1
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Guran SH, Yousefi M, Kafash A, Ghasidian E. Reconstructing contact and a potential interbreeding geographical zone between Neanderthals and anatomically modern humans. Sci Rep 2024; 14:20475. [PMID: 39227643 PMCID: PMC11372063 DOI: 10.1038/s41598-024-70206-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2024] [Accepted: 08/13/2024] [Indexed: 09/05/2024] Open
Abstract
While the interbreeding of Homo neanderthalensis (hereafter Neanderthal) and Anatomically modern human (AMH) has been proven, owing to the shortage of fossils and absence of appropriate DNA, the timing and geography of their interbreeding are not clearly known. In this study, we applied ecological niche modelling (maximum entropy approach) and GIS to reconstruct the palaeodistribution of Neanderthals and AMHs in Southwest Asia and Southeast Europe and identify their contact and potential interbreeding zone during marine isotope stage 5 (MIS 5), when the second wave of interbreeding occurred. We used climatic variables characterizing the environmental conditions of MIS 5 ca. 120 to 80 kyr (averaged value) along with the topography and coordinates of Neanderthal and modern human archaeological sites to characterize the palaeodistribution of each species. Overlapping the models revealed that the Zagros Mountains were a contact and potential interbreeding zone for the two human species. We believe that the Zagros Mountains acted as a corridor connecting the Palearctic/Afrotropical realms, facilitating northwards dispersal of AMHs and southwards dispersal of Neanderthals during MIS 5. Our analyses are comparable with archaeological and genetic evidence collected during recent decades.
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Affiliation(s)
- Saman H Guran
- Institute for Prehistoric Archaeology, University of Cologne, Cologne, Germany.
- DiyarMehr Institute for Palaeolithic Research, Kermanshah, Iran.
| | - Masoud Yousefi
- Stiftung Neanderthal Museum, Mettmann, Germany
- Department of Biology, Hakim Sabzevari University, Sabzevar, Iran
| | - Anooshe Kafash
- School of Culture and Society, Department of Archaeology and Heritage Studies, Aarhus University, Aarhus, Denmark
| | - Elham Ghasidian
- DiyarMehr Institute for Palaeolithic Research, Kermanshah, Iran
- Stiftung Neanderthal Museum, Mettmann, Germany
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2
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Ruan J, Timmermann A, Raia P, Yun KS, Zeller E, Mondanaro A, Di Febbraro M, Lemmon D, Castiglione S, Melchionna M. Climate shifts orchestrated hominin interbreeding events across Eurasia. Science 2023; 381:699-704. [PMID: 37561879 DOI: 10.1126/science.add4459] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2022] [Accepted: 04/19/2023] [Indexed: 08/12/2023]
Abstract
When, where, and how often hominin interbreeding happened is largely unknown. We study the potential for Neanderthal-Denisovan admixture using species distribution models that integrate extensive fossil, archaeological, and genetic data with transient coupled general circulation model simulations of global climate and biomes. Our Pleistocene hindcast of past hominins' habitat suitability reveals pronounced climate-driven zonal shifts in the main overlap region of Denisovans and Neanderthals in central Eurasia. These shifts, which influenced the timing and intensity of potential interbreeding events, can be attributed to the response of climate and vegetation to past variations in atmospheric carbon dioxide and Northern Hemisphere ice-sheet volume. Therefore, glacial-interglacial climate swings likely played an important role in favoring gene flow between archaic humans.
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Affiliation(s)
- Jiaoyang Ruan
- Center for Climate Physics, Institute for Basic Science, Busan, South Korea
- Center for Climate Physics, Pusan National University, Busan, South Korea
| | - Axel Timmermann
- Center for Climate Physics, Institute for Basic Science, Busan, South Korea
- Center for Climate Physics, Pusan National University, Busan, South Korea
| | - Pasquale Raia
- DiSTAR, Monte Sant'Angelo, Napoli Università di Napoli Federico II, Naples, Italy
| | - Kyung-Sook Yun
- Center for Climate Physics, Institute for Basic Science, Busan, South Korea
- Center for Climate Physics, Pusan National University, Busan, South Korea
| | - Elke Zeller
- Center for Climate Physics, Institute for Basic Science, Busan, South Korea
- Department of Climate System, Pusan National University, Busan, South Korea
| | | | - Mirko Di Febbraro
- Department of Biosciences and Territory, University of Molise, C. da Fonte Lappone, Pesche, Italy
| | - Danielle Lemmon
- Center for Climate Physics, Institute for Basic Science, Busan, South Korea
- Center for Climate Physics, Pusan National University, Busan, South Korea
| | - Silvia Castiglione
- DiSTAR, Monte Sant'Angelo, Napoli Università di Napoli Federico II, Naples, Italy
| | - Marina Melchionna
- DiSTAR, Monte Sant'Angelo, Napoli Università di Napoli Federico II, Naples, Italy
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3
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Baumann M, Plisson H, Maury S, Renou S, Coqueugniot H, Vanderesse N, Kolobova K, Shnaider S, Rots V, Guérin G, Rendu W. On the Quina side: A Neanderthal bone industry at Chez-Pinaud site, France. PLoS One 2023; 18:e0284081. [PMID: 37315040 DOI: 10.1371/journal.pone.0284081] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2022] [Accepted: 03/23/2023] [Indexed: 06/16/2023] Open
Abstract
Did Neanderthal produce a bone industry? The recent discovery of a large bone tool assemblage at the Neanderthal site of Chagyrskaya (Altai, Siberia, Russia) and the increasing discoveries of isolated finds of bone tools in various Mousterian sites across Eurasia stimulate the debate. Assuming that the isolate finds may be the tip of the iceberg and that the Siberian occurrence did not result from a local adaptation of easternmost Neanderthals, we looked for evidence of a similar industry in the Western side of their spread area. We assessed the bone tool potential of the Quina bone-bed level currently under excavation at chez Pinaud site (Jonzac, Charente-Maritime, France) and found as many bone tools as flint ones: not only the well-known retouchers but also beveled tools, retouched artifacts and a smooth-ended rib. Their diversity opens a window on a range of activities not expected in a butchering site and not documented by the flint tools, all involved in the carcass processing. The re-use of 20% of the bone blanks, which are mainly from large ungulates among faunal remains largely dominated by reindeer, raises the question of blank procurement and management. From the Altai to the Atlantic shore, through a multitude of sites where only a few objects have been reported so far, evidence of a Neanderthal bone industry is emerging which provides new insights on Middle Paleolithic subsistence strategies.
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Affiliation(s)
| | - Hugues Plisson
- PACEA UMR 5199, CNRS, University of Bordeaux, Pessac, France
| | | | | | - Hélène Coqueugniot
- PACEA UMR 5199, CNRS, University of Bordeaux, Pessac, France
- Ecole Pratique des Hautes Etudes-PSL University, Paris, France
| | | | - Ksenyia Kolobova
- Paleolithic Department, Institute of archaeology and Ethnography, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russian Federation
| | - Svetlana Shnaider
- ZooSCAN, International Research Laboratory 2013, CNRS, Novosibirsk, Russian Federation
| | | | - Guillaume Guérin
- Géosciences Rennes UMR 6118, CNRS, University of Rennes, Rennes, France
| | - William Rendu
- ZooSCAN, International Research Laboratory 2013, CNRS, Novosibirsk, Russian Federation
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4
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Ghasidian E, Kafash A, Kehl M, Yousefi M, Heydari-Guran S. Modelling Neanderthals' dispersal routes from Caucasus towards east. PLoS One 2023; 18:e0281978. [PMID: 36821540 PMCID: PMC9949648 DOI: 10.1371/journal.pone.0281978] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2022] [Accepted: 02/05/2023] [Indexed: 02/24/2023] Open
Abstract
The study of the cultural materials associated with the Neanderthal physical remains from the sites in the Caucasus, Central Asia and Siberian Altai and adjacent areas documents two distinct techno-complexes of Micoquian and Mousterian. These findings potentially outline two dispersal routes for the Neanderthals out of Europe. Using data on topography and Palaeoclimate, we generated computer-based least-cost-path modelling for the Neanderthal dispersal routes from Caucasus towards the east. In this regard, two dispersal routes have been identified: A northern route from Greater Caucasus associated with Micoquian techno-complex towards Siberian Altai and a southern route from Lesser Caucasus associated with Mousterian towards Siberian Altai via the Southern Caspian Corridor. Based on archaeological, bio- and physio-geographical data, our model hypothesises that during climatic deterioration phases (e.g. MIS 4) the connection between Greater and Lesser Caucasus was limited. This issue perhaps resulted in the separate development and spread of two cultural groups of Micoquian and Mousterian with an input from two different population sources of Neanderthal influxes: eastern and southern Europe refugia for these two northern and southern dispersal routes respectively. Of these two, we focus on the southern dispersal route, for it comprises a 'rapid dispersal route' towards east. The significant location of the Southern Caspian corridor between high mountains of Alborz and the Caspian Sea, provided a special biogeographical zone and a refugium. This exceptional physio-geographic condition brings forward the Southern Caspian corridor as a potential place of admixture of different hominin species including Neanderthals and homo sapiens.
