1
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Huang G, Huang J. Revisiting the Thickness of the Air-Water Interface from Two Extremes of Interface Hydrogen Bond Dynamics. J Chem Theory Comput 2024; 20:9107-9115. [PMID: 39365976 PMCID: PMC11500428 DOI: 10.1021/acs.jctc.4c00457] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2024] [Revised: 09/15/2024] [Accepted: 09/24/2024] [Indexed: 10/06/2024]
Abstract
The air-water interface plays a crucial role in many aspects of science because of its unique properties, such as a two-dimensional hydrogen bond (HB) network and completely different HB dynamics compared to bulk water. However, accurately determining the boundary of interfacial and bulk water, that is, the thickness of the air-water interface, still challenges experimentalists. Various simulation-based methods have been developed to estimate the thickness, converging on a range of approximately 3-10 (Å). In this study, we introduce a novel approach, grounded in density functional theory-based molecular dynamics and deep potential molecular dynamics simulations, to measure the air-water interface thickness, offering a different perspective based on prior research. To capture realistic HB dynamics in the air-water interface, two extreme scenarios of the interface HB dynamics are obtained: one underestimates the interface HB dynamics, while the other overestimates it. Surprisingly, our results suggest that the interface HB dynamics in both scenarios converges as the thickness of the air-water interface increases to 4 (Å). This convergence point, indicative of the realistic interface thickness, is also validated by our calculation of anisotropic decay of OH stretch and the free OH dynamics at the air-water interface.
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Affiliation(s)
- Gang Huang
- Institute
of Theoretical Physics, Chinese Academy
of Sciences, Zhongguancun East Road 55, 100190 Beijing, China
| | - Jie Huang
- Department
of Applied Physics, Aalto University, Helsinki FI-00076, Finland
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2
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Chen W, Louaas D, Brigiano FS, Pezzotti S, Gaigeot MP. A simplified method for theoretical sum frequency generation spectroscopy calculation and interpretation: The "pop model". J Chem Phys 2024; 161:144115. [PMID: 39392142 DOI: 10.1063/5.0231540] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2024] [Accepted: 09/21/2024] [Indexed: 10/12/2024] Open
Abstract
Existing methods to compute theoretical spectra are restricted to the use of time-correlation functions evaluated from accurate atomistic molecular dynamics simulations, often at the ab initio level. The molecular interpretation of the computed spectra requires additional steps to deconvolve the spectroscopic contributions from local water and surface structural populations at the interface. The lack of a standard procedure to do this often hampers rationalization. To overcome these challenges, we rewrite the equations for spectra calculation into a sum of partial contributions from interfacial populations, weighted by their abundance at the interface. We show that SFG signatures from each population can be parameterized into a minimum dataset of reference partial spectra. Accurate spectra can then be predicted by just evaluating the statistics of interfacial populations, which can be done even with force field simulations as well as with analytic models. This approach broadens the range of simulation techniques from which theoretical spectra can be calculated, opening toward non-atomistic and Monte Carlo simulation approaches. Most notably, it allows constructing accurate theoretical spectra for interfacial conditions that cannot even be simulated, as we demonstrate for the pH-dependent SFG spectra of silica/water interfaces.
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Affiliation(s)
- Wanlin Chen
- Université Paris-Saclay, University Evry, CY Cergy Paris Université, CNRS, LAMBE UMR8587, 91025 Evry-Courcouronnes, France
- Department of Physical Chemistry II, Ruhr University Bochum, D-44801 Bochum, Germany
| | - Dorian Louaas
- Université Paris-Saclay, University Evry, CY Cergy Paris Université, CNRS, LAMBE UMR8587, 91025 Evry-Courcouronnes, France
| | - Flavio Siro Brigiano
- Laboratoire de Chimie Théorique, Sorbonne Université, UMR 7616 CNRS, 4 Place Jussieu, 75005 Paris, France
| | - Simone Pezzotti
- PASTEUR, Département de Chimie, Ecole Normale Supérieure, PSL University, Sorbonne University, CNRS, 75005 Paris, France
| | - Marie-Pierre Gaigeot
- Université Paris-Saclay, University Evry, CY Cergy Paris Université, CNRS, LAMBE UMR8587, 91025 Evry-Courcouronnes, France
- Institut Universitaire de France (IUF), 75005 Paris, France
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3
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Du X, Shao W, Bao C, Zhang L, Cheng J, Tang F. Revealing the molecular structures of α-Al2O3(0001)-water interface by machine learning based computational vibrational spectroscopy. J Chem Phys 2024; 161:124702. [PMID: 39315880 DOI: 10.1063/5.0230101] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2024] [Accepted: 09/05/2024] [Indexed: 09/25/2024] Open
Abstract
Solid-water interfaces are crucial to many physical and chemical processes and are extensively studied using surface-specific sum-frequency generation (SFG) spectroscopy. To establish clear correlations between specific spectral signatures and distinct interfacial water structures, theoretical calculations using molecular dynamics (MD) simulations are required. These MD simulations typically need relatively long trajectories (a few nanoseconds) to achieve reliable SFG response function calculations via the dipole moment-polarizability time correlation function. However, the requirement for long trajectories limits the use of computationally expensive techniques, such as ab initio MD (AIMD) simulations, particularly for complex solid-water interfaces. In this work, we present a pathway for calculating vibrational spectra (IR, Raman, and SFG) of solid-water interfaces using machine learning (ML)-accelerated methods. We employ both the dipole moment-polarizability correlation function and the surface-specific velocity-velocity correlation function approaches to calculate SFG spectra. Our results demonstrate the successful acceleration of AIMD simulations and the calculation of SFG spectra using ML methods. This advancement provides an opportunity to calculate SFG spectra for complicated solid-water systems more rapidly and at a lower computational cost with the aid of ML.
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Affiliation(s)
- Xianglong Du
- State Key Laboratory of Physical Chemistry of Solid Surfaces, iChEM, College of Chemistry and Chemical Engineering, Discipline of Intelligent Instrument and Equipment, Xiamen University, Xiamen 361005, China
| | - Weizhi Shao
- Yau Mathematical Sciences Center, Tsinghua University, Beijing 100084, China
- AI for Science Institute, Beijing 100080, China
| | - Chenglong Bao
- Yau Mathematical Sciences Center, Tsinghua University, Beijing 100084, China
| | - Linfeng Zhang
- AI for Science Institute, Beijing 100080, China
- DP Technology, Beijing 100080, China
| | - Jun Cheng
- State Key Laboratory of Physical Chemistry of Solid Surfaces, iChEM, College of Chemistry and Chemical Engineering, Discipline of Intelligent Instrument and Equipment, Xiamen University, Xiamen 361005, China
- Laboratory of AI for Electrochemistry (AI4EC), Tan Kah Kee Innovation Laboratory (IKKEM), Xiamen 361005, China
- Institute of Artificial Intelligence, Xiamen University, Xiamen 361005, China
| | - Fujie Tang
- Laboratory of AI for Electrochemistry (AI4EC), Tan Kah Kee Innovation Laboratory (IKKEM), Xiamen 361005, China
- Institute of Artificial Intelligence, Xiamen University, Xiamen 361005, China
- Pen-Tung Sah Institute of Micro-Nano Science and Technology, Xiamen University, Xiamen 361005, China
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4
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Schneck E, Reed J, Seki T, Nagata Y, Kanduč M. Experimental and simulation-based characterization of surfactant adsorption layers at fluid interfaces. Adv Colloid Interface Sci 2024; 331:103237. [PMID: 38959812 DOI: 10.1016/j.cis.2024.103237] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2023] [Revised: 06/10/2024] [Accepted: 06/13/2024] [Indexed: 07/05/2024]
Abstract
Adsorption of surfactants to fluid interfaces occurs in numerous technological and daily-life contexts. The coverage at the interface and other properties of the formed adsorption layers determine the performance of a surfactant with regard to the desired application. Given the importance of these applications, there is a great demand for the comprehensive characterization and understanding of surfactant adsorption layers. In this review, we provide an overview of suitable experimental and simulation-based techniques and review the literature in which they were used for the investigation of surfactant adsorption layers. We come to the conclusion that, while these techniques have been successfully applied to investigate Langmuir monolayers of water-insoluble surfactants, their application to the study of Gibbs adsorption layers of water-soluble surfactants has not been fully exploited. Finally, we emphasize the great potential of these methods in providing a deeper understanding of the behavior of soluble surfactants at interfaces, which is crucial for optimizing their performance in various applications.
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Affiliation(s)
- Emanuel Schneck
- Department of Physics, Technische Universität Darmstadt, Hochschulstrasse 8, 64289 Darmstadt, Germany.
| | - Joshua Reed
- Department of Physics, Technische Universität Darmstadt, Hochschulstrasse 8, 64289 Darmstadt, Germany
| | - Takakazu Seki
- Graduate School of Science and Technology, Hirosaki University, Hirosaki, 036-8561 Aomori, Japan
| | - Yuki Nagata
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany.
| | - Matej Kanduč
- Department of Theoretical Physics, Jožef Stefan Institute, Jamova 39, SI-1000 Ljubljana, Slovenia.
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5
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Borkowski AK, Senanayake HS, Thompson WH. A generalized van't Hoff relation for the temperature dependence of complex-valued nonlinear spectra. J Chem Phys 2024; 161:064114. [PMID: 39140445 DOI: 10.1063/5.0220236] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2024] [Accepted: 07/23/2024] [Indexed: 08/15/2024] Open
Abstract
The temperature dependence of spectra can reveal important insights into the structural and dynamical behavior of the system being probed. In the case of linear spectra, this has been exploited to investigate the thermodynamic driving forces governing the spectral response. Indeed, the temperature derivative of a spectrum can be used to obtain effective energetic and entropic profiles as a function of the measured frequency. The former can further be used to predict the temperature-dependent spectrum via a van't Hoff relation. However, these approaches are not directly applicable to nonlinear, complex-valued spectra, such as vibrational sum-frequency generation (SFG) or two-dimensional infrared (2D-IR) photon echo spectra. Here, we show how the energetic and entropic driving forces governing such nonlinear spectra can be determined and used within a generalized van't Hoff relation to predict their temperature dependence. The central idea is to allow the underlying energetic profiles to themselves be complex-valued. We illustrate this approach for 2D-IR spectra of water and SFG spectra of the air-water interface and demonstrate the accuracy of the generalized van't Hoff relationship and its implications for the origin of temperature-dependent spectral changes.
