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Maiti T, Ghosh P. Unravelling diverse spatiotemporal orders in chlorine dioxide-iodine-malonic acid reaction-diffusion system through circularly polarized electric field and photo-illumination. J Chem Phys 2023; 159:174902. [PMID: 37909457 DOI: 10.1063/5.0171763] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Accepted: 10/16/2023] [Indexed: 11/03/2023] Open
Abstract
Designing and predicting self-organized pattern formation in out-of-equilibrium chemical and biochemical reactions holds fundamental significance. External perturbations like light and electric fields exert a crucial influence on reaction-diffusion systems involving ionic species. While the separate impacts of light and electric fields have been extensively studied, comprehending their combined effects on spatiotemporal dynamics is paramount for designing versatile spatial orders. Here, we theoretically investigate the spatiotemporal dynamics of chlorine dioxide-iodine-malonic acid reaction-diffusion system under photo-illumination and circularly polarized electric field (CPEF). By applying CPEF at varying intensities and frequencies, we observe the predominant emergence of oscillating hexagonal spot-like patterns from homogeneous stable steady states. Furthermore, our study unveils a spectrum of intriguing spatiotemporal instabilities, encompassing stripe-like patterns, oscillating dumbbell-shaped patterns, spot-like instabilities with square-based symmetry, and irregular chaotic patterns. However, when we introduce periodic photo-illumination to the hexagonal spot-like instabilities induced by CPEF in homogeneous steady states, we observe periodic size fluctuations. Additionally, the stripe-like instabilities undergo alternating transitions between hexagonal spots and stripes. Notably, within the Turing region, the interplay between these two external influences leads to the emergence of distinct superlattice patterns characterized by hexagonal-and square-based symmetry. These patterns include parallel lines of spots, target-like formations, black-eye patterns, and other captivating structures. Remarkably, the simple perturbation of the system through the application of these two external fields offers a versatile tool for generating a wide range of pattern-forming instabilities, thereby opening up exciting possibilities for future experimental validation.
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Affiliation(s)
- Tarpan Maiti
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram, Kerala 695551, India
| | - Pushpita Ghosh
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram, Kerala 695551, India
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2
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Giri A, Kar S. Unraveling the diverse nature of electric field induced spatial pattern formation in Gray-Scott model. J Chem Phys 2019; 150:094904. [PMID: 30849881 DOI: 10.1063/1.5080553] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
We have considered a Gray-Scott kind of model chemical reaction-diffusion system that comprises ionic reactants and auto-catalysts to investigate the possibilities of mobility induced spatial pattern formation under the influence of an external electric field. Our study reveals that applying a uni-directional electric field can deform the already existing Turing patterns obtained due to diffusion driven instability, but cannot produce mobility driven instability and consequent spatial patterns in the absence of diffusion driven instability for a Gray-Scott like system. However, application of the electric field along two mutually perpendicular directions produces a mobility induced pattern in the absence of any differences in the diffusivities of the corresponding chemical reactants. Additionally, we have shown a systematic way to predict the range of absolute values of the pair of electric field intensities along two directions that will lead to spatially heterogeneous patterns in the absence of diffusion driven instability. Our study further demonstrates that the stability of the patterns formed and the nature of the patterns evolved varies with the increasing level of electric field intensities. The insights gained from this study will allow us to develop future experimental strategies to produce diverse range of stable and unique spatial patterns.
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Affiliation(s)
- Amitava Giri
- Department of Chemistry, IIT Bombay, Powai, Mumbai 400076, India
| | - Sandip Kar
- Department of Chemistry, IIT Bombay, Powai, Mumbai 400076, India
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Dierckx H, Panfilov AV, Verschelde H, Biktashev VN, Biktasheva IV. Response function framework for the dynamics of meandering or large-core spiral waves and modulated traveling waves. Phys Rev E 2019; 99:022217. [PMID: 30934367 DOI: 10.1103/physreve.99.022217] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2018] [Indexed: 06/09/2023]
Abstract
In many oscillatory or excitable systems, dynamical patterns emerge which are stationary or periodic in a moving frame of reference. Examples include traveling waves or spiral waves in chemical systems or cardiac tissue. We present a unified theoretical framework for the drift of such patterns under small external perturbations, in terms of overlap integrals between the perturbation and the adjoint critical eigenfunctions of the linearized operator (i.e., response functions). For spiral waves, the finite radius of the spiral tip trajectory and spiral wave meander are taken into account. Different coordinate systems can be chosen, depending on whether one wants to predict the motion of the spiral-wave tip, the time-averaged tip path, or the center of the meander flower. The framework is applied to analyze the drift of a meandering spiral wave in a constant external field in different regimes.