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Affiliation(s)
- Elham Ghasidian
- Neanderthal Museum, Mettmann, Germany
- DiyarMehr Institute for Palaeolithic Research, Kermanshah, Iran
- Institute for Prehistoric Archaeology, University of Cologne, Koln, Germany
- Institute of Geography, University of Cologne, Cologne, Germany
| | - Anooshe Kafash
- Department of Environmental Science, Faculty of Natural Resources, University of Tehran, Tehran, Iran
| | - Martin Kehl
- Institute for Prehistoric Archaeology, University of Cologne, Koln, Germany
- Institute of Geography, University of Cologne, Cologne, Germany
| | - Masoud Yousefi
- Department of Environmental Science, Faculty of Natural Resources, University of Tehran, Tehran, Iran
| | - Saman Heydari-Guran
- Neanderthal Museum, Mettmann, Germany
- DiyarMehr Institute for Palaeolithic Research, Kermanshah, Iran
- Institute for Prehistoric Archaeology, University of Cologne, Koln, Germany
- Institute of Geography, University of Cologne, Cologne, Germany
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5
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Popli D, Peyrégne S, Peter BM. KIN: a method to infer relatedness from low-coverage ancient DNA. Genome Biol 2023; 24:10. [PMID: 36650598 PMCID: PMC9843908 DOI: 10.1186/s13059-023-02847-7] [Citation(s) in RCA: 20] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2022] [Accepted: 01/04/2023] [Indexed: 01/19/2023] Open
Abstract
Genetic kinship of ancient individuals can provide insights into their culture and social hierarchy, and is relevant for downstream genetic analyses. However, estimating relatedness from ancient DNA is difficult due to low-coverage, ascertainment bias, or contamination from various sources. Here, we present KIN, a method to estimate the relatedness of a pair of individuals from the identical-by-descent segments they share. KIN accurately classifies up to 3rd-degree relatives using at least 0.05x sequence coverage and differentiates siblings from parent-child pairs. It incorporates additional models to adjust for contamination and detect inbreeding, which improves classification accuracy.
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Affiliation(s)
- Divyaratan Popli
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany.
| | - Stéphane Peyrégne
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Benjamin M Peter
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany.
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6
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Doronicheva EV, Golovanova LV, Doronichev VB, Kurbanov RN. Archaeological evidence for two culture diverse Neanderthal populations in the North Caucasus and contacts between them. PLoS One 2023; 18:e0284093. [PMID: 37053172 PMCID: PMC10101426 DOI: 10.1371/journal.pone.0284093] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2022] [Accepted: 03/23/2023] [Indexed: 04/14/2023] Open
Abstract
Neanderthals were widespread during the Middle Palaeolithic (MP) across Europe and Asia, including the Caucasus Mountains. Occupying the border between eastern Europe and West Asia, the Caucasus is important region regarding the Neanderthal occupation of Eurasia. On current radiometric estimates, the MP is represented in the Caucasus between about 260-210 ka and about 40 ka. Archaeological record indicates that several culture diverse MP hominin populations inhabited the Caucasus, but the region complex population history during this period remains poorly understood. In this paper, we identify for the first time the archaeological evidence indicating contacts between two culture diverse MP Neanderthal populations in the North Caucasus and discuss the nature of these contacts. Basing on the lithic assemblages that we excavated at Mezmaiskaya cave in the north-western Caucasus (Kuban River basin) and Saradj-Chuko grotto in the north-central Caucasus (Terek River basin), dating from MIS 5 to MIS 3, and comparative data from other MP sites in the Caucasus, we identify two large cultural regions that existed during the late MP in the North Caucasus. The distinctive toolkits and stone knapping technologies indicate that the MP assemblages from Mezmaiskaya cave and other sites in the west of North Caucasus represent a Caucasian variant of the Eastern Micoquian industry that was wide spread in central and eastern Europe, while the assemblages from Saradj-Chuko Grotto and other sites in the east of North Caucasus closely resemble the Zagros Mousterian industry that was wide spread in the Armenian Highlands, Lesser Caucasus and Zagros Mountains. The archaeological evidence implies that two culture diverse populations of Neanderthals settled the North Caucasus during the Late Pleistocene from two various source regions: from the Armenian Highlands and Lesser Caucasus along the Caspian Sea coast, and from Russian plain along the Sea of Azov coast.
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Affiliation(s)
- Ekaterina V Doronicheva
- Autonomous Nonprofit Organization in the Field of Humanitarian and Scientific Research «Laboratory of Prehistory», St. Petersburg, Russia
| | - Liubov V Golovanova
- Autonomous Nonprofit Organization in the Field of Humanitarian and Scientific Research «Laboratory of Prehistory», St. Petersburg, Russia
| | - Vladimir B Doronichev
- Autonomous Nonprofit Organization in the Field of Humanitarian and Scientific Research «Laboratory of Prehistory», St. Petersburg, Russia
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7
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Zhao C, Wang Y, Walden JP. Diachronic shifts in lithic technological transmission between the eastern Eurasian Steppe and northern China in the Late Pleistocene. PLoS One 2022; 17:e0275162. [PMID: 36327263 PMCID: PMC9632798 DOI: 10.1371/journal.pone.0275162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2022] [Accepted: 09/12/2022] [Indexed: 11/06/2022] Open
Abstract
The successful occupation of the eastern Eurasian Steppe in the Late Pleistocene improved cultural connections between western Eurasia and East Asia. We document multiple waves of lithic technological transmission between the eastern Eurasian Steppe and northern China during 50-11 cal. ka BP. These waves are apparent in the sequential appearance of three techno-complexes in northern China: (1) the Mousterian techno-complex, (2) the blade techno-complex mixed with Mousterian elements, (3) and the microlithized blade techno-complex. These lithic techno-complexes were transmitted under different paleoenvironmental conditions along different pathways through the eastern Eurasian Steppe. The Mousterian techno-complex and the blade techno-complex mixed with Mousterian elements were only dispersed in the north and west peripheries of northern China (50-33 cal. ka BP). We argue that these techno-complexes failed to penetrate into the hinterland of northern China because they were not well suited to local geographical conditions. In contrast, the microlithized blade technology which diffused from the eastern Eurasian Steppe was locally modified into a Microblade techno-complex which was highly suited to local environmental conditions, and proliferated across the hinterland of northern China (28/27-11 cal. ka BP). The subsequent spread of microblade technology over vast regions of Mongolia and Siberia indicates that the Pleistocene inhabitants of northern China not only adopted and modified technologies from their neighbors in the Eurasian Steppe, but these modified variants were subsequently transmitted back into the Eurasian Steppe. These episodes of technological transmission indicate complicated patterns of population dispersal and technological interaction across northern China and the eastern Eurasian Steppe.
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Affiliation(s)
- Chao Zhao
- School of History and Civilization, Shaanxi Normal University, Xi’an, China
- * E-mail:
| | - Youping Wang
- School of Archaeology and Museology, Peking University, Beijing, China
| | - John P. Walden
- Department of Anthropology, Harvard University, Boston, Massachusetts, United States of America
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8
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Finestone EM, Breeze PS, Breitenbach SFM, Drake N, Bergmann L, Maksudov F, Muhammadiyev A, Scott P, Cai Y, Khatsenovich AM, Rybin EP, Nehrke G, Boivin N, Petraglia M. Paleolithic occupation of arid Central Asia in the Middle Pleistocene. PLoS One 2022; 17:e0273984. [PMID: 36269723 PMCID: PMC9586385 DOI: 10.1371/journal.pone.0273984] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2022] [Accepted: 08/19/2022] [Indexed: 11/07/2022] Open
Abstract
Central Asia is positioned at a crossroads linking several zones important to hominin dispersal during the Middle Pleistocene. However, the scarcity of stratified and dated archaeological material and paleoclimate records makes it difficult to understand dispersal and occupation dynamics during this time period, especially in arid zones. Here we compile and analyze paleoclimatic and archaeological data from Pleistocene Central Asia, including examination of a new layer-counted speleothem-based multiproxy record of hydrological changes in southern Uzbekistan at the end of MIS 11. Our findings indicate that Lower Palaeolithic sites in the steppe, semi-arid, and desert zones of Central Asia may have served as key areas for the dispersal of hominins into Eurasia during the Middle Pleistocene. In agreement with previous studies, we find that bifaces occur across these zones at higher latitudes and in lower altitudes relative to the other Paleolithic assemblages. We argue that arid Central Asia would have been intermittently habitable during the Middle Pleistocene when long warm interglacial phases coincided with periods when the Caspian Sea was experiencing consistently high water levels, resulting in greater moisture availability and more temperate conditions in otherwise arid regions. During periodic intervals in the Middle Pleistocene, the local environment of arid Central Asia was likely a favorable habitat for paleolithic hominins and was frequented by Lower Paleolithic toolmakers producing bifaces.
