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Tebele SM, Marks RA, Farrant JM. Two Decades of Desiccation Biology: A Systematic Review of the Best Studied Angiosperm Resurrection Plants. PLANTS (BASEL, SWITZERLAND) 2021; 10:plants10122784. [PMID: 34961255 PMCID: PMC8706221 DOI: 10.3390/plants10122784] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2021] [Revised: 12/06/2021] [Accepted: 12/06/2021] [Indexed: 05/25/2023]
Abstract
Resurrection plants have an extraordinary ability to survive extreme water loss but still revive full metabolic activity when rehydrated. These plants are useful models to understand the complex biology of vegetative desiccation tolerance. Despite extensive studies of resurrection plants, many details underlying the mechanisms of desiccation tolerance remain unexplored. To summarize the progress in resurrection plant research and identify unexplored questions, we conducted a systematic review of 15 model angiosperm resurrection plants. This systematic review provides an overview of publication trends on resurrection plants, the geographical distribution of species and studies, and the methodology used. Using the Preferred Reporting Items for Systematic reviews and Meta-Analyses protocol we surveyed all publications on resurrection plants from 2000 and 2020. This yielded 185 empirical articles that matched our selection criteria. The most investigated plants were Craterostigma plantagineum (17.5%), Haberlea rhodopensis (13.7%), Xerophyta viscosa (reclassified as X. schlechteri) (11.9%), Myrothamnus flabellifolia (8.5%), and Boea hygrometrica (8.1%), with all other species accounting for less than 8% of publications. The majority of studies have been conducted in South Africa, Bulgaria, Germany, and China, but there are contributions from across the globe. Most studies were led by researchers working within the native range of the focal species, but some international and collaborative studies were also identified. The number of annual publications fluctuated, with a large but temporary increase in 2008. Many studies have employed physiological and transcriptomic methodologies to investigate the leaves of resurrection plants, but there was a paucity of studies on roots and only one metagenomic study was recovered. Based on these findings we suggest that future research focuses on resurrection plant roots and microbiome interactions to explore microbial communities associated with these plants, and their role in vegetative desiccation tolerance.
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Affiliation(s)
- Shandry M. Tebele
- Department of Molecular and Cell Biology, University of Cape Town, Rondebosch, Cape Town 7701, South Africa; (S.M.T.); (R.A.M.)
| | - Rose A. Marks
- Department of Molecular and Cell Biology, University of Cape Town, Rondebosch, Cape Town 7701, South Africa; (S.M.T.); (R.A.M.)
- Department of Horticulture, Michigan State University, East Lansing, MI 48824, USA
- Plant Resiliency Institute, Michigan State University, East Lansing, MI 48824, USA
| | - Jill M. Farrant
- Department of Molecular and Cell Biology, University of Cape Town, Rondebosch, Cape Town 7701, South Africa; (S.M.T.); (R.A.M.)
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Yobi A, Batushansky A, Oliver MJ, Angelovici R. Adaptive responses of amino acid metabolism to the combination of desiccation and low nitrogen availability in Sporobolus stapfianus. PLANTA 2019; 249:1535-1549. [PMID: 30725176 DOI: 10.1007/s00425-019-03105-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/20/2018] [Accepted: 01/30/2019] [Indexed: 06/09/2023]
Abstract
Depending on nitrogen availability, S. stapfianus uses different amino acid metabolism strategies to cope with desiccation stress. The different metabolic strategies support essential processes for the desiccation tolerance phenotype. To provide a comprehensive assessment of the role played by amino acids in the adaptation of Sporobolus stapfianus to a combination of desiccation and nitrogen limitation, we used an absolute quantification of free and protein-bound amino acids (FAAs and PBAAs) as well as their gamma-glutamyl (gg-AA) derivatives in four different tissues grown under high- and low-nitrogen regimes. We demonstrate that although specific FAAs and gg-AAs increased in desiccating immature leaves under both nitrogen regimes, the absolute change in the total amount of either is small or negligible, negating their proposed role in nitrogen storage. FAAs and PBAAs decrease in underground tissues during desiccation, when nitrogen is abundant. In contrast, PBAAs are drastically reduced from the mature leaves, when nitrogen is limiting. Nevertheless, the substantial reduction in PBAA and FAA fractions in both treatments is not manifested in the immature leaves, which strongly suggests that these amino acids are further metabolized to fuel central metabolism or other metabolic adjustments that are essential for the acquisition of desiccation tolerance (DT).
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Affiliation(s)
- Abou Yobi
- Division of Biological Sciences, Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO, 65311, USA
| | - Albert Batushansky
- Division of Biological Sciences, Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO, 65311, USA
- Aging and Metabolism Program, Oklahoma Medical Research Foundation, Oklahoma City, OK, 73104, USA
| | - Melvin J Oliver
- U.S. Department of Agriculture-Agricultural Research Service, Plant Genetic Research Unit, University of Missouri, Columbia, MO, 65211, USA
| | - Ruthie Angelovici
- Division of Biological Sciences, Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO, 65311, USA.