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Affiliation(s)
- Hans Dierckx
- Department of Physics and Astronomy, Ghent University, 9000 Ghent, Belgium
| | - A V Panfilov
- Department of Physics and Astronomy, Ghent University, 9000 Ghent, Belgium
- Laboratory of Computational Biology and Medicine, Ural Federal University, Ekaterinburg 620075, Russia
| | - H Verschelde
- Department of Physics and Astronomy, Ghent University, 9000 Ghent, Belgium
| | - V N Biktashev
- College of Engineering, Mathematics and Physical Sciences, University of Exeter, Exeter EX4 4QF, United Kingdom
| | - I V Biktasheva
- College of Engineering, Mathematics and Physical Sciences, University of Exeter, Exeter EX4 4QF, United Kingdom
- Department of Computer Science, University of Liverpool, Liverpool L69 3BX, United Kingdom
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Rostami Z, Jafari S. Defects formation and spiral waves in a network of neurons in presence of electromagnetic induction. Cogn Neurodyn 2018; 12:235-254. [PMID: 29564031 DOI: 10.1007/s11571-017-9472-y] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2017] [Revised: 12/04/2017] [Accepted: 12/29/2017] [Indexed: 11/30/2022] Open
Abstract
Complex anatomical and physiological structure of an excitable tissue (e.g., cardiac tissue) in the body can represent different electrical activities through normal or abnormal behavior. Abnormalities of the excitable tissue coming from different biological reasons can lead to formation of some defects. Such defects can cause some successive waves that may end up to some additional reorganizing beating behaviors like spiral waves or target waves. In this study, formation of defects and the resulting emitted waves in an excitable tissue are investigated. We have considered a square array network of neurons with nearest-neighbor connections to describe the excitable tissue. Fundamentally, electrophysiological properties of ion currents in the body are responsible for exhibition of electrical spatiotemporal patterns. More precisely, fluctuation of accumulated ions inside and outside of cell causes variable electrical and magnetic field. Considering undeniable mutual effects of electrical field and magnetic field, we have proposed the new Hindmarsh-Rose (HR) neuronal model for the local dynamics of each individual neuron in the network. In this new neuronal model, the influence of magnetic flow on membrane potential is defined. This improved model holds more bifurcation parameters. Moreover, the dynamical behavior of the tissue is investigated in different states of quiescent, spiking, bursting and even chaotic state. The resulting spatiotemporal patterns are represented and the time series of some sampled neurons are displayed, as well.
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Affiliation(s)
- Zahra Rostami
- Biomedical Engineering Department, Amirkabir University of Technology, Tehran, 15875-4413 Iran
| | - Sajad Jafari
- Biomedical Engineering Department, Amirkabir University of Technology, Tehran, 15875-4413 Iran
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Dierckx H, Biktasheva IV, Verschelde H, Panfilov AV, Biktashev VN. Filament Tension and Phase Locking of Meandering Scroll Waves. PHYSICAL REVIEW LETTERS 2017; 119:258101. [PMID: 29303350 DOI: 10.1103/physrevlett.119.258101] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2017] [Indexed: 06/07/2023]
Abstract
Meandering spiral waves are often observed in excitable media such as the Belousov-Zhabotinsky reaction and cardiac tissue. We derive a theory for drift dynamics of meandering rotors in general reaction-diffusion systems and apply it to two types of external disturbances: an external field and curvature-induced drift in three dimensions. We find two distinct regimes: with small filament curvature, meandering scroll waves exhibit filament tension, whose sign determines the stability and drift direction. In the regimes of strong external fields or meandering motion close to resonance, however, phase locking of the meander pattern is predicted and observed.