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Affiliation(s)
- Ashley K Borkowski
- Department of Chemistry, University of Kansas, Lawrence, Kansas 66045, USA
| | | | - Ward H Thompson
- Department of Chemistry, University of Kansas, Lawrence, Kansas 66045, USA
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6
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Shen H, Chen L, Zou X, Wu Q. Modeling Vibrational Sum Frequency Generation Spectra of Interfacial Water on a Gold Surface: The Role of the Fermi Resonance. J Phys Chem B 2024; 128:6638-6647. [PMID: 38922305 DOI: 10.1021/acs.jpcb.4c02043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/27/2024]
Abstract
Studying the hydrogen bonding structure of H2O at the metal-water interface is a highly complex yet fascinating endeavor. The intricate interactions and diverse orientations of water molecules on metal surfaces with varying potentials pose a significant challenge in elucidating the coupling between O-H stretching and H-O-H bending modes. In this study, we employed DFT-MD simulation to explore how the orientation of interfacial water molecules changes with the applied potential on the Au(111) surface. Based on the surface-specific velocity-velocity correlation function (ssVVCF) formula, we calculated vibrational sum frequency generation (VSFG) spectra for the O-H stretches. We found that three assigned peaks (∼3300, ∼3450, and 3650 cm-1) shifted toward lower frequencies as the potential moved toward more negative values. Our results align remarkably well with experimental Raman spectroscopy data. Notably, our VSFG analysis revealed a significant change in the VSFG spectra of the hydrogen-bonded O-H groups (∼3300 cm-1), switching from a negative to a positive sign with decreasing potential. This alteration suggests a substantial change in the orientation of these low-frequency O-H groups owing to their increased interactions with the Au surface. In contrast, the orientations of both the high-frequency O-H groups (∼3450 cm-1) and the dangling O-H groups (∼3650 cm-1) remained unaffected by the applied potentials. Furthermore, our analysis of the decomposed vibrational density of states (VDOS) for the H-O-H bending mode uncovered the coupling between the H-O-H bending and O-H stretching vibrations, known as the Fermi resonance. Our work suggests that the H-O-H bending vibration becomes restricted when water molecules transition from the ″one-H-down″ to the ″two-H-down″ conformation, leading to a redshift in the O-H stretching vibration through the Fermi resonance. By constructing the VSFG and decomposed VDOS spectra, we gained valuable insights into the structural changes that Raman spectra alone cannot fully interpret. Specifically, our analysis revealed the critical role of the Fermi resonance effect in shaping the spectroscopic signature of interfacial water molecules on the Au(111) surface.
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Affiliation(s)
- Hujun Shen
- Guizhou Provincial Key Laboratory of Computational Nano-Material Science, Guizhou Education University, Guiyang 550018, P. R. China
| | - Ling Chen
- Guizhou Provincial Key Laboratory of Computational Nano-Material Science, Guizhou Education University, Guiyang 550018, P. R. China
| | - Xuefeng Zou
- Guizhou Provincial Key Laboratory of Computational Nano-Material Science, Guizhou Education University, Guiyang 550018, P. R. China
| | - Qingqing Wu
- Guizhou Provincial Key Laboratory of Computational Nano-Material Science, Guizhou Education University, Guiyang 550018, P. R. China
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7
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de la Puente M, Laage D. Impact of interfacial curvature on molecular properties of aqueous interfaces. J Chem Phys 2024; 160:234504. [PMID: 38888129 DOI: 10.1063/5.0210884] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2024] [Accepted: 05/28/2024] [Indexed: 06/20/2024] Open
Abstract
The curvature of soft interfaces plays a crucial role in determining their mechanical and thermodynamic properties, both at macroscopic and microscopic scales. In the case of air/water interfaces, particular attention has recently focused on water microdroplets, due to their distinctive chemical reactivity. However, the specific impact of curvature on the molecular properties of interfacial water and interfacial reactivity has so far remained elusive. Here, we use molecular dynamics simulations to determine the effect of curvature on a broad range of structural, dynamical, and thermodynamical properties of the interface. For a droplet, a flat interface, and a cavity, we successively examine the structure of the hydrogen-bond network and its relation to vibrational spectroscopy, the dynamics of water translation, rotation, and hydrogen-bond exchanges, and the thermodynamics of ion solvation and ion-pair dissociation. Our simulations show that curvature predominantly impacts the hydrogen-bond structure through the fraction of dangling OH groups and the dynamics of interfacial water molecules. In contrast, curvature has a limited effect on solvation and ion-pair dissociation thermodynamics. For water microdroplets, this suggests that the curvature alone cannot fully account for the distinctive reactivity measured in these systems, which are of great importance for catalysis and atmospheric chemistry.
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Affiliation(s)
- M de la Puente
- PASTEUR, Department of Chemistry, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France
| | - D Laage
- PASTEUR, Department of Chemistry, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France
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8
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Jana A, Shepherd S, Litman Y, Wilkins DM. Learning Electronic Polarizations in Aqueous Systems. J Chem Inf Model 2024; 64:4426-4435. [PMID: 38804973 PMCID: PMC11167596 DOI: 10.1021/acs.jcim.4c00421] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2024] [Revised: 05/10/2024] [Accepted: 05/14/2024] [Indexed: 05/29/2024]
Abstract
The polarization of periodically repeating systems is a discontinuous function of the atomic positions, a fact which seems at first to stymie attempts at their statistical learning. Two approaches to build models for bulk polarizations are compared: one in which a simple point charge model is used to preprocess the raw polarization to give a learning target that is a smooth function of atomic positions and the total polarization is learned as a sum of atom-centered dipoles and one in which instead the average position of Wannier centers around atoms is predicted. For a range of bulk aqueous systems, both of these methods perform perform comparatively well, with the former being slightly better but often requiring an extra effort to find a suitable point charge model. As a challenging test, we also analyze the performance of the models at the air-water interface. In this case, while the Wannier center approach delivers accurate predictions without further modifications, the preprocessing method requires augmentation with information from isolated water molecules to reach similar accuracy. Finally, we present a simple protocol to preprocess the polarizations in a data-driven way using a small number of derivatives calculated at a much lower level of theory, thus overcoming the need to find point charge models without appreciably increasing the computation cost. We believe that the training strategies presented here help the construction of accurate polarization models required for the study of the dielectric properties of realistic complex bulk systems and interfaces with ab initio accuracy.
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Affiliation(s)
- Arnab Jana
- Centre
for Quantum Materials and Technologies, School of Mathematics and
Physics, Queen’s University Belfast, Belfast BT7 1NN, U.K.
| | - Sam Shepherd
- Centre
for Quantum Materials and Technologies, School of Mathematics and
Physics, Queen’s University Belfast, Belfast BT7 1NN, U.K.
| | - Yair Litman
- Yusuf
Hamied Department of Chemistry, University
of Cambridge, Lensfield Road, Cambridge CB2 1EW, U.K.
| | - David M. Wilkins
- Centre
for Quantum Materials and Technologies, School of Mathematics and
Physics, Queen’s University Belfast, Belfast BT7 1NN, U.K.
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9
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Mazarei E, Saalfrank P. Tuning Properties of Layered Materials Based on Hexagonal Boron Nitride by Methylation: A Density Functional Theory Study. Chemphyschem 2024; 25:e202300882. [PMID: 38517940 DOI: 10.1002/cphc.202300882] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2023] [Revised: 03/16/2024] [Accepted: 03/17/2024] [Indexed: 03/24/2024]
Abstract
In this work, the rational design of optoelectronic properties of two-dimensional materials based on hexagonal boron nitride (h-BN) by functionalization by methyl (CH3) groups is proposed. Using density functional theory, we examine the functionalization of single- or double-layer systems with either CH3 radicals alone or with both CH3 (cations) and chlorine (anions), i. e., under conditions of homolytic or heterolytic splitting of CH3Cl precursor molecules, respectively. Different degrees of methylation (coverages) are considered. The methylation of pure h-BN leads to a reduction of the band gap, while in h-BN/G heterostructures (with methylated graphene layer), methylation increases the band gap. As a consequence, h-BN/G heterostructures offer a high tunability of their optoelectronic properties. To guide possible experiments, vibrational properties and spectra of methylated h-BN and methylated h-BN/G are determined.
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Affiliation(s)
- Elham Mazarei
- Universität Potsdam, Institut für Chemie, Karl-Liebknecht-Str. 24-25, 14476, Potsdam-Golm, Germany
| | - Peter Saalfrank
- Universität Potsdam, Institut für Chemie, Karl-Liebknecht-Str. 24-25, 14476, Potsdam-Golm, Germany
- Universität Potsdam, Institut für Physik und Astronomie, Karl-Liebknecht-Str. 24-25, 14476, Potsdam-Golm, Germany
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10
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Ojha D, Henao A, Zysk F, Kühne TD. Nuclear quantum effects on the vibrational dynamics of the water-air interface. J Chem Phys 2024; 160:204114. [PMID: 38804494 DOI: 10.1063/5.0204071] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2024] [Accepted: 04/11/2024] [Indexed: 05/29/2024] Open
Abstract
We have applied path-integral molecular dynamics simulations to investigate the impact of nuclear quantum effects on the vibrational dynamics of water molecules at the water-air interface. The instantaneous fluctuations in the frequencies of the O-H stretch modes are calculated using the wavelet method of time series analysis, while the time scales of vibrational spectral diffusion are determined from frequency-time correlation functions and joint probability distributions. We find that the inclusion of nuclear quantum effects leads not only to a redshift in the vibrational frequency distribution by about 120 cm-1 for both the bulk and interfacial water molecules but also to an acceleration of the vibrational dynamics at the water-air interface by as much as 35%. In addition, a blueshift of about 45 cm-1 is seen in the vibrational frequency distribution of interfacial water molecules compared to that of the bulk. Furthermore, the dynamics of water molecules beyond the topmost molecular layer was found to be rather similar to that of bulk water.
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Affiliation(s)
- Deepak Ojha
- Dynamics of Condensed Matter and Center for Sustainable Systems Design, Department of Chemistry, University of Paderborn, Warburger Str. 100, D-33098 Paderborn, Germany
| | - Andrés Henao
- Dynamics of Condensed Matter and Center for Sustainable Systems Design, Department of Chemistry, University of Paderborn, Warburger Str. 100, D-33098 Paderborn, Germany
| | - Frederik Zysk
- Dynamics of Condensed Matter and Center for Sustainable Systems Design, Department of Chemistry, University of Paderborn, Warburger Str. 100, D-33098 Paderborn, Germany
| | - Thomas D Kühne
- Center for Advanced Systems Understanding (CASUS), Untermarkt 20, D-02826 Görlitz, Germany, Helmholtz Zentrum Dresden-Rossendorf, Bautzner Landstraße 400, D-01328 Dresden, Germany, and TU Dresden, Institute of Artificial Intelligence, Chair of Computational System Sciences, Nöthnitzer Straße 46, D-01187 Dresden, Germany
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11
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Wang Y, Tang F, Yu X, Ohto T, Nagata Y, Bonn M. Heterodyne-Detected Sum-Frequency Generation Vibrational Spectroscopy Reveals Aqueous Molecular Structure at the Suspended Graphene/Water Interface. Angew Chem Int Ed Engl 2024; 63:e202319503. [PMID: 38478726 DOI: 10.1002/anie.202319503] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2023] [Indexed: 04/12/2024]
Abstract
Graphene, a transparent two-dimensional conductive material, has brought extensive new perspectives and prospects to various aqueous technological systems, such as desalination membranes, chemical sensors, energy storage, and energy conversion devices. Yet, the molecular-level details of graphene in contact with aqueous electrolytes, such as water orientation and hydrogen bond structure, remain elusive or controversial. Here, we employ surface-specific heterodyne-detected sum-frequency generation (HD-SFG) vibrational spectroscopy to re-examine the water molecular structure at a freely suspended graphene/water interface. We compare the response from the air/graphene/water system to that from the air/water interface. Our results indicate that theχ y y z 2 ${{\chi }_{yyz}^{\left(2\right)}}$ spectrum recorded from the air/graphene/water system arises from the topmost 1-2 water layers in contact with the graphene, with the graphene itself not generating a significant SFG response. Compared to the air/water interface response, the presence of monolayer graphene weakly affects the interfacial water. Graphene weakly affects the dangling O-H group, lowering its frequency through its interaction with the graphene sheet, and has a very small effect on the hydrogen-bonded O-H group. Molecular dynamics simulations confirm our experimental observation. Our work provides molecular insight into the interfacial structure at a suspended graphene/water interface, relevant to various technological applications of graphene.