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Plant Desiccation Tolerance and its Regulation in the Foliage of Resurrection “Flowering-Plant” Species. AGRONOMY-BASEL 2018. [DOI: 10.3390/agronomy8080146] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
The majority of flowering-plant species can survive complete air-dryness in their seed and/or pollen. Relatively few species (‘resurrection plants’) express this desiccation tolerance in their foliage. Knowledge of the regulation of desiccation tolerance in resurrection plant foliage is reviewed. Elucidation of the regulatory mechanism in resurrection grasses may lead to identification of genes that can improve stress tolerance and yield of major crop species. Well-hydrated leaves of resurrection plants are desiccation-sensitive and the leaves become desiccation tolerant as they are drying. Such drought-induction of desiccation tolerance involves changes in gene-expression causing extensive changes in the complement of proteins and the transition to a highly-stable quiescent state lasting months to years. These changes in gene-expression are regulated by several interacting phytohormones, of which drought-induced abscisic acid (ABA) is particularly important in some species. Treatment with only ABA induces desiccation tolerance in vegetative tissue of Borya constricta Churchill. and Craterostigma plantagineum Hochstetter. but not in the resurrection grass Sporobolus stapfianus Gandoger. Suppression of drought-induced senescence is also important for survival of drying. Further research is needed on the triggering of the induction of desiccation tolerance, on the transition between phases of protein synthesis and on the role of the phytohormone, strigolactone and other potential xylem-messengers during drying and rehydration.
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Neeragunda Shivaraj Y, Barbara P, Gugi B, Vicré-Gibouin M, Driouich A, Ramasandra Govind S, Devaraja A, Kambalagere Y. Perspectives on Structural, Physiological, Cellular, and Molecular Responses to Desiccation in Resurrection Plants. SCIENTIFICA 2018; 2018:9464592. [PMID: 30046509 PMCID: PMC6036803 DOI: 10.1155/2018/9464592] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/24/2017] [Revised: 03/07/2018] [Accepted: 04/26/2018] [Indexed: 05/21/2023]
Abstract
Resurrection plants possess a unique ability to counteract desiccation stress. Desiccation tolerance (DT) is a very complex multigenic and multifactorial process comprising a combination of physiological, morphological, cellular, genomic, transcriptomic, proteomic, and metabolic processes. Modification in the sugar composition of the hemicellulosic fraction of the cell wall is detected during dehydration. An important change is a decrease of glucose in the hemicellulosic fraction during dehydration that can reflect a modification of the xyloglucan structure. The expansins might also be involved in cell wall flexibility during drying and disrupt hydrogen bonds between polymers during rehydration of the cell wall. Cleavages by xyloglucan-modifying enzymes release the tightly bound xyloglucan-cellulose network, thus increasing cell wall flexibility required for cell wall folding upon desiccation. Changes in hydroxyproline-rich glycoproteins (HRGPs) such as arabinogalactan proteins (AGPs) are also observed during desiccation and rehydration processes. It has also been observed that significant alterations in the process of photosynthesis and photosystem (PS) II activity along with changes in the antioxidant enzyme system also increased the cell wall and membrane fluidity resulting in DT. Similarly, recent data show a major role of ABA, LEA proteins, and small regulatory RNA in regulating DT responses. Current progress in "-omic" technologies has enabled quantitative monitoring of the plethora of biological molecules in a high throughput routine, making it possible to compare their levels between desiccation-sensitive and DT species. In this review, we present a comprehensive overview of structural, physiological, cellular, molecular, and global responses involved in desiccation tolerance.
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Affiliation(s)
- Yathisha Neeragunda Shivaraj
- Centre for Bioinformation, Department of Studies and Research in Environmental Science, Tumkur University, Tumakuru 57210, India
| | - Plancot Barbara
- Laboratoire de Glycobiologie et Matrice Extracellulaire Végétale, Normandie Univ, UniRouen, 76000 Rouen, France
- Fédération de Recherche “Normandie-Végétal”-FED 4277, 76000 Rouen, France
| | - Bruno Gugi
- Laboratoire de Glycobiologie et Matrice Extracellulaire Végétale, Normandie Univ, UniRouen, 76000 Rouen, France
- Fédération de Recherche “Normandie-Végétal”-FED 4277, 76000 Rouen, France
| | - Maïté Vicré-Gibouin
- Laboratoire de Glycobiologie et Matrice Extracellulaire Végétale, Normandie Univ, UniRouen, 76000 Rouen, France
- Fédération de Recherche “Normandie-Végétal”-FED 4277, 76000 Rouen, France
| | - Azeddine Driouich
- Laboratoire de Glycobiologie et Matrice Extracellulaire Végétale, Normandie Univ, UniRouen, 76000 Rouen, France
- Fédération de Recherche “Normandie-Végétal”-FED 4277, 76000 Rouen, France
| | - Sharatchandra Ramasandra Govind
- Centre for Bioinformation, Department of Studies and Research in Environmental Science, Tumkur University, Tumakuru 57210, India
| | - Akash Devaraja
- Centre for Bioinformation, Department of Studies and Research in Environmental Science, Tumkur University, Tumakuru 57210, India
| | - Yogendra Kambalagere
- Department of Studies and Research in Environmental Science, Kuvempu University, Shankaraghatta, Shimoga 577451, India
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Zhang Q, Bartels D. Molecular responses to dehydration and desiccation in desiccation-tolerant angiosperm plants. JOURNAL OF EXPERIMENTAL BOTANY 2018; 69:3211-3222. [PMID: 29385548 DOI: 10.1093/jxb/erx489] [Citation(s) in RCA: 47] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/13/2017] [Accepted: 12/20/2017] [Indexed: 05/21/2023]
Abstract
Due to the ability to tolerate extreme dehydration, desiccation-tolerant plants have been widely investigated to find potential approaches for improving water use efficiency or developing new crop varieties. The studies of desiccation-tolerant plants have identified sugar accumulation, specific protein synthesis, cell structure changes, and increased anti-oxidative reactions as part of the mechanisms of desiccation tolerance. However, plants respond differently according to the severity of water loss, and the process of water loss affects desiccation tolerance. A detailed analysis within the dehydration process is important for understanding the process of desiccation tolerance. This review defines dehydration and desiccation, finds the boundary for the relative water content between dehydration and desiccation, compares the molecular responses to dehydration and desiccation, compares signaling differences between dehydration and desiccation, and finally summarizes the strategies launched in desiccation-tolerant plants for dehydration and desiccation, respectively. The roles of abscisic acid (ABA) and reactive oxygen species (ROS) in sensing and signaling during dehydration are discussed. We outline how this knowledge can be exploited to generate drought-tolerant crop plants.