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Affiliation(s)
- Hans Dierckx
- Department of Physics and Astronomy, Ghent University, 9000 Ghent, Belgium
| | - I V Biktasheva
- Department of Computer Science, University of Liverpool, Liverpool L69 3BX, United Kingdom
- College of Engineering, Mathematics and Physical Sciences, University of Exeter, Exeter EX4 4QF, United Kingdom
| | - H Verschelde
- Department of Physics and Astronomy, Ghent University, 9000 Ghent, Belgium
| | - A V Panfilov
- Department of Physics and Astronomy, Ghent University, 9000 Ghent, Belgium
| | - V N Biktashev
- College of Engineering, Mathematics and Physical Sciences, University of Exeter, Exeter EX4 4QF, United Kingdom
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Deng H, Qiang Y, Zhang T, Li W, Yang T. Chiral selection of single helix formed by diblock copolymers confined in nanopores. NANOSCALE 2016; 8:15961-15969. [PMID: 27536966 DOI: 10.1039/c6nr05043c] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Chiral selection has attracted tremendous attention from the scientific communities, especially from biologists, due to the mysterious origin of homochirality in life. The self-assembly of achiral block copolymers confined in nanopores offers a simple but useful model of forming helical structures, where the helical structures possess random chirality selection, i.e. equal probability of left-handedness and right-handedness. Based on this model, we study the stimulus-response of chiral selection to external conditions by introducing a designed chiral pattern onto the inner surface of a nanopore, aiming to obtain a defect-free helix with controllable homochirality. A cell dynamics simulation based on the time-dependent Ginzburg-Landau theory is carried out to demonstrate the tuning effect of the patterned surface on the chiral selection. Our results illustrate that the chirality of the helix can be successfully controlled to be consistent with that of the tailored surface patterns. This work provides a successful example for the stimulus response of the chiral selection of self-assembled morphologies from achiral macromolecules to external conditions, and hence sheds light on the understanding of the mechanism of the stimulus response.
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Affiliation(s)
- Hanlin Deng
- State Key Laboratory of Molecular Engineering of Polymers, Department of Macromolecular Science, Fudan University, Shanghai 200433, China.
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Removal of pinned scroll waves in cardiac tissues by electric fields in a generic model of three-dimensional excitable media. Sci Rep 2016; 6:21876. [PMID: 26905367 PMCID: PMC4764807 DOI: 10.1038/srep21876] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2015] [Accepted: 02/02/2016] [Indexed: 11/09/2022] Open
Abstract
Spirals or scroll waves pinned to heterogeneities in cardiac tissues may cause lethal arrhythmias. To unpin these life-threatening spiral waves, methods of wave emission from heterogeneities (WEH) induced by low-voltage pulsed DC electric fields (PDCEFs) and circularly polarized electric fields (CPEFs) have been used in two-dimensional (2D) cardiac tissues. Nevertheless, the unpinning of scroll waves in three-dimensional (3D) cardiac systems is much more difficult than that of spiral waves in 2D cardiac systems, and there are few reports on the removal of pinned scroll waves in 3D cardiac tissues by electric fields. In this article, we investigate in detail the removal of pinned scroll waves in a generic model of 3D excitable media using PDCEF, AC electric field (ACEF) and CPEF, respectively. We find that spherical waves can be induced from the heterogeneities by these electric fields in initially quiescent excitable media. However, only CPEF can induce spherical waves with frequencies higher than that of the pinned scroll wave. Such higher-frequency spherical waves induced by CPEF can be used to drive the pinned scroll wave out of the cardiac systems. We hope this remarkable ability of CPEF can provide a better alternative to terminate arrhythmias caused by pinned scroll waves.
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Li TC, Gao X, Zheng FF, Cai MC, Li BW, Zhang H, Dierckx H. Phase-locked scroll waves defy turbulence induced by negative filament tension. Phys Rev E 2016; 93:012216. [PMID: 26871082 DOI: 10.1103/physreve.93.012216] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2015] [Indexed: 11/07/2022]
Abstract
Scroll waves in a three-dimensional media may develop into turbulence due to negative tension of the filament. Such negative tension-induced instability of scroll waves has been observed in the Belousov-Zhabotinsky reaction systems. Here we propose a method to restabilize scroll wave turbulence caused by negative tension in three-dimensional chemical excitable media using a circularly polarized (rotating) external field. The stabilization mechanism is analyzed in terms of phase-locking caused by the external field, which makes the effective filament tension positive. The phase-locked scroll waves that have positive tension and higher frequency defy the turbulence and finally restore order. A linear theory for the change of filament tension caused by a generic rotating external field is presented and its predictions closely agree with numerical simulations.
