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Villalba de la Peña M, Kronholm I. Antimicrobial resistance in the wild: Insights from epigenetics. Evol Appl 2024; 17:e13707. [PMID: 38817397 PMCID: PMC11134192 DOI: 10.1111/eva.13707] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2023] [Revised: 03/04/2024] [Accepted: 04/26/2024] [Indexed: 06/01/2024] Open
Abstract
Spreading of bacterial and fungal strains that are resistant to antimicrobials poses a serious threat to the well-being of humans, animals, and plants. Antimicrobial resistance has been mainly investigated in clinical settings. However, throughout their evolutionary history microorganisms in the wild have encountered antimicrobial substances, forcing them to evolve strategies to combat antimicrobial action. It is well known that many of these strategies are based on genetic mechanisms, but these do not fully explain important aspects of the antimicrobial response such as the rapid development of resistance, reversible phenotypes, and hetero-resistance. Consequently, attention has turned toward epigenetic pathways that may offer additional insights into antimicrobial mechanisms. The aim of this review is to explore the epigenetic mechanisms that confer antimicrobial resistance, focusing on those that might be relevant for resistance in the wild. First, we examine the presence of antimicrobials in natural settings. Then we describe the documented epigenetic mechanisms in bacteria and fungi associated with antimicrobial resistance and discuss innovative epigenetic editing techniques to establish causality in this context. Finally, we discuss the relevance of these epigenetic mechanisms on the evolutionary dynamics of antimicrobial resistance in the wild, emphasizing the critical role of priming in the adaptation process. We underscore the necessity of incorporating non-genetic mechanisms into our understanding of antimicrobial resistance evolution. These mechanisms offer invaluable insights into the dynamics of antimicrobial adaptation within natural ecosystems.
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Affiliation(s)
| | - Ilkka Kronholm
- Department of Biological and Environmental ScienceUniversity of JyväskyläJyväskyläFinland
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2
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Kalinka E, Brody SM, Swafford AJM, Medina EM, Fritz-Laylin LK. Genetic transformation of the frog-killing chytrid fungus Batrachochytrium dendrobatidis. Proc Natl Acad Sci U S A 2024; 121:e2317928121. [PMID: 38236738 PMCID: PMC10823177 DOI: 10.1073/pnas.2317928121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2023] [Accepted: 12/13/2023] [Indexed: 01/23/2024] Open
Abstract
Batrachochytrium dendrobatidis (Bd), a causative agent of chytridiomycosis, is decimating amphibian populations around the world. Bd belongs to the chytrid lineage, a group of early-diverging fungi that are widely used to study fungal evolution. Like all chytrids, Bd develops from a motile form into a sessile, growth form, a transition that involves drastic changes in its cytoskeletal architecture. Efforts to study Bd cell biology, development, and pathogenicity have been limited by the lack of genetic tools with which to test hypotheses about underlying molecular mechanisms. Here, we report the development of a transient genetic transformation system for Bd. We used electroporation to deliver exogenous DNA into Bd cells and detected transgene expression for up to three generations under both heterologous and native promoters. We also adapted the transformation protocol for selection using an antibiotic resistance marker. Finally, we used this system to express fluorescent protein fusions and, as a proof of concept, expressed a genetically encoded probe for the actin cytoskeleton. Using live-cell imaging, we visualized the distribution and dynamics of polymerized actin at each stage of the Bd life cycle, as well as during key developmental transitions. This transformation system enables direct testing of key hypotheses regarding mechanisms of Bd pathogenesis. This technology also paves the way for answering fundamental questions of chytrid cell, developmental, and evolutionary biology.
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Affiliation(s)
- Erik Kalinka
- Department of Biology, University of Massachusetts, Amherst, MA01003
| | | | | | - Edgar M. Medina
- Department of Biology, University of Massachusetts, Amherst, MA01003
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3
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Osborne OG, Jiménez RR, Byrne AQ, Gratwicke B, Ellison A, Muletz-Wolz CR. Phylosymbiosis shapes skin bacterial communities and pathogen-protective function in Appalachian salamanders. THE ISME JOURNAL 2024; 18:wrae104. [PMID: 38861457 PMCID: PMC11195472 DOI: 10.1093/ismejo/wrae104] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2024] [Revised: 05/09/2024] [Accepted: 06/10/2024] [Indexed: 06/13/2024]
Abstract
Phylosymbiosis is an association between host-associated microbiome composition and host phylogeny. This pattern can arise via the evolution of host traits, habitat preferences, diets, and the co-diversification of hosts and microbes. Understanding the drivers of phylosymbiosis is vital for modelling disease-microbiome interactions and manipulating microbiomes in multi-host systems. This study quantifies phylosymbiosis in Appalachian salamander skin in the context of infection by the fungal pathogen Batrachochytrium dendrobatidis (Bd), while accounting for environmental microbiome exposure. We sampled ten salamander species representing >150M years of divergence, assessed their Bd infection status, and analysed their skin and environmental microbiomes. Our results reveal a significant signal of phylosymbiosis, whereas the local environmental pool of microbes, climate, geography, and Bd infection load had a smaller impact. Host-microbe co-speciation was not evident, indicating that the effect stems from the evolution of host traits influencing microbiome assembly. Bd infection is correlated with host phylogeny and the abundance of Bd-inhibitory bacterial strains, suggesting that the long-term evolutionary dynamics between salamander hosts and their skin microbiomes affect the present-day distribution of the pathogen, along with habitat-linked exposure risk. Five Bd-inhibitory bacterial strains showed unusual generalism: occurring in most host species and habitats. These generalist strains may enhance the likelihood of probiotic manipulations colonising and persisting on hosts. Our results underscore the substantial influence of host-microbiome eco-evolutionary dynamics on environmental health and disease outcomes.
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Affiliation(s)
- Owen G Osborne
- School of Environmental and Natural Sciences, Bangor University, Deiniol Road, Bangor, Gwynedd LL57 2DG, United Kingdom
| | - Randall R Jiménez
- Center for Conservation Genomics, Smithsonian’s National Zoological Park and Conservation Biology Institute, Washington, DC 20008, United States
- International Union for Conservation of Nature, C. 39, Los Yoses, San Jose, 146-2150, Costa Rica
| | - Allison Q Byrne
- Center for Conservation Genomics, Smithsonian’s National Zoological Park and Conservation Biology Institute, Washington, DC 20008, United States
- Department of Environmental Science, Policy and Management, University of California, Berkeley, CA 94720-3114, United States
| | - Brian Gratwicke
- Center for Species Survival, Smithsonian’s National Zoological Park and Conservation Biology Institute, Front Royal, VA 22630, United States
| | - Amy Ellison
- School of Environmental and Natural Sciences, Bangor University, Deiniol Road, Bangor, Gwynedd LL57 2DG, United Kingdom
| | - Carly R Muletz-Wolz
- Center for Conservation Genomics, Smithsonian’s National Zoological Park and Conservation Biology Institute, Washington, DC 20008, United States
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4
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Belasen AM, Peek RA, Adams AJ, Russell ID, De León ME, Adams MJ, Bettaso J, Breedveld KGH, Catenazzi A, Dillingham CP, Grear DA, Halstead BJ, Johnson PG, Kleeman PM, Koo MS, Koppl CW, Lauder JD, Padgett-Flohr G, Piovia-Scott J, Pope KL, Vredenburg V, Westphal M, Wiseman K, Kupferberg SJ. Chytrid infections exhibit historical spread and contemporary seasonality in a declining stream-breeding frog. ROYAL SOCIETY OPEN SCIENCE 2024; 11:231270. [PMID: 38298390 PMCID: PMC10827429 DOI: 10.1098/rsos.231270] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/26/2023] [Accepted: 12/18/2023] [Indexed: 02/02/2024]
Abstract
Species with extensive geographical ranges pose special challenges to assessing drivers of wildlife disease, necessitating collaborative and large-scale analyses. The imperilled foothill yellow-legged frog (Rana boylii) inhabits a wide geographical range and variable conditions in rivers of California and Oregon (USA), and is considered threatened by the pathogen Batrachochytrium dendrobatidis (Bd). To assess drivers of Bd infections over time and space, we compiled over 2000 datapoints from R. boylii museum specimens (collected 1897-2005) and field samples (2005-2021) spanning 9° of latitude. We observed a south-to-north spread of Bd detections beginning in the 1940s and increase in prevalence from the 1940s to 1970s, coinciding with extirpation from southern latitudes. We detected eight high-prevalence geographical clusters through time that span the species' geographical range. Field-sampled male R. boylii exhibited the highest prevalence, and juveniles sampled in autumn exhibited the highest loads. Bd infection risk was highest in lower elevation rain-dominated watersheds, and with cool temperatures and low stream-flow conditions at the end of the dry season. Through a holistic assessment of relationships between infection risk, geographical context and time, we identify the locations and time periods where Bd mitigation and monitoring will be critical for conservation of this imperilled species.
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Affiliation(s)
- A. M. Belasen
- Department of Integrative Biology, University of Texas at Austin, Austin, TX, USA
- Department of Ecology and Evolutionary Biology, Cornell University, Ithaca, NY, USA
| | - R. A. Peek
- California Department of Fish and Wildlife, West Sacramento, CA, USA
| | - A. J. Adams
- Earth Research Institute, University of California, Santa Barbara, CA, USA
| | - I. D. Russell
- Department of Ecology, Evolution, and Marine Biology, University of California, Santa Barbara, CA, USA
| | - M. E. De León
- Genome Center, University of California, Davis, CA, USA
| | - M. J. Adams
- U.S. Geological Survey, Forest and Rangeland Ecosystem Science Center, Corvallis, OR, USA
| | - J. Bettaso
- Six Rivers National Forest, Lower Trinity Ranger District, USDA Forest Service, P.O. Box 68, Willow Creek, CA, USA
| | | | - A. Catenazzi
- Department of Biological Sciences, Florida International University, Miami, FL, USA
| | | | - D. A. Grear
- U.S. Geological Survey, National Wildlife Health Center, Madison, WI, USA
| | - B. J. Halstead
- Point Reyes Field Station, U.S. Geological Survey, Western Ecological Research Center, Point Reyes Station, CA, USA
| | - P. G. Johnson
- Pinnacles National Park, National Park Service, Paicines, CA, USA
| | - P. M. Kleeman
- Point Reyes Field Station, U.S. Geological Survey, Western Ecological Research Center, Point Reyes Station, CA, USA
| | - M. S. Koo
- Museum of Vertebrate Zoology, University of California, Berkeley, CA
| | - C. W. Koppl
- Plumas National Forest, USDA Forest Service, Quincy, CA, USA
| | | | | | - J. Piovia-Scott
- School of Biological Sciences, Washington State University, Vancouver, WA, USA
| | - K. L. Pope
- Pacific Southwest Research Station, USDA Forest Service, Arcata, CA, USA
| | - V. Vredenburg
- Department of Biology, San Francisco State University, San Francisco, CA, USA
| | - M. Westphal
- Central Coast Field Office, United States Bureau of Land Management, Marina, CA, USA
| | - K. Wiseman
- Department of Herpetology, California Academy of Sciences, San Francisco, CA, USA
| | - S. J. Kupferberg
- Department of Integrative Biology, University of California, Berkeley, CA, USA
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5
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Salazar-Hamm PS, Johnson WL, Nofchissey RA, Salazar JR, Gonzalez P, Goodfellow SM, Dunnum JL, Bradfute SB, Armién B, Cook JA, Domman DB, Dinwiddie DL. Choclo virus (CHOV) recovered from deep metatranscriptomics of archived frozen tissues in natural history biorepositories. PLoS Negl Trop Dis 2024; 18:e0011672. [PMID: 38215158 PMCID: PMC10810438 DOI: 10.1371/journal.pntd.0011672] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2023] [Revised: 01/25/2024] [Accepted: 01/03/2024] [Indexed: 01/14/2024] Open
Abstract
BACKGROUND Hantaviruses are negative-stranded RNA viruses that can sometimes cause severe disease in humans; however, they are maintained in mammalian host populations without causing harm. In Panama, sigmodontine rodents serve as hosts to transmissible hantaviruses. Due to natural and anthropogenic forces, these rodent populations are having increased contact with humans. METHODS We extracted RNA and performed Illumina deep metatranscriptomic sequencing on Orthohantavirus seropositive museum tissues from rodents. We acquired sequence reads mapping to Choclo virus (CHOV, Orthohantavirus chocloense) from heart and kidney tissue of a two-decade old frozen museum sample from a Costa Rican pygmy rice rat (Oligoryzomys costaricensis) collected in Panama. Reads mapped to the CHOV reference were assembled and then validated by visualization of the mapped reads against the assembly. RESULTS We recovered a 91% complete consensus sequence from a reference-guided assembly to CHOV with an average of 16X coverage. The S and M segments used in our phylogenetic analyses were nearly complete (98% and 99%, respectively). There were 1,199 ambiguous base calls of which 93% were present in the L segment. Our assembled genome varied 1.1% from the CHOV reference sequence resulting in eight nonsynonymous mutations. Further analysis of all publicly available partial S segment sequences support a clear relationship between CHOV clinical cases and O. costaricensis acquired strains. CONCLUSIONS Viruses occurring at extremely low abundances can be recovered from deep metatranscriptomics of archival tissues housed in research natural history museum biorepositories. Our efforts resulted in the second CHOV genome publicly available. This genomic data is important for future surveillance and diagnostic tools as well as understanding the evolution and pathogenicity of CHOV.