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Affiliation(s)
- Qingwei Zhang
- Institute of Molecular Physiology and Biotechnology of Plants (IMBIO), University of Bonn, Germany
| | - Dorothea Bartels
- Institute of Molecular Physiology and Biotechnology of Plants (IMBIO), University of Bonn, Germany
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Wang Y, Liu K, Bi D, Zhou S, Shao J. Characterization of the transcriptome and EST-SSR development in Boea clarkeana, a desiccation-tolerant plant endemic to China. PeerJ 2017; 5:e3422. [PMID: 28630801 PMCID: PMC5474092 DOI: 10.7717/peerj.3422] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2017] [Accepted: 05/16/2017] [Indexed: 11/26/2022] Open
Abstract
BACKGROUND Desiccation-tolerant (DT) plants can recover full metabolic competence upon rehydration after losing most of their cellular water (>95%) for extended periods of time. Functional genomic approaches such as transcriptome sequencing can help us understand how DT plants survive and respond to dehydration, which has great significance for plant biology and improving the drought tolerance of crops. Boea clarkeana Hemsl. (Gesneriaceae) is a DT dicotyledonous herb. Its genomic sequences characteristics remain unknown. Based on transcriptomic analyses, polymorphic EST-SSR (simple sequence repeats in expressed sequence tags) molecular primers can be designed, which will greatly facilitate further investigations of the population genetics and demographic histories of DT plants. METHODS In the present study, we used the platform Illumina HiSeq™2000 and de novo assembly technology to obtain leaf transcriptomes of B. clarkeana and conducted a BLASTX alignment of the sequencing data and protein databases for sequence classification and annotation. Then, based on the sequence information, the EST-SSR markers were developed, and the functional annotation of ESTs containing polymorphic SSRs were obtained through BLASTX. RESULTS A total of 91,449 unigenes were generated from the leaf cDNA library of B. clarkeana. Based on a sequence similarity search with a known protein database, 72,087 unigenes were annotated. Among the annotated unigenes, a total of 71,170 unigenes showed significant similarity to the known proteins of 463 popular model species in the Nr database, and 59,962 unigenes and 32,336 unigenes were assigned to Gene Ontology (GO) classifications and Cluster of Orthologous Groups (COG), respectively. In addition, 44,924 unigenes were mapped in 128 KEGG pathways. Furthermore, a total of 7,610 unigenes with 8,563 microsatellites were found. Seventy-four primer pairs were selected from 436 primer pairs designed for polymorphism validation. SSRs with higher polymorphism rates were concentrated on dinucleotides, pentanucleotides and hexanucleotides. Finally, 17 pairs with stable, highly polymorphic loci were selected for polymorphism screening. There was a total of 65 alleles, with 2-6 alleles at each locus. Primarily due to the unique biological characteristics of plants, the HE (0-0.196), HO (0.082-0.14) and PIC (0-0.155) per locus were very low. The functional annotation distribution centered on ESTs containing di- and tri-nucleotide SSRs, and the ESTs containing primers BC2, BC4 and BC12 were annotated to vegetative dehydration/desiccation pathways. DISCUSSION This work is the first genetic study of B. clarkeana as a new plant resource of DT genes. A substantial number of transcriptome sequences were generated in this study. These sequences are valuable resources for gene annotation and discovery as well as molecular marker development. These sequences could also provide a valuable basis for future molecular studies of B. clarkeana.