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Affiliation(s)
- Teng-Chao Li
- Zhejiang Institute of Modern Physics and Department of Physics, Zhejiang University, Hangzhou 310027, China
| | - Xiang Gao
- School of Physics and Information Technology, Shaanxi Normal University, Xi'an 710062, China
| | - Fei-Fei Zheng
- Zhejiang Institute of Modern Physics and Department of Physics, Zhejiang University, Hangzhou 310027, China
| | - Mei-Chun Cai
- Department of Physics and Institute of Theoretical Physics and Astrophysics, Xiamen University, Xiamen 361005, China
| | - Bing-Wei Li
- Department of Physics, Hangzhou Normal University, Hangzhou 310036, China
| | - Hong Zhang
- Zhejiang Institute of Modern Physics and Department of Physics, Zhejiang University, Hangzhou 310027, China
| | - Hans Dierckx
- Department of Physics and Astronomy, Ghent University, Krijgslaan 281, 9000 Gent, Belgium
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Burton RAB, Klimas A, Ambrosi CM, Tomek J, Corbett A, Entcheva E, Bub G. Optical control of excitation waves in cardiac tissue. NATURE PHOTONICS 2015; 9:813-816. [PMID: 27057206 PMCID: PMC4821438 DOI: 10.1038/nphoton.2015.196] [Citation(s) in RCA: 85] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
In nature, macroscopic excitation waves1,2 are found in a diverse range of settings including chemical reactions, metal rust, yeast, amoeba and the heart and brain. In the case of living biological tissue, the spatiotemporal patterns formed by these excitation waves are different in healthy and diseased states2,3. Current electrical and pharmacological methods for wave modulation lack the spatiotemporal precision needed to control these patterns. Optical methods have the potential to overcome these limitations, but to date have only been demonstrated in simple systems, such as the Belousov-Zhabotinsky chemical reaction4. Here, we combine dye-free optical imaging with optogenetic actuation to achieve dynamic control of cardiac excitation waves. Illumination with patterned light is demonstrated to optically control the direction, speed and spiral chirality of such waves in cardiac tissue. This all-optical approach offers a new experimental platform for the study and control of pattern formation in complex biological excitable systems.
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Affiliation(s)
- Rebecca A. B. Burton
- Department of Physiology, Anatomy and Genetics, University of Oxford, Sherrington Building, Parks Road, Oxford OX1 3PT, UK
| | - Aleksandra Klimas
- Department of Biomedical Engineering, Stony Brook University, Stony Brook, New York 11794, USA
| | - Christina M. Ambrosi
- Department of Biomedical Engineering, Stony Brook University, Stony Brook, New York 11794, USA
| | - Jakub Tomek
- Department of Physiology, Anatomy and Genetics, University of Oxford, Sherrington Building, Parks Road, Oxford OX1 3PT, UK
| | - Alex Corbett
- Department of Physiology, Anatomy and Genetics, University of Oxford, Sherrington Building, Parks Road, Oxford OX1 3PT, UK
- Department of Engineering Science, University of Oxford, Parks Road, Oxford OX1 3PJ, UK
| | - Emilia Entcheva
- Department of Biomedical Engineering, Stony Brook University, Stony Brook, New York 11794, USA
| | - Gil Bub
- Department of Physiology, Anatomy and Genetics, University of Oxford, Sherrington Building, Parks Road, Oxford OX1 3PT, UK
- Correspondence and requests for materials should be addressed to G.B.
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Feng X, Gao X, Tang JM, Pan JT, Zhang H. Wave trains induced by circularly polarized electric fields in cardiac tissues. Sci Rep 2015; 5:13349. [PMID: 26302781 PMCID: PMC4548189 DOI: 10.1038/srep13349] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2015] [Accepted: 07/22/2015] [Indexed: 11/28/2022] Open
Abstract
Clinically, cardiac fibrillation caused by spiral and turbulent waves can be terminated by globally resetting electric activity in cardiac tissues with a single high-voltage electric shock, but it is usually associated with severe side effects. Presently, a promising alternative uses wave emission from heterogeneities induced by a sequence of low-voltage uniform electric field pulses. Nevertheless, this method can only emit waves locally near obstacles in turbulent waves and thereby requires multiple obstacles to globally synchronize myocardium and thus to terminate fibrillation. Here we propose a new approach using wave emission from heterogeneities induced by a low-voltage circularly polarized electric field (i.e., a rotating uniform electric field). We find that, this approach can generate circular wave trains near obstacles and they propagate outwardly. We study the characteristics of such circular wave trains and further find that, the higher-frequency circular wave trains can effectively suppress spiral turbulence.
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Affiliation(s)
- Xia Feng
- Zhejiang Institute of Modern Physics and Department of Physics, Zhejiang University, Hangzhou 310027, China
| | - Xiang Gao
- Zhejiang Institute of Modern Physics and Department of Physics, Zhejiang University, Hangzhou 310027, China.,School of Physics and Information Technology, Shaanxi Normal University, Xi'an 710062, China
| | - Juan-Mei Tang
- Zhejiang Institute of Modern Physics and Department of Physics, Zhejiang University, Hangzhou 310027, China
| | - Jun-Ting Pan
- Institute of Physical Oceanography and Ocean College, Zhejiang University, Hangzhou 310058, China
| | - Hong Zhang
- Zhejiang Institute of Modern Physics and Department of Physics, Zhejiang University, Hangzhou 310027, China
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