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Affiliation(s)
- Paris S. Salazar-Hamm
- Clinical and Translational Science Center, University of New Mexico, Albuquerque, New Mexico, United States of America
- Center for Global Health, Department of Internal Medicine, University of New Mexico Health Sciences Center, Albuquerque, New Mexico, United States of America
- Department of Biology, University of New Mexico, Albuquerque, New Mexico, United States of America
| | - William L. Johnson
- Department of Pediatrics, University of New Mexico Health Sciences Center, Albuquerque, New Mexico, United States of America
| | - Robert A. Nofchissey
- Center for Global Health, Department of Internal Medicine, University of New Mexico Health Sciences Center, Albuquerque, New Mexico, United States of America
| | - Jacqueline R. Salazar
- Department of Research in Emerging and Zoonotic Infectious Diseases, Gorgas Memorial Institute of Health Studies, Panama City, Panama
| | - Publio Gonzalez
- Department of Research in Emerging and Zoonotic Infectious Diseases, Gorgas Memorial Institute of Health Studies, Panama City, Panama
| | - Samuel M. Goodfellow
- Center for Global Health, Department of Internal Medicine, University of New Mexico Health Sciences Center, Albuquerque, New Mexico, United States of America
| | - Jonathan L. Dunnum
- Department of Biology, University of New Mexico, Albuquerque, New Mexico, United States of America
- Museum of Southwestern Biology, University of New Mexico, Albuquerque, New Mexico, United States of America
| | - Steven B. Bradfute
- Center for Global Health, Department of Internal Medicine, University of New Mexico Health Sciences Center, Albuquerque, New Mexico, United States of America
| | - Blas Armién
- Department of Research in Emerging and Zoonotic Infectious Diseases, Gorgas Memorial Institute of Health Studies, Panama City, Panama
- Sistema Nacional de Investigación (SNI), Secretaria Nacional de Ciencia, Tecnología e Innovacion (SENACYT), Panama City, Panama
| | - Joseph A. Cook
- Department of Biology, University of New Mexico, Albuquerque, New Mexico, United States of America
- Museum of Southwestern Biology, University of New Mexico, Albuquerque, New Mexico, United States of America
| | - Daryl B. Domman
- Clinical and Translational Science Center, University of New Mexico, Albuquerque, New Mexico, United States of America
- Center for Global Health, Department of Internal Medicine, University of New Mexico Health Sciences Center, Albuquerque, New Mexico, United States of America
| | - Darrell L. Dinwiddie
- Department of Pediatrics, University of New Mexico Health Sciences Center, Albuquerque, New Mexico, United States of America
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6
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Reinhold JM, Halbert E, Roark M, Smith SN, Stroh KM, Siler CD, McLeod DS, Lahondère C. The role of Culex territans mosquitoes in the transmission of Batrachochytrium dendrobatidis to amphibian hosts. Parasit Vectors 2023; 16:424. [PMID: 37974288 PMCID: PMC10655354 DOI: 10.1186/s13071-023-05992-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2023] [Accepted: 09/29/2023] [Indexed: 11/19/2023] Open
Abstract
BACKGROUND Mosquitoes are the deadliest organisms in the world, killing an estimated 750,000 people per year due to the pathogens they can transmit. Mosquitoes also pose a major threat to other vertebrate animals. Culex territans is a mosquito species found in temperate zones worldwide that feeds almost exclusively on amphibians and can transmit parasites; however, little is known about its ability to transmit other pathogens, including fungi. Batrachochytrium dendrobatidis (Bd) is a topical pathogenic fungus that spreads through contact. With amphibian populations around the world experiencing mass die-offs and extinctions due to this pathogen, it is critical to study all potential modes of transmission. Because Cx. territans mosquitoes are in contact with their hosts for long periods of time while blood-feeding, we hypothesize that they can transmit and pick up Bd. METHODS In this study, we first assessed Cx. territans ability to transfer the fungus from an infected surface to a clean one under laboratory conditions. We also conducted a surveillance study of Bd infections in frogs and mosquitoes in the field (Mountain Lake Biological station, VA, USA). In parallel, we determined Cx. territans host preference via blood meal analysis of field caught mosquitoes. RESULTS We found that this mosquito species can carry the fungus to an uninfected surface, implying that they may have the ability to transmit Bd to their amphibian hosts. We also found that Cx. territans feed primarily on green frogs (Rana clamitans) and bullfrogs (Rana catesbeiana) and that the prevalence of Bd within the frog population at our field site varied between years. CONCLUSIONS This study provides critical insights into understanding the role of amphibian-biting mosquitoes in transmitting pathogens, which can be applied to disease ecology of susceptible amphibian populations worldwide.
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Affiliation(s)
- Joanna M Reinhold
- Department of Biochemistry, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA
- The Fralin Life Science, InstituteVirginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA
| | | | - Megan Roark
- University of Virginia's College at Wise, Wise, VA, 24293, USA
| | - Sierra N Smith
- Sam Noble Oklahoma Museum of Natural History and School of Biological Sciences, The University of Oklahoma, Norman, OK, 73072, USA
| | - Katherine M Stroh
- Sam Noble Oklahoma Museum of Natural History and School of Biological Sciences, The University of Oklahoma, Norman, OK, 73072, USA
| | - Cameron D Siler
- Sam Noble Oklahoma Museum of Natural History and School of Biological Sciences, The University of Oklahoma, Norman, OK, 73072, USA
| | - David S McLeod
- Murphy Deming College of Health Sciences, Mary Baldwin University, Staunton, VA, 24401, USA
| | - Chloé Lahondère
- Department of Biochemistry, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA.
- The Fralin Life Science, InstituteVirginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA.
- Center of Emerging, Zoonotic and Arthropod-Borne Pathogens, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA.
- The Global Change Center, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA.
- Department of Entomology, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA.
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7
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Nachman MW, Beckman EJ, Bowie RCK, Cicero C, Conroy CJ, Dudley R, Hayes TB, Koo MS, Lacey EA, Martin CH, McGuire JA, Patton JL, Spencer CL, Tarvin RD, Wake MH, Wang IJ, Achmadi A, Álvarez-Castañeda ST, Andersen MJ, Arroyave J, Austin CC, Barker FK, Barrow LN, Barrowclough GF, Bates J, Bauer AM, Bell KC, Bell RC, Bronson AW, Brown RM, Burbrink FT, Burns KJ, Cadena CD, Cannatella DC, Castoe TA, Chakrabarty P, Colella JP, Cook JA, Cracraft JL, Davis DR, Davis Rabosky AR, D’Elía G, Dumbacher JP, Dunnum JL, Edwards SV, Esselstyn JA, Faivovich J, Fjeldså J, Flores-Villela OA, Ford K, Fuchs J, Fujita MK, Good JM, Greenbaum E, Greene HW, Hackett S, Hamidy A, Hanken J, Haryoko T, Hawkins MTR, Heaney LR, Hillis DM, Hollingsworth BD, Hornsby AD, Hosner PA, Irham M, Jansa S, Jiménez RA, Joseph L, Kirchman JJ, LaDuc TJ, Leaché AD, Lessa EP, López-Fernández H, Mason NA, McCormack JE, McMahan CD, Moyle RG, Ojeda RA, Olson LE, Kin Onn C, Parenti LR, Parra-Olea G, Patterson BD, Pauly GB, Pavan SE, Peterson AT, Poe S, Rabosky DL, Raxworthy CJ, Reddy S, Rico-Guevara A, Riyanto A, Rocha LA, Ron SR, Rovito SM, Rowe KC, Rowley J, Ruane S, Salazar-Valenzuela D, Shultz AJ, Sidlauskas B, Sikes DS, Simmons NB, Stiassny MLJ, Streicher JW, Stuart BL, Summers AP, Tavera J, Teta P, Thompson CW, Timm RM, Torres-Carvajal O, Voelker G, Voss RS, Winker K, Witt C, Wommack EA, Zink RM. Specimen collection is essential for modern science. PLoS Biol 2023; 21:e3002318. [PMID: 37992027 PMCID: PMC10664955 DOI: 10.1371/journal.pbio.3002318] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2023] [Accepted: 08/30/2023] [Indexed: 11/24/2023] Open
Abstract
Natural history museums are vital repositories of specimens, samples and data that inform about the natural world; this Formal Comment revisits a Perspective that advocated for the adoption of compassionate collection practices, querying whether it will ever be possible to completely do away with whole animal specimen collection.
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Affiliation(s)
- Michael W. Nachman
- Museum of Vertebrate Zoology, UC Berkeley, Berkeley, California, United States of America
| | - Elizabeth J. Beckman
- Museum of Vertebrate Zoology, UC Berkeley, Berkeley, California, United States of America
| | - Rauri CK Bowie
- Museum of Vertebrate Zoology, UC Berkeley, Berkeley, California, United States of America
| | - Carla Cicero
- Museum of Vertebrate Zoology, UC Berkeley, Berkeley, California, United States of America
| | - Chris J. Conroy
- Museum of Vertebrate Zoology, UC Berkeley, Berkeley, California, United States of America
| | - Robert Dudley
- Museum of Vertebrate Zoology, UC Berkeley, Berkeley, California, United States of America
| | - Tyrone B. Hayes
- Museum of Vertebrate Zoology, UC Berkeley, Berkeley, California, United States of America
| | - Michelle S. Koo
- Museum of Vertebrate Zoology, UC Berkeley, Berkeley, California, United States of America
| | - Eileen A. Lacey
- Museum of Vertebrate Zoology, UC Berkeley, Berkeley, California, United States of America
| | - Christopher H. Martin
- Museum of Vertebrate Zoology, UC Berkeley, Berkeley, California, United States of America
| | - Jimmy A. McGuire
- Museum of Vertebrate Zoology, UC Berkeley, Berkeley, California, United States of America
| | - James L. Patton
- Museum of Vertebrate Zoology, UC Berkeley, Berkeley, California, United States of America
| | - Carol L. Spencer
- Museum of Vertebrate Zoology, UC Berkeley, Berkeley, California, United States of America
| | - Rebecca D. Tarvin
- Museum of Vertebrate Zoology, UC Berkeley, Berkeley, California, United States of America
| | - Marvalee H. Wake
- Museum of Vertebrate Zoology, UC Berkeley, Berkeley, California, United States of America
| | - Ian J. Wang
- Museum of Vertebrate Zoology, UC Berkeley, Berkeley, California, United States of America
| | - Anang Achmadi
- Museum Zoologicum Bogoriense, National Research and Innovation Agency (BRIN), Cibinong, Indonesia
| | | | - Michael J. Andersen
- Museum of Southwestern Biology, University of New Mexico, Albuquerque, New Mexico, United States of America
| | - Jairo Arroyave
- Instituto de Biología, Universidad Nacional Autónoma de México, Mexico City, Mexico
| | - Christopher C. Austin
- Museum of Natural Science and Department of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana, United States of America
| | - F Keith Barker
- Bell Museum of Natural History, University of Minnesota, Saint Paul, Minnesota, United States of America
| | - Lisa N. Barrow
- Museum of Southwestern Biology, University of New Mexico, Albuquerque, New Mexico, United States of America
| | | | - John Bates
- Field Museum of Natural History, Chicago, Illinois, United States of America
| | - Aaron M. Bauer
- Department of Biology, Villanova University, Villanova, Pennsylvania, United States of America
| | - Kayce C. Bell
- Natural History Museum of Los Angeles County, Los Angeles, California, United States of America
| | - Rayna C. Bell
- California Academy of Sciences, San Francisco, California, United States of America
| | - Allison W. Bronson
- Biological Sciences, California State Polytechnic University, Humboldt, Arcata, California, United States of America
| | - Rafe M. Brown
- Biodiversity Institute and Natural History Museum, University of Kansas, Lawrence, Kansas, United States of America
| | - Frank T. Burbrink
- American Museum of Natural History, New York, New York, United States of America
| | - Kevin J. Burns
- Department of Biology, San Diego State University, San Diego, California, United States of America
| | | | - David C. Cannatella
- Biodiversity Center & Dept. of Integrative Biology, The University of Texas at Austin, Austin, Texas, United States of America
| | - Todd A. Castoe
- Department of Biology, University of Texas at Arlington, Arlington, Texas, United States of America
| | - Prosanta Chakrabarty
- Museum of Natural Science and Department of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana, United States of America
| | - Jocelyn P. Colella
- Biodiversity Institute and Natural History Museum, University of Kansas, Lawrence, Kansas, United States of America
| | - Joseph A. Cook
- Museum of Southwestern Biology, University of New Mexico, Albuquerque, New Mexico, United States of America
| | - Joel L. Cracraft
- American Museum of Natural History, New York, New York, United States of America
| | - Drew R. Davis
- Natural History Museum and Dept. of Biology, Eastern New Mexico University, Portales, New Mexico, United States of America
| | | | - Guillermo D’Elía
- Instituto de Cs. Ambientales y Evolutivas, Universidad Austral de Chile, Valdivia, Chile
| | - John P. Dumbacher
- California Academy of Sciences, San Francisco, California, United States of America
| | - Jonathan L. Dunnum
- Museum of Southwestern Biology, University of New Mexico, Albuquerque, New Mexico, United States of America
| | - Scott V. Edwards
- Museum of Comparative Zoology, Harvard University, Cambridge, Massachusetts, United States of America
| | - Jacob A. Esselstyn
- Museum of Natural Science and Department of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana, United States of America
| | - Julián Faivovich
- Museo Argentino de Ciencias Naturales “Bernardino Rivadavia", Buenos Aires, Argentina
| | - Jon Fjeldså
- Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark
| | | | - Kassandra Ford
- Bell Museum of Natural History, University of Minnesota, Saint Paul, Minnesota, United States of America
| | - Jérôme Fuchs
- ISYEB, Muséum national d’Histoire naturelle, Paris, France
| | - Matthew K. Fujita
- Department of Biology, University of Texas at Arlington, Arlington, Texas, United States of America
| | - Jeffrey M. Good
- Philip L. Wright Zoological Museum, University of Montana, Missoula, Montana, United States of America
| | - Eli Greenbaum
- Biodiversity Collections and Dept. of Biological Sciences, University of Texas at El Paso, El Paso, Texas, United States of America
| | - Harry W. Greene
- Biodiversity Center & Dept. of Integrative Biology, The University of Texas at Austin, Austin, Texas, United States of America
| | - Shannon Hackett
- Field Museum of Natural History, Chicago, Illinois, United States of America
| | - Amir Hamidy
- Museum Zoologicum Bogoriense, National Research and Innovation Agency (BRIN), Cibinong, Indonesia
| | - James Hanken
- Museum of Comparative Zoology, Harvard University, Cambridge, Massachusetts, United States of America
| | - Tri Haryoko