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Affiliation(s)
- Yongkang Wang
- Molecular Spectroscopy Department, Max Planck Institute for Polymer Research, Ackermannweg 10, 55128, Mainz, Germany
| | - Fujie Tang
- Pen-Tung Sah Institute of Micro-Nano Science and Technology, Xiamen University, 361005, Xiamen, China
- Laboratory of AI for Electrochemistry (AI4EC), IKKEM, 361005, Xiamen, China
| | - Xiaoqing Yu
- Molecular Spectroscopy Department, Max Planck Institute for Polymer Research, Ackermannweg 10, 55128, Mainz, Germany
| | - Tatsuhiko Ohto
- Graduate School of Engineering, Nagoya University, Nagoya, 464-8603, Japan
| | - Yuki Nagata
- Molecular Spectroscopy Department, Max Planck Institute for Polymer Research, Ackermannweg 10, 55128, Mainz, Germany
| | - Mischa Bonn
- Molecular Spectroscopy Department, Max Planck Institute for Polymer Research, Ackermannweg 10, 55128, Mainz, Germany
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12
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Niu K, Wang HF, Marcus RA. Sum rule comparison of narrowband and broadband sum frequency generation spectra and comparison with theory. Proc Natl Acad Sci U S A 2024; 121:e2402550121. [PMID: 38691590 PMCID: PMC11087750 DOI: 10.1073/pnas.2402550121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2024] [Accepted: 03/26/2024] [Indexed: 05/03/2024] Open
Abstract
Earlier sum frequency generation (SFG) experiments involve one infrared and one visible laser, and a measurement of the intensity of the response, yielding data on the surface sensitive properties of the sample. Recently, both the real and imaginary components of the susceptibility were measured in two different sets of experiments. In one set, a broadband infrared laser was used, permitting observations at very short times, while in another set the infrared laser was narrowband, permitting higher spectral resolution. The differences in the spectrum obtained by the two will be most evident in studying narrow absorption bands, e.g., the band due to dangling OH bonds at a water interface. The direct comparisons in the integrated amplitude (sum rule) of the imaginary part of the dangling OH bond region differ by a factor of 3. Due to variations in experimental setup and data processing, corrections were made for the quartz reference, Fresnel factors, and the incident visible laser wavelength. After the corrections, the agreement differs now by the factors of 1.1 within broadband and narrowband groups and the two groups now differ by a factor of 1.5. The 1.5 factor may arise from the extra heating of the more powerful broadband laser system on the water surface. The convolution from the narrowband SFG spectrum to the broadband SFG spectrum is also investigated and it does not affect the sum rule. Theory and narrowband experiments are compared using the sum rule and agree to a factor of 1.3 with no adjustable parameters.
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Affiliation(s)
- Kai Niu
- Department of Physics, School of Science, Tianjin University of Technology and Education, Tianjin300222, China
- Division of Chemistry and Chemical Engineering, Noyes Laboratory of Chemical Physics, California Institute of Technology, Pasadena, CA91125
| | - Hong-fei Wang
- Department of Chemistry, School of Science, Westlake University, Hangzhou310030, China
- Institute of Natural Sciences, Westlake Institute for Advanced Study, Hangzhou310024, China
| | - Rudolph A. Marcus
- Division of Chemistry and Chemical Engineering, Noyes Laboratory of Chemical Physics, California Institute of Technology, Pasadena, CA91125
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13
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Ojha D, Penschke C, Saalfrank P. Vibrational dynamics and spectroscopy of water at porous g-C 3N 4 and C 2N surfaces. Phys Chem Chem Phys 2024; 26:11084-11093. [PMID: 38530253 DOI: 10.1039/d3cp05964b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/27/2024]
Abstract
Porous graphitic materials containing nitrogen are promising catalysts for photo(electro)chemical reactions, notably water splitting, but can also serve as "molecular sieves". Nitrogen increases the hydrophilicity of the graphite parent material, among other effects. A deeper understanding of how water interacts with C- and N-containing layered materials, if and which differences exist between materials with different N content and pore size, and what the role of water dynamics is - a prerequsite for catalysis and sieving - is largely absent, however. Vibrational spectroscopy can answer some of these questions. In this work, the vibrational dynamics and spectroscopy of deuterated water molecules (D2O) mimicking dense water layers at room temperature on the surfaces of two different C/N-based materials with different N content and pore size, namely graphitic C3N4 (g-C3N4) and C2N, are studied using ab initio molecular dynamics (AIMD). In particular, time-dependent vibrational sum frequency generation (TD-vSFG) spectra of the OD modes and also time-averaged vSFG spectra and OD frequency distributions are computed. This allows us to distinguish "free" (dangling) OD bonds from OD bonds that are bound in a H-bonded water network or at the surface - with subtle differences between the two surfaces and also to a pure water/air interface. It is found that the temporal decay of OD modes is very similar on both surfaces with a correlation time near 4 ps. In contrast, TD-vSFG spectra reveal that the interconversion time from "bonded" to "free" OD bonds is about 8 ps for water on C2N and thus twice as long as for g-C3N4, demonstrating a propensity of the former material to stabilize bonded OD bonds.
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Affiliation(s)
- Deepak Ojha
- Theoretische Chemie, Institut für Chemie, Universität Potsdam, Karl-Liebknecht-Strasse 24-25, D-14476 Potsdam-Golm, Germany.
| | - Christopher Penschke
- Theoretische Chemie, Institut für Chemie, Universität Potsdam, Karl-Liebknecht-Strasse 24-25, D-14476 Potsdam-Golm, Germany.
| | - Peter Saalfrank
- Theoretische Chemie, Institut für Chemie, Universität Potsdam, Karl-Liebknecht-Strasse 24-25, D-14476 Potsdam-Golm, Germany.
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14
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Litman Y, Chiang KY, Seki T, Nagata Y, Bonn M. Surface stratification determines the interfacial water structure of simple electrolyte solutions. Nat Chem 2024; 16:644-650. [PMID: 38225269 PMCID: PMC10997511 DOI: 10.1038/s41557-023-01416-6] [Citation(s) in RCA: 14] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2022] [Accepted: 12/07/2023] [Indexed: 01/17/2024]
Abstract
The distribution of ions at the air/water interface plays a decisive role in many natural processes. Several studies have reported that larger ions tend to be surface-active, implying ions are located on top of the water surface, thereby inducing electric fields that determine the interfacial water structure. Here we challenge this view by combining surface-specific heterodyne-detected vibrational sum-frequency generation with neural network-assisted ab initio molecular dynamics simulations. Our results show that ions in typical electrolyte solutions are, in fact, located in a subsurface region, leading to a stratification of such interfaces into two distinctive water layers. The outermost surface is ion-depleted, and the subsurface layer is ion-enriched. This surface stratification is a key element in explaining the ion-induced water reorganization at the outermost air/water interface.
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Affiliation(s)
- Yair Litman
- Max Planck Institute for Polymer Research, Mainz, Germany.
- Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge, UK.
| | | | - Takakazu Seki
- Max Planck Institute for Polymer Research, Mainz, Germany
| | - Yuki Nagata
- Max Planck Institute for Polymer Research, Mainz, Germany
| | - Mischa Bonn
- Max Planck Institute for Polymer Research, Mainz, Germany.
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15
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de la Puente M, Gomez A, Laage D. Neural Network-Based Sum-Frequency Generation Spectra of Pure and Acidified Water Interfaces with Air. J Phys Chem Lett 2024; 15:3096-3102. [PMID: 38470065 DOI: 10.1021/acs.jpclett.4c00113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/13/2024]
Abstract
The affinity of hydronium ions (H3O+) for the air-water interface is a crucial question in environmental chemistry. While sum-frequency generation (SFG) spectroscopy has been instrumental in indicating the preference of H3O+ for the interface, key questions persist regarding the molecular origin of the SFG spectral changes in acidified water. Here we combine nanosecond long neural network (NN) reactive simulations of pure and acidified water slabs with NN predictions of molecular dipoles and polarizabilities to calculate SFG spectra of long reactive trajectories including proton transfer events. Our simulations show that H3O+ ions cause two distinct changes in phase-resolved SFG spectra: first, a low-frequency tail due to the vibrations of H3O+ and its first hydration shell, analogous to the bulk proton continuum, and second, an enhanced hydrogen-bonded band due to the ion-induced static field polarizing molecules in deeper layers. Our calculations confirm that changes in the SFG spectra of acidic solutions are caused by hydronium ions preferentially residing at the interface.
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Affiliation(s)
- Miguel de la Puente
- PASTEUR, Department of Chemistry, École Normale Supérieur, PSL University, Sorbonne Université, CNRS, 75005 Paris, France
| | - Axel Gomez
- PASTEUR, Department of Chemistry, École Normale Supérieur, PSL University, Sorbonne Université, CNRS, 75005 Paris, France
| | - Damien Laage
- PASTEUR, Department of Chemistry, École Normale Supérieur, PSL University, Sorbonne Université, CNRS, 75005 Paris, France
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16
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Kapil V, Kovács DP, Csányi G, Michaelides A. First-principles spectroscopy of aqueous interfaces using machine-learned electronic and quantum nuclear effects. Faraday Discuss 2024; 249:50-68. [PMID: 37799072 PMCID: PMC10845015 DOI: 10.1039/d3fd00113j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Accepted: 07/18/2023] [Indexed: 10/07/2023]
Abstract
Vibrational spectroscopy is a powerful approach to visualising interfacial phenomena. However, extracting structural and dynamical information from vibrational spectra is a challenge that requires first-principles simulations, including non-Condon and quantum nuclear effects. We address this challenge by developing a machine-learning enhanced first-principles framework to speed up predictive modelling of infrared, Raman, and sum-frequency generation spectra. Our approach uses machine learning potentials that encode quantum nuclear effects to generate quantum trajectories using simple molecular dynamics efficiently. In addition, we reformulate bulk and interfacial selection rules to express them unambiguously in terms of the derivatives of polarisation and polarisabilities of the whole system and predict these derivatives efficiently using fully-differentiable machine learning models of dielectric response tensors. We demonstrate our framework's performance by predicting the IR, Raman, and sum-frequency generation spectra of liquid water, ice and the water-air interface by achieving near quantitative agreement with experiments at nearly the same computational efficiency as pure classical methods. Finally, to aid the experimental discovery of new phases of nanoconfined water, we predict the temperature-dependent vibrational spectra of monolayer water across the solid-hexatic-liquid phases transition.
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Affiliation(s)
- Venkat Kapil
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK.
| | | | - Gábor Csányi
- Engineering Laboratory, University of Cambridge, Cambridge, CB2 1PZ, UK
| | - Angelos Michaelides
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK.
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17
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Chiang KY, Yu X, Yu CC, Seki T, Sun S, Bonn M, Nagata Y. Bulklike Vibrational Coupling of Surface Water Revealed by Sum-Frequency Generation Spectroscopy. PHYSICAL REVIEW LETTERS 2023; 131:256202. [PMID: 38181372 DOI: 10.1103/physrevlett.131.256202] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2022] [Revised: 10/10/2023] [Accepted: 10/30/2023] [Indexed: 01/07/2024]
Abstract
Vibrational coupling between interfacial water molecules is important for energy dissipation after on-water chemistry, yet intensely debated. Here, we quantify the interfacial vibrational coupling strength through the linewidth of surface-specific vibrational spectra of the water's O─H (O─D) stretch region for neat H_{2}O/D_{2}O and their isotopic mixtures. The local-field-effect-corrected experimental SFG spectra reveal that the vibrational coupling between hydrogen-bonded interfacial water O─H groups is comparable to that in bulk water, despite the effective density reduction at the interface.
