Science, Osaka University, 1-3 Machikaneyama, Toyonaka, Osaka 560-8531, Japan
| |
Collapse
|
23
|
Schlesinger I, Sivan U. Three-Dimensional Characterization of Layers of Condensed Gas Molecules Forming Universally on Hydrophobic Surfaces. J Am Chem Soc 2018; 140:10473-10481. [DOI: 10.1021/jacs.8b04815] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Itai Schlesinger
- Department of Physics and the Russell Berrie Nanotechnology Institute, Technion − Israel Institute of Technology, Haifa 3200003, Israel
| | - Uri Sivan
- Department of Physics and the Russell Berrie Nanotechnology Institute, Technion − Israel Institute of Technology, Haifa 3200003, Israel
| |
Collapse
|
24
|
Söngen H, Reischl B, Miyata K, Bechstein R, Raiteri P, Rohl AL, Gale JD, Fukuma T, Kühnle A. Resolving Point Defects in the Hydration Structure of Calcite (10.4) with Three-Dimensional Atomic Force Microscopy. PHYSICAL REVIEW LETTERS 2018; 120:116101. [PMID: 29601750 DOI: 10.1103/physrevlett.120.116101] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2017] [Indexed: 05/26/2023]
Abstract
It seems natural to assume that defects at mineral surfaces critically influence interfacial processes such as the dissolution and growth of minerals in water. The experimental verification of this claim, however, is challenging and requires real-space methods with utmost spatial resolution, such as atomic force microscopy (AFM). While defects at mineral-water interfaces have been resolved in 2D AFM images before, the perturbation of the surrounding hydration structure has not yet been analyzed experimentally. In this Letter, we demonstrate that point defects on the most stable and naturally abundant calcite (10.4) surface can be resolved using high-resolution 3D AFM-even within the fifth hydration layer. Our analysis of the hydration structure surrounding the point defect shows a perturbation of the hydration with a lateral extent of approximately one unit cell. These experimental results are corroborated by molecular dynamics simulations.
Collapse
Affiliation(s)
- Hagen Söngen
- Institute of Physical Chemistry, Johannes Gutenberg University Mainz, Duesbergweg 10-14, 55099 Mainz, Germany
- Graduate School Materials Science in Mainz, Staudinger Weg 9, 55128 Mainz, Germany
| | - Bernhard Reischl
- Curtin Institute for Computation and Department of Chemistry, Curtin University, P.O. Box U1987, Perth, Western Australia 6845, Australia
| | - Kazuki Miyata
- Division of Electrical Engineering and Computer Science, Kanazawa University, Kanazawa 920-1192, Japan
| | - Ralf Bechstein
- Institute of Physical Chemistry, Johannes Gutenberg University Mainz, Duesbergweg 10-14, 55099 Mainz, Germany
| | - Paolo Raiteri
- Curtin Institute for Computation and Department of Chemistry, Curtin University, P.O. Box U1987, Perth, Western Australia 6845, Australia
- The Institute for Geoscience Research (TIGeR), Curtin University, P.O. Box U1987, Perth, Western Australia 6845, Australia
| | - Andrew L Rohl
- Curtin Institute for Computation and Department of Chemistry, Curtin University, P.O. Box U1987, Perth, Western Australia 6845, Australia
| | - Julian D Gale
- Curtin Institute for Computation and Department of Chemistry, Curtin University, P.O. Box U1987, Perth, Western Australia 6845, Australia
- The Institute for Geoscience Research (TIGeR), Curtin University, P.O. Box U1987, Perth, Western Australia 6845, Australia
| | - Takeshi Fukuma
- Division of Electrical Engineering and Computer Science, Kanazawa University, Kanazawa 920-1192, Japan
- WPI Nano Life Science Institute (WPI-NanoLSI), Kanazawa University, Kanazawa 920-1192, Japan
| | - Angelika Kühnle