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Affiliation(s)
- Emma M. Finestone
- Department of Anthropology, The Cleveland Museum of Natural History, Cleveland, OH, United States of America
- Department of Archaeology, Max Planck Institute for the Science of Human History, Jena, Germany
- * E-mail:
| | - Paul S. Breeze
- Department of Geography, Kings College London, London, United Kingdom
| | - Sebastian F. M. Breitenbach
- Department of Geography and Environmental Sciences, Northumbria University, Newcastle upon Tyne, United Kingdom
| | - Nick Drake
- Department of Archaeology, Max Planck Institute for the Science of Human History, Jena, Germany
- Department of Geography, Kings College London, London, United Kingdom
| | - Laura Bergmann
- Department of Physical Geography, Catholic University of Eichstätt-Ingolstadt, Eichstätt, Germany
| | - Farhod Maksudov
- National Center of Archaeology, Uzbekistan Academy of Sciences, Tashkent, Uzbekistan
| | - Akmal Muhammadiyev
- National Center of Archaeology, Uzbekistan Academy of Sciences, Tashkent, Uzbekistan
| | - Pete Scott
- Centre for Microscopy, Characterisation and Analysis, The University of Western Australia, Perth, Australia
| | - Yanjun Cai
- Institute of Global Environmental Change, Xi’an Jiaotong University, Xi’an, China
| | - Arina M. Khatsenovich
- Institute of Archaeology and Ethnography of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia
| | - Evgeny P. Rybin
- Institute of Archaeology and Ethnography of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia
| | - Gernot Nehrke
- Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung, Bremerhaven, Germany
| | - Nicole Boivin
- Department of Archaeology, Max Planck Institute for the Science of Human History, Jena, Germany
- School of Social Science, University of Queensland, Brisbane, Australia
- Department of Anthropology and Archaeology, University of Calgary, Calgary, Canada
- Department of Anthropology, National Museum of Natural History, Smithsonian Institution, Washington, DC, United States of America
| | - Michael Petraglia
- Department of Archaeology, Max Planck Institute for the Science of Human History, Jena, Germany
- School of Social Science, University of Queensland, Brisbane, Australia
- Human Origins Program, National Museum of Natural History, Smithsonian Institution, Washington, DC, United States of America
- Australian Research Centre for Human Evolution, Griffith University, Brisbane, Australia
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9
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Zubova AV, Kulkov AM, Pikhur OL, Moiseyev VG, Kolobova KA, Markin SV. A Case of Chronic Maxillary Sinusitis in a Late Neanderthal Population of the Altai Mountains. ARCHAEOLOGY, ETHNOLOGY & ANTHROPOLOGY OF EURASIA 2022. [DOI: 10.17746/1563-0110.2022.50.3.131-139] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/24/2023]
Abstract
We describe a likely case of chronic maxillary sinusitis (CMS) in a Neanderthal skeletal sample from Chagyrskaya Cave, in the Altai Mountains. Signs of CMS were recorded in the Chagyrskaya 57 specimen, which is a fragment of a left maxilla. Alveoli of the upper fi rst molar are partially preserved, and so are the second and third upper molars, with adjacent parts of the walls, and the fl oor of the maxillary sinus. The fragment was found in layer 6b, dating to 53,100–51,100 BP. We analyze the factors that had caused the development of the disease, and assess its etiology. In the 3D-model, generated by computed microtomography, and in the original specimen, porotic changes were registered, situated at the fracture line of the alveoli of M1, lost post-mortem, and near the vestibular roots of both preserved molars. Also, there were isolated bone spicules, 1.0–2.6 mm in size. These signs indicate incipient CMS, evidently caused by chronic periodontal disease combined with a deep alveolar recess of the maxillary sinus. As the periodontal gap expanded, several small nutrient foramina, piercing the bottom of the sinus, merged. As a result, several oro-antral channels formed, whereupon the infection spread into the maxillary sinus. Since the deep alveolar recess is observed in the vast majority of Neanderthal crania with published images or reconstructed maxillary cavities, it can be assumed that Neanderthals were predisposed to odontogenic CMS.
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Affiliation(s)
- A. V. Zubova
- Peter the Great Museum of Anthropology and Ethnography (Kunstkamera), Russian Academy of Sciences; Institute of Archaeology and Ethnography, Siberian Branch, Russian Academy of Sciences
| | | | | | - V. G. Moiseyev
- Peter the Great Museum of Anthropology and Ethnography (Kunstkamera), Russian Academy of Sciences
| | - K. A. Kolobova
- Institute of Archaeology and Ethnography, Siberian Branch, Russian Academy of Sciences
| | - S. V. Markin
- Institute of Archaeology and Ethnography, Siberian Branch, Russian Academy of Sciences
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10
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Cassidy LM. The first genomic portrait of a Neanderthal family. Nature 2022; 610:454-455. [PMID: 36261544 DOI: 10.1038/d41586-022-03005-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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11
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Skov L, Peyrégne S, Popli D, Iasi LNM, Devièse T, Slon V, Zavala EI, Hajdinjak M, Sümer AP, Grote S, Bossoms Mesa A, López Herráez D, Nickel B, Nagel S, Richter J, Essel E, Gansauge M, Schmidt A, Korlević P, Comeskey D, Derevianko AP, Kharevich A, Markin SV, Talamo S, Douka K, Krajcarz MT, Roberts RG, Higham T, Viola B, Krivoshapkin AI, Kolobova KA, Kelso J, Meyer M, Pääbo S, Peter BM. Genetic insights into the social organization of Neanderthals. Nature 2022; 610:519-525. [PMID: 36261548 PMCID: PMC9581778 DOI: 10.1038/s41586-022-05283-y] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Accepted: 08/26/2022] [Indexed: 11/22/2022]
Abstract
Genomic analyses of Neanderthals have previously provided insights into their population history and relationship to modern humans1-8, but the social organization of Neanderthal communities remains poorly understood. Here we present genetic data for 13 Neanderthals from two Middle Palaeolithic sites in the Altai Mountains of southern Siberia: 11 from Chagyrskaya Cave9,10 and 2 from Okladnikov Cave11-making this one of the largest genetic studies of a Neanderthal population to date. We used hybridization capture to obtain genome-wide nuclear data, as well as mitochondrial and Y-chromosome sequences. Some Chagyrskaya individuals were closely related, including a father-daughter pair and a pair of second-degree relatives, indicating that at least some of the individuals lived at the same time. Up to one-third of these individuals' genomes had long segments of homozygosity, suggesting that the Chagyrskaya Neanderthals were part of a small community. In addition, the Y-chromosome diversity is an order of magnitude lower than the mitochondrial diversity, a pattern that we found is best explained by female migration between communities. Thus, the genetic data presented here provide a detailed documentation of the social organization of an isolated Neanderthal community at the easternmost extent of their known range.
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Affiliation(s)
- Laurits Skov
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany.
