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For: Lecroq B, Lejzerowicz F, Bachar D, Christen R, Esling P, Baerlocher L, Østerås M, Farinelli L, Pawlowski J. Ultra-deep sequencing of foraminiferal microbarcodes unveils hidden richness of early monothalamous lineages in deep-sea sediments. Proc Natl Acad Sci U S A 2011;108:13177-82. [PMID: 21788523 DOI: 10.1073/pnas.1018426108] [Citation(s) in RCA: 75] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
Number Cited by Other Article(s)
1
Nguyen NL, Pawłowska J, Zajaczkowski M, Weiner AKM, Cordier T, Grant DM, De Schepper S, Pawłowski J. Taxonomic and abundance biases affect the record of marine eukaryotic plankton communities in sediment DNA archives. Mol Ecol Resour 2024;24:e14014. [PMID: 39188124 DOI: 10.1111/1755-0998.14014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2024] [Revised: 07/09/2024] [Accepted: 08/15/2024] [Indexed: 08/28/2024]
2
Li H, Lei Y, Fa W, Wu T, Li T. Environmental DNA sheds new insight on molecular adaptation of foraminifera to temperature from laboratory-controlled culture experiment. Ecol Evol 2024;14:e70243. [PMID: 39391814 PMCID: PMC11464909 DOI: 10.1002/ece3.70243] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2024] [Revised: 07/24/2024] [Accepted: 08/16/2024] [Indexed: 10/12/2024]  Open
3
Morard R, Darling KF, Weiner AKM, Hassenrück C, Vanni C, Cordier T, Henry N, Greco M, Vollmar NM, Milivojevic T, Rahman SN, Siccha M, Meilland J, Jonkers L, Quillévéré F, Escarguel G, Douady CJ, de Garidel-Thoron T, de Vargas C, Kucera M. The global genetic diversity of planktonic foraminifera reveals the structure of cryptic speciation in plankton. Biol Rev Camb Philos Soc 2024;99:1218-1241. [PMID: 38351434 DOI: 10.1111/brv.13065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2023] [Revised: 02/04/2024] [Accepted: 02/07/2024] [Indexed: 07/06/2024]
4
Mazurkiewicz M, Pawłowska J, Barrenechea Angeles I, Grzelak K, Deja K, Zaborska A, Pawłowski J, Włodarska-Kowalczuk M. Sediment DNA metabarcoding and morphology provide complementary insight into macrofauna and meiobenthos response to environmental gradients in an Arctic glacial fjord. MARINE ENVIRONMENTAL RESEARCH 2024;198:106552. [PMID: 38788477 DOI: 10.1016/j.marenvres.2024.106552] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2024] [Revised: 05/09/2024] [Accepted: 05/10/2024] [Indexed: 05/26/2024]
5
Barrenechea Angeles I, Nguyen NL, Greco M, Tan KS, Pawlowski J. Assigning the unassigned: A signature-based classification of rDNA metabarcodes reveals new deep-sea diversity. PLoS One 2024;19:e0298440. [PMID: 38422100 PMCID: PMC10903905 DOI: 10.1371/journal.pone.0298440] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Accepted: 01/23/2024] [Indexed: 03/02/2024]  Open
6
Singer D, Fouet MPA, Schweizer M, Mouret A, Quinchard S, Jorissen FJ. Unlocking foraminiferal genetic diversity on estuarine mudflats with eDNA metabarcoding. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023;902:165983. [PMID: 37543334 DOI: 10.1016/j.scitotenv.2023.165983] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2023] [Revised: 07/30/2023] [Accepted: 07/30/2023] [Indexed: 08/07/2023]
7
Siemensma F, Holzmann M. Novel contributions to the molecular and morphological diversity of freshwater monothalamid foraminifera: Description of six new species. Eur J Protistol 2023;90:126014. [PMID: 37633246 DOI: 10.1016/j.ejop.2023.126014] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2023] [Revised: 08/07/2023] [Accepted: 08/08/2023] [Indexed: 08/28/2023]
8
Nguyen N, Pawłowska J, Angeles IB, Zajaczkowski M, Pawłowski J. Metabarcoding reveals high diversity of benthic foraminifera linked to water masses circulation at coastal Svalbard. GEOBIOLOGY 2023;21:133-150. [PMID: 36259453 PMCID: PMC10092302 DOI: 10.1111/gbi.12530] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/28/2022] [Revised: 07/05/2022] [Accepted: 09/19/2022] [Indexed: 06/16/2023]
9