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Affiliation(s)
- Kuo-Yang Chiang
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Xiaoqing Yu
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Chun-Chieh Yu
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Takakazu Seki
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Shumei Sun
- Department of Physics and Applied Optics Beijing Area Major Laboratory, Beijing Normal University, Beijing 100875, China
| | - Mischa Bonn
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Yuki Nagata
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
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18
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Yamaguchi S, Takayama T, Otosu T. Appraisal of TIP4P-type models at water surface. J Chem Phys 2023; 159:171101. [PMID: 37909448 DOI: 10.1063/5.0171999] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2023] [Accepted: 10/03/2023] [Indexed: 11/03/2023] Open
Abstract
In view of the current situation in which non-polarizable rigid water models have been scarcely examined against surface-specific properties, we appraise TIP4P-type models at the liquid water surface on the basis of heterodyne-detected sum frequency generation (HD-SFG) spectroscopy. We find in the HD-SFG spectrum of the water surface that the peak frequency of the hydrogen-bonded OH band, the half width at half maximum of the hydrogen-bonded OH band, and the full width at half maximum of the free OH band are best reproduced by TIP4P, TIP4P/Ew, and TIP4P/Ice, respectively, whereas it is already well known that TIP4P/2005 best reproduces the surface tension. These TIP4P-type models perform better at the water surface in terms of the present appraisal items than some polarizable models in the literature.
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Affiliation(s)
- Shoichi Yamaguchi
- Department of Applied Chemistry, Graduate School of Science and Engineering, Saitama University, 255 Shimo-Okubo, Sakura, Saitama 338-8570, Japan
| | - Tetsuyuki Takayama
- Department of Applied Chemistry, Graduate School of Science and Engineering, Saitama University, 255 Shimo-Okubo, Sakura, Saitama 338-8570, Japan
| | - Takuhiro Otosu
- Department of Applied Chemistry, Graduate School of Science and Engineering, Saitama University, 255 Shimo-Okubo, Sakura, Saitama 338-8570, Japan
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19
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Shen H, Shen X, Wu Z. Simulating the isotropic Raman spectra of O-H stretching mode in liquid H 2O based on a machine learning potential: the influence of vibrational couplings. Phys Chem Chem Phys 2023; 25:28180-28188. [PMID: 37819214 DOI: 10.1039/d3cp03035k] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/13/2023]
Abstract
In this study, we trained a deep potential (DP) for H2O, an accurate machine learning (ML) potential. We performed molecular dynamics (MD) simulations of liquid water using the DP model (or DeePMD simulations). Our results showed that the DP model exhibits DFT-level accuracy, and the DeePMD simulation is a promising approach for modeling the structural properties of liquid water. Based on the DeePMD simulation trajectories, we calculated the isotropic Raman spectra of the O-H stretching mode using the surface-specific velocity-velocity correlation function (ssVVCF), showing that the DeePMD/ssVVCF approach can correctly capture the bimodal characteristics of the experimental Raman spectra, with one peak located near 3400 cm-1 and the other near 3250 cm-1. The success of the DeePMD/ssVVCF approach should be credited to (1) the DFT-level accuracy of the DP model for H2O, (2) the ssVVCF formulation considering the coupling between vibrational modes, and (3) non-Condon effects. Furthermore, the DeePMD simulations revealed that the anharmonic interactions between the coupled water molecules in the first and second hydration shells should play an essential role in the strong mixing of the H-O-H bending mode and the O-H stretching mode, leading to the delocalization of the O-H stretching band. In particular, increasing the strength of hydrogen bonds would enhance the bend-stretch coupling, leading to the red-shifting of the O-H vibrational spectra and the increase in the intensity of the shoulder around 3250 cm-1.
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Affiliation(s)
- Hujun Shen
- Guizhou Provincial Key Laboratory of Computational Nano-Material Science, Guizhou Education University, Guiyang 550018, China.
| | - Xu Shen
- National Center of Technology Innovation for Intelligent Design and Numerical Control, Huazhong University of Science and Technology, Wuhan, 430074, China
| | - Zhenhua Wu
- Department of Big Data and Artificial Intelligence, Guizhou Vocational Technology College of Electronics & Information, Kaili, 556000, China
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20
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Litman Y, Lan J, Nagata Y, Wilkins DM. Fully First-Principles Surface Spectroscopy with Machine Learning. J Phys Chem Lett 2023; 14:8175-8182. [PMID: 37671886 PMCID: PMC10510433 DOI: 10.1021/acs.jpclett.3c01989] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Accepted: 08/29/2023] [Indexed: 09/07/2023]
Abstract
Our current understanding of the structure and dynamics of aqueous interfaces at the molecular level has grown substantially due to the continuous development of surface-specific spectroscopies, such as vibrational sum-frequency generation (VSFG). As in other vibrational spectroscopies, we must turn to atomistic simulations to extract all of the information encoded in the VSFG spectra. The high computational cost associated with existing methods means that they have limitations in representing systems with complex electronic structure or in achieving statistical convergence. In this work, we combine high-dimensional neural network interatomic potentials and symmetry-adapted Gaussian process regression to overcome these constraints. We show that it is possible to model VSFG signals with fully ab initio accuracy using machine learning and illustrate the versatility of our approach on the water/air interface. Our strategy allows us to identify the main sources of theoretical inaccuracy and establish a clear pathway toward the modeling of surface-sensitive spectroscopy of complex interfaces.
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Affiliation(s)
- Yair Litman
- Yusuf
Hamied Department of Chemistry, University
of Cambridge, Lensfield Road, Cambridge CB2 1EW, U.K.
- Max
Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Jinggang Lan
- Department
of Chemistry, New York University, New York, New York 10003, United States
- Simons
Center for Computational Physical Chemistry at New York University, New York, New York 10003, United States
| | - Yuki Nagata
- Max
Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - David M. Wilkins
- Centre
for Quantum Materials and Technologies School of Mathematics and Physics, Queen’s University Belfast, Belfast BT7 1NN, Northern Ireland, United Kingdom
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21
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Zhang X, Arges CG, Kumar R. Computational Investigations of the Water Structure at the α-Al 2O 3(0001)-Water Interface. THE JOURNAL OF PHYSICAL CHEMISTRY. C, NANOMATERIALS AND INTERFACES 2023; 127:15600-15610. [PMID: 37593231 PMCID: PMC10428097 DOI: 10.1021/acs.jpcc.3c03243] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/16/2023] [Revised: 07/03/2023] [Indexed: 08/19/2023]
Abstract
The α-Al2O3(0001)-water interface is investigated using ab initio molecular dynamics (AIMD) simulations. The spectral signatures of the vibrational sum frequency generation (vSFG) spectra of OH stretching mode for water molecules at the interface are related to the interfacial water orientation, hydrogen bond network, and water dissociation process at different water/alumina interfaces. Significant differences are found between alumina surfaces at different hydroxylation levels, namely, Al-terminated and O-terminated α-Al2O3(0001). By calculating the vibrational sum frequency generation spectrum and its imaginary component from AIMD results, the structure of interfacial waters as well as the termination of alumina slab are related to the spectral signatures of vSFG data.
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Affiliation(s)
- Xiaoliu Zhang
- Department
of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803-1804, United
States
| | - Christopher G. Arges
- Department
of Chemical Engineering, Pennsylvania State
University, University Park, Pennsylvania 16802, United States
| | - Revati Kumar
- Department
of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803-1804, United
States
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22
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Mazarei E, Penschke C, Saalfrank P. Band Gap Engineering in Two-Dimensional Materials by Functionalization: Methylation of Graphene and Graphene Bilayers. ACS OMEGA 2023; 8:22026-22041. [PMID: 37360460 PMCID: PMC10286272 DOI: 10.1021/acsomega.3c02068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/28/2023] [Accepted: 05/08/2023] [Indexed: 06/28/2023]
Abstract
Graphene is well-known for its unique combination of electrical and mechanical properties. However, its vanishing band gap limits the use of graphene in microelectronics. Covalent functionalization of graphene has been a common approach to address this critical issue and introduce a band gap. In this Article, we systematically analyze the functionalization of single-layer graphene (SLG) and bilayer graphene (BLG) with methyl (CH3) using periodic density functional theory (DFT) at the PBE+D3 level of theory. We also include a comparison of methylated single-layer and bilayer graphene, as well as a discussion of different methylation options (radicalic, cationic, and anionic). For SLG, methyl coverages ranging from 1/8 to 1/1, (i.e., the fully methylated analogue of graphane) are considered. We find that up to a coverage θ of 1/2, graphene readily accepts CH3, with neighbor CH3 groups preferring trans positions. Above θ = 1/2, the tendency to accept further CH3 weakens and the lattice constant increases. The band gap behaves less regularly, but overall it increases with increasing methyl coverage. Thus, methylated graphene shows potential for developing band gap-tuned microelectronics devices and may offer further functionalization options. To guide in the interpretation of methylation experiments, vibrational signatures of various species are characterized by normal-mode analysis (NMA), their vibrational density of states (VDOS), and infrared (IR) spectra, the latter two are obtained from ab initio molecular dynamics (AIMD) in combination with a velocity-velocity autocorrelation function (VVAF) approach.
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Affiliation(s)
- Elham Mazarei
- Institut
für Chemie, Universität Potsdam, Karl-Liebknecht-Str. 24-25, D-14476 Potsdam, Germany
| | - Christopher Penschke
- Institut
für Chemie, Universität Potsdam, Karl-Liebknecht-Str. 24-25, D-14476 Potsdam, Germany
| | - Peter Saalfrank
- Institut
für Chemie, Universität Potsdam, Karl-Liebknecht-Str. 24-25, D-14476 Potsdam, Germany
- Institut
für Physik und Astronomie, Universität
Potsdam, Karl-Liebknecht-Str.
24-25, D-14476 Potsdam, Germany
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23
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Konstantinovsky D, Yan ECY, Hammes-Schiffer S. Characterizing Interfaces by Voronoi Tessellation. J Phys Chem Lett 2023; 14:5260-5266. [PMID: 37265175 PMCID: PMC10344600 DOI: 10.1021/acs.jpclett.3c01159] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
The chemistry of interfaces differs markedly from that of the bulk. Calculation of interfacial properties depends strongly on the definition of the interface, which can lead to ambiguous results that vary between studies. There is a need for a method that can explicitly define the interfaces and boundaries in molecular systems. Voronoi tessellation offers an attractive solution to this problem through its ability to determine neighbors among specified groups of atoms. Here we discuss three cases where Voronoi tessellation combined with modeling of vibrational sum frequency generation (SFG) spectroscopy yields relevant insights: the breakdown of the air-water interface into clear and intuitive molecular layers, the study of the hydration shell in biological systems, and the acceleration of difficult spectral calculations where intermolecular vibrational couplings dominate. The utility of Voronoi tessellation has broad applications that extend beyond any single type of spectroscopy or system.