- Institute of Physical Chemistry, Johannes Gutenberg University Mainz, Duesbergweg 10-14, 55099 Mainz, Germany
- Physical Chemistry I, Bielefeld University, Universitätsstraße 25, 33615 Bielefeld, Germany
| |
Collapse
|
25
|
Yokota Y, Miyamoto H, Imanishi A, Inagaki K, Morikawa Y, Fukui KI. Structural and dynamic properties of 1-butyl-3-methylimidazolium bis(trifluoromethanesulfonyl)imide/mica and graphite interfaces revealed by molecular dynamics simulation. Phys Chem Chem Phys 2018; 20:6668-6676. [PMID: 29457158 DOI: 10.1039/c7cp07313e] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
It has been observed that the properties of room temperature ionic liquids near solid substrates are different from those of bulk liquids, and these properties play an important role in the development of catalysts, lubricants, and electrochemical devices. In this paper, we report microscopic studies of ionic liquid/solid interfaces performed using molecular dynamics simulations. The structural and dynamic properties of 1-butyl-3-methylimidazolium bis(trifluoromethanesulfonyl)imide (BMIM-TFSI) on mica and graphite interfaces were thoroughly investigated to elucidate the microscopic origins of the formation of layered structures at the interfaces. Our investigation included the observation of structural and orientational changes of ions as a function of distance from the surfaces, and contour mappings of ions parallel and perpendicular to the surfaces. By virtue of such detailed analyses, we found that, during the 5 ns simulation, the closest layer of BMIM-TFSI behaves as a two-dimensional ionic crystal on mica and as a liquid or liquid crystal on graphite.
Collapse
Affiliation(s)
- Yasuyuki Yokota
- Surface and Interface Science Laboratory, RIKEN, Wako, Saitama 351-0198, Japan.
| | | | | | | | | | | |
Collapse
|
26
|
Hirayama T, Kawamura R, Fujino K, Matsuoka T, Komiya H, Onishi H. Cross-Sectional Imaging of Boundary Lubrication Layer Formed by Fatty Acid by Means of Frequency-Modulation Atomic Force Microscopy. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2017; 33:10492-10500. [PMID: 28960989 DOI: 10.1021/acs.langmuir.7b02528] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
To observe in situ the adsorption of fatty acid onto metal surfaces, cross-sectional images of the adsorption layer were acquired by frequency-modulation atomic force microscopy (FM-AFM). Hexadecane and palmitic acid were used as the base oil and typical fatty acid, respectively. A Cu-coated silicon wafer was prepared as the target substrate. The solvation structure formed by hexadecane molecules at the interface between the Cu substrate and the hexadecane was observed, and the layer pitch was found to be about 0.6 nm, which corresponds to the height of hexadecane molecules. This demonstrates that hexadecane molecules physically adsorbed onto the surface due to van der Waals forces with lying orientation because hexadecane is a nonpolar hydrocarbon. When hexadecane with palmitic acid was put on the Cu substrate instead of pure hexadecane, an adsorption layer of palmitic acid was observed at the interface. The layer pitch was about 2.5-2.8 nm, which matches the chain length of palmitic acid molecules well. This indicates that the original adsorption layer was monolayer or single bilayer in the local area. In addition, a cross-sectional image captured 1 h after observation started to reveal that the adsorbed additive layer gradually grew up to be thicker than about 20 nm due to an external stimulus, such as cantilever oscillation. This is the first report of in situ observation of an adsorbed layer by FM-AFM in the tribology field and demonstrates that FM-AFM is useful for clarifying the actual boundary lubrication mechanism.