Dominguez‐Huerta G, Wainaina JM, Zayed AA, Culley AI, Kuhn JH, Sullivan MB. The RNA virosphere: How big and diverse is it? Environ Microbiol 2023;25:209-215. [PMID: 36511833 PMCID: PMC9852017 DOI: 10.1111/1462-2920.16312] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2022] [Accepted: 12/10/2022] [Indexed: 12/15/2022]
10
Renewal of planktonic foraminifera diversity after the Cretaceous Paleogene mass extinction by benthic colonizers. Nat Commun 2022;13:7135. [PMID: 36414628 PMCID: PMC9681854 DOI: 10.1038/s41467-022-34794-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2022] [Accepted: 11/08/2022] [Indexed: 11/23/2022]  Open
11
Thakur R, Collens A, Greco M, Sleith RS, Grattepanche JD, Katz LA. Newly designed foraminifera primers identify habitat-specific lineages through metabarcoding analyses. J Eukaryot Microbiol 2022;69:e12913. [PMID: 35332619 DOI: 10.1111/jeu.12913] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
12
Cordier T, Angeles IB, Henry N, Lejzerowicz F, Berney C, Morard R, Brandt A, Cambon-Bonavita MA, Guidi L, Lombard F, Arbizu PM, Massana R, Orejas C, Poulain J, Smith CR, Wincker P, Arnaud-Haond S, Gooday AJ, de Vargas C, Pawlowski J. Patterns of eukaryotic diversity from the surface to the deep-ocean sediment. SCIENCE ADVANCES 2022;8:eabj9309. [PMID: 35119936 PMCID: PMC8816347 DOI: 10.1126/sciadv.abj9309] [Citation(s) in RCA: 30] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
13
Han Y, Guo C, Guan X, McMinn A, Liu L, Zheng G, Jiang Y, Liang Y, Shao H, Tian J, Wang M. Comparison of Deep-Sea Picoeukaryotic Composition Estimated from the V4 and V9 Regions of 18S rRNA Gene with a Focus on the Hadal Zone of the Mariana Trench. MICROBIAL ECOLOGY 2022;83:34-47. [PMID: 33811505 DOI: 10.1007/s00248-021-01747-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/27/2020] [Accepted: 03/25/2021] [Indexed: 06/12/2023]
14
Milivojević T, Rahman SN, Raposo D, Siccha M, Kucera M, Morard R. High variability in SSU rDNA gene copy number among planktonic foraminifera revealed by single-cell qPCR. ISME COMMUNICATIONS 2021;1:63. [PMID: 36750661 PMCID: PMC9723665 DOI: 10.1038/s43705-021-00067-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/28/2021] [Revised: 10/07/2021] [Accepted: 10/14/2021] [Indexed: 01/09/2023]
15
Goraj W, Szafranek-Nakonieczna A, Grządziel J, Polakowski C, Słowakiewicz M, Zheng Y, Gałązka A, Stępniewska Z, Pytlak A. Microbial Involvement in Carbon Transformation via CH4 and CO2 in Saline Sedimentary Pool. BIOLOGY 2021;10:biology10080792. [PMID: 34440022 PMCID: PMC8389658 DOI: 10.3390/biology10080792] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/01/2021] [Revised: 08/06/2021] [Accepted: 08/14/2021] [Indexed: 11/16/2022]
16
Schoenle A, Hohlfeld M, Hermanns K, Mahé F, de Vargas C, Nitsche F, Arndt H. High and specific diversity of protists in the deep-sea basins dominated by diplonemids, kinetoplastids, ciliates and foraminiferans. Commun Biol 2021;4:501. [PMID: 33893386 PMCID: PMC8065057 DOI: 10.1038/s42003-021-02012-5] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2020] [Accepted: 03/08/2021] [Indexed: 02/02/2023]  Open
17
Rimet F, Aylagas E, Borja Á, Bouchez A, Canino A, Chauvin C, Chonova T, Ciampor Jr F, Costa FO, Ferrari BJD, Gastineau R, Goulon C, Gugger M, Holzmann M, Jahn R, Kahlert M, Kusber WH, Laplace-Treyture C, Leese F, Leliaert F, Mann DG, Marchand F, Méléder V, Pawlowski J, Rasconi S, Rivera S, Rougerie R, Schweizer M, Trobajo R, Vasselon V, Vivien R, Weigand A, Witkowski A, Zimmermann J, Ekrem T. Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life. METABARCODING AND METAGENOMICS 2021. [DOI: 10.3897/mbmg.5.58056] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]  Open
18
Rucińska A, Olszak M, Świerszcz S, Nobis M, Zubek S, Kusza G, Boczkowska M, Nowak A. Looking for Hidden Enemies of Metabarcoding: Species Composition, Habitat and Management Can Strongly Influence DNA Extraction while Examining Grassland Communities. Biomolecules 2021;11:318. [PMID: 33669773 PMCID: PMC7921978 DOI: 10.3390/biom11020318] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2021] [Revised: 02/15/2021] [Accepted: 02/17/2021] [Indexed: 12/02/2022]  Open