| | - Stéphane Peyrégne
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Divyaratan Popli
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Leonardo N M Iasi
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Thibaut Devièse
- European Centre for Research and Education in Environmental Geosciences (CEREGE), Aix-Marseille University, CNRS, IRD, INRAE, Collège de France, Aix-en-Provence, France
| | - Viviane Slon
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
- Department of Anatomy and Anthropology Sackler, Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel
- The Dan David Center for Human Evolution and Biohistory Research, Tel Aviv University, Tel Aviv, Israel
- Department of Human Molecular Genetics and Biochemistry, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel
| | - Elena I Zavala
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Mateja Hajdinjak
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
- The Francis Crick Institute, London, UK
| | - Arev P Sümer
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Steffi Grote
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Alba Bossoms Mesa
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - David López Herráez
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Birgit Nickel
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Sarah Nagel
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Julia Richter
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Elena Essel
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Marie Gansauge
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Anna Schmidt
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Petra Korlević
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
- Wellcome Sanger Institute, Hinxton, UK
| | - Daniel Comeskey
- Oxford Radiocarbon Accelerator Unit, Research Laboratory for Archaeology and the History of Art, University of Oxford, Oxford, UK
| | - Anatoly P Derevianko
- Institute of Archaeology and Ethnography, Russian Academy of Sciences, Novosibirsk, Russia
| | - Aliona Kharevich
- Institute of Archaeology and Ethnography, Russian Academy of Sciences, Novosibirsk, Russia
| | - Sergey V Markin
- Institute of Archaeology and Ethnography, Russian Academy of Sciences, Novosibirsk, Russia
| | - Sahra Talamo
- Department of Chemistry G. Ciamician, Alma Mater Studiorum, University of Bologna, Bologna, Italy
- Department of Human Evolution, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Katerina Douka
- Department of Evolutionary Anthropology, Faculty of Life Sciences, University of Vienna, Vienna, Austria
- Department of Archaeology, Max Planck Institute for the Science of Human History, Jena, Germany
- Human Evolution and Archaeological Sciences Forschungsverbund, University of Vienna, Vienna, Austria
| | - Maciej T Krajcarz
- Institute of Geological Sciences, Polish Academy of Sciences, Warsaw, Poland
| | - Richard G Roberts
- Centre for Archaeological Science, School of Earth, Atmospheric and Life Sciences, University of Wollongong, Wollongong, New South Wales, Australia
- Australian Research Council (ARC) Centre of Excellence for Australian Biodiversity and Heritage, University of Wollongong, Wollongong, New South Wales, Australia
| | - Thomas Higham
- Department of Evolutionary Anthropology, Faculty of Life Sciences, University of Vienna, Vienna, Austria
- Human Evolution and Archaeological Sciences Forschungsverbund, University of Vienna, Vienna, Austria
| | - Bence Viola
- Department of Anthropology, University of Toronto, Toronto, Ontario, Canada
| | - Andrey I Krivoshapkin
- Institute of Archaeology and Ethnography, Russian Academy of Sciences, Novosibirsk, Russia
| | - Kseniya A Kolobova
- Institute of Archaeology and Ethnography, Russian Academy of Sciences, Novosibirsk, Russia
| | - Janet Kelso
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Matthias Meyer
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Svante Pääbo
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Benjamin M Peter
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany.
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12
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Kot M, Berto C, Krajcarz MT, Moskal-Del Hoyo M, Gryczewska N, Szymanek M, Marciszak A, Stefaniak K, Zarzecka-Szubińska K, Lipecki G, Wertz K, Madeyska T. Frontiers of the Lower Palaeolithic expansion in Europe: Tunel Wielki Cave (Poland). Sci Rep 2022; 12:16355. [PMID: 36175468 PMCID: PMC9523034 DOI: 10.1038/s41598-022-20582-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2022] [Accepted: 09/15/2022] [Indexed: 12/04/2022] Open
Abstract
Peopling of Central Europe by Middle Pleistocene hominids is highly debatable, mainly due to the relatively harsh climatic and environmental conditions that require cultural and anatomical adjustments. At least several archaeological sites certify human occupation in the region dated back to MIS 13-11, but they represent open-air settlements. Based on the new fieldwork conducted in Tunel Wielki Cave, we can date the human occupation traces in the cave to MIS 14-12. Bipolar-on-anvil knapping technique prevails in the lithic assemblage, made exclusively in flint. The obtained results have given ground for studying the frontiers of human oikumene and the required cultural adaptive abilities.
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Affiliation(s)
- Małgorzata Kot
- Faculty of Archaeology, University of Warsaw, Krakowskie Przedmieście 26/28, 00-927, Warsaw, Poland.
| | - Claudio Berto
- Faculty of Archaeology, University of Warsaw, Krakowskie Przedmieście 26/28, 00-927, Warsaw, Poland
| | - Maciej T Krajcarz
- Institute of Geological Sciences, Polish Academy of Sciences, Twarda 51/55, 00-818, Warsaw, Poland
| | | | - Natalia Gryczewska
- Faculty of Archaeology, University of Warsaw, Krakowskie Przedmieście 26/28, 00-927, Warsaw, Poland
| | - Marcin Szymanek
- Faculty of Geology, University of Warsaw, Żwirki i Wigury 93, 02-089, Warsaw, Poland
| | - Adrian Marciszak
- Department of Palaeozoology, Faculty of Biological Sciences, University of Wrocław, Sienkiewicza 21, 50-335, Wrocław, Poland
| | - Krzysztof Stefaniak
- Department of Palaeozoology, Faculty of Biological Sciences, University of Wrocław, Sienkiewicza 21, 50-335, Wrocław, Poland
| | - Katarzyna Zarzecka-Szubińska
- Department of Palaeozoology, Faculty of Biological Sciences, University of Wrocław, Sienkiewicza 21, 50-335, Wrocław, Poland
| | - Grzegorz Lipecki
- Institute of Systematics and Evolution of Animals, Polish Academy of Sciences, Sławkowska 17, 31-016, Kraków, Poland
| | - Krzysztof Wertz
- Institute of Systematics and Evolution of Animals, Polish Academy of Sciences, Sławkowska 17, 31-016, Kraków, Poland
| | - Teresa Madeyska
- Institute of Geological Sciences, Polish Academy of Sciences, Twarda 51/55, 00-818, Warsaw, Poland
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13
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Andreeva TV, Manakhov AD, Gusev FE, Patrikeev AD, Golovanova LV, Doronichev VB, Shirobokov IG, Rogaev EI. Genomic analysis of a novel Neanderthal from Mezmaiskaya Cave provides insights into the genetic relationships of Middle Palaeolithic populations. Sci Rep 2022; 12:13016. [PMID: 35906446 PMCID: PMC9338269 DOI: 10.1038/s41598-022-16164-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2022] [Accepted: 07/05/2022] [Indexed: 11/09/2022] Open
Abstract
The Mezmaiskaya cave is located on the North Caucasus near the border that divides Europe and Asia. Previously, fossil remains for two Neanderthals were reported from Mezmaiskaya Cave. A tooth from the third archaic hominin specimen (Mezmaiskaya 3) was retrieved from layer 3 in Mezmaiskaya Cave. We performed genome sequencing of Mezmaiskaya 3. Analysis of partial nuclear genome sequence revealed that it belongs to a Homo sapiens neanderthalensis female. Based on a high-coverage mitochondrial genome sequence, we demonstrated that the relationships of Mezmaiskaya 3 to Mezmaiskaya 1 and Stajnia S5000 individuals were closer than those to other Neanderthals. Our data demonstrate the close genetic connections between the early Middle Palaeolithic Neanderthals that were replaced by genetically distant later group in the same geographic areas. Based on mitochondrial DNA (mtDNA) data, we suggest that Mezmaiskaya 3 was the latest Neanderthal individual from the early Neanderthal’s branches. We proposed a hierarchical nomenclature for the mtDNA haplogroups of Neanderthals. In addition, we retrieved ancestral mtDNA mutations in presumably functional sites fixed in the Neanderthal clades, and also provided the first data showing mtDNA heteroplasmy in Neanderthal specimen.
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Affiliation(s)
- Tatiana V Andreeva
- Center for Genetics and Life Science, Sirius University of Science and Technology, Sochi, Russia, 354340. .,Laboratory of Evolutionary Genomics, Department of Genomics and Human Genetics, Vavilov Institute of General Genetics, Russian Academy of Sciences, Moscow, Russia, 119333. .,Faculty of Biology, Centre for Genetics and Genetic Technologies, Lomonosov Moscow State University, Moscow, Russia, 119192.
| | - Andrey D Manakhov
- Center for Genetics and Life Science, Sirius University of Science and Technology, Sochi, Russia, 354340.,Laboratory of Evolutionary Genomics, Department of Genomics and Human Genetics, Vavilov Institute of General Genetics, Russian Academy of Sciences, Moscow, Russia, 119333.,Faculty of Biology, Centre for Genetics and Genetic Technologies, Lomonosov Moscow State University, Moscow, Russia, 119192
| | - Fedor E Gusev
- Center for Genetics and Life Science, Sirius University of Science and Technology, Sochi, Russia, 354340.,Laboratory of Evolutionary Genomics, Department of Genomics and Human Genetics, Vavilov Institute of General Genetics, Russian Academy of Sciences, Moscow, Russia, 119333.,Faculty of Biology, Centre for Genetics and Genetic Technologies, Lomonosov Moscow State University, Moscow, Russia, 119192
| | - Anton D Patrikeev
- Laboratory of Evolutionary Genomics, Department of Genomics and Human Genetics, Vavilov Institute of General Genetics, Russian Academy of Sciences, Moscow, Russia, 119333
| | | | | | - Ivan G Shirobokov
- Peter the Great Museum of Anthropology and Ethnography (Kunstkamera), Russian Academy of Sciences, St. Petersburg, Russia, 199034
| | - Evgeny I Rogaev
- Center for Genetics and Life Science, Sirius University of Science and Technology, Sochi, Russia, 354340. .,Laboratory of Evolutionary Genomics, Department of Genomics and Human Genetics, Vavilov Institute of General Genetics, Russian Academy of Sciences, Moscow, Russia, 119333. .,Faculty of Biology, Centre for Genetics and Genetic Technologies, Lomonosov Moscow State University, Moscow, Russia, 119192. .,Department of Psychiatry, University of Massachusetts Medical School, Worcester, MA, 01604, USA.