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Affiliation(s)
- Ying Wang
- College of Life Sciences, Anhui Normal University, Wuhu, Anhui, China
- Anhui Provincial Key Laboratory of the Conservation and Exploitation of Biological Resources, Anhui Normal University, Wuhu, Anhui, China
| | - Kun Liu
- College of Life Sciences, Anhui Normal University, Wuhu, Anhui, China
- Anhui Provincial Key Laboratory of the Conservation and Exploitation of Biological Resources, Anhui Normal University, Wuhu, Anhui, China
| | - De Bi
- College of Life Sciences, Anhui Normal University, Wuhu, Anhui, China
| | - Shoubiao Zhou
- College of Life Sciences, Anhui Normal University, Wuhu, Anhui, China
- College of Environmental Science and Engineering, Anhui Normal University, Wuhu, Anhui, China
| | - Jianwen Shao
- College of Life Sciences, Anhui Normal University, Wuhu, Anhui, China
- Anhui Provincial Key Laboratory of the Conservation and Exploitation of Biological Resources, Anhui Normal University, Wuhu, Anhui, China
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Yobi A, Schlauch KA, Tillett RL, Yim WC, Espinoza C, Wone BWM, Cushman JC, Oliver MJ. Sporobolus stapfianus: Insights into desiccation tolerance in the resurrection grasses from linking transcriptomics to metabolomics. BMC PLANT BIOLOGY 2017; 17:67. [PMID: 28351347 PMCID: PMC5371216 DOI: 10.1186/s12870-017-1013-7] [Citation(s) in RCA: 43] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2016] [Accepted: 03/16/2017] [Indexed: 05/23/2023]
Abstract
BACKGROUND Understanding the response of resurrection angiosperms to dehydration and rehydration is critical for deciphering the mechanisms of how plants cope with the rigors of water loss from their vegetative tissues. We have focused our studies on the C4 resurrection grass, Sporobolus stapfianus Gandoger, as a member of a group of important forage grasses. METHODS We have combined non-targeted metabolomics with transcriptomics, via a NimbleGen array platform, to develop an understanding of how gene expression and metabolite profiles can be linked to generate a more detailed mechanistic appreciation of the cellular response to both desiccation and rehydration. RESULTS The rehydration transcriptome and metabolome are primarily geared towards the rapid return of photosynthesis, energy metabolism, protein turnover, and protein synthesis during the rehydration phase. However, there are some metabolites associated with ROS protection that remain elevated during rehydration, most notably the tocopherols. The analysis of the dehydration transcriptome reveals a strong concordance between transcript abundance and the associated metabolite abundance reported earlier, but only in responses that are directly related to cellular protection during dehydration: carbohydrate metabolism and redox homeostasis. The transcriptome response also provides strong support for the involvement of cellular protection processes as exemplified by the increases in the abundance of transcripts encoding late embryogenesis abundant (LEA) proteins, anti-oxidant enzymes, early light-induced proteins (ELIP) proteins, and cell-wall modification enzymes. There is little concordance between transcript and metabolite abundance for processes such as amino acid metabolism that do not appear to contribute directly to cellular protection, but are nonetheless important for the desiccation tolerant phenotype of S. stapfianus. CONCLUSIONS The transcriptomes of both dehydration and rehydration offer insight into the complexity of the regulation of responses to these processes that involve complex signaling pathways and associated transcription factors. ABA appears to be important in the control of gene expression in both the latter stages of the dehydration and the early stages of rehydration. These findings add to the growing body of information detailing how plants tolerate and survive the severe cellular perturbations of dehydration, desiccation, and rehydration.
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Affiliation(s)
- Abou Yobi
- U.S. Department of Agriculture-Agricultural Research Service, Plant Genetic Research Unit, University of Missouri Columbia, Missouri, 65211 USA
| | - Karen A. Schlauch
- Nevada INBRE Bioinformatics Core, University of Nevada Reno, Nevada, 89557 USA
- Department of Biochemistry and Molecular Biology, University of Nevada Reno, Nevada, 89557 USA
| | - Richard L. Tillett
- Nevada INBRE Bioinformatics Core, University of Nevada Reno, Nevada, 89557 USA
| | - Won C. Yim
- Department of Biochemistry and Molecular Biology, University of Nevada Reno, Nevada, 89557 USA
| | - Catherine Espinoza
- Division of Plant Sciences, University of Missouri Columbia, Missouri, 65211 USA
| | - Bernard W. M. Wone
- Department of Biology, University of South Dakota, Vermillion, 57069 USA
| | - John C. Cushman
- Department of Biochemistry and Molecular Biology, University of Nevada Reno, Nevada, 89557 USA
| | - Melvin J. Oliver
- U.S. Department of Agriculture-Agricultural Research Service, Plant Genetic Research Unit, University of Missouri Columbia, Missouri, 65211 USA
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Carniel FC, Gerdol M, Montagner A, Banchi E, De Moro G, Manfrin C, Muggia L, Pallavicini A, Tretiach M. New features of desiccation tolerance in the lichen photobiont Trebouxia gelatinosa are revealed by a transcriptomic approach. PLANT MOLECULAR BIOLOGY 2016; 91:319-339. [PMID: 26992400 DOI: 10.1007/s11103-016-0468-5] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/17/2015] [Accepted: 03/04/2016] [Indexed: 06/05/2023]
Abstract
Trebouxia is the most common lichen-forming genus of aero-terrestrial green algae and all its species are desiccation tolerant (DT). The molecular bases of this remarkable adaptation are, however, still largely unknown. We applied a transcriptomic approach to a common member of the genus, T. gelatinosa, to investigate the alteration of gene expression occurring after dehydration and subsequent rehydration in comparison to cells kept constantly hydrated. We sequenced, de novo assembled and annotated the transcriptome of axenically cultured T. gelatinosa by using Illumina sequencing technology. We tracked the expression profiles of over 13,000 protein-coding transcripts. During the dehydration/rehydration cycle c. 92 % of the total protein-coding transcripts displayed a stable expression, suggesting that the desiccation tolerance of T. gelatinosa mostly relies on constitutive mechanisms. Dehydration and rehydration affected mainly the gene expression for components of the photosynthetic apparatus, the ROS-scavenging system, Heat Shock Proteins, aquaporins, expansins, and desiccation related proteins (DRPs), which are highly diversified in T. gelatinosa, whereas Late Embryogenesis Abundant Proteins were not affected. Only some of these phenomena were previously observed in other DT green algae, bryophytes and resurrection plants, other traits being distinctive of T. gelatinosa, and perhaps related to its symbiotic lifestyle. Finally, the phylogenetic inference extended to DRPs of other chlorophytes, embryophytes and bacteria clearly pointed out that DRPs of chlorophytes are not orthologous to those of embryophytes: some of them were likely acquired through horizontal gene transfer from extremophile bacteria which live in symbiosis within the lichen thallus.