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Affiliation(s)
- Daniel Konstantinovsky
- Department of Chemistry, Yale University, New Haven, CT, USA 06511
- Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA 06511
| | - Elsa C. Y. Yan
- Department of Chemistry, Yale University, New Haven, CT, USA 06511
| | - Sharon Hammes-Schiffer
- Department of Chemistry, Yale University, New Haven, CT, USA 06511
- Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA 06511
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24
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Sanchez-Burgos I, Muniz MC, Espinosa JR, Panagiotopoulos AZ. A Deep Potential model for liquid-vapor equilibrium and cavitation rates of water. J Chem Phys 2023; 158:2889532. [PMID: 37158636 DOI: 10.1063/5.0144500] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2023] [Accepted: 03/30/2023] [Indexed: 05/10/2023] Open
Abstract
Computational studies of liquid water and its phase transition into vapor have traditionally been performed using classical water models. Here, we utilize the Deep Potential methodology-a machine learning approach-to study this ubiquitous phase transition, starting from the phase diagram in the liquid-vapor coexistence regime. The machine learning model is trained on ab initio energies and forces based on the SCAN density functional, which has been previously shown to reproduce solid phases and other properties of water. Here, we compute the surface tension, saturation pressure, and enthalpy of vaporization for a range of temperatures spanning from 300 to 600 K and evaluate the Deep Potential model performance against experimental results and the semiempirical TIP4P/2005 classical model. Moreover, by employing the seeding technique, we evaluate the free energy barrier and nucleation rate at negative pressures for the isotherm of 296.4 K. We find that the nucleation rates obtained from the Deep Potential model deviate from those computed for the TIP4P/2005 water model due to an underestimation in the surface tension from the Deep Potential model. From analysis of the seeding simulations, we also evaluate the Tolman length for the Deep Potential water model, which is (0.091 ± 0.008) nm at 296.4 K. Finally, we identify that water molecules display a preferential orientation in the liquid-vapor interface, in which H atoms tend to point toward the vapor phase to maximize the enthalpic gain of interfacial molecules. We find that this behavior is more pronounced for planar interfaces than for the curved interfaces in bubbles. This work represents the first application of Deep Potential models to the study of liquid-vapor coexistence and water cavitation.
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Affiliation(s)
- Ignacio Sanchez-Burgos
- Maxwell Centre, Cavendish Laboratory, Department of Physics, University of Cambridge, J J Thomson Avenue,Cambridge CB3 0HE, United Kingdom
- Department of Chemical and Biological Engineering, Princeton University, Princeton, New Jersey 08544, USA
| | - Maria Carolina Muniz
- Department of Chemical and Biological Engineering, Princeton University, Princeton, New Jersey 08544, USA
| | - Jorge R Espinosa
- Maxwell Centre, Cavendish Laboratory, Department of Physics, University of Cambridge, J J Thomson Avenue,Cambridge CB3 0HE, United Kingdom
- Departamento de Química Fisica, Facultad de Ciencias Químicas, Universidad Complutense de Madrid, 28040 Madrid, Spain
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25
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Konstantinovsky D, Perets EA, Santiago T, Olesen K, Wang Z, Soudackov AV, Yan ECY, Hammes-Schiffer S. Design of an Electrostatic Frequency Map for the NH Stretch of the Protein Backbone and Application to Chiral Sum Frequency Generation Spectroscopy. J Phys Chem B 2023; 127:2418-2429. [PMID: 36916645 PMCID: PMC10409516 DOI: 10.1021/acs.jpcb.3c00217] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/15/2023]
Abstract
We develop an electrostatic map for the vibrational NH stretch (amide A) of the protein backbone with a focus on vibrational chiral sum frequency generation spectroscopy (chiral SFG). Chiral SFG has been used to characterize protein secondary structure at interfaces using the NH stretch and to investigate chiral water superstructures around proteins using the OH stretch. Interpretation of spectra has been complicated because the NH stretch and OH stretch overlap spectrally. Although an electrostatic map for water OH developed by Skinner and co-workers was used previously to calculate the chiral SFG response of water structures around proteins, a map for protein NH that is directly responsive to biological complexity has yet to be developed. Here, we develop such a map, linking the local electric field to vibrational frequencies and transition dipoles. We apply the map to two protein systems and achieve much better agreement with experiment than was possible in our previous studies. We show that couplings between NH and OH vibrations are crucial to the line shape, which informs the interpretation of chiral SFG spectra, and that the chiral NH stretch response is sensitive to small differences in structure. This work increases the utility of the NH stretch in biomolecular spectroscopy.
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Affiliation(s)
- Daniel Konstantinovsky
- Department of Chemistry, Yale University, New Haven, CT 06520, United States
- Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, United States
| | - Ethan A. Perets
- Department of Chemistry, Yale University, New Haven, CT 06520, United States
- Current Address: Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138, United States
| | - Ty Santiago
- Department of Chemistry, Yale University, New Haven, CT 06520, United States
| | - Kristian Olesen
- Department of Chemistry, Yale University, New Haven, CT 06520, United States
| | - Zhijie Wang
- Department of Chemistry, Yale University, New Haven, CT 06520, United States
| | | | - Elsa C. Y. Yan
- Department of Chemistry, Yale University, New Haven, CT 06520, United States
| | - Sharon Hammes-Schiffer
- Department of Chemistry, Yale University, New Haven, CT 06520, United States
- Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, United States
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26
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Bandyopadhyay D, Bhanja K, Choudhury N. On the Propensity of Excess Hydroxide Ions at the Alcohol Monolayer-Water Interface. J Phys Chem B 2023; 127:783-793. [PMID: 36639623 DOI: 10.1021/acs.jpcb.2c05719] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
Atomistic molecular dynamics simulations have been employed to study the self-ion (H+ and OH-) distribution at the interface between long-chain C16-OH alcohol (cetyl alcohol) monolayer and water. It is well known that the free air-water interface is acidic due to accumulation of the hydronium (H3O+) ions at the interface. In the present study, we have observed that contrary to the air-water interface, at the long-chain alcohol monolayer-water interface, it is the hydroxide (OH-) ion, not the hydronium ion (H3O+) that gets accumulated. By calculating the potential of mean forces, it is confirmed that there is extra stabilization for the OH- ions at the interface relative to the bulk, but no such stabilization is observed for the H3O+ ions. By analyzing the interaction of the self-ions with other constituents in the medium, it is clearly shown that the favorable interaction of the OH- ions with the alcoholic -OH groups stabilizes this ion at the interface. By calculating coordination numbers of the self-ions it is observed that around 50% water neighbors are substituted by alcoholic -OH in case of the hydroxide ion at the interface, whereas in the case of hydronium ions, only 15% water neighbors are substituted by the alcoholic -OH. The most interesting observation about the local structure and H-bonding pattern is that the hydroxide ion acts solely as the H-bond acceptor, but the hydronium ion acts only as the H-bond donor.
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Affiliation(s)
| | - Kalyan Bhanja
- Heavy Water Division, Bhabha Atomic Research Centre, Mumbai400 085, India
| | - Niharendu Choudhury
- Theoretical Chemistry Section, Chemistry Division, Bhabha Atomic Research Centre, Mumbai400 085, India.,Homi Bhabha National Institute, Anushaktinagar, Mumbai400 094, India
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27
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Strunge K, Madzharova F, Jensen F, Weidner T, Nagata Y. Theoretical Sum Frequency Generation Spectra of Protein Amide with Surface-Specific Velocity-Velocity Correlation Functions. J Phys Chem B 2022; 126:8571-8578. [PMID: 36194760 DOI: 10.1021/acs.jpcb.2c04321] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
Vibrational sum frequency generation (vSFG) spectroscopy is widely used to probe the protein structure at interfaces. Because protein vSFG spectra are complex, they can only provide detailed structural information if combined with computer simulations of protein molecular dynamics and spectra calculations. We show how vSFG spectra can be accurately modeled using a surface-specific velocity-velocity scheme based on ab initio normal modes. Our calculated vSFG spectra show excellent agreement with the experimental sum frequency spectrum of LTα14 peptide and provide insight into the origin of the characteristic α-helical amide I peak. Analysis indicates that the peak shape can be explained largely by two effects: (1) the uncoupled response of amide groups located on opposite sides of the α-helix will have different orientations with respect to the interface and therefore different local environments affecting the local mode vibrations and (2) vibrational splitting from nearest neighbor coupling evaluated as inter-residue vibrational correlation. The conclusion is consistent with frequency mapping techniques with an empirically based ensemble of peptide structures, thus showing how time correlation approaches and frequency mapping techniques can give independent yet complementary molecular descriptions of protein vSFG. These models reveal the sensitive relationship between protein structure and their amide I response, allowing exploitation of the complicated molecular vibrations and their interference to derive the structures of proteins under native conditions at interfaces.
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Affiliation(s)
- Kris Strunge
- Department of Chemistry, Aarhus University, Langelandsgade 140, 8000 Aarhus C, Denmark
| | - Fani Madzharova
- Department of Chemistry, Aarhus University, Langelandsgade 140, 8000 Aarhus C, Denmark
| | - Frank Jensen
- Department of Chemistry, Aarhus University, Langelandsgade 140, 8000 Aarhus C, Denmark
| | - Tobias Weidner
- Department of Chemistry, Aarhus University, Langelandsgade 140, 8000 Aarhus C, Denmark
| | - Yuki Nagata
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
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28
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Arano-Martinez JA, Martínez-González CL, Salazar MI, Torres-Torres C. A Framework for Biosensors Assisted by Multiphoton Effects and Machine Learning. BIOSENSORS 2022; 12:710. [PMID: 36140093 PMCID: PMC9496380 DOI: 10.3390/bios12090710] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/31/2022] [Revised: 08/22/2022] [Accepted: 08/25/2022] [Indexed: 11/25/2022]
Abstract
The ability to interpret information through automatic sensors is one of the most important pillars of modern technology. In particular, the potential of biosensors has been used to evaluate biological information of living organisms, and to detect danger or predict urgent situations in a battlefield, as in the invasion of SARS-CoV-2 in this era. This work is devoted to describing a panoramic overview of optical biosensors that can be improved by the assistance of nonlinear optics and machine learning methods. Optical biosensors have demonstrated their effectiveness in detecting a diverse range of viruses. Specifically, the SARS-CoV-2 virus has generated disturbance all over the world, and biosensors have emerged as a key for providing an analysis based on physical and chemical phenomena. In this perspective, we highlight how multiphoton interactions can be responsible for an enhancement in sensibility exhibited by biosensors. The nonlinear optical effects open up a series of options to expand the applications of optical biosensors. Nonlinearities together with computer tools are suitable for the identification of complex low-dimensional agents. Machine learning methods can approximate functions to reveal patterns in the detection of dynamic objects in the human body and determine viruses, harmful entities, or strange kinetics in cells.
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Affiliation(s)
- Jose Alberto Arano-Martinez
- Sección de Estudios de Posgrado e Investigación, Escuela Superior de Ingeniería Mecánica y Eléctrica, Unidad Zacatenco, Instituto Politécnico Nacional, Mexico City 07738, Mexico
| | - Claudia Lizbeth Martínez-González
- Sección de Estudios de Posgrado e Investigación, Escuela Superior de Ingeniería Mecánica y Eléctrica, Unidad Zacatenco, Instituto Politécnico Nacional, Mexico City 07738, Mexico
| | - Ma Isabel Salazar
- Departamento de Microbiología, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Mexico City 11340, Mexico
| | - Carlos Torres-Torres
- Sección de Estudios de Posgrado e Investigación, Escuela Superior de Ingeniería Mecánica y Eléctrica, Unidad Zacatenco, Instituto Politécnico Nacional, Mexico City 07738, Mexico
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29
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Yu CC, Seki T, Chiang KY, Tang F, Sun S, Bonn M, Nagata Y. Polarization-Dependent Heterodyne-Detected Sum-Frequency Generation Spectroscopy as a Tool to Explore Surface Molecular Orientation and Ångström-Scale Depth Profiling. J Phys Chem B 2022; 126:6113-6124. [PMID: 35849538 PMCID: PMC9421650 DOI: 10.1021/acs.jpcb.2c02178] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2022] [Revised: 07/01/2022] [Indexed: 11/28/2022]
Abstract
Sum-frequency generation (SFG) spectroscopy provides a unique optical probe for interfacial molecules with interface-specificity and molecular specificity. SFG measurements can be further carried out at different polarization combinations, but the target of the polarization-dependent SFG is conventionally limited to investigating the molecular orientation. Here, we explore the possibility of polarization-dependent SFG (PD-SFG) measurements with heterodyne detection (HD-PD-SFG). We stress that HD-PD-SFG enables accurate determination of the peak amplitude, a key factor of the PD-SFG data. Subsequently, we outline that HD-PD-SFG can be used not only for estimating the molecular orientation but also for investigating the interfacial dielectric profile and studying the depth profile of molecules. We further illustrate the variety of combined simulation and PD-SFG studies.