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14
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Zubova AV, Moiseyev VG, Kulkov AM, Otcherednoy AK, Markin SV, Kolobova KA. Maxillary second molar from the Rozhok I Micoquian site (Azov Sea region): Another link between Eastern Europe and Siberia. J Hum Evol 2022; 168:103209. [PMID: 35617848 DOI: 10.1016/j.jhevol.2022.103209] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2021] [Revised: 04/12/2022] [Accepted: 04/13/2022] [Indexed: 11/29/2022]
Affiliation(s)
- Alisa V Zubova
- Peter the Great Museum of Anthropology and Ethnography (Kunstkamera), Russian Academy of Sciences, Universitetskaya emb. 3, St. Petersburg, 199034, Russia; Institute of Archaeology and Ethnography, Siberian Branch of the Russian Academy of Sciences, Lavrentieva av., 17, Novosibirsk, 630090, Russia.
| | - Vyacheslav G Moiseyev
- Peter the Great Museum of Anthropology and Ethnography (Kunstkamera), Russian Academy of Sciences, Universitetskaya emb. 3, St. Petersburg, 199034, Russia
| | - Alexander M Kulkov
- Saint Petersburg State University, Universitetskaya emb. 7-9, St. Petersburg, 199034, Russia
| | - Aleksander K Otcherednoy
- Institute for the History of Material Culture, Russian Academy of Sciences, Dvortsovaya emb. 18, St. Petersburg, 191186, Russia
| | - Sergey V Markin
- Institute of Archaeology and Ethnography, Siberian Branch of the Russian Academy of Sciences, Lavrentieva av., 17, Novosibirsk, 630090, Russia
| | - Ksenia A Kolobova
- Institute of Archaeology and Ethnography, Siberian Branch of the Russian Academy of Sciences, Lavrentieva av., 17, Novosibirsk, 630090, Russia
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15
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A Middle Pleistocene Denisovan molar from the Annamite Chain of northern Laos. Nat Commun 2022; 13:2557. [PMID: 35581187 PMCID: PMC9114389 DOI: 10.1038/s41467-022-29923-z] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2021] [Accepted: 04/05/2022] [Indexed: 11/17/2022] Open
Abstract
The Pleistocene presence of the genus Homo in continental Southeast Asia is primarily evidenced by a sparse stone tool record and rare human remains. Here we report a Middle Pleistocene hominin specimen from Laos, with the discovery of a molar from the Tam Ngu Hao 2 (Cobra Cave) limestone cave in the Annamite Mountains. The age of the fossil-bearing breccia ranges between 164–131 kyr, based on the Bayesian modelling of luminescence dating of the sedimentary matrix from which it was recovered, U-series dating of an overlying flowstone, and U-series–ESR dating of associated faunal teeth. Analyses of the internal structure of the molar in tandem with palaeoproteomic analyses of the enamel indicate that the tooth derives from a young, likely female, Homo individual. The close morphological affinities with the Xiahe specimen from China indicate that they belong to the same taxon and that Tam Ngu Hao 2 most likely represents a Denisovan. Evidence for the presence of Homo during the Middle Pleistocene is limited in continental Southeast Asia. Here, the authors report a hominin molar from Tam Ngu Hao 2 (Cobra Cave), dated to 164–131 kyr. They use morphological and paleoproteomic analysis to show that it likely belonged to a female Denisovan.
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16
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A Multi-Method Approach for Deciphering Rockshelter Microstratigraphies—The Role of the Sodicho Rockshelter (SW Ethiopia) as a Geoarchaeological Archive. GEOSCIENCES 2022. [DOI: 10.3390/geosciences12020092] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
The Sodicho Rockshelter in the southwestern Ethiopian Highlands presents a unique site that contains sediments of Upper Pleistocene and Holocene occupation phases of hunter-gatherer communities. Excavations and previous geoarchaeological research provided a first 14C chronostratigraphic framework for the last 27 ka cal BP, which supports the hypothesis of a potential environmental refugium during the Late Glacial Maximum (LGM, ~21 ± 2 ka). Nonetheless, it is necessary to extend the preliminary interpretation of stone tool assemblages, and the geoarchaeological analyses carried out so far to provide in-depth information on prehistoric human behavior at the site under changing climatic and environmental conditions. In this study, we reinvestigate the complex stratigraphy and the paleoclimatic context of Sodicho in order to expand the knowledge about site formation, post-depositional disturbances, weathering influences, and the anthropogenic impact on the sediment deposits. Micromorphological observations and the determination of active pedogenic oxides offered a more detailed look at the microstratigraphic record in relation to shifting moisture conditions during the African Humid Period (AHP, ~15 − 5 ka). Sediment alteration and reworking are connected to the influence of sheet flow, biological activity, and human impacts such as dumping activity and site maintenance. A comparison with black carbon (BC) analyses and a qualitative phytolith ratio (quantification of dark and light phytoliths) provided evidence for variations in human fire intensity. Our collaborative and multidisciplinary approach demonstrates how the complex formation of a rockshelter site in a tropical setting with changing climatic and anthropogenic impacts can be tackled.
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17
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Blinkhorn J, Achyuthan H, Durcan J, Roberts P, Ilgner J. Constraining the chronology and ecology of Late Acheulean and Middle Palaeolithic occupations at the margins of the monsoon. Sci Rep 2021; 11:19665. [PMID: 34611193 PMCID: PMC8492674 DOI: 10.1038/s41598-021-98897-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2021] [Accepted: 09/07/2021] [Indexed: 02/08/2023] Open
Abstract
South Asia hosts the world's youngest Acheulean sites, with dated records typically restricted to sub-humid landscapes. The Thar Desert marks a major adaptive boundary between monsoonal Asia to the east and the Saharo-Arabian desert belt to the west, making it a key threshold to examine patterns of hominin ecological adaptation and its impacts on patterns of behaviour, demography and dispersal. Here, we investigate Palaeolithic occupations at the western margin of the South Asian monsoon at Singi Talav, undertaking new chronometric, sedimentological and palaeoecological studies of Acheulean and Middle Palaeolithic occupation horizons. We constrain occupations of the site between 248 and 65 thousand years ago. This presents the first direct palaeoecological evidence for landscapes occupied by South Asian Acheulean-producing populations, most notably in the main occupation horizon dating to 177 thousand years ago. Our results illustrate the potential role of the Thar Desert as an ecological, and demographic, frontier to Palaeolithic populations.
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Affiliation(s)
- James Blinkhorn
- Pan African Evolution Research Group, Max Planck Institute for the Science of Human History, Jena, Germany.
- Department of Geography, Centre for Quaternary Research, Royal Holloway, University of London, London, UK.
| | - Hema Achyuthan
- Institute of Ocean Management, Anna University, Chennai, India
| | - Julie Durcan
- School of Geography and the Environment, University of Oxford, Oxford, UK
| | - Patrick Roberts
- Department of Archaeology, Max Planck Institute for the Science of Human History, Jena, Germany
| | - Jana Ilgner
- Department of Archaeology, Max Planck Institute for the Science of Human History, Jena, Germany
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18
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Blanco G, Sánchez-Marco A, Negro JJ. Night Capture of Roosting Cave Birds by Neanderthals: An Actualistic Approach. Front Ecol Evol 2021. [DOI: 10.3389/fevo.2021.733062] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023] Open
Abstract
Evidence is accumulating on the regular and systematic Neanderthal exploitation of birds. However, the motivations, mechanisms, and circumstances underlying this behavior remains little explored despite their potential implications on Neanderthal ecology and capabilities. Fossil remains of choughs (Pyrrhocorax, Corvidae) are among the most abundant in cave sites with Mousterian technology. We reviewed the evidence showing that Neanderthals processed choughs for food, and confirmed that it occurred frequently over a widespread spatial and temporal scale. This lead us to propose the hypothesis that the cave-like refuge is the keystone resource connecting Neanderthals and choughs captured at night in rocky shelters eventually used by both species. By adopting an actualistic approach, we documented the patterns of refuge use and population dynamics of communally roosting choughs, the strategies and technology currently used to capture them, and their behavioral response against experimental human predators at night. Actualistic experiments showed that large numbers of choughs can be captured without highly sophisticated tools at night regularly and periodically, due to their occupation year-round during long-term periods of the same nocturnal shelters, the constant turnover of individuals, and their high site tenacity at these roost-sites even after recurrent disturbance and predation. Captures even with bare hands are further facilitated because choughs tend to flee confused into the cavity in darkness when dazzled and cornered by human (experimental) predators. Given the extreme difficulty of daylight chough capturing in open country, nocturnal hunting with the help of fire in the roosting caves and consumption in situ are proposed as the most plausible explanations for the strong association of choughs and Neanderthals in fossil assemblages. Night hunting of birds has implications for the social, anatomical, technological, and cognitive capacities of Neanderthals.