19
Integrating morphology and metagenomics to understand taxonomic variability of Amphisorus (Foraminifera, Miliolida) from Western Australia and Indonesia. PLoS One 2021;16:e0244616. [PMID: 33395419 PMCID: PMC7781389 DOI: 10.1371/journal.pone.0244616] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2020] [Accepted: 12/11/2020] [Indexed: 12/13/2022]  Open
20
Barrenechea Angeles I, Lejzerowicz F, Cordier T, Scheplitz J, Kucera M, Ariztegui D, Pawlowski J, Morard R. Planktonic foraminifera eDNA signature deposited on the seafloor remains preserved after burial in marine sediments. Sci Rep 2020;10:20351. [PMID: 33230106 PMCID: PMC7684305 DOI: 10.1038/s41598-020-77179-8] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2020] [Accepted: 11/02/2020] [Indexed: 01/08/2023]  Open
21
Ecological variables for deep-ocean monitoring must include microbiota and meiofauna for effective conservation. Nat Ecol Evol 2020;5:27-29. [PMID: 33199867 DOI: 10.1038/s41559-020-01335-6] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2020] [Revised: 07/27/2020] [Accepted: 09/23/2020] [Indexed: 11/08/2022]
22
Frontalini F, Cordier T, Balassi E, Armynot du Chatelet E, Cermakova K, Apothéloz-Perret-Gentil L, Martins MVA, Bucci C, Scantamburlo E, Treglia M, Bonamin V, Pawlowski J. Benthic foraminiferal metabarcoding and morphology-based assessment around three offshore gas platforms: Congruence and complementarity. ENVIRONMENT INTERNATIONAL 2020;144:106049. [PMID: 32835923 DOI: 10.1016/j.envint.2020.106049] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2020] [Revised: 08/07/2020] [Accepted: 08/07/2020] [Indexed: 06/11/2023]
23
Lara E, Dumack K, García-Martín JM, Kudryavtsev A, Kosakyan A. Amoeboid protist systematics: A report on the "Systematics of amoeboid protists" symposium at the VIIIth ECOP/ISOP meeting in Rome, 2019. Eur J Protistol 2020;76:125727. [PMID: 32755801 DOI: 10.1016/j.ejop.2020.125727] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2020] [Revised: 05/22/2020] [Accepted: 06/25/2020] [Indexed: 01/21/2023]
24
Li Q, Lei Y, Morard R, Li T, Wang B. Diversity hotspot and unique community structure of foraminifera in the world's deepest marine blue hole - Sansha Yongle Blue Hole. Sci Rep 2020;10:10257. [PMID: 32581270 PMCID: PMC7314809 DOI: 10.1038/s41598-020-67221-0] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2019] [Accepted: 06/01/2020] [Indexed: 11/09/2022]  Open
25
Gooday AJ, Schoenle A, Dolan JR, Arndt H. Protist diversity and function in the dark ocean - Challenging the paradigms of deep-sea ecology with special emphasis on foraminiferans and naked protists. Eur J Protistol 2020;75:125721. [PMID: 32575029 DOI: 10.1016/j.ejop.2020.125721] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2020] [Revised: 05/13/2020] [Accepted: 05/21/2020] [Indexed: 11/27/2022]
26
Modern Benthic Foraminiferal Diversity: An Initial Insight into the Total Foraminiferal Diversity along the Kuwait Coastal Water. DIVERSITY-BASEL 2020. [DOI: 10.3390/d12040142] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
27
Chronopoulou PM, Salonen I, Bird C, Reichart GJ, Koho KA. Metabarcoding Insights Into the Trophic Behavior and Identity of Intertidal Benthic Foraminifera. Front Microbiol 2019;10:1169. [PMID: 31191490 PMCID: PMC6547873 DOI: 10.3389/fmicb.2019.01169] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2018] [Accepted: 05/07/2019] [Indexed: 12/29/2022]  Open
28
Sample size effects on the assessment of eukaryotic diversity and community structure in aquatic sediments using high-throughput sequencing. Sci Rep 2018;8:11737. [PMID: 30082688 PMCID: PMC6078945 DOI: 10.1038/s41598-018-30179-1] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2018] [Accepted: 07/23/2018] [Indexed: 11/30/2022]  Open
29
Voltski I, Gooday AJ, Pawlowski J. Eyes of the Deep-sea Floor: The Integrative Taxonomy of the Foraminiferal Genus Vanhoeffenella. Protist 2018;169:235-267. [PMID: 29649777 DOI: 10.1016/j.protis.2017.11.003] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2017] [Revised: 11/17/2017] [Accepted: 11/18/2017] [Indexed: 11/16/2022]