- Museum Zoologicum Bogoriense, National Research and Innovation Agency (BRIN), Cibinong, Indonesia
| | - Melissa TR Hawkins
- Smithsonian Institution, National Museum of Natural History, Washington, DC, United States of America
| | - Lawrence R. Heaney
- Field Museum of Natural History, Chicago, Illinois, United States of America
| | - David M. Hillis
- Biodiversity Center & Dept. of Integrative Biology, The University of Texas at Austin, Austin, Texas, United States of America
| | | | - Angela D. Hornsby
- Philip L. Wright Zoological Museum, University of Montana, Missoula, Montana, United States of America
| | - Peter A. Hosner
- Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark
| | - Mohammad Irham
- Museum Zoologicum Bogoriense, National Research and Innovation Agency (BRIN), Cibinong, Indonesia
| | - Sharon Jansa
- Bell Museum of Natural History, University of Minnesota, Saint Paul, Minnesota, United States of America
| | - Rosa Alicia Jiménez
- Escuela de Biología, Universidad de San Carlos de Guatemala, Ciudad de Guatemala, Guatemala
| | - Leo Joseph
- Australian National Wildlife Collection, CSIRO, Canberra, Australia
| | | | - Travis J. LaDuc
- Biodiversity Center & Dept. of Integrative Biology, The University of Texas at Austin, Austin, Texas, United States of America
| | - Adam D. Leaché
- Burke Museum, University of Washington, Seattle, Washington, United States of America
| | - Enrique P. Lessa
- Departamento de Ecología y Evolución, Universidad de la República, Montevideo, Uruguay
| | - Hernán López-Fernández
- Museum of Zoology, University of Michigan, Ann Arbor, Michigan, United States of America
| | - Nicholas A. Mason
- Museum of Natural Science and Department of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana, United States of America
| | - John E. McCormack
- Moore Laboratory of Zoology, Occidental College, Los Angeles, California, United States of America
| | - Caleb D. McMahan
- Field Museum of Natural History, Chicago, Illinois, United States of America
| | - Robert G. Moyle
- Biodiversity Institute and Natural History Museum, University of Kansas, Lawrence, Kansas, United States of America
| | - Ricardo A. Ojeda
- CONICET, Centro de Ciencia y Técnica Mendoza, Mendoza, Argentina
| | - Link E. Olson
- University of Alaska Museum, Fairbanks, Alaska, United States of America
| | | | - Lynne R. Parenti
- Smithsonian Institution, National Museum of Natural History, Washington, DC, United States of America
| | - Gabriela Parra-Olea
- Instituto de Biología, Universidad Nacional Autónoma de México, Mexico City, Mexico
| | - Bruce D. Patterson
- Field Museum of Natural History, Chicago, Illinois, United States of America
| | - Gregory B. Pauly
- Natural History Museum of Los Angeles County, Los Angeles, California, United States of America
| | - Silvia E. Pavan
- Biological Sciences, California State Polytechnic University, Humboldt, Arcata, California, United States of America
| | - A Townsend Peterson
- Biodiversity Institute and Natural History Museum, University of Kansas, Lawrence, Kansas, United States of America
| | - Steven Poe
- Museum of Southwestern Biology, University of New Mexico, Albuquerque, New Mexico, United States of America
| | - Daniel L. Rabosky
- Museum of Zoology, University of Michigan, Ann Arbor, Michigan, United States of America
| | | | - Sushma Reddy
- Bell Museum of Natural History, University of Minnesota, Saint Paul, Minnesota, United States of America
| | | | - Awal Riyanto
- Museum Zoologicum Bogoriense, National Research and Innovation Agency (BRIN), Cibinong, Indonesia
| | - Luiz A. Rocha
- California Academy of Sciences, San Francisco, California, United States of America
| | - Santiago R. Ron
- Museo de Zoología, Pontificia Universidad Católica del Ecuador, Quito, Ecuador
| | | | - Kevin C. Rowe
- Museums Victoria Research Institute, Melbourne, Australia
| | - Jodi Rowley
- Australian Museum Research Institute, Australian Museum, Sydney, Australia
| | - Sara Ruane
- Field Museum of Natural History, Chicago, Illinois, United States of America
| | | | - Allison J. Shultz
- Natural History Museum of Los Angeles County, Los Angeles, California, United States of America
| | - Brian Sidlauskas
- Dept. of Fisheries, Wildlife & Conservation Sciences, Oregon State University, Corvallis, Oregon, United States of America
| | - Derek S. Sikes
- University of Alaska Museum, Fairbanks, Alaska, United States of America
| | - Nancy B. Simmons
- American Museum of Natural History, New York, New York, United States of America
| | | | | | - Bryan L. Stuart
- North Carolina Museum of Natural Sciences, Raleigh, North Carolina, United States of America
| | - Adam P. Summers
- Friday Harbor Laboratories, University of Washington, Friday Harbor, Washington, United States of America
| | | | - Pablo Teta
- Museo Argentino de Ciencias Naturales “Bernardino Rivadavia", Buenos Aires, Argentina
| | - Cody W. Thompson
- Museum of Zoology, University of Michigan, Ann Arbor, Michigan, United States of America
| | - Robert M. Timm
- Biodiversity Institute and Natural History Museum, University of Kansas, Lawrence, Kansas, United States of America
| | | | - Gary Voelker
- Dept. Ecology and Conservation Biology, Texas A&M University, College Station, Texas, United States of America
| | - Robert S. Voss
- American Museum of Natural History, New York, New York, United States of America
| | - Kevin Winker
- University of Alaska Museum, Fairbanks, Alaska, United States of America
| | - Christopher Witt
- Museum of Southwestern Biology, University of New Mexico, Albuquerque, New Mexico, United States of America
| | - Elizabeth A. Wommack
- University of Wyoming Museum of Vertebrates, University of Wyoming, Laramie, Wyoming, United States of America
| | - Robert M. Zink
- University of Nebraska State Museum, Lincoln, Nebraska, United States of America
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8
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Byrne AQ. Response to "Specimen collection is essential for modern science". PLoS Biol 2023; 21:e3002390. [PMID: 37992044 PMCID: PMC10664869 DOI: 10.1371/journal.pbio.3002390] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2023] [Accepted: 10/17/2023] [Indexed: 11/24/2023] Open
Abstract
Natural history museums are vital repositories of specimens, samples and data that inform about the natural world; this Reply responds to a Formal Comment that queried whether it will ever be possible to completely do away with whole animal specimen collection, inviting open conversations about the ethical implications of specimen collection.
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Affiliation(s)
- Allison Q. Byrne
- Department of Environmental Science, Policy & Management, University of California, Berkeley, California, United States of America
- Museum of Vertebrate Zoology, University of California, Berkeley, California, Unites States of America
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9
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Ujszegi J, Boros Z, Fodor A, Vajna B, Hettyey A. Metabolites of Xenorhabdus bacteria are potent candidates for mitigating amphibian chytridiomycosis. AMB Express 2023; 13:88. [PMID: 37615904 PMCID: PMC10449739 DOI: 10.1186/s13568-023-01585-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2023] [Accepted: 07/20/2023] [Indexed: 08/25/2023] Open
Abstract
Chytridiomycosis, caused by the chytrid fungus Batrachochytrium dendrobatidis (Bd), has caused extreme losses in amphibian biodiversity. Finding bacteria that produce metabolites with antifungal properties may turn out to be invaluable in the fight against this devastating disease. The entomopathogenic bacteria, Xenorhabdus szentirmaii and X. budapestensis produce secondary metabolites that are effective against a wide range of fungal plant pathogens. To assess whether they may also be effective against Bd, we extracted cell-free culture media (CFCM) from liquid cultures of X. szentirmaii and X. budapestensis and tested their ability to inhibit Bd growth in vitro. As a second step, using juvenile common toads (Bufo bufo) experimentally infected with Bd we also tested the in vivo antifungal efficacy of X. szentirmaii CFCM diluted to 2 and 10% (v/v), while also assessing possible malign side effects on amphibians. Results of the in vitro experiment documented highly effective growth inhibition by CFCMs of both Xenorhabdus species. The in vivo experiment showed that treatment with CFCM of X. szentirmaii applied at a dilution of 10% resulted in infection intensities reduced by ca. 73% compared to controls and to juvenile toads treated with CFCM applied at a dilution of 2%. At the same time, we detected no negative side effects of treatment with CFCM on toad survival and development. Our results clearly support the idea that metabolites of X. szentirmaii, and perhaps of several other Xenorhabdus species as well, may prove highly useful for the treatment of Bd infected amphibians.
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Affiliation(s)
- János Ujszegi
- Department of Evolutionary Ecology, Plant Protection Institute, Centre for Agricultural Research, Eötvös Loránd Research Network, Budapest, Hungary.
- Department of Systematic Zoology and Ecology, Eötvös Loránd University, Budapest, Hungary.
| | - Zsófia Boros
- Department of Evolutionary Ecology, Plant Protection Institute, Centre for Agricultural Research, Eötvös Loránd Research Network, Budapest, Hungary
- Department of Genetics, Eötvös Loránd University, Budapest, Hungary
- Department of Microbiology, Eötvös Loránd University, Budapest, Hungary
| | - András Fodor
- Department of Genetics, Eötvös Loránd University, Budapest, Hungary
| | - Balázs Vajna
- Department of Microbiology, Eötvös Loránd University, Budapest, Hungary
| | - Attila Hettyey
- Department of Evolutionary Ecology, Plant Protection Institute, Centre for Agricultural Research, Eötvös Loránd Research Network, Budapest, Hungary
- Department of Systematic Zoology and Ecology, Eötvös Loránd University, Budapest, Hungary
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10
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Lundsgaard NU, Hird C, Doody KA, Franklin CE, Cramp RL. Carryover effects from environmental change in early life: An overlooked driver of the amphibian extinction crisis? GLOBAL CHANGE BIOLOGY 2023; 29:3857-3868. [PMID: 37310166 DOI: 10.1111/gcb.16726] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2023] [Accepted: 03/27/2023] [Indexed: 06/14/2023]
Abstract
Ecological carryover effects, or delayed effects of the environment on an organism's phenotype, are central predictors of individual fitness and a key issue in conservation biology. Climate change imposes increasingly variable environmental conditions that may be challenging to early life-history stages in animals with complex life histories, leading to detrimental physiological and fitness effects in later life. Yet, the latent nature of carryover effects, combined with the long temporal scales over which they can manifest, means that this phenomenon remains understudied and is often overlooked in short-term studies limited to single life-history stages. Herein, we review evidence for the physiological carryover effects induced by elevated ultraviolet radiation (UVR; 280-400 nm) as a potential contributor to recent amphibian population declines. UVR exposure causes a suite of molecular, cellular and physiological consequences known to underpin carryover effects in other taxa, but there is a lack of research linking embryonic and larval UVR exposures to fitness consequences post-metamorphosis in amphibians. We propose that the key impacts of UVR on disease-related amphibian declines are facilitated through carryover effects that bridge embryonic and larval UVR exposure with potential increased disease susceptibility post-metamorphosis. We conclude by identifying a practical direction for the study of ecological carryover effects in amphibians that could guide future ecological research in the broader field of conservation physiology. Only by addressing carryover effects can many of the mechanistic links between environmental change and population declines be elucidated.
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Affiliation(s)
- Niclas U Lundsgaard
- School of Biological Sciences, The University of Queensland, St Lucia, Australia
| | - Coen Hird
- School of Biological Sciences, The University of Queensland, St Lucia, Australia
| | - Kathleen A Doody
- School of Biological Sciences, The University of Queensland, St Lucia, Australia
| | - Craig E Franklin
- School of Biological Sciences, The University of Queensland, St Lucia, Australia
| | - Rebecca L Cramp
- School of Biological Sciences, The University of Queensland, St Lucia, Australia
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11
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Harding SF, Moretta‐Urdiales MDM, Nordmeyer SC, Wostl E, Rodriguez D. Leveraging preserved specimens of Nerodia to infer the spatiotemporal dynamics of Ophidiomyces ophidiicola via quantitative polymerase chain reaction. Ecol Evol 2023; 13:e9998. [PMID: 37082316 PMCID: PMC10111236 DOI: 10.1002/ece3.9998] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Revised: 03/09/2023] [Accepted: 03/27/2023] [Indexed: 04/22/2023] Open
Abstract
Ophidiomyces ophidiicola (Oo) is a fungal pathogen and the causative agent of ophidiomycosis that has affected multiple snake taxa across the United States, Europe, and Asia. Ophidiomycosis has often been referred to as an emerging infectious disease (EID); however, its status as an EID has recently come under debate. Oo infections have been confirmed in wild snake populations in Texas; however, it is unknown if the pathogen is novel (i.e., invasive) or endemic to the state. To address this knowledge gap, we conducted surveys for Oo among preserved Nerodia deposited at three university museums in Texas. First, we visually assessed snakes for signs of infection (SOI), and if SOI were present, we sampled the affected area. We then used quantitative polymerase chain reaction to diagnose the presence of Oo DNA on areas with SOI and used these data to evaluate spatiotemporal patterns of Oo prevalence. We also tested for significant spatial clusters of Oo infenction using a Bernoulli probability model as implemented in the program SatScan. We found that the proportion of snakes exhibiting SOI was constant over time while the prevalence of Oo DNA among those SOI increased across space and time. Within these data, we detected an incidence pattern consistent with an introduction and then spread. We detected six spatial clusters of Oo infection, although only one was significant. Our results support the hypothesis that Oo is an emerging, novel pathogen to Texas snakes. These data narrow the knowledge gap regarding the history of Oo infections in Texas and establish a historical record of confirmed Oo detections in several counties across the state. Thus, our results will guide future research to those areas with evidence of past Oo infections but lacking confirmation in contemporary hosts.
