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For: Kusakabe T, Richardson CC. Template recognition and ribonucleotide specificity of the DNA primase of bacteriophage T7. J Biol Chem 1997;272:5943-51. [PMID: 9038214 DOI: 10.1074/jbc.272.9.5943] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]  Open
Number Cited by Other Article(s)
1
Lipps G. Definition of the binding specificity of the T7 bacteriophage primase by analysis of a protein binding microarray using a thermodynamic model. Nucleic Acids Res 2024;52:4818-4829. [PMID: 38597656 PMCID: PMC11109968 DOI: 10.1093/nar/gkae215] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2023] [Revised: 01/26/2024] [Accepted: 03/13/2024] [Indexed: 04/11/2024]  Open
2
Soffer A, Eisdorfer SA, Ifrach M, Ilic S, Afek A, Schussheim H, Vilenchik D, Akabayov B. Inferring primase-DNA specific recognition using a data driven approach. Nucleic Acids Res 2021;49:11447-11458. [PMID: 34718733 PMCID: PMC8599759 DOI: 10.1093/nar/gkab956] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2021] [Revised: 10/01/2021] [Accepted: 10/04/2021] [Indexed: 12/11/2022]  Open
3
Mueller SH, Spenkelink LM, van Oijen AM. When proteins play tag: the dynamic nature of the replisome. Biophys Rev 2019;11:641-651. [PMID: 31273608 PMCID: PMC6682189 DOI: 10.1007/s12551-019-00569-4] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2019] [Accepted: 06/24/2019] [Indexed: 02/06/2023]  Open
4
Ilic S, Cohen S, Singh M, Tam B, Dayan A, Akabayov B. DnaG Primase-A Target for the Development of Novel Antibacterial Agents. Antibiotics (Basel) 2018;7:E72. [PMID: 30104489 PMCID: PMC6163395 DOI: 10.3390/antibiotics7030072] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2018] [Revised: 08/06/2018] [Accepted: 08/09/2018] [Indexed: 12/21/2022]  Open
5
Afek A, Ilic S, Horton J, Lukatsky DB, Gordan R, Akabayov B. DNA Sequence Context Controls the Binding and Processivity of the T7 DNA Primase. iScience 2018;2:141-147. [PMID: 30428370 PMCID: PMC6136900 DOI: 10.1016/j.isci.2018.03.019] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2017] [Revised: 12/30/2017] [Accepted: 03/05/2018] [Indexed: 11/16/2022]  Open
6
Peralta-Castro A, Baruch-Torres N, Brieba LG. Plant organellar DNA primase-helicase synthesizes RNA primers for organellar DNA polymerases using a unique recognition sequence. Nucleic Acids Res 2017;45:10764-10774. [PMID: 28977480 PMCID: PMC5737085 DOI: 10.1093/nar/gkx745] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2017] [Accepted: 08/24/2017] [Indexed: 11/14/2022]  Open
7
Identification of DNA primase inhibitors via a combined fragment-based and virtual screening. Sci Rep 2016;6:36322. [PMID: 27805033 PMCID: PMC5090872 DOI: 10.1038/srep36322] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2016] [Accepted: 10/14/2016] [Indexed: 11/12/2022]  Open
8
Lewis JS, Jergic S, Dixon NE. The E. coli DNA Replication Fork. Enzymes 2016;39:31-88. [PMID: 27241927 DOI: 10.1016/bs.enz.2016.04.001] [Citation(s) in RCA: 57] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
9
Towle-Weicksel JB, Cao Y, Crislip LJ, Thurlow DL, Crampton DJ. Chimeric proteins constructed from bacteriophage T7 gp4 and a putative primase-helicase from Arabidopsis thaliana. Mol Biol Rep 2014;41:7783-95. [PMID: 25098604 DOI: 10.1007/s11033-014-3671-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2013] [Accepted: 07/29/2014] [Indexed: 11/24/2022]
10
Duderstadt KE, Reyes-Lamothe R, van Oijen AM, Sherratt DJ. Replication-fork dynamics. Cold Spring Harb Perspect Biol 2014;6:cshperspect.a010157. [PMID: 23881939 DOI: 10.1101/cshperspect.a010157] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
11
Akabayov B, Lee SJ, Akabayov SR, Rekhi S, Zhu B, Richardson CC. DNA recognition by the DNA primase of bacteriophage T7: a structure-function study of the zinc-binding domain. Biochemistry 2010;48:1763-73. [PMID: 19206208 DOI: 10.1021/bi802123t] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
12
Hamdan SM, van Oijen AM. Timing, coordination, and rhythm: acrobatics at the DNA replication fork. J Biol Chem 2010;285:18979-83. [PMID: 20382733 PMCID: PMC2885174 DOI: 10.1074/jbc.r109.022939] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]  Open
13
Direct role for the RNA polymerase domain of T7 primase in primer delivery. Proc Natl Acad Sci U S A 2010;107:9099-104. [PMID: 20439755 DOI: 10.1073/pnas.1004220107] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
14
Perumal SK, Yue H, Hu Z, Spiering MM, Benkovic SJ. Single-molecule studies of DNA replisome function. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2009;1804:1094-112. [PMID: 19665592 DOI: 10.1016/j.bbapap.2009.07.022] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2009] [Revised: 07/08/2009] [Accepted: 07/28/2009] [Indexed: 11/16/2022]