30
Leray M, Knowlton N. Censusing marine eukaryotic diversity in the twenty-first century. Philos Trans R Soc Lond B Biol Sci 2017;371:rstb.2015.0331. [PMID: 27481783 PMCID: PMC4971183 DOI: 10.1098/rstb.2015.0331] [Citation(s) in RCA: 84] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/26/2016] [Indexed: 11/12/2022]  Open
31
Borrelli C, Hou Y, Pawlowski JW, Holzmann M, Katz ME, Chandler GT, Bowser SS. Assessing SSU rDNA Barcodes in Foraminifera: A Case Study using Bolivina quadrata. J Eukaryot Microbiol 2017;65:220-235. [PMID: 28865158 DOI: 10.1111/jeu.12471] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2017] [Revised: 08/07/2017] [Accepted: 08/22/2017] [Indexed: 12/15/2022]
32
Belda E, Coulibaly B, Fofana A, Beavogui AH, Traore SF, Gohl DM, Vernick KD, Riehle MM. Preferential suppression of Anopheles gambiae host sequences allows detection of the mosquito eukaryotic microbiome. Sci Rep 2017;7:3241. [PMID: 28607435 PMCID: PMC5468309 DOI: 10.1038/s41598-017-03487-1] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2016] [Accepted: 04/28/2017] [Indexed: 11/24/2022]  Open
33
Novel benthic foraminifera are abundant and diverse in an area of the abyssal equatorial Pacific licensed for polymetallic nodule exploration. Sci Rep 2017;7:45288. [PMID: 28382941 PMCID: PMC5382569 DOI: 10.1038/srep45288] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2016] [Accepted: 02/15/2017] [Indexed: 11/10/2022]  Open
34
Guardiola M, Wangensteen OS, Taberlet P, Coissac E, Uriz MJ, Turon X. Spatio-temporal monitoring of deep-sea communities using metabarcoding of sediment DNA and RNA. PeerJ 2016;4:e2807. [PMID: 28028473 PMCID: PMC5180584 DOI: 10.7717/peerj.2807] [Citation(s) in RCA: 73] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2016] [Accepted: 11/20/2016] [Indexed: 11/20/2022]  Open
35
High-throughput sequencing reveals diverse oomycete communities in oligotrophic peat bog micro-habitat. FUNGAL ECOL 2016. [DOI: 10.1016/j.funeco.2016.05.009] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
36
Laroche O, Wood SA, Tremblay LA, Ellis JI, Lejzerowicz F, Pawlowski J, Lear G, Atalah J, Pochon X. First evaluation of foraminiferal metabarcoding for monitoring environmental impact from an offshore oil drilling site. MARINE ENVIRONMENTAL RESEARCH 2016;120:225-235. [PMID: 27595900 DOI: 10.1016/j.marenvres.2016.08.009] [Citation(s) in RCA: 49] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2016] [Revised: 08/12/2016] [Accepted: 08/23/2016] [Indexed: 06/06/2023]
37
Protist metabarcoding and environmental biomonitoring: Time for change. Eur J Protistol 2016;55:12-25. [DOI: 10.1016/j.ejop.2016.02.003] [Citation(s) in RCA: 99] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2015] [Revised: 01/29/2016] [Accepted: 02/12/2016] [Indexed: 01/06/2023]
38
Cutting the Umbilical: New Technological Perspectives in Benthic Deep-Sea Research. JOURNAL OF MARINE SCIENCE AND ENGINEERING 2016. [DOI: 10.3390/jmse4020036] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
39
Vermeulen ET, Lott MJ, Eldridge MDB, Power ML. Evaluation of next generation sequencing for the analysis of Eimeria communities in wildlife. J Microbiol Methods 2016;124:1-9. [PMID: 26944624 DOI: 10.1016/j.mimet.2016.02.018] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2015] [Revised: 02/23/2016] [Accepted: 02/29/2016] [Indexed: 12/31/2022]
40
Grossmann L, Jensen M, Heider D, Jost S, Glücksman E, Hartikainen H, Mahamdallie SS, Gardner M, Hoffmann D, Bass D, Boenigk J. Protistan community analysis: key findings of a large-scale molecular sampling. ISME JOURNAL 2016;10:2269-79. [PMID: 26859769 PMCID: PMC4989302 DOI: 10.1038/ismej.2016.10] [Citation(s) in RCA: 74] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/15/2015] [Revised: 12/14/2015] [Accepted: 01/04/2016] [Indexed: 11/22/2022]