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19
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Heydari-Guran S, Benazzi S, Talamo S, Ghasidian E, Hariri N, Oxilia G, Asiabani S, Azizi F, Naderi R, Safaierad R, Hublin JJ, Foley RA, Lahr MM. The discovery of an in situ Neanderthal remain in the Bawa Yawan Rockshelter, West-Central Zagros Mountains, Kermanshah. PLoS One 2021; 16:e0253708. [PMID: 34437543 PMCID: PMC8389444 DOI: 10.1371/journal.pone.0253708] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2021] [Accepted: 06/11/2021] [Indexed: 11/19/2022] Open
Abstract
Neanderthal extinction has been a matter of debate for many years. New discoveries, better chronologies and genomic evidence have done much to clarify some of the issues. This evidence suggests that Neanderthals became extinct around 40,000–37,000 years before present (BP), after a period of coexistence with Homo sapiens of several millennia, involving biological and cultural interactions between the two groups. However, the bulk of this evidence relates to Western Eurasia, and recent work in Central Asia and Siberia has shown that there is considerable local variation. Southwestern Asia, despite having a number of significant Neanderthal remains, has not played a major part in the debate over extinction. Here we report a Neanderthal deciduous canine from the site of Bawa Yawan in the West-Central Zagros Mountains of Iran. The tooth is associated with Zagros Mousterian lithics, and its context is preliminary dated to between ~43,600 and ~41,500 years ago.
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Affiliation(s)
- Saman Heydari-Guran
- Stiftung Neanderthal Museum, Mettmann, Germany
- Department of Prehistoric Archaeology University of Cologne, Cologne, Germany
- DiyarMehr Centre for Palaeolithic Research, Kermanshah, Iran
- * E-mail:
| | - Stefano Benazzi
- Department of Cultural Heritage, University of Bologna, Bologna, Italy
- Department of Human Evolution, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Sahra Talamo
- Department of Human Evolution, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
- Department of Chemistry G. Ciamician, Alma Mater Studiorum, University of Bologna, Bologna, Italy
| | - Elham Ghasidian
- Stiftung Neanderthal Museum, Mettmann, Germany
- Department of Prehistoric Archaeology University of Cologne, Cologne, Germany
| | - Nemat Hariri
- Department of Prehistoric Archaeology University of Cologne, Cologne, Germany
- Department of Archaeology, University of Mohaghegh Ardabili University, Ardabil, Iran
| | - Gregorio Oxilia
- Department of Cultural Heritage, University of Bologna, Bologna, Italy
| | - Samran Asiabani
- DiyarMehr Centre for Palaeolithic Research, Kermanshah, Iran
- Department of Architecture, Faculty of Art and Architecture, Bu-Ali Sina University, Hamedan, Iran
| | - Faramarz Azizi
- DiyarMehr Centre for Palaeolithic Research, Kermanshah, Iran
| | - Rahmat Naderi
- DiyarMehr Centre for Palaeolithic Research, Kermanshah, Iran
| | - Reza Safaierad
- Department of Physical Geography, University of Tehran, Tehran, Iran
| | - Jean-Jacques Hublin
- Department of Human Evolution, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
- Collège de France, 11 Place Marcelin Berthelot, Paris, France
| | - Robert A. Foley
- Leverhulme Centre for Human Evolutionary Studies, Department of Archaeology, University of Cambridge, Cambridge, United Kingdom
| | - Marta M. Lahr
- Leverhulme Centre for Human Evolutionary Studies, Department of Archaeology, University of Cambridge, Cambridge, United Kingdom
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20
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Abstract
Blood group systems were the first phenotypic markers used in anthropology to decipher the origin of populations, their migratory movements, and their admixture. The recent emergence of new technologies based on the decoding of nucleic acids from an individual’s entire genome has relegated them to their primary application, blood transfusion. Thus, despite the finer mapping of the modern human genome in relation to Neanderthal and Denisova populations, little is known about red cell blood groups in these archaic populations. Here we analyze the available high-quality sequences of three Neanderthals and one Denisovan individuals for 7 blood group systems that are used today in transfusion (ABO including H/Se, Rh (Rhesus), Kell, Duffy, Kidd, MNS, Diego). We show that Neanderthal and Denisova were polymorphic for ABO and shared blood group alleles recurrent in modern Sub-Saharan populations. Furthermore, we found ABO-related alleles currently preventing from viral gut infection and Neanderthal RHD and RHCE alleles nowadays associated with a high risk of hemolytic disease of the fetus and newborn. Such a common blood group pattern across time and space is coherent with a Neanderthal population of low genetic diversity exposed to low reproductive success and with their inevitable demise. Lastly, we connect a Neanderthal RHD allele to two present-day Aboriginal Australian and Papuan, suggesting that a segment of archaic genome was introgressed in this gene in non-Eurasian populations. While contributing to both the origin and late evolutionary history of Neanderthal and Denisova, our results further illustrate that blood group systems are a relevant piece of the puzzle helping to decipher it.
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21
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Salazar-García DC, Power RC, Rudaya N, Kolobova K, Markin S, Krivoshapkin A, Henry AG, Richards MP, Viola B. Dietary evidence from Central Asian Neanderthals: A combined isotope and plant microremains approach at Chagyrskaya Cave (Altai, Russia). J Hum Evol 2021; 156:102985. [PMID: 34051612 DOI: 10.1016/j.jhevol.2021.102985] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2019] [Revised: 03/03/2021] [Accepted: 03/03/2021] [Indexed: 10/21/2022]
Abstract
Neanderthals are known primarily from their habitation of Western Eurasia, but they also populated large expanses of Northern Asia for thousands of years. Owing to a sparse archaeological record, relatively little is known about these eastern Neanderthal populations. Unlike in their western range, there are limited zooarchaeological and paleobotanical studies that inform us about the nature of their subsistence. Here, we perform a combined analysis of carbon and nitrogen stable isotopes on bone collagen and microbotanical remains in dental calculus to reconstruct the diet of eastern Neanderthals at Chagyrskaya Cave in the Altai Mountains of Southern Siberia, Russia. Stable isotopes identify one individual as possessing a high trophic level due to the hunting of large- and medium-sized ungulates, while the analysis of dental calculus also indicates the presence of plants in the diet of this individual and others from the site. These findings indicate eastern Neanderthals may have had broadly similar subsistence patterns to those elsewhere in their range.
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Affiliation(s)
- Domingo C Salazar-García
- Department of Human Evolution, Max-Planck Institute for Evolutionary Anthropology, Leipzig, Germany; Departament de Prehistòria, Arqueologia I Història Antiga, Universitat de València, València, Spain; Grupo de Investigación en Prehistoria IT-1223-19 (UPV-EHU)/IKERBASQUE-Basque Foundation for Science, Vitoria, Spain; Department of Geological Sciences, University of Cape Town, Cape Town, South Africa.
| | - Robert C Power
- Department of Human Evolution, Max-Planck Institute for Evolutionary Anthropology, Leipzig, Germany; Institut für Vor- und Frühgeschichtliche Archäologie und Provinzialrömische Archäologie, Ludwig-Maximilians-Universität München, Schellingstraße, 1280799, München, Germany.
| | - Natalia Rudaya
- Institute for Archaeology and Ethnography, Siberian Branch, Russian Academy of Sciences, Pr. Akademika Lavrentieva 17, Novosibirsk, 630090, Russia
| | - Ksenya Kolobova
- Institute for Archaeology and Ethnography, Siberian Branch, Russian Academy of Sciences, Pr. Akademika Lavrentieva 17, Novosibirsk, 630090, Russia
| | - Sergey Markin
- Institute for Archaeology and Ethnography, Siberian Branch, Russian Academy of Sciences, Pr. Akademika Lavrentieva 17, Novosibirsk, 630090, Russia
| | - Andrey Krivoshapkin
- Institute for Archaeology and Ethnography, Siberian Branch, Russian Academy of Sciences, Pr. Akademika Lavrentieva 17, Novosibirsk, 630090, Russia
| | - Amanda G Henry
- Department of Archaeological Sciences, Faculty of Archaeology, Leiden University, Leiden, The Netherlands
| | | | - Bence Viola
- Department of Anthropology, University of Toronto, Toronto, Canada
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22
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Crowder DW, Illan JG. Expansion of organic agriculture. NATURE FOOD 2021; 2:324-325. [PMID: 37117729 DOI: 10.1038/s43016-021-00288-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/30/2023]
Affiliation(s)
- David W Crowder
- Department of Entomology, Washington State University, Pullman, WA, USA.
