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For: Meng M, Lee C, Bagdasarian M, Zeikus JG. Switching substrate preference of thermophilic xylose isomerase from D-xylose to D-glucose by redesigning the substrate binding pocket. Proc Natl Acad Sci U S A 1991;88:4015-9. [PMID: 2023950 PMCID: PMC51584 DOI: 10.1073/pnas.88.9.4015] [Citation(s) in RCA: 40] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]  Open
Number Cited by Other Article(s)
1
Jin L, Wan Q, Ouyang S, Zheng L, Cai X, Zhang X, Shen J, Jia D, Liu Z, Zheng Y. Isomerase and epimerase: overview and practical application in production of functional sugars. Crit Rev Food Sci Nutr 2023;64:13133-13148. [PMID: 37807720 DOI: 10.1080/10408398.2023.2260888] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/10/2023]
2
Wang ZK, Gong JS, Feng DT, Su C, Li H, Rao ZM, Lu ZM, Shi JS, Xu ZH. Geometric Remodeling of Nitrilase Active Pocket Based on ALF-Scanning Strategy To Enhance Aromatic Nitrile Substrate Preference and Catalytic Efficiency. Appl Environ Microbiol 2023;89:e0022023. [PMID: 37191513 PMCID: PMC10304902 DOI: 10.1128/aem.00220-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2023] [Accepted: 04/24/2023] [Indexed: 05/17/2023]  Open
3
Miyamoto RY, de Melo RR, de Mesquita Sampaio IL, de Sousa AS, Morais ER, Sargo CR, Zanphorlin LM. Paradigm shift in xylose isomerase usage: a novel scenario with distinct applications. Crit Rev Biotechnol 2021;42:693-712. [PMID: 34641740 DOI: 10.1080/07388551.2021.1962241] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
4
Jayaraman AB, Kandasamy T, Venkataraman D, S M. Rational design of Shewanella sp. l-arabinose isomerase for d-galactose isomerase activity under mesophilic conditions. Enzyme Microb Technol 2021;147:109796. [PMID: 33992411 DOI: 10.1016/j.enzmictec.2021.109796] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2020] [Revised: 03/23/2021] [Accepted: 03/24/2021] [Indexed: 02/07/2023]
5
Dokuzparmak C, Colak A, Kolcuoglu Y, Akatin MY, Ertunga NS, Tuncay FO. Development of Some Properties of a Thermophilic Recombinant Glucose Isomerase by Mutation. APPL BIOCHEM MICRO+ 2020. [DOI: 10.1134/s0003683820020052] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
6
Characterization of a mutant glucose isomerase from Thermoanaerobacterium saccharolyticum. J Ind Microbiol Biotechnol 2014;41:1581-9. [PMID: 25139657 DOI: 10.1007/s10295-014-1478-4] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2014] [Accepted: 06/18/2014] [Indexed: 10/24/2022]
7
Deng H, Chen S, Wu D, Chen J, Wu J. Heterologous expression and biochemical characterization of glucose isomerase from Thermobifida fusca. Bioprocess Biosyst Eng 2013;37:1211-9. [DOI: 10.1007/s00449-013-1093-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2013] [Accepted: 11/07/2013] [Indexed: 11/30/2022]
8
Directed evolution of xylose isomerase for improved xylose catabolism and fermentation in the yeast Saccharomyces cerevisiae. Appl Environ Microbiol 2012;78:5708-16. [PMID: 22685138 DOI: 10.1128/aem.01419-12] [Citation(s) in RCA: 104] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]  Open
9
Patel DH, Cho EJ, Kim HM, Choi IS, Bae HJ. Engineering of the catalytic site of xylose isomerase to enhance bioconversion of a non-preferential substrate. Protein Eng Des Sel 2012;25:331-6. [DOI: 10.1093/protein/gzs022] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
10
Umemoto Y, Shibata T, Araki T. D-xylose isomerase from a marine bacterium, Vibrio sp. strain XY-214, and D-xylulose production from β-1,3-xylan. MARINE BIOTECHNOLOGY (NEW YORK, N.Y.) 2012;14:10-20. [PMID: 21519808 DOI: 10.1007/s10126-011-9380-9] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/29/2010] [Accepted: 03/16/2011] [Indexed: 05/30/2023]
11
Borgi MA, Rhimi M, Bejar S. Involvement of alanine 103 residue in kinetic and physicochemical properties of glucose isomerases fromStreptomyces species. Biotechnol J 2007;2:254-9. [PMID: 17203501 DOI: 10.1002/biot.200600085] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