Collapse
Affiliation(s)
- Tomoko Hirayama
- PRESTO, Japan Science and Technology Agency 7 Gobancho, Chiyoda-ku, Tokyo 102-0076, Japan
| | | | | | | | | | - Hiroshi Onishi
- Department of Chemistry, Kobe University 1-1 Rokkodai-cho, Nada-ku, Kobe, Hyogo 657-8501, Japan
| |
Collapse
|
27
|
Minato T, Araki Y, Umeda K, Yamanaka T, Okazaki KI, Onishi H, Abe T, Ogumi Z. Interface structure between tetraglyme and graphite. J Chem Phys 2017; 147:124701. [DOI: 10.1063/1.4996226] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Taketoshi Minato
- Office of Society-Academia Collaboration for Innovation, Kyoto University, Katsura, Nishikyo, Kyoto 615-8510,
Japan
| | - Yuki Araki
- Department of Chemistry, School of Science, Kobe University, Nada-ku, Kobe 657-8501, Japan
- Department of Electronic Science and Engineering, Kyoto University, Katsura, Nishikyo, Kyoto 615-8510,
Japan
| | - Kenichi Umeda
- Department of Advanced Material Science, The University of Tokyo, Kashiwa, Chiba 277-8561,
Japan
| | - Toshiro Yamanaka
- Office of Society-Academia Collaboration for Innovation, Kyoto University, Katsura, Nishikyo, Kyoto 615-8510,
Japan
| | - Ken-ichi Okazaki
- Office of Society-Academia Collaboration for Innovation, Kyoto University, Uji, Kyoto 611-0011,
Japan
| | - Hiroshi Onishi
- Department of Chemistry, School of Science, Kobe University, Nada-ku, Kobe 657-8501, Japan
| | - Takeshi Abe
- Graduate School of Global Environmental Studies, Kyoto University, Katsura, Nishikyo, Kyoto 615-8510,
Japan
| | - Zempachi Ogumi
- Office of Society-Academia Collaboration for Innovation, Kyoto University, Uji, Kyoto 611-0011,
Japan
| |
Collapse
|
28
|
Miyazawa K, Watkins M, Shluger AL, Fukuma T. Influence of ions on two-dimensional and three-dimensional atomic force microscopy at fluorite-water interfaces. NANOTECHNOLOGY 2017; 28:245701. [PMID: 28481216 DOI: 10.1088/1361-6528/aa7188] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Recent advancement in liquid-environment atomic force microscopy (AFM) has enabled us to visualize three-dimensional (3D) hydration structures as well as two-dimensional (2D) surface structures with subnanometer-scale resolution at solid-water interfaces. However, the influence of ions present in solution on the 2D- and 3D-AFM measurements has not been well understood. In this study, we perform atomic-scale 2D- and 3D-AFM measurements at fluorite-water interfaces in pure water and a supersaturated solution of fluorite. The images obtained in these two environments are compared to understand the influence of the ions in solution on these measurements. In the 2D images, we found clear difference in the nanoscale structures but no significant difference in the atomic-scale contrasts. However, the 3D force images show clear difference in the subnanometer-scale contrasts. The force contrasts measured in pure water largely agree with those expected from the molecular dynamics simulation and the solvent tip approximation model. In the supersaturated solution, an additional force peak is observed over the negatively charged fluorine ion site. This location suggests that the observed force peak may originate from cations adsorbed on the fluorite surface. These results demonstrate that the ions can significantly alter the subnanometer-scale force contrasts in the 3D-AFM images.
Collapse
Affiliation(s)
- K Miyazawa
- Division of Electrical Engineering and Computer Science, Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan
| | | | | | | |
Collapse
|
29
|
Amano KI, Yokota Y, Ichii T, Yoshida N, Nishi N, Katakura S, Imanishi A, Fukui KI, Sakka T. A relationship between the force curve measured by atomic force microscopy in an ionic liquid and its density distribution on a substrate. Phys Chem Chem Phys 2017; 19:30504-30512. [DOI: 10.1039/c7cp06948k] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A relationship between the force curve measured in an ionic liquid and the solvation structure is studied. Applying the obtained relationship, candidates of the solvation structure are estimated from a measured force curve.