15
Zhu B, Lee SJ, Richardson CC. An in trans interaction at the interface of the helicase and primase domains of the hexameric gene 4 protein of bacteriophage T7 modulates their activities. J Biol Chem 2009;284:23842-51. [PMID: 19574219 DOI: 10.1074/jbc.m109.026104] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
16
Kuchta RD, Stengel G. Mechanism and evolution of DNA primases. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2009;1804:1180-9. [PMID: 19540940 DOI: 10.1016/j.bbapap.2009.06.011] [Citation(s) in RCA: 106] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2009] [Revised: 05/11/2009] [Accepted: 06/02/2009] [Indexed: 01/31/2023]
17
Peyrane F, Selisko B, Decroly E, Vasseur JJ, Benarroch D, Canard B, Alvarez K. High-yield production of short GpppA- and 7MeGpppA-capped RNAs and HPLC-monitoring of methyltransfer reactions at the guanine-N7 and adenosine-2'O positions. Nucleic Acids Res 2007;35:e26. [PMID: 17259217 PMCID: PMC1851634 DOI: 10.1093/nar/gkl1119] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]  Open
18
Kato M, Ito T, Wagner G, Ellenberger T. A molecular handoff between bacteriophage T7 DNA primase and T7 DNA polymerase initiates DNA synthesis. J Biol Chem 2004;279:30554-62. [PMID: 15133047 DOI: 10.1074/jbc.m403485200] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
19
He ZG, Richardson CC. Effect of single-stranded DNA-binding proteins on the helicase and primase activities of the bacteriophage T7 gene 4 protein. J Biol Chem 2004;279:22190-7. [PMID: 15044449 DOI: 10.1074/jbc.m401100200] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
20
Takagi T, Walker AK, Sawa C, Diehn F, Takase Y, Blackwell TK, Buratowski S. The Caenorhabditis elegans mRNA 5'-capping enzyme. In vitro and in vivo characterization. J Biol Chem 2003;278:14174-84. [PMID: 12576476 DOI: 10.1074/jbc.m212101200] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]  Open
21
Lee SJ, Richardson CC. Essential lysine residues in the RNA polymerase domain of the gene 4 primase-helicase of bacteriophage T7. J Biol Chem 2001;276:49419-26. [PMID: 11673465 DOI: 10.1074/jbc.m108443200] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
22
Chowdhury K, Tabor S, Richardson CC. A unique loop in the DNA-binding crevice of bacteriophage T7 DNA polymerase influences primer utilization. Proc Natl Acad Sci U S A 2000;97:12469-74. [PMID: 11050188 PMCID: PMC18787 DOI: 10.1073/pnas.230448397] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
23
Frick DN, Richardson CC. Interaction of bacteriophage T7 gene 4 primase with its template recognition site. J Biol Chem 1999;274:35889-98. [PMID: 10585474 DOI: 10.1074/jbc.274.50.35889] [Citation(s) in RCA: 48] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
24
Frick DN, Kumar S, Richardson CC. Interaction of ribonucleoside triphosphates with the gene 4 primase of bacteriophage T7. J Biol Chem 1999;274:35899-907. [PMID: 10585475 DOI: 10.1074/jbc.274.50.35899] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
25
Kusakabe T, Hine AV, Hyberts SG, Richardson CC. The Cys4 zinc finger of bacteriophage T7 primase in sequence-specific single-stranded DNA recognition. Proc Natl Acad Sci U S A 1999;96:4295-300. [PMID: 10200256 PMCID: PMC16326 DOI: 10.1073/pnas.96.8.4295] [Citation(s) in RCA: 52] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
26
Takagi T, Taylor GS, Kusakabe T, Charbonneau H, Buratowski S. A protein tyrosine phosphatase-like protein from baculovirus has RNA 5'-triphosphatase and diphosphatase activities. Proc Natl Acad Sci U S A 1998;95:9808-12. [PMID: 9707557 PMCID: PMC21418 DOI: 10.1073/pnas.95.17.9808] [Citation(s) in RCA: 40] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]  Open
27
Frick DN, Baradaran K, Richardson CC. An N-terminal fragment of the gene 4 helicase/primase of bacteriophage T7 retains primase activity in the absence of helicase activity. Proc Natl Acad Sci U S A 1998;95:7957-62. [PMID: 9653122 PMCID: PMC20911 DOI: 10.1073/pnas.95.14.7957] [Citation(s) in RCA: 64] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]  Open
28
Kusakabe T, Baradaran K, Lee J, Richardson CC. Roles of the helicase and primase domain of the gene 4 protein of bacteriophage T7 in accessing the primase recognition site. EMBO J 1998;17:1542-52. [PMID: 9482751 PMCID: PMC1170502 DOI: 10.1093/emboj/17.5.1542] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]  Open
29
Kusakabe T, Richardson CC. Gene 4 DNA primase of bacteriophage T7 mediates the annealing and extension of ribo-oligonucleotides at primase recognition sites. J Biol Chem 1997;272:12446-53. [PMID: 9139692 DOI: 10.1074/jbc.272.19.12446] [Citation(s) in RCA: 39] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]  Open
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