| | - Javier G Illan
- Department of Entomology, Washington State University, Pullman, WA, USA
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Vernot B, Zavala EI, Gómez-Olivencia A, Jacobs Z, Slon V, Mafessoni F, Romagné F, Pearson A, Petr M, Sala N, Pablos A, Aranburu A, de Castro JMB, Carbonell E, Li B, Krajcarz MT, Krivoshapkin AI, Kolobova KA, Kozlikin MB, Shunkov MV, Derevianko AP, Viola B, Grote S, Essel E, Herráez DL, Nagel S, Nickel B, Richter J, Schmidt A, Peter B, Kelso J, Roberts RG, Arsuaga JL, Meyer M. Unearthing Neanderthal population history using nuclear and mitochondrial DNA from cave sediments. Science 2021; 372:science.abf1667. [PMID: 33858989 DOI: 10.1126/science.abf1667] [Citation(s) in RCA: 45] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2020] [Accepted: 03/31/2021] [Indexed: 12/15/2022]
Abstract
Bones and teeth are important sources of Pleistocene hominin DNA, but are rarely recovered at archaeological sites. Mitochondrial DNA (mtDNA) has been retrieved from cave sediments but provides limited value for studying population relationships. We therefore developed methods for the enrichment and analysis of nuclear DNA from sediments and applied them to cave deposits in western Europe and southern Siberia dated to between 200,000 and 50,000 years ago. We detected a population replacement in northern Spain about 100,000 years ago, which was accompanied by a turnover of mtDNA. We also identified two radiation events in Neanderthal history during the early part of the Late Pleistocene. Our work lays the ground for studying the population history of ancient hominins from trace amounts of nuclear DNA in sediments.
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Affiliation(s)
- Benjamin Vernot
- Department of Evolutionary Genetics, Max-Planck-Institute for Evolutionary Anthropology, Leipzig, Germany.
| | - Elena I Zavala
- Department of Evolutionary Genetics, Max-Planck-Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Asier Gómez-Olivencia
- Departamento de Geología, Facultad de Ciencia y Tecnología, Universidad del País Vasco-Euskal Herriko Unibertsitatea (UPV/EHU), Leioa, Spain.,Sociedad de Ciencias Aranzadi, Donostia-San Sebastián, Spain.,Centro Mixto UCM-ISCIII de Evolución y Comportamiento Humanos, Madrid, Spain
| | - Zenobia Jacobs
- Centre for Archaeological Science, School of Earth, Atmospheric and Life Sciences, University of Wollongong, Wollongong, New South Wales, Australia.,Australian Research Council (ARC) Centre of Excellence for Australian Biodiversity and Heritage, University of Wollongong, Wollongong, New South Wales, Australia
| | - Viviane Slon
- Department of Evolutionary Genetics, Max-Planck-Institute for Evolutionary Anthropology, Leipzig, Germany.,Department of Anatomy and Anthropology and Department of Human Molecular Genetics and Biochemistry, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.,The Dan David Center for Human Evolution and Biohistory Research, Tel Aviv University, 6997801 Tel Aviv, Israel
| | - Fabrizio Mafessoni
- Department of Evolutionary Genetics, Max-Planck-Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Frédéric Romagné
- Department of Evolutionary Genetics, Max-Planck-Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Alice Pearson
- Department of Evolutionary Genetics, Max-Planck-Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Martin Petr
- Department of Evolutionary Genetics, Max-Planck-Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Nohemi Sala
- Centro Mixto UCM-ISCIII de Evolución y Comportamiento Humanos, Madrid, Spain.,Centro Nacional de Investigación Sobre la Evolución Humana (CENIEH), Burgos, Spain
| | - Adrián Pablos
- Centro Mixto UCM-ISCIII de Evolución y Comportamiento Humanos, Madrid, Spain.,Centro Nacional de Investigación Sobre la Evolución Humana (CENIEH), Burgos, Spain
| | - Arantza Aranburu
- Departamento de Geología, Facultad de Ciencia y Tecnología, Universidad del País Vasco-Euskal Herriko Unibertsitatea (UPV/EHU), Leioa, Spain.,Sociedad de Ciencias Aranzadi, Donostia-San Sebastián, Spain
| | | | - Eudald Carbonell
- Institut Català de Paleoecologia Humana i Evolució Social (IPHES), Universitat Rovira i Virgili, Tarragona, Spain.,Àrea de Prehistòria, Universitat Rovira i Virgili, Tarragona, Spain
| | - Bo Li
- Centre for Archaeological Science, School of Earth, Atmospheric and Life Sciences, University of Wollongong, Wollongong, New South Wales, Australia.,Australian Research Council (ARC) Centre of Excellence for Australian Biodiversity and Heritage, University of Wollongong, Wollongong, New South Wales, Australia
| | - Maciej T Krajcarz
- Institute of Geological Sciences, Polish Academy of Sciences, Warszawa, Poland
| | - Andrey I Krivoshapkin
- Institute of Archaeology and Ethnography, Russian Academy of Sciences, Novosibirsk, Russia.,Novosibirsk State University, Novosibirsk, Russia
| | - Kseniya A Kolobova
- Institute of Archaeology and Ethnography, Russian Academy of Sciences, Novosibirsk, Russia
| | - Maxim B Kozlikin
- Institute of Archaeology and Ethnography, Russian Academy of Sciences, Novosibirsk, Russia
| | - Michael V Shunkov
- Institute of Archaeology and Ethnography, Russian Academy of Sciences, Novosibirsk, Russia
| | - Anatoly P Derevianko
- Institute of Archaeology and Ethnography, Russian Academy of Sciences, Novosibirsk, Russia
| | - Bence Viola
- Department of Anthropology, University of Toronto, Toronto, Ontario, Canada
| | - Steffi Grote
- Department of Evolutionary Genetics, Max-Planck-Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Elena Essel
- Department of Evolutionary Genetics, Max-Planck-Institute for Evolutionary Anthropology, Leipzig, Germany
| | - David López Herráez
- Department of Evolutionary Genetics, Max-Planck-Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Sarah Nagel
- Department of Evolutionary Genetics, Max-Planck-Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Birgit Nickel
- Department of Evolutionary Genetics, Max-Planck-Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Julia Richter
- Department of Evolutionary Genetics, Max-Planck-Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Anna Schmidt
- Department of Evolutionary Genetics, Max-Planck-Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Benjamin Peter
- Department of Evolutionary Genetics, Max-Planck-Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Janet Kelso
- Department of Evolutionary Genetics, Max-Planck-Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Richard G Roberts
- Centre for Archaeological Science, School of Earth, Atmospheric and Life Sciences, University of Wollongong, Wollongong, New South Wales, Australia.,Australian Research Council (ARC) Centre of Excellence for Australian Biodiversity and Heritage, University of Wollongong, Wollongong, New South Wales, Australia
| | - Juan-Luis Arsuaga
- Centro Mixto UCM-ISCIII de Evolución y Comportamiento Humanos, Madrid, Spain.,Departamento de Paleontología, Facultad Ciencias Geológicas, Universidad Complutense de Madrid, Madrid, Spain
| | - Matthias Meyer
- Department of Evolutionary Genetics, Max-Planck-Institute for Evolutionary Anthropology, Leipzig, Germany.
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24
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Abstract
The presence of the ‘Keilmesser-concept’ in late Middle Paleolithic assemblages of Central and Eastern Europe defines the eponymous ‘Keilmessergruppen’. The site of Lichtenberg (Lower Saxony, Germany) was discovered in 1987 and yielded one of the most important Keilmessergruppen assemblages of the northwestern European Plain. At that time, researchers used the bifacial backed knives to define a new type, the ‘Lichtenberger Keilmesser’, which they characterized by an aesthetic form-function concept with a specific range of morphological variability on the one hand, and a standardized convex cutting edge one the other hand. Thereby, a shape continuum was observed between different form-function concepts in the Lichtenberg assemblage, from Keilmesser through to Faustkeilblätter and handaxes. In a contrasting view, it was recently suggested that the morphology of Keilmesser, including what is defined here as type Lichtenberg, is the result of solutions to establish and maintain edge angles during resharpening. With the intention to evaluate these contrasting hypotheses, I conducted a re-analysis of the Keilmesser from Lichtenberg and their relationship to central German late Middle Paleolithic knives, using 3D geometric morphometric analyses and an automatized approach to measure edge angles on 3D models. Despite a morphological overlap of the tools from both regions, I could show that the Lichtenberg Keilmesser concept refers to one solution to create a tool with specific functionalities, like potentially cutting, prehension, and reusability. To establish and maintain its functionality, certain angles where created by the knappers along the active edges. This behavior resulted in specific shapes and positions of the active parts and created what looks like a standardized or template morphology of this Keilmesser type.