Collapse
Affiliation(s)
- Ken-ichi Amano
- Department of Energy and Hydrocarbon Chemistry
- Graduate School of Engineering
- Kyoto University
- Kyoto 615-8510
- Japan
| | - Yasuyuki Yokota
- Surface and Interface Science Laboratory
- RIKEN
- Saitama 351-0198
- Japan
| | - Takashi Ichii
- Department of Materials Science and Engineering
- Kyoto University
- Kyoto
- Japan
| | - Norio Yoshida
- Department of Chemistry, Graduate School of Science
- Kyushu University
- Fukuoka 819-0395
- Japan
| | - Naoya Nishi
- Department of Energy and Hydrocarbon Chemistry
- Graduate School of Engineering
- Kyoto University
- Kyoto 615-8510
- Japan
| | - Seiji Katakura
- Department of Energy and Hydrocarbon Chemistry
- Graduate School of Engineering
- Kyoto University
- Kyoto 615-8510
- Japan
| | - Akihito Imanishi
- Department of Materials Engineering Science
- Graduate School of Engineering Science
- Osaka University
- 1-3 Machikaneyama
- Toyonaka
| | - Ken-ichi Fukui
- Department of Materials Engineering Science
- Graduate School of Engineering Science
- Osaka University
- 1-3 Machikaneyama
- Toyonaka
| | - Tetsuo Sakka
- Department of Energy and Hydrocarbon Chemistry
- Graduate School of Engineering
- Kyoto University
- Kyoto 615-8510
- Japan
| |
Collapse
|
30
|
Ricci M, Quinlan RA, Voïtchovsky K. Sub-nanometre mapping of the aquaporin-water interface using multifrequency atomic force microscopy. SOFT MATTER 2016; 13:187-195. [PMID: 27373564 DOI: 10.1039/c6sm00751a] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
Aquaporins are integral membrane proteins that regulate the transport of water and small molecules in and out of the cell. In eye lens tissue, circulation of water, ions and metabolites is ensured by a microcirculation system in which aquaporin-0 (AQP0) plays a central role. AQP0 allows water to flow beyond the diffusion limit through lens membranes. AQP0 naturally arranges in a square lattice. The malfunction of AQP0 is related to numerous diseases such as cataracts. Despite considerable research into its structure, function and dynamics, the interface between the protein and the surrounding liquid and the effect of the lattice arrangement on the behaviour of water at the interface with the membrane are still not fully understood. Here we use a multifrequency atomic force microscopy (AFM) approach to map both the liquid at the interface with AQP0 and the protein itself with sub-nanometer resolution. Imaging using the fundamental eigenmode of the AFM cantilever probes mainly the interfacial water at the surface of the membrane. The results highlight a well-defined region that surrounds AQP0 tetramers and where water exhibits a higher affinity for the protein. Imaging in the second eigenmode is dominated by the mechanical response of the protein and provides sub-molecular details of the protein surface and the sub-surface structure. The relationship between modes and harmonics is also examined.
Collapse
Affiliation(s)
- Maria Ricci
- Biological and Soft Systems, Cavendish Laboratory, Cambridge University, Cambridge, UK
| | - Roy A Quinlan
- School of Biological and Biomedical Sciences, Durham University, Durham, UK.
| | | |
Collapse
|
31
|
Amano KI, Iwaki M, Hashimoto K, Fukami K, Nishi N, Takahashi O, Sakka T. Number Density Distribution of Small Particles around a Large Particle: Structural Analysis of a Colloidal Suspension. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2016; 32:11063-11070. [PMID: 27683951 DOI: 10.1021/acs.langmuir.6b02628] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Some colloidal suspensions contain two types of particles-small and large particles-to improve the lubricating ability, light absorptivity, and so forth. Structural and chemical analyses of such colloidal suspensions are often performed to understand their properties. In a structural analysis study, the observation of the number density distribution of small particles around a large particle (gLS) is difficult because these particles are randomly moving within the colloidal suspension by Brownian motion. We obtain gLS using the data from a line optical tweezer (LOT) that can measure the potential of mean force between two large colloidal particles (ΦLL). We propose a theory that transforms ΦLL into gLS. The transform theory is explained in detail and tested. We demonstrate for the first time that LOT can be used for the structural analysis of a colloidal suspension. LOT combined with the transform theory will facilitate structural analyses of the colloidal suspensions, which is important for both understanding colloidal properties and developing colloidal products.