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Affiliation(s)
- Chun-Chieh Yu
- Max
Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Takakazu Seki
- Max
Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Kuo-Yang Chiang
- Max
Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Fujie Tang
- Department
of Physics, Temple University, Philadelphia, Pennsylvania 19122, United States
| | - Shumei Sun
- Department
of Physics and Applied Optics Beijing Area Major Laboratory, Beijing Normal University, Beijing 100875, China
| | - Mischa Bonn
- Max
Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Yuki Nagata
- Max
Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
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30
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Perets EA, Olesen KB, Yan ECY. Chiral Sum Frequency Generation Spectroscopy Detects Double-Helix DNA at Interfaces. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2022; 38:5765-5778. [PMID: 35482888 DOI: 10.1021/acs.langmuir.2c00365] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Many DNA-based technologies involve the immobilization of DNA and therefore require a fundamental understanding of the DNA structure-function relationship at interfaces. We present three immobilization methods compatible with chiral sum frequency generation (SFG) spectroscopy at interfaces. They are the "anchor" method for covalently attaching DNA on a glass surface, the "island" method for dropcasting DNA on solid substrates, and the "buoy" method using a hydrocarbon moiety for localizing DNA at the air-water interface. Although SFG was previously used to probe DNA, the chiral and achiral SFG responses of single-stranded and double-stranded DNA have not been compared systemically. Using the three immobilization methods, we obtain the achiral and chiral C-H stretching spectra. The results introduce four potential applications of chiral SFG. First, chiral SFG gives null response from single-stranded DNA but prominent signals from double-stranded DNA, providing a simple binary readout for label-free detection of DNA hybridization. Second, with heterodyne detection, chiral SFG gives an opposite-signed spectral response useful for distinguishing native (D-) right-handed double helix from non-native (L-) left-handed double helix. Third, chiral SFG captures the aromatic C-H stretching modes of nucleobases that emerge upon hybridization, revealing the power of chiral SFG to probe highly localized molecular structures within DNA. Finally, chiral SFG is sensitive to macroscopic chirality but not local chiral centers and thus can detect not only canonical antiparallel double helix but also other DNA secondary structures, such as a poly-adenine parallel double helix. Our work benchmarks the SFG responses of DNA immobilized by the three distinct methods, building a basis for new chiral SFG applications to solve fundamental and biotechnological problems.
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Affiliation(s)
- Ethan A Perets
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - Kristian B Olesen
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - Elsa C Y Yan
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
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31
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Das B, Chandra A. Effects of Stearyl Alcohol Monolayer on the Structure, Dynamics and Vibrational Sum Frequency Generation Spectroscopy of Interfacial Water. Phys Chem Chem Phys 2022; 24:7374-7386. [DOI: 10.1039/d1cp04944e] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The structure, dynamics and vibrational spectroscopy of water surface covered by a monolayer of stearyl alcohol (STA) are investigated by means of molecular dynamics simulations and vibrational sum frequency generation...
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32
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Konstantinovsky D, Perets EA, Yan ECY, Hammes-Schiffer S. Simulation of the Chiral Sum Frequency Generation Response of Supramolecular Structures Requires Vibrational Couplings. J Phys Chem B 2021; 125:12072-12081. [PMID: 34699209 PMCID: PMC9059521 DOI: 10.1021/acs.jpcb.1c06360] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Chiral vibrational sum frequency generation (SFG) spectroscopy probes the structure of the solvation shell around chiral macromolecules. The dominant theoretical framework for understanding the origin of chiral SFG signals is based on the analysis of molecular symmetry, which assumes no interaction between molecules. However, water contains strong intermolecular interactions that significantly affect its properties. Here, the role of intermolecular vibrational coupling in the chiral SFG response of the O-H stretch of water surrounding an antiparallel β-sheet at the vacuum-water interface is investigated. Both intramolecular and intermolecular couplings between O-H groups are required to simulate the full lineshape of the chiral SFG signal. This dependence is also observed for a chiral water dimer, illustrating that this phenomenon is not specific to larger systems. We also find that a dimer of C3v molecules predicted to be chirally SFG-inactive by the symmetry-based theory can generate a chiral SFG signal when intermolecular couplings are considered, suggesting that even highly symmetric solvent molecules may produce chiral SFG signals when interacting with a chiral solute. The consideration of intermolecular couplings extends the prevailing theory of the chiral SFG response to structures larger than individual molecules and provides guidelines for future modeling.
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Affiliation(s)
- Daniel Konstantinovsky
- Department of Chemistry, Yale University, New Haven, CT 06520, USA
- Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA
| | - Ethan A. Perets
- Department of Chemistry, Yale University, New Haven, CT 06520, USA
| | - E. Chui-Ying Yan
- Department of Chemistry, Yale University, New Haven, CT 06520, USA
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33
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Ogawa T, Ohashi H, Anilkumar GM, Tamaki T, Yamaguchi T. Suitable acid groups and density in electrolytes to facilitate proton conduction. Phys Chem Chem Phys 2021; 23:23778-23786. [PMID: 34643626 DOI: 10.1039/d1cp00718a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Proton conducting materials suffer from low proton conductivity under low-relative humidity (RH) conditions. Previously, it was reported that acid-acid interactions, where acids interact with each other at close distances, can facilitate proton conduction without water movement and are promising for overcoming this drawback [T. Ogawa, H. Ohashi, T. Tamaki and T. Yamaguchi, Chem. Phys. Lett., 2019, 731, 136627]. However, acid groups have not been compared to find a suitable acid group and density for the interaction, which is important to experimentally synthesize the material. Here, we performed ab initio calculations to identify acid groups and acid densities as a polymer design that effectively causes acid-acid interactions. The evaluation method employed parameters based on several different optimized coordination interactions of acids and water molecules. The results show that the order of the abilities of polymer electrolytes to readily induce acid-acid interactions is hydrocarbon-based phosphonated polymers > phosphonated aromatic hydrocarbon polymers > perfluorosulfonic acid polymers ≈ perfluorophosphonic acid polymers > sulfonated aromatic hydrocarbon polymers. The acid-acid interaction becomes stronger as the distance between acids decreases. The preferable distance between phosphonate moieties is within 13 Å.
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Affiliation(s)
- Takaya Ogawa
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Nagatsuta 4259, Midori-ku, Yokohama 226-8503, Japan.
| | - Hidenori Ohashi
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Nagatsuta 4259, Midori-ku, Yokohama 226-8503, Japan.
| | - Gopinathan M Anilkumar
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Nagatsuta 4259, Midori-ku, Yokohama 226-8503, Japan. .,Research & Development Center, Noritake, Co., Ltd., 300 Higashiyama, Miyoshi cho, Miyoshi, Aichi 470-0293, Japan
| | - Takanori Tamaki
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Nagatsuta 4259, Midori-ku, Yokohama 226-8503, Japan. .,Kanagawa Institute of Industrial Science and Technology, 4259 Nagatsuta, Midori-ku, Yokohama 226-8503, Japan
| | - Takeo Yamaguchi
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Nagatsuta 4259, Midori-ku, Yokohama 226-8503, Japan. .,Kanagawa Institute of Industrial Science and Technology, 4259 Nagatsuta, Midori-ku, Yokohama 226-8503, Japan
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34
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Ishiyama T. Energy relaxation dynamics of hydrogen-bonded OH vibration conjugated with free OH bond at an air/water interface. J Chem Phys 2021; 155:154703. [PMID: 34686042 DOI: 10.1063/5.0069618] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
Abstract
Vibrational energy relaxation dynamics of the excited hydrogen-bonded (H-bonded) OH conjugated with free OH (OD) at an air/water (for both pure water and isotopically diluted water) interface are elucidated via non-equilibrium ab initio molecular dynamics (NE-AIMD) simulations. The calculated results are compared with those of the excited H-bonded OH in bulk liquid water reported previously. In the case of pure water, the relaxation timescale (vibrational lifetime) of the excited H-bonded OH at the interface is T1 = 0.13 ps, which is slightly larger than that in the bulk (T1 = 0.11 ps). Conversely, in the case of isotopically diluted water, the relaxation timescale of T1 = 0.74 ps in the bulk decreases to T1 = 0.26 ps at the interface, suggesting that the relaxation dynamics of the H-bonded OH are strongly dependent on the surrounding H-bond environments particularly for the isotopically diluted conditions. The relaxation paths and their rates are estimated by introducing certain constraints on the vibrational modes except for the target path in the NE-AIMD simulation to decompose the total energy relaxation rate into contributions to possible relaxation pathways. It is found that the main relaxation pathway in the case of pure water is due to intermolecular OH⋯OH vibrational coupling, which is similar to the relaxation in the bulk. In the case of isotopically diluted water, the main pathway is due to intramolecular stretch and bend couplings, which show more efficient relaxation than in the bulk because of strong H-bonding interactions specific to the air/water interface.
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Affiliation(s)
- Tatsuya Ishiyama
- Department of Applied Chemistry, Graduate School of Science and Engineering, University of Toyama, Toyama 930-8555, Japan
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35
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Shepherd S, Lan J, Wilkins DM, Kapil V. Efficient Quantum Vibrational Spectroscopy of Water with High-Order Path Integrals: From Bulk to Interfaces. J Phys Chem Lett 2021; 12:9108-9114. [PMID: 34523941 DOI: 10.1021/acs.jpclett.1c02574] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Vibrational spectroscopy is key in probing the interplay between the structure and dynamics of aqueous systems. To map different regions of experimental spectra to the microscopic structure of a system, it is important to combine them with first-principles atomistic simulations that incorporate the quantum nature of nuclei. Here we show that the large cost of calculating the quantum vibrational spectra of aqueous systems can be dramatically reduced compared with standard path integral methods by using approximate quantum dynamics based on high-order path integrals. Together with state-of-the-art machine-learned electronic properties, our approach gives an excellent description not only of the infrared and Raman spectra of bulk water but also of the 2D correlation and the more challenging sum-frequency generation spectra of the water-air interface. This paves the way for understanding complex interfaces such as water encapsulated between or in contact with hydrophobic and hydrophilic materials through robust and inexpensive surface-sensitive and multidimensional spectra with first-principles accuracy.
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Affiliation(s)
- Sam Shepherd
- Atomistic Simulation Centre, School of Mathematics and Physics, Queen's University Belfast, Belfast BT7 1NN, Northern Ireland, United Kingdom
| | - Jinggang Lan
- Department of Chemistry, University of Zürich, Zürich 8057, Switzerland
| | - David M Wilkins
- Atomistic Simulation Centre, School of Mathematics and Physics, Queen's University Belfast, Belfast BT7 1NN, Northern Ireland, United Kingdom
| | - Venkat Kapil
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW,United Kingdom
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36
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Melani G, Nagata Y, Saalfrank P. Vibrational energy relaxation of interfacial OH on a water-covered α-Al 2O 3(0001) surface: a non-equilibrium ab initio molecular dynamics study. Phys Chem Chem Phys 2021; 23:7714-7723. [PMID: 32857089 DOI: 10.1039/d0cp03777j] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
Vibrational relaxation of adsorbates is a sensitive tool to probe energy transfer at gas/solid and liquid/solid interfaces. The most direct way to study relaxation dynamics uses time-resolved spectroscopy. Here we report on a non-equilibrium ab initio molecular dynamics (NE-AIMD) methodology to model vibrational relaxation of OH vibrations on a hydroxylated, water-covered α-Al2O3(0001) surface. In our NE-AIMD approach, after exciting selected O-H bonds their coupling to surface phonons and to the water adlayer is analyzed in detail, by following both the energy flow in time, as well as the time-evolution of Vibrational Density of States (VDOS) curves. The latter are obtained from Time-dependent Correlation Functions (TCFs) and serve as prototypical, generic representatives of time-resolved vibrational spectra. As most important results, (i) we find a few-picosecond lifetime of the excited modes and (ii) identify both hydrogen-bonded aluminols and water molecules in the adsorbed water layer as main dissipative channels, while the direct coupling to Al2O3 surface phonons is of minor importance on the timescales of interest. Our NE-AIMD/TCF methodology is powerful for complex adsorbate systems, in principle even reacting ones, and opens a way towards time-resolved vibrational spectroscopy.