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Affiliation(s)
- Marcel Weiss
- Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
- * E-mail:
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25
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New perspectives on Neanderthal dispersal and turnover from Stajnia Cave (Poland). Sci Rep 2020; 10:14778. [PMID: 32901061 PMCID: PMC7479612 DOI: 10.1038/s41598-020-71504-x] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2020] [Accepted: 08/17/2020] [Indexed: 02/03/2023] Open
Abstract
The Micoquian is the broadest and longest enduring cultural facies of the Late Middle Palaeolithic that spread across the periglacial and boreal environments of Europe between Eastern France, Poland, and Northern Caucasus. Here, we present new data from the archaeological record of Stajnia Cave (Poland) and the paleogenetic analysis of a Neanderthal molar S5000, found in a Micoquian context. Our results demonstrate that the mtDNA genome of Stajnia S5000 dates to MIS 5a making the tooth the oldest Neanderthal specimen from Central-Eastern Europe. Furthermore, S5000 mtDNA has the fewest number of differences to mtDNA of Mezmaiskaya 1 Neanderthal from Northern Caucasus, and is more distant from almost contemporaneous Neanderthals of Scladina and Hohlenstein-Stadel. This observation and the technological affinity between Poland and the Northern Caucasus could be the result of increased mobility of Neanderthals that changed their subsistence strategy for coping with the new low biomass environments and the increased foraging radius of gregarious animals. The Prut and Dniester rivers were probably used as the main corridors of dispersal. The persistence of the Micoquian techno-complex in South-Eastern Europe infers that this axis of mobility was also used at the beginning of MIS 3 when a Neanderthal population turnover occurred in the Northern Caucasus.
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26
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Delpiano D, Uthmeier T. Techno-functional and 3D shape analysis applied for investigating the variability of backed tools in the Late Middle Paleolithic of Central Europe. PLoS One 2020; 15:e0236548. [PMID: 32813722 PMCID: PMC7446931 DOI: 10.1371/journal.pone.0236548] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2020] [Accepted: 07/01/2020] [Indexed: 11/21/2022] Open
Abstract
In the Late Middle Paleolithic of Central Europe, two main cultural complexes have been distinguished: the Micoquian or Keilmessergruppe (KMG), and the Mousterian. Their differences mainly consist in the frequence of some retouched tools and the presence of bifacial technology. When these industries coexist, one element of discussion is the application of different concepts to manufacture tools with the same techno-functionality. This is particularly true for backed artifacts, such as Keilmesser (backed, asymmetrical bifacially-shaped knives) opposed to flake-tools equipped with a natural or knapped back. We conducted a techno-functional analysis of the backed tools from the G-Layer-Complex of Sesselfelsgrotte, one of the main Late Middle Paleolithic sequences in Central Europe, characterized by a combination of KMG and Mousterian aspects. In order to better understand the morpho-metrical data, 3D scans were used for recording technical features and performing semi-automatic geometric morphometrics. Results indicate that the techno-functional schemes of Keilmesser show a moderate variability and often overlap with the schemes of other typological groups. Within bifacial backed knives, a process of imitation of unifacial flake tools' functionaly was recognized particularly in the cutting edge manufacturing. Keilmesser proved to be the long-life, versatile version of backed flake-tools, also due to the recurrent valence as both tool and core. This is why Keilmesser represent an ideal strategic blank when a mobile and multi-functional tool is needed. Based on these data, it is assumed that the relationship between Mousterian and KMG is deeply rooted and the emergence of KMG aspects could be related to constrained situations characterizing the long cold stages of the Early Weichselian. A higher regional mobility caused by the comparably low predictability of resources characterized the subsistence tactics of Neanderthal groups especially at the borders of their overall distribution. For this reason, Keilmesser could have represented an ecological answer before possibly becoming a marker of cultural identity.
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Affiliation(s)
- Davide Delpiano
- Dipartimento di Studi Umanistici, Sezione di Scienze Preistoriche e Antropologiche, Università degli Studi di Ferrara, Ferrara, Italy
| | - Thorsten Uthmeier
- Department of the Old World and Asian Studies, Friedrich-Alexander-University of Erlangen-Nürnberg, Erlangen, Germany
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27
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Kuzmin YV, Keates SG. The chronology of hominin fossils from the Altai Mountains, Siberia: An alternative view. J Hum Evol 2020; 146:102834. [PMID: 32659509 DOI: 10.1016/j.jhevol.2020.102834] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2019] [Revised: 05/18/2020] [Accepted: 05/19/2020] [Indexed: 11/16/2022]
Affiliation(s)
- Yaroslav V Kuzmin
- Institute of Geology and Mineralogy, Siberian Branch of the Russian Academy of Sciences, Koptyug Ave. 3, Novosibirsk, 630090, Russia.
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28
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Mafessoni F, Grote S, de Filippo C, Slon V, Kolobova KA, Viola B, Markin SV, Chintalapati M, Peyrégne S, Skov L, Skoglund P, Krivoshapkin AI, Derevianko AP, Meyer M, Kelso J, Peter B, Prüfer K, Pääbo S. A high-coverage Neandertal genome from Chagyrskaya Cave. Proc Natl Acad Sci U S A 2020; 117:15132-15136. [PMID: 32546518 PMCID: PMC7334501 DOI: 10.1073/pnas.2004944117] [Citation(s) in RCA: 120] [Impact Index Per Article: 30.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023] Open
Abstract
We sequenced the genome of a Neandertal from Chagyrskaya Cave in the Altai Mountains, Russia, to 27-fold genomic coverage. We show that this Neandertal was a female and that she was more related to Neandertals in western Eurasia [Prüfer et al., Science 358, 655-658 (2017); Hajdinjak et al., Nature 555, 652-656 (2018)] than to Neandertals who lived earlier in Denisova Cave [Prüfer et al., Nature 505, 43-49 (2014)], which is located about 100 km away. About 12.9% of the Chagyrskaya genome is spanned by homozygous regions that are between 2.5 and 10 centiMorgans (cM) long. This is consistent with the fact that Siberian Neandertals lived in relatively isolated populations of less than 60 individuals. In contrast, a Neandertal from Europe, a Denisovan from the Altai Mountains, and ancient modern humans seem to have lived in populations of larger sizes. The availability of three Neandertal genomes of high quality allows a view of genetic features that were unique to Neandertals and that are likely to have been at high frequency among them. We find that genes highly expressed in the striatum in the basal ganglia of the brain carry more amino-acid-changing substitutions than genes expressed elsewhere in the brain, suggesting that the striatum may have evolved unique functions in Neandertals.
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Affiliation(s)
- Fabrizio Mafessoni
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, D-04103 Leipzig, Germany
| | - Steffi Grote
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, D-04103 Leipzig, Germany
| | - Cesare de Filippo
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, D-04103 Leipzig, Germany
| | - Viviane Slon
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, D-04103 Leipzig, Germany
| | - Kseniya A Kolobova
- Institute of Archaeology and Ethnography, Russian Academy of Sciences, 630090 Novosibirsk, Russia
| | - Bence Viola
- Department of Anthropology, University of Toronto, Toronto, ON M5S 2S2, Canada
| | - Sergey V Markin
- Institute of Archaeology and Ethnography, Russian Academy of Sciences, 630090 Novosibirsk, Russia
| | - Manjusha Chintalapati
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, D-04103 Leipzig, Germany
| | - Stephane Peyrégne
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, D-04103 Leipzig, Germany
| | - Laurits Skov
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, D-04103 Leipzig, Germany
| | - Pontus Skoglund
- Ancient Genomics Laboratory, Francis Crick Institute, NW1 1AT London, United Kingdom
| | - Andrey I Krivoshapkin
- Institute of Archaeology and Ethnography, Russian Academy of Sciences, 630090 Novosibirsk, Russia
| | - Anatoly P Derevianko
- Institute of Archaeology and Ethnography, Russian Academy of Sciences, 630090 Novosibirsk, Russia
| | - Matthias Meyer
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, D-04103 Leipzig, Germany
| | - Janet Kelso
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, D-04103 Leipzig, Germany
| | - Benjamin Peter
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, D-04103 Leipzig, Germany
| | - Kay Prüfer
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, D-04103 Leipzig, Germany
| | - Svante Pääbo
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, D-04103 Leipzig, Germany;
- Human Evolutionary Genomics Unit, Okinawa Institute of Science and Technology, Onna-son, 904-0495 Okinawa, Japan
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