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Santoferrara LF, Grattepanche JD, Katz LA, McManus GB. Patterns and processes in microbial biogeography: do molecules and morphologies give the same answers? ISME JOURNAL 2016;10:1779-90. [PMID: 26849313 DOI: 10.1038/ismej.2015.224] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2015] [Revised: 10/28/2015] [Accepted: 11/03/2015] [Indexed: 01/28/2023]
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Pasulka AL, Levin LA, Steele JA, Case DH, Landry MR, Orphan VJ. Microbial eukaryotic distributions and diversity patterns in a deep-sea methane seep ecosystem. Environ Microbiol 2016;18:3022-43. [PMID: 26663587 DOI: 10.1111/1462-2920.13185] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2015] [Revised: 12/03/2015] [Accepted: 12/08/2015] [Indexed: 11/30/2022]
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Dell’Anno A, Carugati L, Corinaldesi C, Riccioni G, Danovaro R. Unveiling the Biodiversity of Deep-Sea Nematodes through Metabarcoding: Are We Ready to Bypass the Classical Taxonomy? PLoS One 2015;10:e0144928. [PMID: 26701112 PMCID: PMC4699195 DOI: 10.1371/journal.pone.0144928] [Citation(s) in RCA: 56] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2015] [Accepted: 11/25/2015] [Indexed: 11/18/2022]  Open
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Torti A, Lever MA, Jørgensen BB. Origin, dynamics, and implications of extracellular DNA pools in marine sediments. Mar Genomics 2015;24 Pt 3:185-96. [DOI: 10.1016/j.margen.2015.08.007] [Citation(s) in RCA: 167] [Impact Index Per Article: 18.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2015] [Accepted: 08/29/2015] [Indexed: 12/17/2022]
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Pochon X, Wood SA, Keeley NB, Lejzerowicz F, Esling P, Drew J, Pawlowski J. Accurate assessment of the impact of salmon farming on benthic sediment enrichment using foraminiferal metabarcoding. MARINE POLLUTION BULLETIN 2015;100:370-382. [PMID: 26337228 DOI: 10.1016/j.marpolbul.2015.08.022] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/13/2015] [Revised: 08/09/2015] [Accepted: 08/11/2015] [Indexed: 06/05/2023]
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Highly divergent ancient gene families in metagenomic samples are compatible with additional divisions of life. Biol Direct 2015;10:64. [PMID: 26502935 PMCID: PMC4624368 DOI: 10.1186/s13062-015-0092-3] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2015] [Accepted: 10/13/2015] [Indexed: 11/16/2022]  Open
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Mohrbeck I, Raupach MJ, Martínez Arbizu P, Knebelsberger T, Laakmann S. High-Throughput Sequencing-The Key to Rapid Biodiversity Assessment of Marine Metazoa? PLoS One 2015;10:e0140342. [PMID: 26479071 PMCID: PMC4610693 DOI: 10.1371/journal.pone.0140342] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2014] [Accepted: 09/24/2015] [Indexed: 02/03/2023]  Open
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Guardiola M, Uriz MJ, Taberlet P, Coissac E, Wangensteen OS, Turon X. Deep-Sea, Deep-Sequencing: Metabarcoding Extracellular DNA from Sediments of Marine Canyons. PLoS One 2015;10:e0139633. [PMID: 26436773 PMCID: PMC4593591 DOI: 10.1371/journal.pone.0139633] [Citation(s) in RCA: 77] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2015] [Accepted: 09/14/2015] [Indexed: 12/22/2022]  Open
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Boufahja F, Semprucci F, Beyrem H, Bhadury P. Marine Nematode Taxonomy in Africa: Promising Prospects Against Scarcity of Information. J Nematol 2015;47:198-206. [PMID: 26527841 PMCID: PMC4612190] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2015] [Indexed: 06/05/2023]  Open
50
Insights into Diversity and Imputed Metabolic Potential of Bacterial Communities in the Continental Shelf of Agatti Island. PLoS One 2015;10:e0129864. [PMID: 26066038 PMCID: PMC4465901 DOI: 10.1371/journal.pone.0129864] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2014] [Accepted: 05/13/2015] [Indexed: 02/01/2023]  Open
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