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Affiliation(s)
- Giacomo Melani
- Institut für Chemie, Universität Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland.
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37
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Ishiyama T. Energy relaxation path of excited free OH vibration at an air/water interface revealed by nonequilibrium ab initio molecular dynamics simulation. J Chem Phys 2021; 154:104708. [PMID: 33722032 DOI: 10.1063/5.0038709] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022] Open
Abstract
Nonequilibrium ab initio molecular dynamics (NE-AIMD) simulations are conducted at an air/water interface to elucidate the vibrational energy relaxation path of excited non-hydrogen-bonded (free) OH. A recent time-resolved vibrational sum frequency generation (TR-VSFG) spectroscopy experiment revealed that the relaxation time scales of free OH at the surface of pure water and isotopically diluted water are very similar to each other. In the present study, the dynamics of free OH excited at the surface of pure water and deuterated water are examined with an NE-AIMD simulation, which reproduces the experimentally observed features. The relaxation paths are examined by introducing constraints for the bonds and angles of water molecules relevant to specific vibrational modes in NE-AIMD simulations. In the case of free OH relaxation at the pure water surface, stretching vibrational coupling with the conjugate bond makes a significant contribution to the relaxation path. In the case of the isotopically diluted water surface, the bend (HOD)-stretching (OD) combination band couples with the free OH vibration, generating a relaxation rate similar to that in the pure water case. It is also found that the reorientation of the free OH bond contributes substantially to the relaxation of the free OH vibrational frequency component measured by TR-VSFG spectroscopy.
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Affiliation(s)
- Tatsuya Ishiyama
- Department of Applied Chemistry, Graduate School of Science and Engineering, University of Toyama, Toyama 930-8555, Japan
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38
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Ojha D, Kühne TD. Hydrogen bond dynamics of interfacial water molecules revealed from two-dimensional vibrational sum-frequency generation spectroscopy. Sci Rep 2021; 11:2456. [PMID: 33510246 PMCID: PMC7844302 DOI: 10.1038/s41598-021-81635-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2020] [Accepted: 01/06/2021] [Indexed: 11/17/2022] Open
Abstract
Vibrational sum-frequency generation (vSFG) spectroscopy allows the study of the structure and dynamics of interfacial systems. In the present work, we provide a simple recipe, based on a narrowband IR pump and broadband vSFG probe technique, to computationally obtain the two-dimensional vSFG spectrum of water molecules at the air-water interface. Using this technique, to study the time-dependent spectral evolution of hydrogen-bonded and free water molecules, we demonstrate that at the interface, the vibrational spectral dynamics of the free OH bond is faster than that of the bonded OH mode.
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Affiliation(s)
- Deepak Ojha
- Dynamics of Condensed Matter and Center for Sustainable Systems Design, Chair of Theoretical Chemistry, Paderborn University, Warburger Str. 100, 33098, Paderborn, Germany
| | - Thomas D Kühne
- Dynamics of Condensed Matter and Center for Sustainable Systems Design, Chair of Theoretical Chemistry, Paderborn University, Warburger Str. 100, 33098, Paderborn, Germany.
- Paderborn Center for Parallel Computing and Institute for Lightweight Design, Paderborn University, Warburger Str. 100, 33098, Paderborn, Germany.
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39
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David R, Tuladhar A, Zhang L, Arges C, Kumar R. Effect of Oxidation Level on the Interfacial Water at the Graphene Oxide-Water Interface: From Spectroscopic Signatures to Hydrogen-Bonding Environment. J Phys Chem B 2020; 124:8167-8178. [PMID: 32804501 PMCID: PMC7503515 DOI: 10.1021/acs.jpcb.0c05282] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
![]()
The interfacial region
of the graphene oxide (GO)-water system
is nonhomogenous due to the presence of two distinct domains: an oxygen-rich
surface and a graphene-like region. The experimental vibrational sum-frequency
generation (vSFG) spectra are distinctly different for the fully oxidized
GO-water interface as compared to the reduced GO-water case. Computational
investigations using ab initio molecular dynamics were performed to
determine the molecular origins of the different spectroscopic features.
The simulations were first validated by comparing the simulated vSFG
spectra to those from the experiment, and the contributions to the
spectra from different hydrogen bonding environments and interfacial
water orientations were determined as a function of the oxidation
level of the GO sheet. The ab initio simulations also revealed the
reactive nature of the GO-water interface.
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Affiliation(s)
- Rolf David
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States
| | - Aashish Tuladhar
- Physical Sciences Division, Physical and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Le Zhang
- Cain Department of Chemical Engineering, Louisiana State University, Baton Rouge, Louisiana 70803, United States
| | - Christopher Arges
- Cain Department of Chemical Engineering, Louisiana State University, Baton Rouge, Louisiana 70803, United States
| | - Revati Kumar
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States
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40
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Ojha D, Kühne TD. "On-The-Fly" Calculation of the Vibrational Sum-Frequency Generation Spectrum at the Air-Water Interface. Molecules 2020; 25:E3939. [PMID: 32872259 PMCID: PMC7504776 DOI: 10.3390/molecules25173939] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2020] [Revised: 08/23/2020] [Accepted: 08/25/2020] [Indexed: 12/24/2022] Open
Abstract
In the present work, we provide an electronic structure based method for the "on-the-fly" determination of vibrational sum frequency generation (v-SFG) spectra. The predictive power of this scheme is demonstrated at the air-water interface. While the instantaneous fluctuations in dipole moment are obtained using the maximally localized Wannier functions, the fluctuations in polarizability are approximated to be proportional to the second moment of Wannier functions. The spectrum henceforth obtained captures the signatures of hydrogen bond stretching, bending, as well as low-frequency librational modes.
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Affiliation(s)
- Deepak Ojha
- Dynamics of Condensed Matter and Center for Sustainable Systems Design, Chair of Theoretical Chemistry, Department of Chemistry, Paderborn University, Warburger Str. 100, 33098 Paderborn, Germany;
| | - Thomas D. Kühne
- Dynamics of Condensed Matter and Center for Sustainable Systems Design, Chair of Theoretical Chemistry, Department of Chemistry, Paderborn University, Warburger Str. 100, 33098 Paderborn, Germany;
- Paderborn Center for Parallel Computing and Institute for Lightweight Design, Paderborn University, Warburger Str. 100, D-33098 Paderborn, Germany
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41
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Martins-Costa MTC, Ruiz-López MF. Vibrational Sum-Frequency Generation Spectroscopy in the Energy Representation from Dual-Level Molecular Dynamics Simulations. J Phys Chem A 2020; 124:5675-5683. [DOI: 10.1021/acs.jpca.0c02901] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Marilia T. C. Martins-Costa
- Laboratoire de Physique et Chimie Théoriques, UMR CNRS 7019, University of Lorraine, CNRS, BP 70239, 54506 Vandoeuvre-lès-Nancy, France
| | - Manuel F. Ruiz-López
- Laboratoire de Physique et Chimie Théoriques, UMR CNRS 7019, University of Lorraine, CNRS, BP 70239, 54506 Vandoeuvre-lès-Nancy, France
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42
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Seki T, Yu CC, Yu X, Ohto T, Sun S, Meister K, Backus EHG, Bonn M, Nagata Y. Decoding the molecular water structure at complex interfaces through surface-specific spectroscopy of the water bending mode. Phys Chem Chem Phys 2020; 22:10934-10940. [PMID: 32373844 DOI: 10.1039/d0cp01269f] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
The structure of interfacial water determines atmospheric chemistry, wetting properties of materials, and protein folding. The challenge of investigating the properties of specific interfacial water molecules has frequently been confronted using surface-specific sum-frequency generation (SFG) vibrational spectroscopy using the O-H stretch mode. While perfectly suited for the water-air interface, for complex interfaces, a potential complication arises from the contribution of hydroxyl or amine groups of non-water species present at the surface, such as surface hydroxyls on minerals, or O-H and N-H groups contained in proteins. Here, we present a protocol to extract the hydrogen bond strength selectively of interfacial water, through the water bending mode. The bending mode vibrational frequency distribution provides a new avenue for unveiling the hydrogen bonding structure of interfacial water at complex aqueous interfaces. We demonstrate this method for the water-CaF2 and water-protein interfaces. For the former, we show that this method can indeed single out water O-H groups from surface hydroxyls, and that with increasing pH, the hydrogen-bonded network of interfacial water strengthens. Furthermore, we unveil enhanced hydrogen bonding of water, compared to bulk water, at the interface with human serum albumin proteins, a prototypical bio-interface.
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Affiliation(s)
- Takakazu Seki
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany.
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43
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Tang F, Ohto T, Sun S, Rouxel JR, Imoto S, Backus EHG, Mukamel S, Bonn M, Nagata Y. Molecular Structure and Modeling of Water-Air and Ice-Air Interfaces Monitored by Sum-Frequency Generation. Chem Rev 2020; 120:3633-3667. [PMID: 32141737 PMCID: PMC7181271 DOI: 10.1021/acs.chemrev.9b00512] [Citation(s) in RCA: 83] [Impact Index Per Article: 16.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2019] [Indexed: 12/26/2022]
Abstract
From a glass of water to glaciers in Antarctica, water-air and ice-air interfaces are abundant on Earth. Molecular-level structure and dynamics at these interfaces are key for understanding many chemical/physical/atmospheric processes including the slipperiness of ice surfaces, the surface tension of water, and evaporation/sublimation of water. Sum-frequency generation (SFG) spectroscopy is a powerful tool to probe the molecular-level structure of these interfaces because SFG can specifically probe the topmost interfacial water molecules separately from the bulk and is sensitive to molecular conformation. Nevertheless, experimental SFG has several limitations. For example, SFG cannot provide information on the depth of the interface and how the orientation of the molecules varies with distance from the surface. By combining the SFG spectroscopy with simulation techniques, one can directly compare the experimental data with the simulated SFG spectra, allowing us to unveil the molecular-level structure of water-air and ice-air interfaces. Here, we present an overview of the different simulation protocols available for SFG spectra calculations. We systematically compare the SFG spectra computed with different approaches, revealing the advantages and disadvantages of the different methods. Furthermore, we account for the findings through combined SFG experiments and simulations and provide future challenges for SFG experiments and simulations at different aqueous interfaces.