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Affiliation(s)
- Fabio Candotto Carniel
- Dipartimento di Scienze della Vita, Università degli Studi di Trieste, via L. Giorgieri, 10, 34127, Trieste, Italy
- Institute of Botany, University of Innsbruck, Sternwartestraße, 15, 6020, Innsbruck, Austria
| | - Marco Gerdol
- Dipartimento di Scienze della Vita, Università degli Studi di Trieste, via L. Giorgieri, 10, 34127, Trieste, Italy.
| | - Alice Montagner
- Dipartimento di Scienze della Vita, Università degli Studi di Trieste, via L. Giorgieri, 10, 34127, Trieste, Italy
| | - Elisa Banchi
- Dipartimento di Scienze della Vita, Università degli Studi di Trieste, via L. Giorgieri, 10, 34127, Trieste, Italy
| | - Gianluca De Moro
- Dipartimento di Scienze della Vita, Università degli Studi di Trieste, via L. Giorgieri, 10, 34127, Trieste, Italy
| | - Chiara Manfrin
- Dipartimento di Scienze della Vita, Università degli Studi di Trieste, via L. Giorgieri, 10, 34127, Trieste, Italy
| | - Lucia Muggia
- Dipartimento di Scienze della Vita, Università degli Studi di Trieste, via L. Giorgieri, 10, 34127, Trieste, Italy
| | - Alberto Pallavicini
- Dipartimento di Scienze della Vita, Università degli Studi di Trieste, via L. Giorgieri, 10, 34127, Trieste, Italy
| | - Mauro Tretiach
- Dipartimento di Scienze della Vita, Università degli Studi di Trieste, via L. Giorgieri, 10, 34127, Trieste, Italy
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Griffiths CA, Gaff DF, Neale AD. Drying without senescence in resurrection plants. FRONTIERS IN PLANT SCIENCE 2014; 5:36. [PMID: 24575108 PMCID: PMC3922084 DOI: 10.3389/fpls.2014.00036] [Citation(s) in RCA: 52] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2013] [Accepted: 01/27/2014] [Indexed: 05/16/2023]
Abstract
Research into extreme drought tolerance in resurrection plants using species such as Craterostigma plantagineum, C. wilmsii, Xerophyta humilis, Tortula ruralis, and Sporobolus stapfianus has provided some insight into the desiccation tolerance mechanisms utilized by these plants to allow them to persist under extremely adverse environmental conditions. Some of the mechanisms used to ensure cellular preservation during severe dehydration appear to be peculiar to resurrection plants. Apart from the ability to preserve vital cellular components during drying and rehydration, such mechanisms include the ability to down-regulate growth-related metabolism rapidly in response to changes in water availability, and the ability to inhibit dehydration-induced senescence programs enabling reconstitution of photosynthetic capacity quickly following a rainfall event. Extensive research on the molecular mechanism of leaf senescence in non-resurrection plants has revealed a multi-layered regulatory network operates to control programed cell death pathways. However, very little is known about the molecular mechanisms that resurrection plants employ to avoid undergoing drought-related senescence during the desiccation process. To survive desiccation, dehydration in the perennial resurrection grass S. stapfianus must proceed slowly over a period of 7 days or more. Leaves detached from the plant before 60% relative water content (RWC) is attained are desiccation-sensitive indicating that desiccation tolerance is conferred in vegetative tissue of S. stapfianus when the leaf RWC has declined to 60%. Whilst some older leaves remaining attached to the plant during dehydration will senesce, suggesting dehydration-induced senescence may be influenced by leaf age or the rate of dehydration in individual leaves, the majority of leaves do not senesce. Rather these leaves dehydrate to air-dryness and revive fully following rehydration. Hence it seems likely that there are genes expressed in younger leaf tissues of resurrection plants that enable suppression of drought-related senescence pathways. As very few studies have directly addressed this phenomenon, this review aims to discuss current literature surrounding the activation and suppression of senescence pathways and how these pathways may differ in resurrection plants.
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Affiliation(s)
| | | | - Alan D. Neale
- School of Biological Sciences, Monash UniversityClayton, VIC, Australia
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Dinakar C, Bartels D. Desiccation tolerance in resurrection plants: new insights from transcriptome, proteome and metabolome analysis. FRONTIERS IN PLANT SCIENCE 2013; 4:482. [PMID: 24348488 DOI: 10.3389/fpls.201300482] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Received: 08/19/2013] [Accepted: 11/06/2013] [Indexed: 05/29/2023]
Abstract
Most higher plants are unable to survive desiccation to an air-dried state. An exception is a small group of vascular angiosperm plants, termed resurrection plants. They have evolved unique mechanisms of desiccation tolerance and thus can tolerate severe water loss, and mostly adjust their water content with the relative humidity in the environment. Desiccation tolerance is a complex phenomenon and depends on the regulated expression of numerous genes during dehydration and subsequent rehydration. Most of the resurrection plants have a large genome and are difficult to transform which makes them unsuitable for genetic approaches. However, technical advances have made it possible to analyze changes in gene expression on a large-scale. These approaches together with comparative studies with non-desiccation tolerant plants provide novel insights into the molecular processes required for desiccation tolerance and will shed light on identification of orphan genes with unknown functions. Here, we review large-scale recent transcriptomic, proteomic, and metabolomic studies that have been performed in desiccation tolerant plants and discuss how these studies contribute to understanding the molecular basis of desiccation tolerance.