Collapse
Affiliation(s)
- Ken-Ichi Amano
- Department of Energy and Hydrocarbon Chemistry, Graduate School of Engineering, Kyoto University , Kyoto 615-8510, Japan
| | - Mitsuhiro Iwaki
- Quantitative Biology Center, RIKEN , Suita, Osaka 565-0874, Japan
- Graduate School of Frontier Biosciences, Osaka University , Suita, Osaka 565-0874, Japan
| | - Kota Hashimoto
- Department of Energy and Hydrocarbon Chemistry, Graduate School of Engineering, Kyoto University , Kyoto 615-8510, Japan
| | - Kazuhiro Fukami
- Department of Materials Science and Engineering, Graduate School of Engineering, Kyoto University , Kyoto 606-8501, Japan
| | - Naoya Nishi
- Department of Energy and Hydrocarbon Chemistry, Graduate School of Engineering, Kyoto University , Kyoto 615-8510, Japan
| | - Ohgi Takahashi
- Faculty of Pharmaceutical Sciences, Tohoku Medical and Pharmaceutical University , Sendai 981-8558, Japan
| | - Tetsuo Sakka
- Department of Energy and Hydrocarbon Chemistry, Graduate School of Engineering, Kyoto University , Kyoto 615-8510, Japan
| |
Collapse
|
32
|
Tracey J, Miyazawa K, Spijker P, Miyata K, Reischl B, Canova FF, Rohl AL, Fukuma T, Foster AS. Understanding 2D atomic resolution imaging of the calcite surface in water by frequency modulation atomic force microscopy. NANOTECHNOLOGY 2016; 27:415709. [PMID: 27609045 DOI: 10.1088/0957-4484/27/41/415709] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Frequency modulation atomic force microscopy (FM-AFM) experiments were performed on the calcite (10[Formula: see text]4) surface in pure water, and a detailed analysis was made of the 2D images at a variety of frequency setpoints. We observed eight different contrast patterns that reproducibly appeared in different experiments and with different measurement parameters. We then performed systematic free energy calculations of the same system using atomistic molecular dynamics to obtain an effective force field for the tip-surface interaction. By using this force field in a virtual AFM simulation we found that each experimental contrast could be reproduced in our simulations by changing the setpoint, regardless of the experimental parameters. This approach offers a generic method for understanding the wide variety of contrast patterns seen on the calcite surface in water, and is generally applicable to AFM imaging in liquids.
Collapse
Affiliation(s)
- John Tracey
- COMP Centre of Excellence, Department of Applied Physics, Aalto University, Helsinki FI-00076, Finland
| | | | | | | | | | | | | | | | | |
Collapse
|
33
|
Amano KI, Liang Y, Miyazawa K, Kobayashi K, Hashimoto K, Fukami K, Nishi N, Sakka T, Onishi H, Fukuma T. Number density distribution of solvent molecules on a substrate: a transform theory for atomic force microscopy. Phys Chem Chem Phys 2016; 18:15534-44. [PMID: 27080590 DOI: 10.1039/c6cp00769d] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Atomic force microscopy (AFM) in liquids can measure a force curve between a probe and a buried substrate. The shape of the measured force curve is related to hydration structure on the substrate. However, until now, there has been no practical theory that can transform the force curve into the hydration structure, because treatment of the liquid confined between the probe and the substrate is a difficult problem. Here, we propose a robust and practical transform theory, which can generate the number density distribution of solvent molecules on a substrate from the force curve. As an example, we analyzed a force curve measured by using our high-resolution AFM with a newly fabricated ultrashort cantilever. It is demonstrated that the hydration structure on muscovite mica (001) surface can be reproduced from the force curve by using the transform theory. The transform theory will enhance AFM's ability and support structural analyses of solid/liquid interfaces. By using the transform theory, the effective diameter of a real probe apex is also obtained. This result will be important for designing a model probe of molecular scale simulations.