12
Besenmatter W, Kast P, Hilvert D. Relative tolerance of mesostable and thermostable protein homologs to extensive mutation. Proteins 2006;66:500-6. [PMID: 17096428 DOI: 10.1002/prot.21227] [Citation(s) in RCA: 53] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
13
Santa H, Kammonen J, Lehtonen O, Karimäki J, Pastinen O, Leisola M, Turunen O. Stochastic boundary molecular dynamics simulation of l-ribose in the active site of Actinoplanes missouriensis xylose isomerase and its Val135Asn mutant with improved reaction rate. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2005;1749:65-73. [PMID: 15848137 DOI: 10.1016/j.bbapap.2005.02.007] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2004] [Revised: 02/11/2005] [Accepted: 02/14/2005] [Indexed: 11/21/2022]
14
Bennett EM, Anand R, Allan PW, Hassan AEA, Hong JS, Levasseur DN, McPherson DT, Parker WB, Secrist JA, Sorscher EJ, Townes TM, Waud WR, Ealick SE. Designer gene therapy using an Escherichia coli purine nucleoside phosphorylase/prodrug system. ACTA ACUST UNITED AC 2004;10:1173-81. [PMID: 14700625 DOI: 10.1016/j.chembiol.2003.11.008] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
15
Tao Y, Fishman A, Bentley WE, Wood TK. Altering toluene 4-monooxygenase by active-site engineering for the synthesis of 3-methoxycatechol, methoxyhydroquinone, and methylhydroquinone. J Bacteriol 2004;186:4705-13. [PMID: 15231803 PMCID: PMC438599 DOI: 10.1128/jb.186.14.4705-4713.2004] [Citation(s) in RCA: 68] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
16
Vieille C, Zeikus GJ. Hyperthermophilic enzymes: sources, uses, and molecular mechanisms for thermostability. Microbiol Mol Biol Rev 2001;65:1-43. [PMID: 11238984 PMCID: PMC99017 DOI: 10.1128/mmbr.65.1.1-43.2001] [Citation(s) in RCA: 1392] [Impact Index Per Article: 60.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
17
D-Xylose (D-Glucose) Isomerase and Related Enzymes in Carbohydrate Synthesis. Top Curr Chem (Cham) 2001. [DOI: 10.1007/3-540-44422-x_5] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
18
Hartley BS, Hanlon N, Jackson RJ, Rangarajan M. Glucose isomerase: insights into protein engineering for increased thermostability. BIOCHIMICA ET BIOPHYSICA ACTA 2000;1543:294-335. [PMID: 11150612 DOI: 10.1016/s0167-4838(00)00246-6] [Citation(s) in RCA: 57] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
19
He X, Agnihotri G, Liu Hw HW. Novel enzymatic mechanisms in carbohydrate metabolism. Chem Rev 2000;100:4615-62. [PMID: 11749360 DOI: 10.1021/cr9902998] [Citation(s) in RCA: 73] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
20
Sriprapundh D, Vieille C, Zeikus JG. Molecular determinants of xylose isomerase thermal stability and activity: analysis of thermozymes by site-directed mutagenesis. PROTEIN ENGINEERING 2000;13:259-65. [PMID: 10810157 DOI: 10.1093/protein/13.4.259] [Citation(s) in RCA: 67] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
21
Chang C, Park BC, Lee DS, Suh SW. Crystal structures of thermostable xylose isomerases from Thermus caldophilus and Thermus thermophilus: possible structural determinants of thermostability. J Mol Biol 1999;288:623-34. [PMID: 10329168 DOI: 10.1006/jmbi.1999.2696] [Citation(s) in RCA: 41] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
22
Vieille C, Burdette DS, Zeikus JG. Thermozymes. BIOTECHNOLOGY ANNUAL REVIEW 1998;2:1-83. [PMID: 9704095 DOI: 10.1016/s1387-2656(08)70006-1] [Citation(s) in RCA: 108] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
23
Hu H, Shi YY, Wang CX. Exploring the interaction between D-xylose isomerase and D-xylose by free energy calculation. Proteins 1996;26:157-66. [PMID: 8916223 DOI: 10.1002/(sici)1097-0134(199610)26:2<157::aid-prot5>3.0.co;2-d] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
