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van Ewijk C, Xu F, Maity S, Sheng J, Stuart MCA, Feringa BL, Roos WH. Light-Triggered Disassembly of Molecular Motor-based Supramolecular Polymers Revealed by High-Speed AFM. Angew Chem Int Ed Engl 2024; 63:e202319387. [PMID: 38372499 DOI: 10.1002/anie.202319387] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2023] [Revised: 02/02/2024] [Accepted: 02/14/2024] [Indexed: 02/20/2024]
Abstract
Photoresponsive supramolecular polymers have a major potential for applications in responsive materials that are externally triggered by light with spatio-temporal control of their polymerisation state. While changes in macroscopic properties revealed the adaptive nature of these materials, it remains challenging to capture the dynamic depolymerisation process at the molecular level, which requires fast observation techniques combined with in situ irradiation. By implementing in situ UV illumination into a High-Speed Atomic Force Microscope (HS-AFM) setup, we have been able to capture the disassembly of a light-driven molecular motor-based supramolecular polymer. The real-time visualisation of the light-triggered disassembly process not only reveals cooperative depolymerisation, it also shows that this process continues after illumination is halted. Combining the data with cryo-electron microscopy and spectroscopy approaches, we obtain a molecular-level description of the motor-based polymer dynamics reminiscent of actin chain-end depolymerisation. Our detailed understanding of supramolecular depolymerisation will drive the development of future responsive polymer systems.
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Affiliation(s)
- Chris van Ewijk
- Molecular Biophysics, Zernike Institute for Advanced Materials Rijksuniversiteit Groningen, Nijenborgh 4, 9747 AG, Groningen, The, Netherlands
| | - Fan Xu
- Synthetic Organic Chemistry, Stratingh Institute for Chemistry Rijksuniversiteit Groningen, Nijenborgh 4, 9747 AG, Groningen, The, Netherlands
| | - Sourav Maity
- Molecular Biophysics, Zernike Institute for Advanced Materials Rijksuniversiteit Groningen, Nijenborgh 4, 9747 AG, Groningen, The, Netherlands
| | - Jinyu Sheng
- Synthetic Organic Chemistry, Stratingh Institute for Chemistry Rijksuniversiteit Groningen, Nijenborgh 4, 9747 AG, Groningen, The, Netherlands
| | - Marc C A Stuart
- Synthetic Organic Chemistry, Stratingh Institute for Chemistry Rijksuniversiteit Groningen, Nijenborgh 4, 9747 AG, Groningen, The, Netherlands
| | - Ben L Feringa
- Synthetic Organic Chemistry, Stratingh Institute for Chemistry Rijksuniversiteit Groningen, Nijenborgh 4, 9747 AG, Groningen, The, Netherlands
| | - Wouter H Roos
- Molecular Biophysics, Zernike Institute for Advanced Materials Rijksuniversiteit Groningen, Nijenborgh 4, 9747 AG, Groningen, The, Netherlands
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Frohoff-Hülsmann T, Thiele U. Nonreciprocal Cahn-Hilliard Model Emerges as a Universal Amplitude Equation. PHYSICAL REVIEW LETTERS 2023; 131:107201. [PMID: 37739387 DOI: 10.1103/physrevlett.131.107201] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/29/2022] [Accepted: 08/08/2023] [Indexed: 09/24/2023]
Abstract
Oscillatory behavior is ubiquitous in out-of-equilibrium systems showing spatiotemporal pattern formation. Starting from a linear large-scale oscillatory instability-a conserved-Hopf instability-that naturally occurs in many active systems with two conservation laws, we derive a corresponding amplitude equation. It belongs to a hierarchy of such universal equations for the eight types of instabilities in homogeneous isotropic systems resulting from the combination of three features: large-scale vs small-scale instability, stationary vs oscillatory instability, and instability without and with conservation law(s). The derived universal equation generalizes a phenomenological model of considerable recent interest, namely, the nonreciprocal Cahn-Hilliard model, and may be of a similar relevance for the classification of pattern forming systems as the complex Ginzburg-Landau equation.
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Affiliation(s)
- Tobias Frohoff-Hülsmann
- Institute of Theoretical Physics, University of Münster, Wilhelm-Klemm-Strasse 9, 48149 Münster, Germany
| | - Uwe Thiele
- Institute of Theoretical Physics, University of Münster, Wilhelm-Klemm-Strasse 9, 48149 Münster, Germany
- Center for Nonlinear Science (CeNoS), University of Münster, Corrensstrasse 2, 48149 Münster, Germany
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Gu S, Bull A, Perry JK, Huang A, Hourwitz MJ, Abostate M, Fourkas JT, Korchevskiy AA, Wylie AG, Losert W. Excitable systems: A new perspective on the cellular impact of elongate mineral particles. ENVIRONMENTAL RESEARCH 2023; 230:115353. [PMID: 36702187 DOI: 10.1016/j.envres.2023.115353] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2022] [Accepted: 01/22/2023] [Indexed: 05/30/2023]
Abstract
We investigate how the geometry of elongate mineral particles (EMPs) in contact with cells influences esotaxis, a recently discovered mechanism of texture sensing. Esotaxis is based on cytoskeletal waves and oscillations that are nucleated, shaped, and steered by the texture of the surroundings. We find that all EMPs studied trigger an esotactic response in macrophages, and that this response dominates cytoskeletal activity in these immune cells. In contrast, epithelial cells show little to no esotactic response to the EMPs. These results are consistent with the distinct interactions of both cell types with ridged nanotopographies of dimensions comparable to those of asbestiform EMPs. Our findings raise the question of whether narrow, asbestiform EMPs may also dominate cytoskeletal activity in other types of immune cells that exhibit similar esotactic effects. These findings, together with prior studies of esotaxis, lead us to the hypothesis that asbestiform EMPs suppress the migration of immune cells and activate immune signaling, thereby outcompeting signals that would normally stimulate the immune system in nearby tissue.