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Affiliation(s)
| | | | - Stephanie C. Nordmeyer
- Department of Molecular Immunology and MicrobiologyUniversity of Texas at San AntonioSan AntonioTexasUSA
| | - Elijah Wostl
- Department of Biological SciencesSt. Edward's UniversityAustinTexasUSA
| | - David Rodriguez
- Department of BiologyTexas State UniversitySan MarcosTexasUSA
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Ghose SL, Yap TA, Byrne AQ, Sulaeman H, Rosenblum EB, Chan-Alvarado A, Chaukulkar S, Greenbaum E, Koo MS, Kouete MT, Lutz K, McAloose D, Moyer AJ, Parra E, Portik DM, Rockney H, Zink AG, Blackburn DC, Vredenburg VT. Continent-wide recent emergence of a global pathogen in African amphibians. FRONTIERS IN CONSERVATION SCIENCE 2023. [DOI: 10.3389/fcosc.2023.1069490] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/17/2023] Open
Abstract
IntroductionEmerging infectious diseases are increasingly recognized as a global threat to wildlife. Pandemics in amphibians, caused by the fungal pathogen Batrachochytrium dendrobatidis (Bd), have resulted in biodiversity loss at a global scale. Genomic data suggest a complex evolutionary history of Bd lineages that vary in pathogenicity. Africa harbors a significant proportion of global amphibian biodiversity, and multiple Bd lineages are known to occur there; yet, despite the decline of many host species, there are currently no described Bd-epizootics. Here, we describe the historical and recent biogeographical spread of Bd and assess its risk to amphibians across the continent of Africa.MethodsWe provide a 165-year view of host-pathogen interactions by (i) employing a Bd assay to test 4,623 specimens (collected 1908–2013); (ii) compiling 12,297 published Bd records (collected 1852–2017); (iii) comparing the frequency of Bd-infected amphibians through time by both country and region; (iv) genotyping Bd lineages; (v) histologically identifying evidence of chytridiomycosis, and (vi) using a habitat suitability model to assess future Bd risk.ResultsWe found a pattern of Bd emergence beginning largely at the turn of the century. From 1852–1999, we found low Bd prevalence (3.2% overall) and limited geographic spread, but after 2000 we documented a sharp increase in prevalence (18.7% overall), wider geographic spread, and multiple Bd lineages that may be responsible for emergence in different regions. We found that Bd risk to amphibians was highest in much of eastern, central, and western Africa.DiscussionOur study documents a largely overlooked yet significant increase in a fungal pathogen that could pose a threat to amphibians across an entire continent. We emphasize the need to bridge historical and contemporary datasets to better describe and predict host-pathogen dynamics over larger temporal scales.
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Auliya M, Altherr S, Nithart C, Hughes A, Bickford D. Numerous uncertainties in the multifaceted global trade in frogs’ legs with the EU as the major consumer. NATURE CONSERVATION 2023. [DOI: 10.3897/natureconservation.51.93868] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/11/2023]
Abstract
The commercial trade in frogs and their body parts is global, dynamic and occurs in extremely large volumes (in the thousands of tonnes/yr or billions of frogs/yr). The European Union (EU) remains the single largest importer of frogs’ legs, with most frogs still caught from the wild. Amongst the many drivers of species extinction or population decline (e.g. due to habitat loss, climate change, disease etc.), overexploitation is becoming increasingly more prominent. Due to global declines and extinctions, new attention is being focused on these markets, in part to try to ensure sustainability. While the trade is plagued by daunting realities of data deficiency and uncertainty and the conflicts of commercial interests associated with these data, it is clear is that EU countries are most responsible for the largest portion of the international trade in frogs’ legs of wild species. Over decades of exploitation, the EU imports have contributed to a decline in wild frog populations in an increasing number of supplying countries, such as India and Bangladesh, as well as Indonesia, Turkey and Albania more recently. However, there have been no concerted attempts by the EU and present export countries to ensure sustainability of this trade. Further work is needed to validate species identities, secure data on wild frog populations, establish reasonable monitored harvest/export quotas and disease surveillance and ensure data integrity, quality and security standards for frog farms. Herein, we call upon those countries and their representative governments to assume responsibility for the sustainability of the trade. The EU should take immediate action to channel all imports through a single centralised database and list sensitive species in the Annexes of the EU Wildlife Trade Regulation. Further, listing in CITES (the Convention on International Trade in Endangered Species of Wild Fauna and Flora) can enforce international trade restrictions. More joint efforts are needed to improve regional monitoring schemes before the commercial trade causes irreversible extinctions of populations and species of frogs.
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Dehling DM, Dehling JM. Elevated alpha diversity in disturbed sites obscures regional decline and homogenization of amphibian taxonomic, functional and phylogenetic diversity. Sci Rep 2023; 13:1710. [PMID: 36720891 PMCID: PMC9889332 DOI: 10.1038/s41598-023-27946-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2022] [Accepted: 01/10/2023] [Indexed: 02/01/2023] Open
Abstract
Loss of natural habitat due to land-use change is one of the major threats to biodiversity worldwide. It not only affects the diversity of local species communities (alpha diversity) but can also lead to large-scale homogenization of community composition (reduced beta diversity) and loss of regional diversity (gamma diversity), but these effects are still rarely investigated. We assessed the impact of land-use change on taxonomic, functional and phylogenetic diversity of amphibians in Rwanda, both on the local (community-level) and regional scale (country-wide). Alpha diversity in local communities was higher in farmland than in natural habitats; however, species turnover among farmland sites was much lower than among natural sites, resulting in highly homogenized communities and reduced taxonomic, functional and phylogenetic gamma diversity in farmland across Rwanda. Amphibians found in farmland were mostly disturbance-tolerant species that are widespread in eastern Africa and beyond. In contrast, most of the regionally endemic frog species that make this region a continent-wide hotspot of amphibian diversity were found only in the natural habitats. Ongoing habitat conversion might result in further homogenization of amphibian communities across sub-Saharan Africa and the loss of regional endemism, unique evolutionary lineages, and multifunctionality.
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Affiliation(s)
- D Matthias Dehling
- Swiss Federal Research Institute WSL, 8903, Birmensdorf, Switzerland. .,Securing Antarctica's Environmental Future, School of Biological Sciences, Monash University, Victoria, 3800, Australia. .,Faculty of Environmental Sciences and Natural Resource Management, Norwegian University of Life Sciences (NMBU), 1432, Ås, Norway.
| | - J Maximilian Dehling
- Department of Biology, Institute of Integrated Natural Sciences, University of Koblenz, Koblenz, Germany.
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15
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Strachinis I, Marschang RE, Lymberakis P, Karagianni KM, Azmanis P. Infectious disease threats to amphibians in Greece: new localities positive for Batrachochytrium dendrobatidis. DISEASES OF AQUATIC ORGANISMS 2022; 152:127-138. [PMID: 36519684 DOI: 10.3354/dao03712] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
In the early 2000s, numerous cases of European amphibian population declines and mass die-offs started to emerge. Investigating those events led to the discovery that wild European amphibians were confronted with grave disease threats caused by introduced pathogens, namely the amphibian and the salamander chytrid fungi Batrachochytrium dendrobatidis (Bd) and B. salamandrivorans (Bsal) and ranaviruses. In Greece, Bd was previously documented among wild amphibian populations in 2 different locations and 3 different species. However, no disease-related mass declines or mortality events have been reported. In this work, we build upon previous findings with new, subsequently obtained data, resulting in a 225-sample dataset of 14 species from 17 different locations throughout Greece, in order to examine the occurrence status of all 3 pathogens responsible for emerging infectious diseases in European amphibians. No positive samples for Bsal or ranavirus were recorded in any location. We confirmed the presence of Bd in 4 more localities and in 4 more species, including 1 urodelan (Macedonian crested newt Triturus macedonicus) and 1 introduced anuran (American bullfrog Lithobates catesbeianus). All insular localities were negative for Bd, except for Crete, where Bd was identified in 2 different locations. Again, no mass declines or die-offs were recorded in any Bd-positive area or elsewhere. However, given the persistence of Bd across Greece over the past ~20 yr, monitoring efforts should continue, and ideally be further expanded.
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Affiliation(s)
- Ilias Strachinis
- Department of Genetics, Development and Molecular Biology, School of Biology, Faculty of Natural Sciences, Aristotle University of Thessaloniki, 54636, Greece
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16
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Lambertini C, Ernetti JR, Missassi AFR, Jorge RF, da Silva Leite D, Lima AP, Toledo LF. Chytrid fungus in amphibians from the lowland Brazilian Amazon. DISEASES OF AQUATIC ORGANISMS 2022; 152:115-125. [PMID: 36519683 DOI: 10.3354/dao03709] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Infectious diseases are one of the main threats to biodiversity. The fungus Batrachochytrium dendrobatidis (Bd) is associated with several amphibian losses around the globe, and environmental conditions may dictate the success of pathogen spread. The Brazilian Amazon has been considered climatically unsuitable for chytrid fungus, but additional information on Bd dynamics in this ecoregion is still lacking. We sampled 462 amphibians (449 anurans, 4 caudatans and 9 caecilians), representing 57 species from the Brazilian Amazon, and quantified Bd infections using qPCR. We tested whether abiotic variables predicted the risk of Bd infections, and tested for relationships between biotic variables and Bd. Finally, we experimentally tested the effects of Bd strains CLFT 156 and CLFT 102 (from the southern and northern Atlantic Forest, respectively) on Atelopus manauensis. We detected higher Bd prevalence than those previously reported for the Brazilian Amazon, and positive individuals in all 3 orders of amphibians sampled. Both biotic and abiotic predictors were related to prevalence, and no variable explained infection load. Moreover, we detected higher Bd prevalence in forested than open areas, while the host's reproductive biology was not a factor. We detected higher mortality in the experimental group infected with CLFT 156, probably because this strain was isolated from a region characterized by discrepant climatic conditions (latitudinally more distant) when compared with the host's sampling site in Amazon. The lowland Brazilian Amazon is still underexplored and future studies targeting all amphibian orders are essential to better understand Bd infection dynamics in this region.
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Affiliation(s)
- Carolina Lambertini
- Laboratório de História Natural de Anfíbios Brasileiros (LaHNAB), Departamento de Biologia Animal, Instituto de Biologia, Universidade Estadual de Campinas, Campinas, São Paulo 13083-862, Brazil
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17
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Bolom‐Huet R, Pineda E, Andrade‐Torres A, Díaz‐Fleischer F, Muñoz AL, Galindo‐González J. Chytrid prevalence and infection intensity in treefrogs from three environments with different degrees of conservation in Mexico. Biotropica 2022. [DOI: 10.1111/btp.13186] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- René Bolom‐Huet
- Centro de Investigaciones en Ciencias Biológicas Aplicadas Universidad Autónoma del Estado de México Toluca Estado de México Mexico
- Universidad Veracruzana – Instituto de Biotecnología y Ecología Aplicada (INBIOTECA) Xalapa, Veracruz Mexico
| | - Eduardo Pineda
- Instituto de Ecologia – Red de Biología y Conservación de Vertebrados Xalapa, Veracruz Mexico
| | - Antonio Andrade‐Torres
- Universidad Veracruzana – Instituto de Biotecnología y Ecología Aplicada (INBIOTECA) Xalapa, Veracruz Mexico
| | - Francisco Díaz‐Fleischer
- Universidad Veracruzana – Instituto de Biotecnología y Ecología Aplicada (INBIOTECA) Xalapa, Veracruz Mexico
| | - Antonio L. Muñoz
- ECOSUR – Conservación de la Biodiversidad San Cristobal de las Casas, Chiapas Mexico
| | - Jorge Galindo‐González
- Universidad Veracruzana – Instituto de Biotecnología y Ecología Aplicada (INBIOTECA) Xalapa, Veracruz Mexico
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Basanta MD, Avila-Akerberg V, Byrne AQ, Castellanos-Morales G, González Martínez TM, Maldonado-López Y, Rosenblum EB, Suazo-Ortuño I, Parra Olea G, Rebollar EA. The fungal pathogen Batrachochytrium salamandrivorans is not detected in wild and captive amphibians from Mexico. PeerJ 2022; 10:e14117. [PMID: 36213512 PMCID: PMC9536319 DOI: 10.7717/peerj.14117] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2022] [Accepted: 09/04/2022] [Indexed: 01/21/2023] Open
Abstract
The recent emergence of the pathogen Batrachochytrium salamandrivorans (Bsal) is associated with rapid population declines of salamanders in Europe and its arrival to new areas could cause dramatic negative effects on other amphibian populations and species. Amphibian species, present in areas with high amphibian diversity such as Mexico, could be highly threatened due to the arrival of Bsal, particularly salamander species which are more vulnerable to chytridiomycosis caused by this pathogen. Thus, immediate surveillance is needed as a strategy to efficiently contend with this emerging infectious disease. In this study, we analyzed 490 wild and captive amphibians from 48 species across 76 sites in the North, Central, and South of Mexico to evaluate the presence of Bsal. Amphibians were sampled in sites with variable degrees of amphibian richness and suitability for Bsal according to previous studies. From the 76 sampling sites, 10 of them were located in areas with high amphibian richness and potential moderate to high Bsal habitat suitability. We did not detect Bsal in any of the samples, and no signs of the disease were observed in any individual at the time of sampling. Our results suggest that Bsal has not yet arrived at the sampled sites or could be at low prevalence within populations with low occurrence probability. This is the first study that evaluates the presence of Bsal in different regions and amphibian species in Mexico, which is the second most diverse country in salamander species in the world. We highlight the risk and the importance of continuing surveillance of Bsal in Mexico and discuss control strategies to avoid the introduction and spread of Bsal in the country.