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Affiliation(s)
- Challabathula Dinakar
- Institute of Molecular Physiology and Biotechnology of Plants, University of Bonn Bonn, Germany ; Department of Life Sciences, School of Basic and Applied Sciences, Central University of Tamil Nadu Thiruvarur, India
| | - Dorothea Bartels
- Institute of Molecular Physiology and Biotechnology of Plants, University of Bonn Bonn, Germany
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Dinakar C, Bartels D. Desiccation tolerance in resurrection plants: new insights from transcriptome, proteome and metabolome analysis. FRONTIERS IN PLANT SCIENCE 2013; 4:482. [PMID: 24348488 PMCID: PMC3842845 DOI: 10.3389/fpls.2013.00482] [Citation(s) in RCA: 125] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2013] [Accepted: 11/06/2013] [Indexed: 05/18/2023]
Abstract
Most higher plants are unable to survive desiccation to an air-dried state. An exception is a small group of vascular angiosperm plants, termed resurrection plants. They have evolved unique mechanisms of desiccation tolerance and thus can tolerate severe water loss, and mostly adjust their water content with the relative humidity in the environment. Desiccation tolerance is a complex phenomenon and depends on the regulated expression of numerous genes during dehydration and subsequent rehydration. Most of the resurrection plants have a large genome and are difficult to transform which makes them unsuitable for genetic approaches. However, technical advances have made it possible to analyze changes in gene expression on a large-scale. These approaches together with comparative studies with non-desiccation tolerant plants provide novel insights into the molecular processes required for desiccation tolerance and will shed light on identification of orphan genes with unknown functions. Here, we review large-scale recent transcriptomic, proteomic, and metabolomic studies that have been performed in desiccation tolerant plants and discuss how these studies contribute to understanding the molecular basis of desiccation tolerance.
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Affiliation(s)
- Challabathula Dinakar
- Institute of Molecular Physiology and Biotechnology of Plants, University of BonnBonn, Germany
- Department of Life Sciences, School of Basic and Applied Sciences, Central University of Tamil NaduThiruvarur, India
| | - Dorothea Bartels
- Institute of Molecular Physiology and Biotechnology of Plants, University of BonnBonn, Germany
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12
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Islam S, Griffiths CA, Blomstedt CK, Le TN, Gaff DF, Hamill JD, Neale AD. Increased biomass, seed yield and stress tolerance is conferred in Arabidopsis by a novel enzyme from the resurrection grass Sporobolus stapfianus that glycosylates the strigolactone analogue GR24. PLoS One 2013; 8:e80035. [PMID: 24224034 PMCID: PMC3818285 DOI: 10.1371/journal.pone.0080035] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2013] [Accepted: 09/27/2013] [Indexed: 12/21/2022] Open
Abstract
Isolation of gene transcripts from desiccated leaf tissues of the resurrection grass, Sporobolus stapfianus, resulted in the identification of a gene, SDG8i, encoding a Group 1 glycosyltransferase (UGT). Here, we examine the effects of introducing this gene, under control of the CaMV35S promoter, into the model plant Arabidopsis thaliana. Results show that Arabidopsis plants constitutively over-expressing SDG8i exhibit enhanced growth, reduced senescence, cold tolerance and a substantial improvement in protoplasmic drought tolerance. We hypothesise that expression of SDG8i in Arabidopsis negatively affects the bioactivity of metabolite/s that mediate/s environmentally-induced repression of cell division and expansion, both during normal development and in response to stress. The phenotype of transgenic plants over-expressing SDG8i suggests modulation in activities of both growth- and stress-related hormones. Plants overexpressing the UGT show evidence of elevated auxin levels, with the enzyme acting downstream of ABA to reduce drought-induced senescence. Analysis of the in vitro activity of the UGT recombinant protein product demonstrates that SDG8i can glycosylate the synthetic strigolactone analogue GR24, evoking a link with strigolactone-related processes in vivo. The large improvements observed in survival of transgenic Arabidopsis plants under cold-, salt- and drought-stress, as well as the substantial increases in growth rate and seed yield under non-stress conditions, indicates that overexpression of SDG8i in crop plants may provide a novel means of increasing plant productivity.
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Affiliation(s)
- Sharmin Islam
- School of Biological Sciences, Monash University, Melbourne, Victoria, Australia
| | - Cara A. Griffiths
- School of Biological Sciences, Monash University, Melbourne, Victoria, Australia
| | - Cecilia K. Blomstedt
- School of Biological Sciences, Monash University, Melbourne, Victoria, Australia
| | - Tuan-Ngoc Le
- School of Biological Sciences, Monash University, Melbourne, Victoria, Australia
- Biosciences Research Division, Victorian AgriBiosciences Centre, Melbourne, Victoria, Australia
| | - Donald F. Gaff
- School of Biological Sciences, Monash University, Melbourne, Victoria, Australia
| | - John D. Hamill
- Department of Forest and Ecosystem Science, University of Melbourne, Creswick, Victoria, Australia
| | - Alan D. Neale
- School of Biological Sciences, Monash University, Melbourne, Victoria, Australia
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Jogaiah S, Govind SR, Tran LSP. Systems biology-based approaches toward understanding drought tolerance in food crops. Crit Rev Biotechnol 2012; 33:23-39. [PMID: 22364373 DOI: 10.3109/07388551.2012.659174] [Citation(s) in RCA: 85] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
Economically important crops, such as maize, wheat, rice, barley, and other food crops are affected by even small changes in water potential at important growth stages. Developing a comprehensive understanding of host response to drought requires a global view of the complex mechanisms involved. Research on drought tolerance has generally been conducted using discipline-specific approaches. However, plant stress response is complex and interlinked to a point where discipline-specific approaches do not give a complete global analysis of all the interlinked mechanisms. Systems biology perspective is needed to understand genome-scale networks required for building long-lasting drought resistance. Network maps have been constructed by integrating multiple functional genomics data with both model plants, such as Arabidopsis thaliana, Lotus japonicus, and Medicago truncatula, and various food crops, such as rice and soybean. Useful functional genomics data have been obtained from genome-wide comparative transcriptome and proteome analyses of drought responses from different crops. This integrative approach used by many groups has led to identification of commonly regulated signaling pathways and genes following exposure to drought. Combination of functional genomics and systems biology is very useful for comparative analysis of other food crops and has the ability to develop stable food systems worldwide. In addition, studying desiccation tolerance in resurrection plants will unravel how combination of molecular genetic and metabolic processes interacts to produce a resurrection phenotype. Systems biology-based approaches have helped in understanding how these individual factors and mechanisms (biochemical, molecular, and metabolic) "interact" spatially and temporally. Signaling network maps of such interactions are needed that can be used to design better engineering strategies for improving drought tolerance of important crop species.