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Affiliation(s)
- Fujie Tang
- Max
Planck Institute for Polymer Research, Ackermannweg 10, Mainz 55128, Germany
- Department
of Physics, Temple University, Philadelphia, Pennsylvania 19122, United States
| | - Tatsuhiko Ohto
- Graduate
School of Engineering Science, Osaka University, 1-3 Machikaneyama, Toyonaka, Osaka 560-8531, Japan
| | - Shumei Sun
- Max
Planck Institute for Polymer Research, Ackermannweg 10, Mainz 55128, Germany
- Department
of Physical Chemistry, University of Vienna, Währinger Strasse 42, 1090 Vienna, Austria
| | - Jérémy R. Rouxel
- Department
of Chemistry and Department of Physics and Astronomy, University of California, Irvine, Irvine, California 92697-2025, United States
| | - Sho Imoto
- Max
Planck Institute for Polymer Research, Ackermannweg 10, Mainz 55128, Germany
| | - Ellen H. G. Backus
- Max
Planck Institute for Polymer Research, Ackermannweg 10, Mainz 55128, Germany
- Department
of Physical Chemistry, University of Vienna, Währinger Strasse 42, 1090 Vienna, Austria
| | - Shaul Mukamel
- Department
of Chemistry and Department of Physics and Astronomy, University of California, Irvine, Irvine, California 92697-2025, United States
| | - Mischa Bonn
- Max
Planck Institute for Polymer Research, Ackermannweg 10, Mainz 55128, Germany
| | - Yuki Nagata
- Max
Planck Institute for Polymer Research, Ackermannweg 10, Mainz 55128, Germany
- Department
of Physics, State Key Laboratory of Surface Physics and Key Laboratory
of Micro- and Nano-Photonic Structures (MOE), Fudan University, Shanghai 200433, China
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44
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Ishiyama T. Existence of weakly interacting OH bond at air/water interface. J Chem Phys 2020; 152:134703. [DOI: 10.1063/1.5144308] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022] Open
Affiliation(s)
- Tatsuya Ishiyama
- Department of Applied Chemistry, Graduate School of Science and Engineering, University of Toyama, Toyama 930-8555, Japan
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45
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Okuno M, Yamada S, Ohto T, Tada H, Nakanishi W, Ariga K, Ishibashi TA. Hydrogen Bonds and Molecular Orientations of Supramolecular Structure between Barbituric Acid and Melamine Derivative at the Air/Water Interface Revealed by Heterodyne-Detected Vibrational Sum Frequency Generation Spectroscopy. J Phys Chem Lett 2020; 11:2422-2429. [PMID: 32163290 DOI: 10.1021/acs.jpclett.0c00329] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
We studied the supramolecular structure between barbituric acid (pyrimidine-2,4,6(1H,3H,5H)-trione, BA) and an amphiphilic melamine derivative at the air/water interface by heterodyne-detected vibrational sum frequency generation (HD-VSFG) spectroscopy. HD-VSFG measurements in situ showed a positive broad band from 2300 to 2950 cm-1. By comparing the experimental results with ab initio molecular dynamics (AIMD) simulations, we assigned the broad band to the NH stretching modes of BA strongly hydrogen-bonded to the melamine derivative. In addition, we report in situ HD-VSFG spectra of the interfacial supramolecular structure in the CO stretching region. Two CO stretching bands were identified. On the basis of the signs of the C=O bands, we uniquely determined the orientation of BA. The strong hydrogen bonds and the molecular orientations are direct evidence for the supramolecular structure based on complementary hydrogen bonds at the air/water interface.
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Affiliation(s)
- Masanari Okuno
- Department of Chemistry, Graduate School of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571 Japan
| | - Shuhei Yamada
- Department of Chemistry, Graduate School of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571 Japan
| | - Tatsuhiko Ohto
- Graduate School of Engineering Science, Osaka University, 1-3 Machikaneyama, Toyonaka, Osaka 560-8531, Japan
| | - Hirokazu Tada
- Graduate School of Engineering Science, Osaka University, 1-3 Machikaneyama, Toyonaka, Osaka 560-8531, Japan
| | - Waka Nakanishi
- World Premier International (WPI) International Center for Materials Nanoarchitectonics (MANA), National Institute for Materials Science (NIMS), 1-1 Namiki, Tsukuba, Ibaraki 305-0044, Japan
| | - Katsuhiko Ariga
- World Premier International (WPI) International Center for Materials Nanoarchitectonics (MANA), National Institute for Materials Science (NIMS), 1-1 Namiki, Tsukuba, Ibaraki 305-0044, Japan
- Department of Advanced Materials Science, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8561, Japan
| | - Taka-Aki Ishibashi
- Department of Chemistry, Graduate School of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571 Japan
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46
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Niu K, Marcus RA. Sum frequency generation, calculation of absolute intensities, comparison with experiments, and two-field relaxation-based derivation. Proc Natl Acad Sci U S A 2020; 117:2805-2814. [PMID: 31996478 PMCID: PMC7022212 DOI: 10.1073/pnas.1906243117] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
Abstract
The experimental sum frequency generation (SFG) spectrum is the response to an infrared pulse and a visible pulse and is a highly surface-sensitive technique. We treat the surface dangling OH bonds at the air/water interface and focus on the absolute SFG intensities for the resonant terms, a focus that permits insight into the consequences of some approximations. For the polarization combinations, the calculated linewidths for the water interface dangling OH SFG band at 3,700 [Formula: see text] are, as usual, too large, because of the customary neglect of motional narrowing. The integrated spectrum is used to circumvent this problem and justified here using a Kubo-like formalism and theoretical integrated band intensities rather than peak intensities. Only relative SFG intensities are usually reported. The absolute integrated SFG intensities for three polarization combinations for sum frequency, visible, and infrared beams are computed. We use molecular dynamics and the dipole and the polarizability matrix elements obtained from infrared and Raman studies of [Formula: see text]O vapor. The theoretical expressions for two of the absolute susceptibilities contain only a single term and agree with experiment to about a factor of 1.3, with no adjustable parameters. The Fresnel factors are included in that comparison. One of the susceptibilities contains instead four positive and negative terms and agrees less well. The expression for the SFG correlation function is normally derived from a statistical mechanical formulation using a time-evolving density matrix. We show how a derivation based on a two-field relaxation leads to the same final result.
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Affiliation(s)
- Kai Niu
- School of Science, Tianjin University of Technology and Education, Hexi, Tianjin 300222, People's Republic of China
- Noyes Laboratory of Chemical Physics, California Institute of Technology, Pasadena, CA 91125
| | - Rudolph A Marcus
- Noyes Laboratory of Chemical Physics, California Institute of Technology, Pasadena, CA 91125
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Zhong K, Yu CC, Dodia M, Bonn M, Nagata Y, Ohto T. Vibrational mode frequency correction of liquid water in density functional theory molecular dynamics simulations with van der Waals correction. Phys Chem Chem Phys 2020; 22:12785-12793. [DOI: 10.1039/c9cp06335h] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
We develop a frequency correction scheme for the stretch and bending modes of liquid water, which substantially improves the prediction of the vibrational spectra.
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Affiliation(s)
- Kai Zhong
- Hefei National Laboratory for Physical Sciences at the Microscale
- Collaborative Innovation Center of Chemistry for Energy Materials
- CAS Center for Excellence in Nanoscience
- School of Chemistry and Materials Science
- University of Science and Technology of China
| | - Chun-Chieh Yu
- Max Planck Institute for Polymer Research
- Ackermannweg 10
- 55128 Mainz
- Germany
| | - Mayank Dodia
- Max Planck Institute for Polymer Research
- Ackermannweg 10
- 55128 Mainz
- Germany
| | - Mischa Bonn
- Max Planck Institute for Polymer Research
- Ackermannweg 10
- 55128 Mainz
- Germany
| | - Yuki Nagata
- Max Planck Institute for Polymer Research
- Ackermannweg 10
- 55128 Mainz
- Germany
| | - Tatsuhiko Ohto
- Graduate School of Engineering Science
- Osaka University
- Osaka 560-8531
- Japan
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48
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Sun S, Schaefer J, Backus EHG, Bonn M. How surface-specific is 2nd-order non-linear spectroscopy? J Chem Phys 2019; 151:230901. [PMID: 31864247 DOI: 10.1063/1.5129108] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Abstract
Surfaces and interfaces play important roles in many processes and reactions and are therefore intensively studied, often with the aim of obtaining molecular-level information from just the interfacial layer. Generally, only the first few molecular layers next to the interface are relevant for the surface processes. In the past decades, 2nd-order nonlinear spectroscopies including sum-frequency generation and second harmonic generation have developed into powerful tools for obtaining molecularly specific insights into the interfacial region. These approaches have contributed substantially to our understanding of a wide range of physical phenomena. However, along with their wide-ranging applications, it has been realized that the implied surface-specificity of these approaches may not always be warranted. Specifically, the bulk quadrupole contribution beyond the electric dipole-approximation for a system with a weak nonlinear interface signal, as well as the diffuse layer contribution at charged interfaces, could mask the surface information. In this perspective paper, we discuss the surface-specificity of 2nd-order nonlinear spectroscopy, especially considering these two contributions.
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Affiliation(s)
- Shumei Sun
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Jan Schaefer
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Ellen H G Backus
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Mischa Bonn
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
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49
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Pezzotti S, Galimberti DR, Gaigeot MP. Deconvolution of BIL-SFG and DL-SFG spectroscopic signals reveals order/disorder of water at the elusive aqueous silica interface. Phys Chem Chem Phys 2019; 21:22188-22202. [PMID: 31441490 DOI: 10.1039/c9cp02766a] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
Through the prism of the rather controversial and elusive silica/water interface, ab initio DFT-based molecular dynamics simulations of the structure and non-linear SFG spectroscopy of the interface are analysed. Following our recent work [Phys. Chem. Chem. Phys., 2018, 20, 5190-5199], we show that once the interfacial water is decomposed into BIL (Binding Interfacial Layer) and DL (Diffuse Layer) interfacial regions, the SFG signals can be deconvolved and unambiguously interpreted, and a global microscopic understanding on silica/water interfaces can be obtained. By comparing crystalline quartz/water and amorphous (fused) silica/water interfaces, the dependence of interfacial structural and spectroscopic properties on the degree of surface crystallinity is established, while by adding KCl electrolytes at the quartz/water interface, the chaotropic effect of ions on the interfacial molecular arrangement is unveiled. The evolution of structure and SFG spectra of silica/water interfaces with respect to increasing surface deprotonation, i.e., with respect to pH conditions, is also evaluated. Spectroscopic BIL-SFG markers that experimentally allow one detect the water order/disorder in the BIL as a function of surface hydroxylation and ion concentration are revealed, while the pH-induced modulations in the experimentally recorded SFG spectra are rationalized in terms of changes in both BIL and DL SFG signatures.
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Affiliation(s)
- Simone Pezzotti
- LAMBE CNRS UMR8587, Laboratoire Analyse et Modélisation pour la Biologie et l'Environnement, Université d'Evry val d'Essonne, Blvd F. Mitterrand, Bat Maupertuis, 91025 Evry, France.
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50
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Ojha D, Kaliannan NK, Kühne TD. Time-dependent vibrational sum-frequency generation spectroscopy of the air-water interface. Commun Chem 2019. [DOI: 10.1038/s42004-019-0220-6] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023] Open
Abstract
Abstract
Vibrational sum-frequency generation spectroscopy is a powerful method to study the microscopic structure and dynamics of interfacial systems. Here we demonstrate a simple computational approach to calculate the time-dependent, frequency-resolved vibrational sum-frequency generation spectrum (TD-vSFG) of the air-water interface. Using this approach, we show that at the air-water interface, the transition of water molecules with bonded OH modes to free OH modes occurs at a time scale of $$\sim$$
~
3 ps, whereas water molecules with free OH modes rapidly make a transition to a hydrogen-bonded state within $$\sim$$
~
2 ps. Furthermore, we also elucidate the origin of the observed differential dynamics based on the time-dependent evolution of water molecules in the different local solvent environments.
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