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Affiliation(s)
- M. Delia Basanta
- Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Cuernavaca, Morelos, Mexico,Facultad de Ciencias, Universidad Nacional Autónoma de México, Coyoacán, Ciudad de México, Mexico,Department of Biology, University of Nevada Reno, Reno, Nevada, United States of America
| | - Victor Avila-Akerberg
- Instituto de Ciencias Agropecuarias y Rurales, Universidad Autónoma del Estado de México, Toluca, Estado de México, Mexico
| | - Allison Q. Byrne
- Department of Environmental Science, Policy, and Management, University of California, Berkeley, CA, United States of America
| | - Gabriela Castellanos-Morales
- Departamento de Conservación de la Biodiversidad, Colegio de la Frontera Sur Unidad, Villahermosa, Tabasco, México
| | | | - Yurixhi Maldonado-López
- CONACYT-Instituto de Investigaciones sobre los Recursos Naturales, Universidad Michoacana de San Nicolás de Hidalgo, Morelia, Michoacán, Mexico
| | - Erica Bree Rosenblum
- Department of Environmental Science, Policy, and Management, University of California, Berkeley, CA, United States of America
| | - Ireri Suazo-Ortuño
- Instituto de Investigaciones sobre los Recursos Naturales, Universidad Michoacana de San Nicolás de Hidalgo, Morelia, Michoacán, Mexico
| | - Gabriela Parra Olea
- Instituto de Biología, Universidad Nacional Autónoma de México, Ciudad de México, Ciudad de México, Mexico
| | - Eria A. Rebollar
- Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Cuernavaca, Morelos, Mexico
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19
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Zumbado-Ulate H, Neam K, García-Rodríguez A, Ochoa-Ochoa L, Chaves G, Kolby JE, Granados-Martínez S, Hertz A, Bolaños F, Ariano-Sánchez D, Puschendorf R, Searle CL. Ecological correlates of extinction risk and persistence of direct-developing stream-dwelling frogs in Mesoamerica. Glob Ecol Conserv 2022. [DOI: 10.1016/j.gecco.2022.e02197] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022] Open
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20
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Schmeller DS, Cheng T, Shelton J, Lin CF, Chan-Alvarado A, Bernardo-Cravo A, Zoccarato L, Ding TS, Lin YP, Swei A, Fisher MC, Vredenburg VT, Loyau A. Environment is associated with chytrid infection and skin microbiome richness on an amphibian rich island (Taiwan). Sci Rep 2022; 12:16456. [PMID: 36180528 PMCID: PMC9525630 DOI: 10.1038/s41598-022-20547-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2021] [Accepted: 09/14/2022] [Indexed: 11/09/2022] Open
Abstract
Growing evidence suggests that the origins of the panzootic amphibian pathogens Batrachochytrium dendrobatidis (Bd) and Batrachochytrium salamandrivorans (Bsal) are in Asia. In Taiwan, an island hotspot of high amphibian diversity, no amphibian mass mortality events linked to Bd or Bsal have been reported. We conducted a multi-year study across this subtropical island, sampling 2517 individuals from 30 species at 34 field sites, between 2010 and 2017, and including 171 museum samples collected between 1981 and 2009. We analyzed the skin microbiome of 153 samples (6 species) from 2017 in order to assess any association between the amphibian skin microbiome and the probability of infection amongst different host species. We did not detect Bsal in our samples, but found widespread infection by Bd across central and northern Taiwan, both taxonomically and spatially. Museum samples show that Bd has been present in Taiwan since at least 1990. Host species, geography (elevation), climatic conditions and microbial richness were all associated with the prevalence of infection. Host life-history traits, skin microbiome composition and phylogeny were associated with lower prevalence of infection for high altitude species. Overall, we observed low prevalence and burden of infection in host populations, suggesting that Bd is enzootic in Taiwan where it causes subclinical infections. While amphibian species in Taiwan are currently threatened by habitat loss, our study indicates that Bd is in an endemic equilibrium with the populations and species we investigated. However, ongoing surveillance of the infection is warranted, as changing environmental conditions may disturb the currently stable equilibrium.
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Affiliation(s)
- Dirk S. Schmeller
- grid.15781.3a0000 0001 0723 035XLaboratoire Ecologie Fonctionnelle et Environnement, Université de Toulouse, INPT, UPS, Toulouse, France
| | - Tina Cheng
- grid.263091.f0000000106792318Department of Biology, San Francisco State University, 1600 Holloway Ave, San Francisco, CA 94132 USA ,grid.421477.30000 0004 0639 1575Bat Conservation International, Washington, DC USA
| | - Jennifer Shelton
- grid.7445.20000 0001 2113 8111Department of Infectious Disease Epidemiology, Imperial College London, London, W2 1PG UK
| | - Chun-Fu Lin
- Zoology Division, Endemic Species Research Institute, Jiji, Nantou Taiwan, ROC
| | - Alan Chan-Alvarado
- grid.263091.f0000000106792318Department of Biology, San Francisco State University, 1600 Holloway Ave, San Francisco, CA 94132 USA
| | - Adriana Bernardo-Cravo
- grid.15781.3a0000 0001 0723 035XLaboratoire Ecologie Fonctionnelle et Environnement, Université de Toulouse, INPT, UPS, Toulouse, France
| | - Luca Zoccarato
- grid.419247.d0000 0001 2108 8097Department of Experimental Limnology, Leibniz-Institute of Freshwater Ecology and Inland Fisheries (IGB), Alte Fischerhütte 2, 16775 Stechlin, Germany
| | - Tzung-Su Ding
- grid.19188.390000 0004 0546 0241School of Forestry and Resource Conservation, National Taiwan University, Taipei City, 106 Taiwan, ROC
| | - Yu-Pin Lin
- grid.19188.390000 0004 0546 0241Department of Bioenvironmental Systems Engineering, National Taiwan University, Taipei, Taiwan, ROC
| | - Andrea Swei
- grid.263091.f0000000106792318Department of Biology, San Francisco State University, 1600 Holloway Ave, San Francisco, CA 94132 USA
| | - Matthew C. Fisher
- grid.7445.20000 0001 2113 8111Department of Infectious Disease Epidemiology, Imperial College London, London, W2 1PG UK
| | - Vance T. Vredenburg
- grid.263091.f0000000106792318Department of Biology, San Francisco State University, 1600 Holloway Ave, San Francisco, CA 94132 USA ,grid.47840.3f0000 0001 2181 7878Museum of Vertebrate Zoology, University of California Berkeley, Berkeley, CA 94720 USA
| | - Adeline Loyau
- grid.15781.3a0000 0001 0723 035XLaboratoire Ecologie Fonctionnelle et Environnement, Université de Toulouse, INPT, UPS, Toulouse, France ,grid.419247.d0000 0001 2108 8097Department of Experimental Limnology, Leibniz-Institute of Freshwater Ecology and Inland Fisheries (IGB), Alte Fischerhütte 2, 16775 Stechlin, Germany
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21
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Salazar-Hamm PS, Montoya KN, Montoya L, Cook K, Liphardt S, Taylor JW, Cook JA, Natvig DO. Breathing can be dangerous: Opportunistic fungal pathogens and the diverse community of the small mammal lung mycobiome. FRONTIERS IN FUNGAL BIOLOGY 2022; 3:996574. [PMID: 37746221 PMCID: PMC10512277 DOI: 10.3389/ffunb.2022.996574] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/17/2022] [Accepted: 08/24/2022] [Indexed: 09/26/2023]
Abstract
Human lung mycobiome studies typically sample bronchoalveolar lavage or sputum, potentially overlooking fungi embedded in tissues. Employing ultra-frozen lung tissues from biorepositories, we obtained fungal ribosomal RNA ITS2 sequences from 199 small mammals across 39 species. We documented diverse fungi, including common environmental fungi such as Penicillium and Aspergillus, associates of the human mycobiome such as Malassezia and Candida, and others specifically adapted for lungs (Coccidioides, Blastomyces, and Pneumocystis). Pneumocystis sequences were detected in 83% of the samples and generally exhibited phylogenetic congruence with hosts. Among sequences from diverse opportunistic pathogens in the Onygenales, species of Coccidioides occurred in 12% of samples and species of Blastomyces in 85% of samples. Coccidioides sequences occurred in 14 mammalian species. The presence of neither Coccidioides nor Aspergillus fumigatus correlated with substantial shifts in the overall mycobiome, although there was some indication that fungal communities might be influenced by high levels of A. fumigatus. Although members of the Onygenales were common in lung samples (92%), they are not common in environmental surveys. Our results indicate that Pneumocystis and certain Onygenales are common commensal members of the lung mycobiome. These results provide new insights into the biology of lung-inhabiting fungi and flag small mammals as potential reservoirs for emerging fungal pathogens.
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Affiliation(s)
| | - Kyana N. Montoya
- Department of Biology, University of New Mexico, Albuquerque, NM, United States
| | - Liliam Montoya
- Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA, United States
| | - Kel Cook
- Department of Biology, University of New Mexico, Albuquerque, NM, United States
| | - Schuyler Liphardt
- Department of Biology, University of New Mexico, Albuquerque, NM, United States
| | - John W. Taylor
- Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA, United States
| | - Joseph A. Cook
- Department of Biology, University of New Mexico, Albuquerque, NM, United States
- Museum of Southwestern Biology, University of New Mexico, Albuquerque, NM, United States
| | - Donald O. Natvig
- Department of Biology, University of New Mexico, Albuquerque, NM, United States
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22
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Moubarak M, Fischhoff IR, Han BA, Castellanos AA. A spatially explicit risk assessment of salamander populations to
Batrachochytrium salamandrivorans
in the United States. DIVERS DISTRIB 2022. [DOI: 10.1111/ddi.13627] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022] Open
Affiliation(s)
| | | | - Barbara A. Han
- Cary Institute of Ecosystem Studies Millbrook New York USA
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23
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Bolton RL, Mooney A, Pettit MT, Bolton AE, Morgan L, Drake GJ, Appeltant R, Walker SL, Gillis JD, Hvilsom C. Resurrecting biodiversity: advanced assisted reproductive technologies and biobanking. REPRODUCTION AND FERTILITY 2022; 3:R121-R146. [PMID: 35928671 PMCID: PMC9346332 DOI: 10.1530/raf-22-0005] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2022] [Accepted: 06/30/2022] [Indexed: 11/21/2022] Open
Abstract
Biodiversity is defined as the presence of a variety of living organisms on the Earth that is essential for human survival. However, anthropogenic activities are causing the sixth mass extinction, threatening even our own species. For many animals, dwindling numbers are becoming fragmented populations with low genetic diversity, threatening long-term species viability. With extinction rates 1000–10,000 times greater than natural, ex situ and in situ conservation programmes need additional support to save species. The indefinite storage of cryopreserved (−196°C) viable cells and tissues (cryobanking), followed by assisted or advanced assisted reproductive technology (ART: utilisation of oocytes and spermatozoa to generate offspring; aART: utilisation of somatic cell genetic material to generate offspring), may be the only hope for species’ long-term survival. As such, cryobanking should be considered a necessity for all future conservation strategies. Following cryopreservation, ART/aART can be used to reinstate lost genetics back into a population, resurrecting biodiversity. However, for this to be successful, species-specific protocol optimisation and increased knowledge of basic biology for many taxa are required. Current ART/aART is primarily focused on mammalian taxa; however, this needs to be extended to all, including to some of the most endangered species: amphibians. Gamete, reproductive tissue and somatic cell cryobanking can fill the gap between losing genetic diversity today and future technological developments. This review explores species prioritisation for cryobanking and the successes and challenges of cryopreservation and multiple ARTs/aARTs. We here discuss the value of cryobanking before more species are lost and the potential of advanced reproductive technologies not only to halt but also to reverse biodiversity loss.
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Affiliation(s)
- Rhiannon L Bolton
- Nature’s SAFE, Chapel Field Stud, Ash Lane, Whitchurch, Shropshire, UK
| | | | - Matt T Pettit
- Nature’s SAFE, Chapel Field Stud, Ash Lane, Whitchurch, Shropshire, UK
- IMT International Limited, Tattenhall, Chester, UK
| | - Anthony E Bolton
- Nature’s SAFE, Chapel Field Stud, Ash Lane, Whitchurch, Shropshire, UK
| | - Lucy Morgan
- Gemini Genetics, Chapel Field Stud, Ash Lane, Whitchurch, UK
| | | | - Ruth Appeltant
- Nuffield Department of Women’s and Reproductive Health, University of Oxford, Women’s Centre, Level 3, John Radcliffe Hospital, Oxford, UK
| | - Susan L Walker
- Nature’s SAFE, Chapel Field Stud, Ash Lane, Whitchurch, Shropshire, UK
- Chester Zoo, Upton-by-Chester, UK
| | - James D Gillis
- South-East Zoo Alliance for Reproduction & Conservation, Yulee, Florida, USA
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24
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García-Sánchez JC, Arredondo-Centeno J, Segovia-Ramírez MG, Tenorio Olvera AM, Parra-Olea G, Vredenburg VT, Rovito SM. Factors Influencing Bacterial and Fungal Skin Communities of Montane Salamanders of Central Mexico. MICROBIAL ECOLOGY 2022:10.1007/s00248-022-02049-x. [PMID: 35705744 DOI: 10.1007/s00248-022-02049-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2021] [Accepted: 05/20/2022] [Indexed: 06/15/2023]
Abstract
Host microbial communities are increasingly seen as an important component of host health. In amphibians, the first land vertebrates that are threatened by a fungal skin disease globally, our understanding of the factors influencing the microbiome of amphibian skin remains incomplete because recent studies have focused almost exclusively on bacteria, and little information exists on fungal communities associated with wild amphibian species. In this study, we describe the effects of host phylogeny, climate, geographic distance, and infection with a fungal pathogen on the composition and structure of bacterial and fungal communities in seven tropical salamander species that occur in the Trans-Mexican Volcanic Belt of Central Mexico. We find that host phylogenetic relatedness is correlated with bacterial community composition while a composite climatic variable of temperature seasonality and precipitation is significantly associated with fungal community composition. We also estimated co-occurrence networks for bacterial and fungal taxa and found differences in the degree of connectivity and the distribution of negative associations between the two networks. Our results suggest that different factors may be responsible for structuring the bacterial and fungal communities of amphibian skin and that the inclusion of fungi in future studies could shed light on important functional interactions within the microbiome.
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Affiliation(s)
- Julio César García-Sánchez
- Unidad de Genómica Avanzada, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Irapuato, Guanajuato, México
| | - José Arredondo-Centeno
- Unidad de Genómica Avanzada, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Irapuato, Guanajuato, México
- Instituto Tecnológico Superior de Irapuato, Irapuato, Guanajuato, México
| | - María Guadalupe Segovia-Ramírez
- Unidad de Genómica Avanzada, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Irapuato, Guanajuato, México
| | - Ariadna Marcela Tenorio Olvera
- Unidad de Genómica Avanzada, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Irapuato, Guanajuato, México
- Instituto Tecnológico Superior de Irapuato, Irapuato, Guanajuato, México
| | - Gabriela Parra-Olea
- Instituto de Biología, Universidad Nacional Autónoma de México, Ciudad de Mexico, México
| | - Vance T Vredenburg
- Department of Biology, San Francisco State University, San Francisco, CA, USA
- Museum of Vertebrate Zoology, University of California, Berkeley, CA, USA
| | - Sean M Rovito
- Unidad de Genómica Avanzada, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Irapuato, Guanajuato, México.
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25
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McCarthy K, Shinn O, Luna-Reyes R, Mendelson III JR. A redescription of the poorly known Central American toad Inciliustacanensis (Anura, Bufonidae), with a summary of its biology and conservation status. Zookeys 2022; 1102:149-161. [PMID: 36761155 PMCID: PMC9848913 DOI: 10.3897/zookeys.1102.79229] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2021] [Accepted: 04/18/2022] [Indexed: 11/12/2022] Open
Abstract
Based on examination of most of the existing museum specimens of the rare bufonid frog Inciliustacanensis, we present a redescription and new diagnosis for this species. The species is limited to small region of the Pacific chain of volcanoes in southeastern Chiapas, Mexico, and adjacent areas of Guatemala. The species has not been observed in the wild since 1984 and may have been reduced or eliminated by regional epidemics of chytridiomycosis.