24
Bhosale SH, Rao MB, Deshpande VV. Molecular and industrial aspects of glucose isomerase. Microbiol Rev 1996. [PMID: 8801434 DOI: 10.1128/mmbr.60.2.280-300.1996] [Citation(s) in RCA: 167] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
25
Bhosale SH, Rao MB, Deshpande VV. Molecular and industrial aspects of glucose isomerase. Microbiol Rev 1996;60:280-300. [PMID: 8801434 PMCID: PMC239444 DOI: 10.1128/mr.60.2.280-300.1996] [Citation(s) in RCA: 163] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
26
Kristo P, Saarelainen R, Fagerström R, Aho S, Korhola M. Protein purification, and cloning and characterization of the cDNA and gene for xylose isomerase of barley. EUROPEAN JOURNAL OF BIOCHEMISTRY 1996;237:240-6. [PMID: 8620879 DOI: 10.1111/j.1432-1033.1996.0240n.x] [Citation(s) in RCA: 23] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
27
Whitaker RD, Cho Y, Cha J, Carrell HL, Glusker JP, Karplus PA, Batt CA. Probing the roles of active site residues in D-xylose isomerase. J Biol Chem 1995;270:22895-906. [PMID: 7559425 DOI: 10.1074/jbc.270.39.22895] [Citation(s) in RCA: 53] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]  Open
28
Vieille C, Hess JM, Kelly RM, Zeikus JG. xylA cloning and sequencing and biochemical characterization of xylose isomerase from Thermotoga neapolitana. Appl Environ Microbiol 1995;61:1867-75. [PMID: 7646024 PMCID: PMC167449 DOI: 10.1128/aem.61.5.1867-1875.1995] [Citation(s) in RCA: 84] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]  Open
29
Lavie A, Allen KN, Petsko GA, Ringe D. X-ray crystallographic structures of D-xylose isomerase-substrate complexes position the substrate and provide evidence for metal movement during catalysis. Biochemistry 1994;33:5469-80. [PMID: 8180169 DOI: 10.1021/bi00184a016] [Citation(s) in RCA: 96] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
30
Hsieh M, Hensley P, Brenowitz M, Fetrow J. A molecular model of the inducer binding domain of the galactose repressor of Escherichia coli. J Biol Chem 1994. [DOI: 10.1016/s0021-9258(17)36722-4] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
31
Meng M, Bagdasarian M, Zeikus JG. The role of active-site aromatic and polar residues in catalysis and substrate discrimination by xylose isomerase. Proc Natl Acad Sci U S A 1993;90:8459-63. [PMID: 8378319 PMCID: PMC47376 DOI: 10.1073/pnas.90.18.8459] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]  Open
32
Lowe SE, Jain MK, Zeikus JG. Biology, ecology, and biotechnological applications of anaerobic bacteria adapted to environmental stresses in temperature, pH, salinity, or substrates. Microbiol Rev 1993;57:451-509. [PMID: 8336675 PMCID: PMC372919 DOI: 10.1128/mr.57.2.451-509.1993] [Citation(s) in RCA: 57] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
33
Bogumil R, Kappl R, Hüttermann J, Sudfeldt C, Witzel H. X- and Q-band EPR studies on the two Mn(2+)-substituted metal-binding sites of D-xylose isomerase. EUROPEAN JOURNAL OF BIOCHEMISTRY 1993;213:1185-92. [PMID: 8389296 DOI: 10.1111/j.1432-1033.1993.tb17869.x] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
34
Collyer CA, Goldberg JD, Viehmann H, Blow DM, Ramsden NG, Fleet GW, Montgomery FJ, Grice P. Anomeric specificity of D-xylose isomerase. Biochemistry 1992;31:12211-8. [PMID: 1457418 DOI: 10.1021/bi00163a034] [Citation(s) in RCA: 26] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
35
Lambeir AM, Lauwereys M, Stanssens P, Mrabet NT, Snauwaert J, van Tilbeurgh H, Matthyssens G, Lasters I, De Maeyer M, Wodak SJ. Protein engineering of xylose (glucose) isomerase from Actinoplanes missouriensis. 2. Site-directed mutagenesis of the xylose binding site. Biochemistry 1992;31:5459-66. [PMID: 1610792 DOI: 10.1021/bi00139a006] [Citation(s) in RCA: 48] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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