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Affiliation(s)
- Sudisha Jogaiah
- Downy Mildew Research Laboratory, Department of Studies in Biotechnology, University of Mysore, Mysore, Karnataka, India
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14
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Bai B, Sikron N, Gendler T, Kazachkova Y, Barak S, Grafi G, Khozin-Goldberg I, Fait A. Ecotypic Variability in the Metabolic Response of Seeds to Diurnal Hydration–Dehydration Cycles and its Relationship to Seed Vigor. ACTA ACUST UNITED AC 2011; 53:38-52. [DOI: 10.1093/pcp/pcr169] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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15
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Oliver MJ, Jain R, Balbuena TS, Agrawal G, Gasulla F, Thelen JJ. Proteome analysis of leaves of the desiccation-tolerant grass, Sporobolus stapfianus, in response to dehydration. PHYTOCHEMISTRY 2011; 72:1273-84. [PMID: 21109273 DOI: 10.1016/j.phytochem.2010.10.020] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2010] [Revised: 10/26/2010] [Accepted: 10/27/2010] [Indexed: 05/03/2023]
Abstract
Drought and its affects on agricultural production is a serious issue facing global efforts to increase food supplies and ensure food security for the growing world population. Understanding how plants respond to dehydration is an important prerequisite for developing strategies for crop improvement in drought tolerance. This has proved to be a difficult task as all of the current research plant models do not tolerate cellular dehydration well and, like all crops, they succumb to the effects of a relatively small water deficit of -4MPa or less. For these reasons many researchers have started to investigate the usefulness of resurrection plants, plants that can survive extremes of dehydration to the point of desiccation, to provide answers as to how plants tolerate water loss. We have chosen to investigate the leaf proteome response of the desiccation-tolerant grass Sporobolus stapfianus Gandoger to dehydration to a water content that encompasses the initiation of the cellular protection response evident in these plants. We used a combination of two-dimensional Difference Gel Electrophoresis (2D-DIGE) and liquid chromatography-tandem-mass spectrometry to compare the proteomes of young leaves from hydrated plants to those dehydrated to approximately 30% relative water content. High-resolution 2D-DIGE revealed 96 significantly different proteins and 82 of these spots yielded high-quality protein assignments by tandem-mass spectrometry. Inferences from the bioinformatic annotations of these proteins revealed the possible involvement of protein kinase-based signaling cascades and brassinosteroid involvement in the regulation of the cellular protection response. Enzymes of glycolysis, both cytoplasmic and plastidic, as well as five enzymes of the Calvin cycle increased in abundance. However, the RuBisCO large subunit and associated proteins were reduced, indicating a loss of carbon fixation but a continued need to supply the necessary carbon skeletons for the constituents involved in cell protection. Changes in abundance of several proteins that appear to have a function in chromatin structure and function indicate that these structures undergo significant changes as a result of dehydration. These observations give a unique "snap-shot" of the proteome of S. stapfianus at a critical point in the passage towards desiccation.
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16
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Understanding Vegetative Desiccation Tolerance Using Integrated Functional Genomics Approaches Within a Comparative Evolutionary Framework. PLANT DESICCATION TOLERANCE 2011. [DOI: 10.1007/978-3-642-19106-0_15] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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17
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Gaff DF, Blomstedt CK, Neale AD, Le TN, Hamill JD, Ghasempour HR. Sporobolus stapfianus, a model desiccation-tolerant grass. FUNCTIONAL PLANT BIOLOGY : FPB 2009; 36:589-599. [PMID: 32688672 DOI: 10.1071/fp08166] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/10/2008] [Accepted: 05/15/2009] [Indexed: 06/11/2023]
Abstract
Sporobolus stapfianus Gandoger, one of ~40 known 'anabiotic'grass species (i.e. 'able to regain vital activity from a state of latent life'), is the most versatile tool for research into desiccation tolerance in vegetative grass tissue. Current knowledge on this species is presented, including the features that suit it for investigations into the plant's ability to survive dehydration of its leaf protoplasm. The main contributors to desiccation tolerance in S. stapfianus leaves appear to be: accumulation during dehydration of protectants of membranes and proteins; mechanisms limiting oxidative damage; a retention of protein synthetic activity in late stages of drying that is linked with changes in gene expression and in the proteomic array; and an ability to retain net synthesis of ATP during drying. S. stapfianus exemplifies an advanced stage of an evolutionary trend in desiccation tolerant plants towards increased importance of the dehydration phase (for induction of tolerance, for synthesis of protectants and for proteomic changes).