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Affiliation(s)
- Shuyao Gu
- Department of Physics, University of Maryland, College Park, MD 20740, United States
| | - Abby Bull
- Department of Physics, University of Maryland, College Park, MD 20740, United States; Institute for Physical Science and Technology, University of Maryland, College Park, MD 20740, United States
| | - Jeneh K Perry
- CCDC Army Research Laboratory, Weapons and Material Research Directorate, 6300 Rodman Road, Aberdeen, Proving Ground, MD 21005, United States
| | - Amilee Huang
- Department of Biology, University of Maryland, College Park, MD 20740, United States
| | - Matt J Hourwitz
- Department of Chemistry and Biochemistry, University of Maryland, College Park, MD 20740, United States
| | - Mona Abostate
- Department of Chemistry and Biochemistry, University of Maryland, College Park, MD 20740, United States
| | - John T Fourkas
- Institute for Physical Science and Technology, University of Maryland, College Park, MD 20740, United States; Department of Chemistry and Biochemistry, University of Maryland, College Park, MD 20740, United States
| | - Andrey A Korchevskiy
- Chemistry & Industrial Hygiene, Inc., 5420 Ward Road, Suite 100, Arvada, CO 80002, United States
| | - Ann G Wylie
- Laboratory for Mineral Deposits Research, Department of Geology, University of Maryland, 8000 Regents Dr., College Park, MD 20742, United States
| | - Wolfgang Losert
- Department of Physics, University of Maryland, College Park, MD 20740, United States; Institute for Physical Science and Technology, University of Maryland, College Park, MD 20740, United States.
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Biomolecular condensation involving the cytoskeleton. Brain Res Bull 2023; 194:105-117. [PMID: 36690162 DOI: 10.1016/j.brainresbull.2023.01.009] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2022] [Revised: 01/07/2023] [Accepted: 01/19/2023] [Indexed: 01/22/2023]
Abstract
Biomolecular condensation of proteins contributes to the organization of the cytoplasm and nucleoplasm. A number of condensation processes appear to be directly involved in regulating the structure, function and dynamics of the cytoskeleton. Liquid-liquid phase separation of cytoskeleton proteins, together with polymerization modulators, promotes cytoskeletal fiber nucleation and branching. Furthermore, the attachment of protein condensates to the cytoskeleton can contribute to cytoskeleton stability and organization, regulate transport, create patterns of functional reaction containers, and connect the cytoskeleton with membranes. Surface-bound condensates can exert and buffer mechanical forces that give stability and flexibility to the cytoskeleton, thus, may play a large role in cell biology. In this review, we introduce the concept and role of cellular biomolecular condensation, explain its special function on cytoskeletal fiber surfaces, and point out potential definition and experimental caveats. We review the current literature on protein condensation processes related to the actin, tubulin, and intermediate filament cytoskeleton, and discuss some of them in the context of neurobiology. In summary, we provide an overview about biomolecular condensation in relation to cytoskeleton structure and function, which offers a base for the exploration and interpretation of cytoskeletal condensates in neurobiology.
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Miyazaki K, Schweizer KS, Thirumalai D, Tuinier R, Zaccarelli E. The Asakura–Oosawa theory: Entropic forces in physics, biology, and soft matter. J Chem Phys 2022; 156:080401. [DOI: 10.1063/5.0085965] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- K. Miyazaki
- Department of Physics, Nagoya University, Nagoya 464-8602, Japan
| | - K. S. Schweizer
- Department of Chemistry, University of Illinois, Urbana, Illinois 61801, USA
- Materials Research Laboratory, University of Illinois, Urbana, Illinois 61801, USA
- Department of Materials Science, University of Illinois, Urbana, Illinois 61801, USA
| | - D. Thirumalai
- Department of Chemistry, University of Texas at Austin, Austin, Texas 78712, USA
| | - R. Tuinier
- Laboratory of Physical Chemistry, Department of Chemical Engineering and Chemistry, Eindhoven University of Technology, P.O. Box 513, 5600 MB Eindhoven, The Netherlands
- Institute for Complex Molecular Systems, Eindhoven University of Technology, P.O. Box 513, 5600 MB Eindhoven, The Netherlands
| | - E. Zaccarelli
- CNR-ISC (National Research Council–Institute for Complex Systems) and Department of Physics, Sapienza University of Rome, Rome, Italy
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