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Affiliation(s)
- Kathryn McCarthy
- School of Biological Sciences, Georgia Institute of Technology, 950 Atlantic Dr NW, Atlanta, Georgia, 30332, USAGeorgia Institute of TechnologyAtlantaUnited States of America
| | - Ollie Shinn
- School of Biological Sciences, Georgia Institute of Technology, 950 Atlantic Dr NW, Atlanta, Georgia, 30332, USAGeorgia Institute of TechnologyAtlantaUnited States of America
| | - Roberto Luna-Reyes
- Dirección de Áreas Naturales y Vida Silvestre, Secretaría de Medio Ambiente e Historia Natural, Calzada de las Personas Ilustres s/n, Colonia Centro, Tuxtla Gutiérrez, 29000, Chiapas, MexicoSecretaría de Medio Ambiente e Historia NaturalTuxtla GutiérrezMexico
| | - Joseph R. Mendelson III
- School of Biological Sciences, Georgia Institute of Technology, 950 Atlantic Dr NW, Atlanta, Georgia, 30332, USAGeorgia Institute of TechnologyAtlantaUnited States of America,Zoo Atlanta, 800 Cherokee Ave SE, Atlanta, Georgia, 30315, USASecretaría de Medio Ambiente e Historia NaturalAtlantaUnited States of America
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26
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Dunlop JA, Watson MJ. The hitchhiker's guide to Australian conservation: A parasitological perspective on fauna translocations. AUSTRAL ECOL 2022. [DOI: 10.1111/aec.13171] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Judy A. Dunlop
- School of Agriculture and Environment University of Western Australia Perth Western Australia Australia
- Western Australian Feral Cat Working Group Perth Western Australia Australia
- Institute for Land, Water & Society Charles Sturt University Albury New South Wales Australia
- Western Australian Biodiversity Science Institute 2/133 St George's Terrace Perth Western Australia 6000 Australia
| | - Maggie J. Watson
- Institute for Land, Water & Society Charles Sturt University Albury New South Wales Australia
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27
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Zhang L, Liu G, Xia T, Yang X, Sun G, Zhao C, Xu C, Zhang H. Evolution of toll-like receptor gene family in amphibians. Int J Biol Macromol 2022; 208:463-474. [PMID: 35337917 DOI: 10.1016/j.ijbiomac.2022.03.112] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2021] [Revised: 02/09/2022] [Accepted: 03/17/2022] [Indexed: 12/24/2022]
Abstract
The evolutionary position and lifestyle of amphibians highlights the important roles of the immune system in adaptive radiation and their adaptation to a complex pathogenic environment. Toll-like receptors (TLRs) are membrane-like sensors that recognize and bind conserved molecular motifs in pathogens to initiate downstream immune responses. To understand the evolutionary patterns of TLRs in amphibians, we analyzed TLR genes from the genomes and transcriptomes of 102 amphibian species. Phylogenetic results showed that 578 intact amphibian TLR sequences belonged to 16 TLR genes and were divided into seven subfamilies. The TLR4 subfamily was only identified in the Anura. Purification selection plays a leading role in amphibian TLR evolution and mean ω (dN/dS) values ranged from 0.252 for TLR7 to 0.381 for TLR19. Furthermore, the ω values of different domains were significantly different. We found positive selection patterns for 141 of 12,690 codons (1.1%) in all amphibian TLRs, most of which were located in leucine-rich repeats (LRRs). We also observed low to moderate levels of single-nucleotide polymorphisms (SNPs) in Pelophylax nigromaculatus and Bombina orientalis. This study provided critical primers, meaningful information regarding TLR gene family evolution in amphibians, and insights into the complex evolutionary patterns and implications of TLR polymorphisms.
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Affiliation(s)
- Lei Zhang
- College of Life Science, Qufu Normal University, Qufu, Shandong 273165, China
| | - Guangshuai Liu
- College of Life Science, Qufu Normal University, Qufu, Shandong 273165, China
| | - Tian Xia
- College of Life Science, Qufu Normal University, Qufu, Shandong 273165, China
| | - Xiufeng Yang
- College of Life Science, Qufu Normal University, Qufu, Shandong 273165, China
| | - Guolei Sun
- College of Life Science, Qufu Normal University, Qufu, Shandong 273165, China
| | - Chao Zhao
- College of Life Science, Qufu Normal University, Qufu, Shandong 273165, China
| | - Chunzhu Xu
- College of Life Science, Northeast Agricultural University, Harbin 150030, China.
| | - Honghai Zhang
- College of Life Science, Qufu Normal University, Qufu, Shandong 273165, China.
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28
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Adams AJ, Peralta-García A, Flores-López CA, Valdez-Villavicencio JH, Briggs CJ. High fungal pathogen loads and prevalence in Baja California amphibian communities: The importance of species, elevation, and historical context. Glob Ecol Conserv 2022. [DOI: 10.1016/j.gecco.2021.e01968] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022] Open
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29
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Cowgill M, Zink AG, Sparagon W, Yap TA, Sulaeman H, Koo MS, Vredenburg VT. Social Behavior, Community Composition, Pathogen Strain, and Host Symbionts Influence Fungal Disease Dynamics in Salamanders. Front Vet Sci 2021; 8:742288. [PMID: 34938792 PMCID: PMC8687744 DOI: 10.3389/fvets.2021.742288] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2021] [Accepted: 10/06/2021] [Indexed: 11/29/2022] Open
Abstract
The emerging fungal pathogen, Batrachochytrium dendrobatidis (Bd), which can cause a fatal disease called chytridiomycosis, is implicated in the collapse of hundreds of host amphibian species. We describe chytridiomycosis dynamics in two co-occurring terrestrial salamander species, the Santa Lucia Mountains slender salamander, Batrachoseps luciae, and the arboreal salamander, Aneides lugubris. We (1) conduct a retrospective Bd-infection survey of specimens collected over the last century, (2) estimate present-day Bd infections in wild populations, (3) use generalized linear models (GLM) to identify biotic and abiotic correlates of infection risk, (4) investigate susceptibility of hosts exposed to Bd in laboratory trials, and (5) examine the ability of host skin bacteria to inhibit Bd in culture. Our historical survey of 2,866 specimens revealed that for most of the early 20th century (~1920–1969), Bd was not detected in either species. By the 1990s the proportion of infected specimens was 29 and 17% (B. luciae and A. lugubris, respectively), and in the 2010s it was 10 and 17%. This was similar to the number of infected samples from contemporary populations (2014–2015) at 10 and 18%. We found that both hosts experience signs of chytridiomycosis and suffered high Bd-caused mortality (88 and 71% for B. luciae and A. lugubris, respectively). Our GLM revealed that Bd-infection probability was positively correlated with intraspecific group size and proximity to heterospecifics but not to abiotic factors such as precipitation, minimum temperature, maximum temperature, mean temperature, and elevation, or to the size of the hosts. Finally, we found that both host species contain symbiotic skin-bacteria that inhibit growth of Bd in laboratory trials. Our results provide new evidence consistent with other studies showing a relatively recent Bd invasion of amphibian host populations in western North America and suggest that the spread of the pathogen may be enabled both through conspecific and heterospecific host interactions. Our results suggest that wildlife disease studies should assess host-pathogen dynamics that consider the interactions and effects of multiple hosts, as well as the historical context of pathogen invasion, establishment, and epizootic to enzootic transitions to better understand and predict disease dynamics.
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Affiliation(s)
- Mae Cowgill
- Department of Biology, San Francisco State University, San Francisco, CA, United States
| | - Andrew G Zink
- Department of Biology, San Francisco State University, San Francisco, CA, United States
| | - Wesley Sparagon
- Daniel K. Inouye Center for Microbial Oceanography: Research and Education, Department of Oceanography and Sea Grant College Program, UUniversity of Hawai'i at Mānoa, HI, United States
| | - Tiffany A Yap
- Center for Biological Diversity, Oakland, CA, United States
| | - Hasan Sulaeman
- Department of Biology, San Francisco State University, San Francisco, CA, United States
| | - Michelle S Koo
- Museum of Vertebrate Zoology, University of California, Berkeley, Berkeley, CA, United States
| | - Vance T Vredenburg
- Department of Biology, San Francisco State University, San Francisco, CA, United States.,Museum of Vertebrate Zoology, University of California, Berkeley, Berkeley, CA, United States
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30
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García‐Rodríguez A, Basanta MD, García‐Castillo MG, Zumbado‐Ulate H, Neam K, Rovito S, Searle CL, Parra‐Olea G. Anticipating the potential impacts of
Batrachochytrium salamandrivorans
on Neotropical salamander diversity. Biotropica 2021. [DOI: 10.1111/btp.13042] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Adrián García‐Rodríguez
- Departamento de Zoología Instituto de Biología Universidad Nacional Autónoma de México Ciudad de México México
- BioInvasions, Global Change, Macroecology‐Group Department of Botany and Biodiversity Research University of Vienna Vienna Austria
| | - M. Delia Basanta
- Departamento de Zoología Instituto de Biología Universidad Nacional Autónoma de México Ciudad de México México
- Centro de Ciencias Genómicas Universidad Nacional Autónoma de México Cuernavaca Morelos México
| | - Mirna G. García‐Castillo
- Universidad Politécnica de Huatusco Huatusco Veracruz México
- Facultad de Ciencias Biológicas y Agropecuarias Región: Orizaba–Córdoba Universidad Veracruzana Amatlán de los Reyes Veracruz México
| | | | - Kelsey Neam
- Global Wildlife Conservation Austin Texas USA
- Amphibian Specialist Group IUCN Species Survival Commission USA
| | - Sean Rovito
- Unidad de Genómica Avanzada (Langebio) CINVESTAV Irapuato México
| | - Catherine L. Searle
- Department of Biological Sciences Purdue University West Lafayette Indiana USA
| | - Gabriela Parra‐Olea
- Departamento de Zoología Instituto de Biología Universidad Nacional Autónoma de México Ciudad de México México
- Amphibian Specialist Group IUCN Species Survival Commission USA
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31
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Koo MS, Vredenburg VT, Deck JB, Olson DH, Ronnenberg KL, Wake DB. Tracking, Synthesizing, and Sharing Global Batrachochytrium Data at AmphibianDisease.org. Front Vet Sci 2021; 8:728232. [PMID: 34692807 PMCID: PMC8527349 DOI: 10.3389/fvets.2021.728232] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2021] [Accepted: 09/02/2021] [Indexed: 11/13/2022] Open
Abstract
Emerging infectious diseases have been especially devastating to amphibians, the most endangered class of vertebrates. For amphibians, the greatest disease threat is chytridiomycosis, caused by one of two chytridiomycete fungal pathogens Batrachochytrium dendrobatidis (Bd) and Batrachochytrium salamandrivorans (Bsal). Research over the last two decades has shown that susceptibility to this disease varies greatly with respect to a suite of host and pathogen factors such as phylogeny, geography (including abiotic factors), host community composition, and historical exposure to pathogens; yet, despite a growing body of research, a comprehensive understanding of global chytridiomycosis incidence remains elusive. In a large collaborative effort, Bd-Maps was launched in 2007 to increase multidisciplinary investigations and understanding using compiled global Bd occurrence data (Bsal was not discovered until 2013). As its database functions aged and became unsustainable, we sought to address critical needs utilizing new technologies to meet the challenges of aggregating data to facilitate research on both Bd and Bsal. Here, we introduce an advanced central online repository to archive, aggregate, and share Bd and Bsal data collected from around the world. The Amphibian Disease Portal (https://amphibiandisease.org) addresses several critical community needs while also helping to build basic biological knowledge of chytridiomycosis. This portal could be useful for other amphibian diseases and could also be replicated for uses with other wildlife diseases. We show how the Amphibian Disease Portal provides: (1) a new repository for the legacy Bd-Maps data; (2) a repository for sample-level data to archive datasets and host published data with permanent DOIs; (3) a flexible framework to adapt to advances in field, laboratory, and informatics technologies; and (4) a global aggregation of Bd and Bsal infection data to enable and accelerate research and conservation. The new framework for this project is built using biodiversity informatics best practices and metadata standards to ensure scientific reproducibility and linkages across other biological and biodiversity repositories.
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Affiliation(s)
- Michelle S Koo
- Museum of Vertebrate Zoology, University of California, Berkeley, Berkeley, CA, United States
| | - Vance T Vredenburg
- Museum of Vertebrate Zoology, University of California, Berkeley, Berkeley, CA, United States.,Department of Biology, San Francisco State University, San Francisco, CA, United States
| | - John B Deck
- Berkeley Natural History Museums, University of California, Berkeley, Berkeley, CA, United States
| | - Deanna H Olson
- US Department of Agriculture, Forest Service, Pacific Northwest Research Station, Corvallis, OR, United States
| | - Kathryn L Ronnenberg
- US Department of Agriculture, Forest Service, Pacific Northwest Research Station, Corvallis, OR, United States
| | - David B Wake
- Museum of Vertebrate Zoology, University of California, Berkeley, Berkeley, CA, United States
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Vasconcelos IAD, Souza JOD, de Castro JS, Santana CJCD, Magalhães ACM, Castro MDS, Pires Júnior OR. Salamanders and caecilians, neglected from the chemical point of view. TOXIN REV 2021. [DOI: 10.1080/15569543.2021.1977326] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
| | | | | | - Carlos José Correia de Santana
- Department of Physiological Sciences, University of Brasilia, Brasilia, Brazil
- Department of Cell Biology, University of Brasilia, Brasilia, Brazil
| | | | - Mariana de Souza Castro
- Department of Physiological Sciences, University of Brasilia, Brasilia, Brazil
- Department of Cell Biology, University of Brasilia, Brasilia, Brazil
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33
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Social group size influences pathogen transmission in salamanders. Behav Ecol Sociobiol 2021. [DOI: 10.1007/s00265-021-03057-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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34
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Villamizar-Gomez A, Wang HH, Peterson MR, Grant WE, Forstner MRJ. Environmental determinants of Batrachochytrium dendrobatidis and the likelihood of further dispersion in the face of climate change in Texas, USA. DISEASES OF AQUATIC ORGANISMS 2021; 146:29-39. [PMID: 34498608 DOI: 10.3354/dao03613] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
One of the major drivers of amphibian population declines is Batrachochytrium dendrobatidis (Bd). We sought to identify the major environmental drivers of Bd prevalence in Texas, USA, by drawing results from museum specimens. We sampled one of the largest museum collections in Texas, the Biodiversity Research and Teaching Collections at Texas A&M University. Our sampling focused on the 9 amphibian species with the widest geographical distribution within the state, where we sub-sampled 30% of each species per decade from 1930 to present via skin swabs, totaling 1501 independent sampling events, and used quantitative real-time PCR (qPCR) to detect pathogen presence. We analyzed several geo-referenced variables describing climatic conditions to identify potential factors influencing the likelihood of presence of Bd using boosted regression trees. Our final model suggests the most influential variables are mean temperature of driest quarter, annual mean temperature, temperature annual range, and mean diurnal range. The most likely suitable range for Bd is currently found in the Blackland Prairie and Cross Timbers ecoregions. Results of our future (to the year 2040) projections suggest that Bd could expand its current distribution. Our model could play an important role when developing an integrated conservation plan through (1) focusing future field work on locations with a high likelihood of presence, (2) assisting in the choice of locations for restoration, and (3) developing future research plans including those necessary for projecting reactions to climate change. Our model also could integrate new presence data of Bd when they become available to enhance prediction precision.