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Affiliation(s)
- Donald F Gaff
- School of Biological Sciences, Monash University, Clayton, Vic. 3800, Australia
| | - Cecilia K Blomstedt
- School of Biological Sciences, Monash University, Clayton, Vic. 3800, Australia
| | - Alan D Neale
- School of Biological Sciences, Monash University, Clayton, Vic. 3800, Australia
| | - Tuan N Le
- School of Biological Sciences, Monash University, Clayton, Vic. 3800, Australia
| | - John D Hamill
- School of Biological Sciences, Monash University, Clayton, Vic. 3800, Australia
| | - Hamid R Ghasempour
- School of Biological Sciences, Monash University, Clayton, Vic. 3800, Australia
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18
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Moore JP, Le NT, Brandt WF, Driouich A, Farrant JM. Towards a systems-based understanding of plant desiccation tolerance. TRENDS IN PLANT SCIENCE 2009; 14:110-7. [PMID: 19179102 DOI: 10.1016/j.tplants.2008.11.007] [Citation(s) in RCA: 57] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2008] [Revised: 11/17/2008] [Accepted: 11/25/2008] [Indexed: 05/19/2023]
Abstract
Vegetative desiccation tolerance occurs in a unique group of species termed 'resurrection plants'. Here, we review the molecular genetic, physiological, biochemical, ultrastructural and biophysical studies that have been performed on a variety of resurrection plants to discover the mechanisms responsible for their tolerance. Desiccation tolerance in resurrection plants involves a combination of molecular genetic mechanisms, metabolic and antioxidant systems as well as macromolecular and structural stabilizing processes. We propose that a systems-biology approach coupled with multivariate data analysis is best suited to unraveling the mechanisms responsible for plant desiccation tolerance, as well as their integration with one another. This is of particular relevance to molecular biological engineering strategies for improving plant drought tolerance in important crop species, such as maize (Zea mays) and grapevine (Vitis vinifera).
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Affiliation(s)
- John P Moore
- Institute for Wine Biotechnology, Faculty of AgriSciences, Stellenbosch University, Private Bag X1, Matieland 7602, South Africa.
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19
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Farrant JM, Lehner A, Cooper K, Wiswedel S. Desiccation tolerance in the vegetative tissues of the fern Mohria caffrorum is seasonally regulated. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2009; 57:65-79. [PMID: 18786003 DOI: 10.1111/j.1365-313x.2008.03673.x] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
As there is limited information on the mechanisms of vegetative desiccation tolerance in pteridophytes, we undertook a comprehensive anatomical, ultrastructural, physiological and biochemical study on the fern Mohria caffrorum. Our data show that this species is desiccation-tolerant during the dry season, and desiccation-sensitive in the rainy season. This system allows the verification of protection mechanisms by comparison of tolerant and sensitive tissues of the same species at the same developmental age. Tolerant fronds acquire protection mechanisms during drying that are mostly similar to those reported for angiosperms. These include: (i) chlorophyll masking by abaxial scales and frond curling; (ii) increased antioxidant capacity that is maintained in dry tissues; (iii) mechanical stabilization of vacuoles in the dry state; (iv) de novo production of heat stable proteins (at least one identified as a putative chaperonin); (v) accumulation of protective carbohydrates (sucrose, raffinose family oligosaccharides and cyclitols). This study has implications for the biotechnological production of drought-tolerant crops, and allows speculation on the evolution of vegetative desiccation tolerance.
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Affiliation(s)
- Jill M Farrant
- Department of Molecular and Cellular Biology, University of Cape Town, Rondebosch 7701, South Africa
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20
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Pinheiro C, Cruz de Carvalho MH, Bartels D, Ricardo CP, Chaves MM. Dehydrins in Lupinus albus: pattern of protein accumulation in response to drought. FUNCTIONAL PLANT BIOLOGY : FPB 2008; 35:85-91. [PMID: 32688759 DOI: 10.1071/fp07179] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2007] [Accepted: 11/05/2007] [Indexed: 06/11/2023]
Abstract
Dehydrins (DHNs) are proteins that accumulate abundantly in various plant tissues in response to environmental stresses and during seed maturation, possibly assisting cells in tolerating dehydration. White lupins (Lupinus albus L.) are able to withstand periods of severe water deficit (WD) and previous work suggested that the stem plays a central role as a survival structure. To investigate DHNs involvement in this strategy, we studied tissue specific protein accumulation of a RAB16-like DHN in lupin during a progressive WD and early recovery. Differences were found between leaves, stems and roots. In leaves and roots, the accumulation of the RAB16-like DHN was independent of the water status whereas in the stem (cortex and stele), DHNs were only detected under severe plant WD (stele relative water content, RWC, reduction of 6-7% and cortex RWC reduction of 20%). DHN mRNA analysis by RT-PCR, showed the presence of one DHN mRNA regardless of the tissue or the plant water status.
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Affiliation(s)
- Carla Pinheiro
- Instituto de Tecnologia Química e Biológica (ITQB), Av. da Républica, Apartado 127, 2780-901 Oeiras, Portugal
| | - Maria H Cruz de Carvalho
- Instituto de Tecnologia Química e Biológica (ITQB), Av. da Républica, Apartado 127, 2780-901 Oeiras, Portugal
| | - Dorothea Bartels
- Institute of Molecular Physiology and Biotechnology of Plants (IMBIO), University of Bonn, Kirschallee 1, D-53115, Bonn, Germany
| | - Cândido Pinto Ricardo
- Instituto de Tecnologia Química e Biológica (ITQB), Av. da Républica, Apartado 127, 2780-901 Oeiras, Portugal
| | - M Manuela Chaves
- Instituto de Tecnologia Química e Biológica (ITQB), Av. da Républica, Apartado 127, 2780-901 Oeiras, Portugal
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