Collapse
Affiliation(s)
- Ken-Ichi Amano
- Department of Energy and Hydrocarbon Chemistry, Graduate School of Engineering, Kyoto University, Kyoto 615-8510, Japan.
| | | | | | | | | | | | | | | | | | | |
Collapse
|
34
|
Kobayashi K, Liang Y, Amano KI, Murata S, Matsuoka T, Takahashi S, Nishi N, Sakka T. Molecular Dynamics Simulation of Atomic Force Microscopy at the Water-Muscovite Interface: Hydration Layer Structure and Force Analysis. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2016; 32:3608-3616. [PMID: 27018633 DOI: 10.1021/acs.langmuir.5b04277] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
With the development of atomic force microscopy (AFM), it is now possible to detect the buried liquid-solid interfacial structure in three dimensions at the atomic scale. One of the model surfaces used for AFM is the muscovite surface because it is atomically flat after cleavage along the basal plane. Although it is considered that force profiles obtained by AFM reflect the interfacial structures (e.g., muscovite surface and water structure), the force profiles are not straightforward because of the lack of a quantitative relationship between the force and the interfacial structure. In the present study, molecular dynamics simulations were performed to investigate the relationship between the muscovite-water interfacial structure and the measured AFM force using a capped carbon nanotube (CNT) AFM tip. We provide divided force profiles, where the force contributions from each water layer at the interface are shown. They reveal that the first hydration layer is dominant in the total force from water even after destruction of the layer. Moreover, the lateral structure of the first hydration layer transcribes the muscovite surface structure. It resembles the experimentally resolved surface structure of muscovite in previous AFM studies. The local density profile of water between the tip and the surface provides further insight into the relationship between the water structure and the detected force structure. The detected force structure reflects the basic features of the atomic structure for the local hydration layers. However, details including the peak-peak distance in the force profile (force-distance curve) differ from those in the density profile (density-distance curve) because of disturbance by the tip.
Collapse
Affiliation(s)
- Kazuya Kobayashi
- Department of Energy and Hydrocarbon Chemistry, Kyoto University , Kyoto 615-8510, Japan
- Environment and Resource System Engineering, Kyoto University , Kyoto 615-8540, Japan
| | - Yunfeng Liang
- Environment and Resource System Engineering, Kyoto University , Kyoto 615-8540, Japan
| | - Ken-ichi Amano
- Department of Energy and Hydrocarbon Chemistry, Kyoto University , Kyoto 615-8510, Japan
| | - Sumihiko Murata
- Environment and Resource System Engineering, Kyoto University , Kyoto 615-8540, Japan
| | - Toshifumi Matsuoka
- Environment and Resource System Engineering, Kyoto University , Kyoto 615-8540, Japan
| | - Satoru Takahashi
- Japan Oil, Gas and Metals National Corporation (JOGMEC), Chiba 261-0025, Japan
| | - Naoya Nishi
- Department of Energy and Hydrocarbon Chemistry, Kyoto University , Kyoto 615-8510, Japan
| | - Tetsuo Sakka
- Department of Energy and Hydrocarbon Chemistry, Kyoto University , Kyoto 615-8510, Japan
| |
Collapse
|
35
|
Miyazawa K, Kobayashi N, Watkins M, Shluger AL, Amano KI, Fukuma T. A relationship between three-dimensional surface hydration structures and force distribution measured by atomic force microscopy. NANOSCALE 2016; 8:7334-42. [PMID: 26980273 DOI: 10.1039/c5nr08092d] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
Hydration plays important roles in various solid-liquid interfacial phenomena. Very recently, three-dimensional scanning force microscopy (3D-SFM) has been proposed as a tool to visualise solvated surfaces and their hydration structures with lateral and vertical (sub) molecular resolution. However, the relationship between the 3D force map obtained and the equilibrium water density, ρ(r), distribution above the surface remains an open question. Here, we investigate this relationship at an interface of an inorganic mineral, fluorite, and water. The force maps measured in pure water are directly compared to force maps generated using the solvent tip approximation (STA) model and from explicit molecular dynamics simulations. The results show that the simulated STA force map describes the major features of the experimentally obtained force image. The agreement between the STA data and the experiment establishes the correspondence between the water density used as an input to the STA model and the experimental hydration structure and thus provides a tool to bridge the experimental force data and atomistic solvation structures. Further applications of this method should improve the accuracy and reliability of both interpretation of 3D-SFM force maps and atomistic simulations in a wide range of solid-liquid interfacial phenomena.