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35
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Retuci Pontes M, Bardier C, Medina D, Pereira G, Lambertini C, Toledo LF. Seasonal variation of Batrachochytrium dendrobatidis in a threatened anuran species from Uruguay. DISEASES OF AQUATIC ORGANISMS 2021; 145:79-88. [PMID: 34137378 DOI: 10.3354/dao03603] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Chytridiomycosis, an emergent infectious disease caused by the fungus Batrachochytrium dendrobatidis (Bd), is considered one of the drivers of the current amphibian biodiversity loss. To inform endangered species conservation efforts, it is essential to improve our knowledge about the abiotic and biotic factors that influence Bd infection dynamics in the wild. Here, we analyzed variation of Bd infection in the redbelly toad Melanophryniscus montevidensis, a threatened bufonid from Uruguay. We tested the influence of temperature, precipitation, season, and host population size on Bd prevalence and intensity. Additionally, considering the sub-lethal effects of Bd, we tested if these variables, potentially through their effect on Bd, also explain the variation in host body condition. We determined a high Bd prevalence of 41% (100/241), and that population size influenced both Bd prevalence and infection intensity. We identified an effect of precipitation and season on Bd infection intensity and an effect of season on toad body condition. In addition, we found a negative effect of infection intensity on body condition; moreover, while some toads cleared the infection, their body condition did not improve, suggesting a long-term cost. This is the first report on host population size as an important factor in Bd infection dynamics in a threatened anuran species, and seasonal demographic changes appear to play an important role in the dynamics. Finally, we highlight the need for monitoring Bd in this and other endangered amphibian populations, especially those within the genus Melanophryniscus, which includes several Endangered and Data Deficient species in South America.
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Affiliation(s)
- Mariana Retuci Pontes
- Laboratório de História Natural de Anfíbios Brasileiros (LaHNAB), Departamento de Biologia Animal, Instituto de Biologia, Universidade Estadual de Campinas, Campinas, SP 13083-862, Brazil
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36
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Asymmetry in the frequency and proportion of arm truncation in three sympatric California Octopus species. ZOOLOGY 2021; 147:125940. [PMID: 34198204 DOI: 10.1016/j.zool.2021.125940] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2020] [Revised: 05/13/2021] [Accepted: 05/19/2021] [Indexed: 11/21/2022]
Abstract
Octopuses have eight radially symmetrical arms that surround the base of a bilaterally symmetrical body. These numerous appendages, which explore the environment, handle food, and defend the animal against predators, are highly susceptible to truncation or loss. Here, we used scaling relationships specific to the arms of three sympatric octopus species of the genus Octopus, to calculate the proportion of arm truncation. We then compared the frequency and proportion of arm losses between different body locations. Truncated arms were found in 59.8 % of specimens examined, with individuals bearing one to as many as seven injured arms. We found a significant left side bias for greater proportion of arm truncation for all species and sexes except in O. bimaculatus males. We also found that sister species O. bimaculatus and O. bimaculoides had a greater proportion of their anterior arms (pairs 1 and 2) truncated, while in O. rubescens, posterior arms (pairs 3 and 4) were more truncated. The mean percent of arm that was truncated was 28.1 % overall but varied between species and by sex and was highest in O. rubescens females (56 %). The arms of O. rubescens also exhibited the steepest scaling patterns, and showed a positive correlation between body size and number of truncated arms. Overall, we show that arm injuries in our sampling of three intertidal species are frequent and asymmetrical, and that when injured, octopus on average lose a considerable proportion of their arm. Through quantifying the variation in arm truncation, this study provides a new foundation to explore behavioral compensation for arm loss in cephalopods.
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37
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Nneji LM, Adeola AC, Adedeji BE, Olatunde O, Onadeko AB, Eniang EA, Ayoola AO, Adeniyi AV, Okeyoyin A, Oladipo SO, Usongo JY, Rahman MM, Andem AB, Nneji IC, Ugwumba OA, Ugwumba AAA, Adeyi AO, Olory CS. Species richness, distribution pattern, and conservation status of amphibians in Cross River National Park, south‐eastern Nigeria. Biologia (Bratisl) 2021. [DOI: 10.1007/s11756-021-00751-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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38
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EFFICACY AND SAFETY OF CHLORAMPHENICOL TREATMENT FOR BATRACHOCHYTRIUM DENDROBATIDIS IN HELLBENDERS ( CRYPTOBRANCHUS ALLEGANIENSIS). J Zoo Wildl Med 2021; 52:373-378. [PMID: 33827201 DOI: 10.1638/2019-0051] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/02/2020] [Indexed: 11/21/2022] Open
Abstract
Thirteen wild-caught hellbenders (Cryptobranchus alleganiensis) were treated for Batrachochytrium dendrobatidis with continuous chloramphenicol baths at concentrations of 20 mg/L for 14 days and 200 mg/L for 14 days. Clinical signs and deaths continued after treatment with 20 mg/L chloramphenicol but ceased after treatment with 200 mg/L chloramphenicol. No evidence of toxicity was found on hematologic tests, necropsy, or histopathologic examination. Lower infection burdens were detected after treatment with chloramphenicol, but infection rates were unchanged. Chloramphenicol may be useful as a treatment for B. dendrobatidis in hellbenders but did not clear hellbenders of infection.
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39
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Jervis P, Pintanel P, Hopkins K, Wierzbicki C, Shelton JMG, Skelly E, Rosa GM, Almeida-Reinoso D, Eugenia-Ordoñez M, Ron S, Harrison X, Merino-Viteri A, Fisher MC. Post-epizootic microbiome associations across communities of neotropical amphibians. Mol Ecol 2021; 30:1322-1335. [PMID: 33411382 DOI: 10.1111/mec.15789] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2020] [Revised: 12/17/2020] [Accepted: 12/18/2020] [Indexed: 12/31/2022]
Abstract
Microbiome-pathogen interactions are increasingly recognized as an important element of host immunity. While these host-level interactions will have consequences for community disease dynamics, the factors which influence host microbiomes at larger scales are poorly understood. We here describe landscape-scale pathogen-microbiome associations within the context of post-epizootic amphibian chytridiomycosis, a disease caused by the panzootic chytrid fungus Batrachochytrium dendrobatidis. We undertook a survey of Neotropical amphibians across altitudinal gradients in Ecuador ~30 years following the observed amphibian declines and collected skin swab-samples which were metabarcoded using both fungal (ITS-2) and bacterial (r16S) amplicons. The data revealed marked variation in patterns of both B. dendrobatidis infection and microbiome structure that are associated with host life history. Stream breeding amphibians were most likely to be infected with B. dendrobatidis. This increased probability of infection was further associated with increased abundance and diversity of non-Batrachochytrium chytrid fungi in the skin and environmental microbiome. We also show that increased alpha diversity and the relative abundance of fungi are lower in the skin microbiome of adult stream amphibians compared to adult pond-breeding amphibians, an association not seen for bacteria. Finally, stream tadpoles exhibit lower proportions of predicted protective microbial taxa than pond tadpoles, suggesting reduced biotic resistance. Our analyses show that host breeding ecology strongly shapes pathogen-microbiome associations at a landscape scale, a trait that may influence resilience in the face of emerging infectious diseases.
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Affiliation(s)
- Phillip Jervis
- MRC Centre for Global Infectious Disease Analysis, School of Public Health, Imperial College, London, UK.,Institute of Zoology, Zoological Society of London, London, UK.,Department of Chemistry, UCL, London, UK.,Laboratorio de Ecofisiología and Museo de Zoología (QCAZ), Escuela de Ciencias Biológicas, Pontificia Universidad Católica del Ecuador, Quito, Ecuador
| | - Pol Pintanel
- Laboratorio de Ecofisiología and Museo de Zoología (QCAZ), Escuela de Ciencias Biológicas, Pontificia Universidad Católica del Ecuador, Quito, Ecuador.,Department of Evolutionary Ecology, Estación Biológica de Doñana, CSIC, Sevilla, Spain
| | - Kevin Hopkins
- Institute of Zoology, Zoological Society of London, London, UK
| | - Claudia Wierzbicki
- MRC Centre for Global Infectious Disease Analysis, School of Public Health, Imperial College, London, UK.,Institute of Zoology, Zoological Society of London, London, UK
| | - Jennifer M G Shelton
- MRC Centre for Global Infectious Disease Analysis, School of Public Health, Imperial College, London, UK
| | - Emily Skelly
- MRC Centre for Global Infectious Disease Analysis, School of Public Health, Imperial College, London, UK.,Institute of Zoology, Zoological Society of London, London, UK
| | - Gonçalo M Rosa
- Institute of Zoology, Zoological Society of London, London, UK.,Centre for Ecology, Evolution and Environmental Changes (cE3c), Faculdade de Ciências da Universidade de Lisboa, Lisboa, Portugal
| | - Diego Almeida-Reinoso
- Museo de Zoologίa (QCAZ), Escuela de Ciencias Biológicas, Pontificia Universidad Catόlica del Ecuador, Quito, Ecuador.,SARgrillo: Ex situ Management Program of Endangered Amphibians and Insect Breeding program, Quito, Ecuador
| | - Maria Eugenia-Ordoñez
- Fungario QCAM, Escuela de Ciencias Biológicas, Pontificia Universidad Católica del Ecuador, Quito, Ecuador
| | - Santiago Ron
- Museo de Zoologίa (QCAZ), Escuela de Ciencias Biológicas, Pontificia Universidad Catόlica del Ecuador, Quito, Ecuador
| | - Xavier Harrison
- Centre for Ecology and Conservation, University of Exeter, Penryn, UK
| | - Andrés Merino-Viteri
- Laboratorio de Ecofisiología and Museo de Zoología (QCAZ), Escuela de Ciencias Biológicas, Pontificia Universidad Católica del Ecuador, Quito, Ecuador
| | - Matthew C Fisher
- MRC Centre for Global Infectious Disease Analysis, School of Public Health, Imperial College, London, UK
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40
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Basanta MD, Byrne AQ, Rosenblum EB, Piovia-Scott J, Parra-Olea G. Early presence of Batrachochytrium dendrobatidis in Mexico with a contemporary dominance of the global panzootic lineage. Mol Ecol 2020; 30:424-437. [PMID: 33205419 DOI: 10.1111/mec.15733] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2020] [Revised: 10/26/2020] [Accepted: 11/11/2020] [Indexed: 01/13/2023]
Abstract
Chytridiomycosis, caused by the fungus Batrachochytrium dendrobatidis (Bd), is a devastating infectious disease of amphibians. Retrospective studies using museum vouchers and genetic samples supported the hypothesis that Bd colonized Mexico from North America and then continued to spread into Central and South America, where it led to dramatic losses in tropical amphibian biodiversity (the epizootic wave hypothesis). While these studies suggest that Bd has been in Mexico since the 1970s, information regarding the historical and contemporary occurrence of different pathogen genetic lineages across the country is limited. In the current study, we investigated the historical and contemporary patterns of Bd in Mexico. We combined the swabbing of historical museum vouchers and sampling of wild amphibians with a custom Bd genotyping assay to assess the presence, prevalence, and genetic diversity of Bd over time in Mexico. We found Bd-positive museum specimens from the late 1800s, far earlier than previous records and well before recent amphibian declines. With Bd genotypes from samples collected between 1975-2019, we observed a contemporary dominance of the global panzootic lineage in Mexico and report four genetic subpopulations and potential for admixture among these populations. The observed genetic variation did not have a clear geographic signature or provide clear support for the epizootic wave hypothesis. These results provide a framework for testing new questions regarding Bd invasions and their temporal relationship to observed amphibian declines in the Americas.