Collapse
Affiliation(s)
- Keisuke Miyazawa
- Division of Electrical Engineering and Computer Science, Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan.
| | - Naritaka Kobayashi
- Division of Electrical Engineering and Computer Science, Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan.
| | - Matthew Watkins
- School of Mathematics and Physics, University of Lincoln, Brayford Pool, Lincoln LN6 7TS, UK
| | - Alexander L Shluger
- Department of Physics and Astronomy and London Centre for Nanotechnology, University College London, Gower Street, London, WC1E 6BT, UK
| | - Ken-ichi Amano
- Department of Energy and Hydrocarbon Chemistry, Graduate School of Engineering, Kyoto University, Kyoto 615-8510, Japan
| | - Takeshi Fukuma
- Division of Electrical Engineering and Computer Science, Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan. and ACT-C, Japan Science and Technology Agency, Honcho 4-1-9, Kawaguchi 332-0012, Japan
| |
Collapse
|
36
|
Yokota Y, Hara H, Morino Y, Bando KI, Imanishi A, Uemura T, Takeya J, Fukui KI. Molecularly clean ionic liquid/rubrene single-crystal interfaces revealed by frequency modulation atomic force microscopy. Phys Chem Chem Phys 2015; 17:6794-800. [DOI: 10.1039/c4cp06041e] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Frequency modulation atomic force microscopy was employed to show a molecularly clean interface between an ionic liquid and a rubrene single crystal for possible applications to electric double-layer field-effect transistors.
Collapse
Affiliation(s)
- Yasuyuki Yokota
- Department of Materials Engineering Science
- Graduate School of Engineering Science
- Osaka University
- Toyonaka
- Japan
| | - Hisaya Hara
- Department of Materials Engineering Science
- Graduate School of Engineering Science
- Osaka University
- Toyonaka
- Japan
| | - Yusuke Morino
- Department of Materials Engineering Science
- Graduate School of Engineering Science
- Osaka University
- Toyonaka
- Japan
| | - Ken-ichi Bando
- Department of Materials Engineering Science
- Graduate School of Engineering Science
- Osaka University
- Toyonaka
- Japan
| | - Akihito Imanishi
- Department of Materials Engineering Science
- Graduate School of Engineering Science
- Osaka University
- Toyonaka
- Japan
| | - Takafumi Uemura
- Department of Advanced Materials Science
- Graduate School of Frontier Science
- The University of Tokyo
- Chiba 277-8561
- Japan
| | - Jun Takeya
- Department of Advanced Materials Science
- Graduate School of Frontier Science
- The University of Tokyo
- Chiba 277-8561
- Japan
| | - Ken-ichi Fukui
- Department of Materials Engineering Science
- Graduate School of Engineering Science
- Osaka University
- Toyonaka
- Japan
| |
Collapse
|