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Affiliation(s)
- M Delia Basanta
- Instituto de Biología, Universidad Nacional Autónoma de México, Ciudad de México, México.,Posgrado en Ciencias Biológicas, Instituto de Biología, Universidad Nacional Autónoma de México, Ciudad de México, México
| | - Allison Q Byrne
- Department of Environmental Science, Policy, and Management, University of California, Berkeley, CA, USA.,Museum of Vertebrate Zoology, University of California, Berkeley, CA, USA
| | - Erica Bree Rosenblum
- Department of Environmental Science, Policy, and Management, University of California, Berkeley, CA, USA.,Museum of Vertebrate Zoology, University of California, Berkeley, CA, USA
| | - Jonah Piovia-Scott
- School of Biological Sciences, Washington State University, Vancouver, BC, USA
| | - Gabriela Parra-Olea
- Instituto de Biología, Universidad Nacional Autónoma de México, Ciudad de México, México
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41
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Amphibian Infection Risk Changes with Host Life Stage and across a Landscape Gradient. J HERPETOL 2020. [DOI: 10.1670/19-107] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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42
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Olivares-Miranda M, Vredenburg VT, García-Sánchez JC, Byrne AQ, Rosenblum EB, Rovito SM. Fungal infection, decline and persistence in the only obligate troglodytic Neotropical salamander. PeerJ 2020; 8:e9763. [PMID: 33024623 PMCID: PMC7518159 DOI: 10.7717/peerj.9763] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2020] [Accepted: 07/28/2020] [Indexed: 01/02/2023] Open
Abstract
The fungal pathogen Batrachochytrium dendrobatidis (Bd) is implicated in global mass die-offs and declines in amphibians. In Mesoamerica, the Bd epidemic wave hypothesis is supported by detection of Bd in historic museum specimens collected over the last century, yet the timing and impact of the early stages of the wave remain poorly understood. Chiropterotriton magnipes, the only obligate troglodytic Neotropical salamander, was abundant in its small range in the decade following its description in 1965, but subsequently disappeared from known localities and was not seen for 34 years. Its decline is roughly coincident with that of other populations of Neotropical salamanders associated with the invasion and spread of Bd. To determine the presence and infection intensity of Bd on C. magnipes and sympatric amphibian species (which are also Bd hosts), we used a noninvasive sampling technique and qPCR assay to detect Bd on museum specimens of C. magnipes collected from 1952 to 2012, and from extant populations of C. magnipes and sympatric species of amphibians. We also tested for the presence of the recently discovered Batrachochytrium salamandivorans (Bsal), another fungal chytridiomycete pathogen of salamanders, using a similar technique specific for Bsal. We did not detect Bd in populations of C. magnipes before 1969, while Bd was detected at low to moderate prevalence just prior to and during declines. This pattern is consistent with Bd-caused epizootics followed by host declines and extirpations described in other hosts. We did not detect Bsal in any extant population of C. magnipes. We obtained one of the earliest positive records of the fungus to date in Latin America, providing additional historical evidence consistent with the Bd epidemic wave hypothesis. Genotyping results show that at least one population is currently infected with the Global Panzootic Lineage of Bd, but our genotyping of the historical positive samples was unsuccessful. The lack of large samples from some years and the difficulty in genotyping historical Bd samples illustrate some of the difficulties inherent in assigning causality to historical amphibian declines. These data also provide an important historical baseline for actions to preserve the few known remaining populations of C. magnipes.
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Affiliation(s)
- Mizraim Olivares-Miranda
- Unidad de Genómica Avanzada (Langebio), Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Irapuato, Guanajuato, México
| | - Vance T Vredenburg
- Department of Biology, San Francisco State University, San Francisco, CA, USA
| | - Julio C García-Sánchez
- Unidad de Genómica Avanzada (Langebio), Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Irapuato, Guanajuato, México
| | - Allison Q Byrne
- Department of Environmental Science, Policy, and Management, University of California, Berkeley, Berkeley, CA, USA
| | - Erica B Rosenblum
- Department of Environmental Science, Policy, and Management, University of California, Berkeley, Berkeley, CA, USA
| | - Sean M Rovito
- Unidad de Genómica Avanzada (Langebio), Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Irapuato, Guanajuato, México
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43
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Zumbado‐Ulate H, García‐Rodríguez A, Searle CL. Species distribution models predict the geographic expansion of an enzootic amphibian pathogen. Biotropica 2020. [DOI: 10.1111/btp.12863] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
| | - Adrián García‐Rodríguez
- Departamento de Zoología Instituto de Biología Universidad Nacional Autónoma de MéxicoUNAM Ciudad de México México
- Museo de Zoología Escuela de Biología Universidad de Costa Rica San José Costa Rica
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44
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A historical overview of Batrachochytrium dendrobatidis infection from specimens at the National Zoological Collection Suriname. PLoS One 2020; 15:e0239220. [PMID: 33006994 PMCID: PMC7531862 DOI: 10.1371/journal.pone.0239220] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2020] [Accepted: 09/01/2020] [Indexed: 11/19/2022] Open
Abstract
The amphibian skin disease chytridiomycosis, caused by the pathogenetic fungus Batrachochytrium dendrobatidis (Bd) has become one of the major contributors to global amphibian population declines and extinctions. This fungus has spread globally and has caused mortalities in nearly every continent. In South America, Suriname, Guyana and Paraguay are among the remaining three countries where Bd has not been detected to date. To complete the assessment of the possible presence of Bd in Suriname, 205 specimens from the Zoological Collection of Suriname, compromising 6 frog families and 15 genera were sampled for chytrid fungus. No specimens were found to be infected by this fungus and as such the outcome strengthens the previous result of field sampling that there is no support that Bd has spread to Suriname.
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45
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Sette CM, Vredenburg VT, Zink AG. Differences in Fungal Disease Dynamics in Co-occurring Terrestrial and Aquatic Amphibians. ECOHEALTH 2020; 17:302-314. [PMID: 33237500 DOI: 10.1007/s10393-020-01501-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2019] [Revised: 09/14/2020] [Accepted: 10/04/2020] [Indexed: 06/11/2023]
Abstract
The fungal pathogen, Batrachochytrium dendrobatidis (Bd), has devastated biodiversity and ecosystem health and is implicated as a driver of mass amphibian extinctions. This 100-year study investigates which environmental factors contribute to Bd prevalence in a fully terrestrial species, and determines whether infection patterns differ between a fully terrestrial amphibian and more aquatic host species. We performed a historical survey to quantify Bd prevalence in 1127 Batrachoseps gregarius museum specimens collected from 1920 to 2000, and recent data from 16 contemporary (live-caught) B. gregarius populations from the southwestern slopes of the Sierra Nevada mountains in California, USA. We compared these results to Bd detection rates in 1395 historical and 1033 contemporary specimens from 10 species of anurans and 427 historical Taricha salamander specimens collected throughout the Sierra Nevada mountains. Our results indicate that Bd dynamics in the entirely terrestrial species, B. gregarius, differ from aquatic species in the same region in terms of both seasonal patterns of Bd abundance and in the possible timing of Bd epizootics.
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Affiliation(s)
- Carla M Sette
- University of California, Santa Cruz, EEB/CBB mailstop, UCSC/Coastal Biology Building, 130 McAllister Way, Santa Cruz, CA, 95060, USA.
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46
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Hamm PS, Taylor JW, Cook JA, Natvig DO. Decades-old studies of fungi associated with mammalian lungs and modern DNA sequencing approaches help define the nature of the lung mycobiome. PLoS Pathog 2020; 16:e1008684. [PMID: 32730326 PMCID: PMC7392203 DOI: 10.1371/journal.ppat.1008684] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022] Open
Affiliation(s)
- Paris S. Hamm
- Department of Biology, University of New Mexico, Albuquerque, New Mexico, United States of America
| | - John W. Taylor
- Department of Plant and Microbial Biology, University of California, Berkeley, California, United States of America
| | - Joseph A. Cook
- Department of Biology, University of New Mexico, Albuquerque, New Mexico, United States of America
- Museum of Southwestern Biology, University of New Mexico, Albuquerque, New Mexico, United States of America
| | - Donald O. Natvig
- Department of Biology, University of New Mexico, Albuquerque, New Mexico, United States of America
- * E-mail:
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Jacinto-Maldonado M, García-Peña G, Paredes-León R, Saucedo B, Sarmiento-Silva R, García A, Martínez-Gómez D, Ojeda M, Del Callejo E, Suzán G. Chiggers (Acariformes: Trombiculoidea) do not increase rates of infection by Batrachochytrium dendrobatidis fungus in the endemic Dwarf Mexican Treefrog Tlalocohyla smithii (Anura: Hylidae). Int J Parasitol Parasites Wildl 2020; 11:163-173. [PMID: 32099787 PMCID: PMC7031141 DOI: 10.1016/j.ijppaw.2019.12.005] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2019] [Revised: 12/16/2019] [Accepted: 12/16/2019] [Indexed: 12/29/2022]
Abstract
Amphibian populations are globally declining at an alarming rate, and infectious diseases are among the main causes of their decline. Two micro-parasites, the fungus Batrachochytrium dendrobatidis (Bd) and the virus Ranavirus (RV) have caused mass mortality of amphibians and population declines. Other, less understood epizootics are caused by macro-parasites, such as Trombiculoidea chiggers. Infection with chiggers can affect frog behavior and survival. Furthermore, synergistic effects of co-infection with both macro and micro-parasites may lead to higher morbidity. To better understand these potential synergies, we investigated the presence and co-infection by chiggers, Bd and RV in the endemic frog Tlalocohyla smithii (T. smithii). Co-infection of Bd, RV, and/or chiggers is expected in habitats that are suitable for their co-occurrence; and if infection with one parasite facilitates infection with the others. On the other hand, co-infection could decrease if these parasites were to differ in their micro-environmental requirements (i.e. niche apportionment). A total of 116 frogs of T. smithii were studied during 2014 and 2016 in three streams within the Chamela-Cuixmala Biosphere Reserve in Jalisco, Mexico. Our results show that 31% of the frogs were infected with Trombiculoidea chiggers (Hannemania sp. and Eutrombicula alfreddugesi); Hannemania prevalence increased with air temperature and decreased in sites with high canopies and with water pH values above 8.5 and below 6.7. Bd prevalence was 2.6%, RV prevalence was 0%, and none of the frogs infected with chiggers were co-infected with Bd. Together, this study suggests that chiggers do not facilitate infection with Bd, as these are apportioned in different micro-habitats. Nevertheless, the statistical power to assure this is low. We recommend further epidemiological monitoring of multiple parasites in different geographical locations in order to provide insight on the true hazards, risks and conservation options for amphibian populations.
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Affiliation(s)
- M. Jacinto-Maldonado
- The Complexity Sciences Center C3 Universidad Nacional Autónoma de México, Av. Universidad, 3000, Mexico City, Mexico
- Faculty of Veterinary Medicine, Universidad Nacional Autónoma de México (UNAM), Av. Universidad, 3000, Mexico City, Mexico
| | - G.E. García-Peña
- The Complexity Sciences Center C3 Universidad Nacional Autónoma de México, Av. Universidad, 3000, Mexico City, Mexico
- Faculty of Veterinary Medicine, Universidad Nacional Autónoma de México (UNAM), Av. Universidad, 3000, Mexico City, Mexico
| | - R. Paredes-León
- National Mite Collection, Biology Institute, Universidad Nacional Autónoma de México, Mexico
| | - B. Saucedo
- Animal Health Trust, Lanwades Park, CB87UU, Newmarket, United Kingdom
| | - R.E. Sarmiento-Silva
- Faculty of Veterinary Medicine, Universidad Nacional Autónoma de México (UNAM), Av. Universidad, 3000, Mexico City, Mexico
| | - A. García
- Chamela Biological Station, Biology Institute, San Patricio Melaque, 48980, La Huerta, Jalisco, Mexico
| | - D. Martínez-Gómez
- Department of Agriculture and Animal Production, Universidad Autónoma Metropolitana. Unit of Xochimilco. Prol, Canal de Miramontes, 3855, Mexico City, Mexico
| | - M. Ojeda
- National Mite Collection, Biology Institute, Universidad Nacional Autónoma de México, Mexico
| | - E. Del Callejo
- The Complexity Sciences Center C3 Universidad Nacional Autónoma de México, Av. Universidad, 3000, Mexico City, Mexico
| | - G. Suzán
- Faculty of Veterinary Medicine, Universidad Nacional Autónoma de México (UNAM), Av. Universidad, 3000, Mexico City, Mexico
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48
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Sainsbury AW, Chantrey J, Ewen JG, Gurnell J, Hudson P, Karesh WB, Kock RA, Lurz PWW, Meredith A, Tompkins DM. Implications of squirrelpox virus for successful red squirrel translocations within mainland
UK. CONSERVATION SCIENCE AND PRACTICE 2020. [DOI: 10.1111/csp2.200] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023] Open
Affiliation(s)
| | - Julian Chantrey
- School of Veterinary Science, University of Liverpool Liverpool UK
| | - John G. Ewen
- Institute of Zoology, Zoological Society of London Regent's Park, London UK
- IUCN SSC Conservation Translocation Specialist Group UK
| | | | - Peter Hudson
- Nelson Mandela African Institute—Arusha, A co‐hire of The Huck Institutes & The Institutes of Energy & The Environment Penn State University Pennsylvania USA
| | - William B. Karesh
- IUCN SSC Wildlife Health Specialist Group Chair, EcoHealth Alliance New York New York USA
| | | | - Peter W. W. Lurz
- Royal (Dick) School of Veterinary Studies and Roslin Institute, University of Edinburgh Roslin, Midlothian UK
| | - Anna Meredith
- Royal (Dick) School of Veterinary Studies and Roslin Institute, University of Edinburgh Roslin, Midlothian UK
- Melbourne Veterinary School, Faculty of Veterinary and Agricultural Sciences, University of Melbourne Parkville VIC Australia
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Ellison A, Zamudio K, Lips K, Muletz‐Wolz C. Temperature‐mediated shifts in salamander transcriptomic responses to the amphibian‐killing fungus. Mol Ecol 2020; 29:325-343. [DOI: 10.1111/mec.15327] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2019] [Revised: 11/04/2019] [Accepted: 12/03/2019] [Indexed: 12/14/2022]
Affiliation(s)
- Amy Ellison
- School of Natural Sciences Bangor University Bangor UK
| | - Kelly Zamudio
- Department of Ecology & Evolutionary Biology Cornell University Ithaca NY USA
| | - Karen Lips
- Department of Biology University of Maryland College Park MD USA
| | - Carly Muletz‐Wolz
- Department of Biology University of Maryland College Park MD USA
- Center for Conservation Genomics Smithsonian Conservation Biology Institute National Zoological Park Washington DC USA
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Ghimire TR, Regmi GR, Huettmann F. When Micro Drives the Macro: A Fresh Look at Disease and its Massive Contributions in the Hindu Kush-Himalaya. HINDU KUSH-HIMALAYA WATERSHEDS DOWNHILL: LANDSCAPE ECOLOGY AND CONSERVATION PERSPECTIVES 2020. [PMCID: PMC7197387 DOI: 10.1007/978-3-030-36275-1_40] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The outbreaks of emerging and reemerging diseases have a high impact on the human and animal health because they are the underlying causes of disability, death, and long-term illness. For many regions those details are not, or just poorly known. Here we present on the morbidity and mortality in faunal diversities including domestic and wild species caused by various viral, bacterial, parasitic, and fungal diseases prevalent in Nepal and relevant for the wider Hindu Kush Himalaya. In addition, we provide details how antibiotic resistivity, vectors, and zoonosis have resulted on a landscape-scale in the huge public and veterinary health problem has been dealt with in the context of Nepal and the wider region.
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