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Mao N, Yang JJ, Zhang YX, Li T, Fan L. Species diversity of Tricholoma (Agaricales, Tricholomataceae) from Shanxi Province of northern China with the description of four new species. MycoKeys 2025; 112:59-80. [PMID: 39830362 PMCID: PMC11739812 DOI: 10.3897/mycokeys.112.132652] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2024] [Accepted: 12/07/2024] [Indexed: 01/22/2025] Open
Abstract
Species of Tricholoma are of great economic and ecological value. There are many studies on Tricholoma worldwide, but the areas investigated are generally North America and Europe. There is limited knowledge about Tricholoma in China. In this study, 21 species of Tricholoma were confirmed in Shanxi Province based on morphological and molecular phylogenetic analyses. These species are located in eight sections, viz. sect. Atrosquamosa, sect. Genuina, sect. Lasciva, sect. Matsutake, sect. Pardinicuti, sect. Rigida, sect. Terrea and sect. Tricholoma. Of these, four species are described as new to science: T.flavoviride, T.fumeobrunneum, T.parafulvum, and T.viscidum.
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Affiliation(s)
- Ning Mao
- College of Life Science, Capital Normal University, Xisanhuanbeilu 105, Haidian, Beijing 100048, ChinaCapital Normal UniversityBeijingChina
| | - Jia-Jia Yang
- College of Life Science, Capital Normal University, Xisanhuanbeilu 105, Haidian, Beijing 100048, ChinaCapital Normal UniversityBeijingChina
| | - Yu-Xin Zhang
- College of Life Science, Capital Normal University, Xisanhuanbeilu 105, Haidian, Beijing 100048, ChinaCapital Normal UniversityBeijingChina
| | - Ting Li
- Department of Life Sciences, Natural History Museum of China, Tianqiaonandajie126, Dongcheng, Beijing, 100050, ChinaNatural History Museum of ChinaBeijingChina
| | - Li Fan
- College of Life Science, Capital Normal University, Xisanhuanbeilu 105, Haidian, Beijing 100048, ChinaCapital Normal UniversityBeijingChina
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2
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Kim JH, Bae EK, Hue Y, Choi B, Kang MJ, Park EJ, Kim KT. Comparative Genomics Reveals Species-Specific Genes and Symbiotic Adaptations in Tricholoma matsutake. J Fungi (Basel) 2024; 10:746. [PMID: 39590665 PMCID: PMC11595502 DOI: 10.3390/jof10110746] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2024] [Revised: 10/03/2024] [Accepted: 10/26/2024] [Indexed: 11/28/2024] Open
Abstract
Tricholoma matsutake, a highly valued ectomycorrhizal fungus, requires a symbiotic relationship with pine trees for growth, complicating its cultivation. This study presents a comprehensive comparative genomic analysis of Tricholoma species, with a focus on T. matsutake. Genomic data from 19 assemblies representing 13 species were analyzed to identify genus-, species-, and strain-specific genes, revealing significant evolutionary adaptations. Notably, T. matsutake exhibits a higher proportion of repetitive elements compared to other species, with retrotransposons like LTR Gypsy dominating its genome. Phylogenomic analyses showed that T. matsutake forms a monophyletic group closely related to T. bakamatsutake. Gene family expansion and contraction analyses highlighted the unique evolutionary pressures on T. matsutake, particularly the loss of tryptophan-related metabolic pathways and the gain of genes related to iron ion homeostasis, which may be crucial for its adaptation to nutrient-limited environments. Additionally, the reduction in secreted proteins and carbohydrate-active enzymes reflects the host-dependent lifestyle of T. matsutake and related species. These findings enhance our understanding of the genetic and evolutionary mechanisms underlying the complex symbiotic relationships of T. matsutake, offering potential avenues for optimizing its cultivation and commercial value.
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Affiliation(s)
- Jea Hyeoung Kim
- Department of Plant Medicine, Sunchon National University, Suncheon 57922, Republic of Korea; (J.H.K.); (Y.H.)
| | - Eun-Kyung Bae
- Forest Microbiology and Application Division, Forest Bioresources Department, National Institute of Forest Science, Suwon 16631, Republic of Korea; (E.-K.B.); (M.-J.K.)
| | - Yoeguang Hue
- Department of Plant Medicine, Sunchon National University, Suncheon 57922, Republic of Korea; (J.H.K.); (Y.H.)
| | - Byungheon Choi
- Department of Multimedia Engineering, Sunchon National University, Suncheon 57922, Republic of Korea;
| | - Min-Jeong Kang
- Forest Microbiology and Application Division, Forest Bioresources Department, National Institute of Forest Science, Suwon 16631, Republic of Korea; (E.-K.B.); (M.-J.K.)
| | - Eung-Jun Park
- Forest Microbiology and Application Division, Forest Bioresources Department, National Institute of Forest Science, Suwon 16631, Republic of Korea; (E.-K.B.); (M.-J.K.)
| | - Ki-Tae Kim
- Department of Plant Medicine, Sunchon National University, Suncheon 57922, Republic of Korea; (J.H.K.); (Y.H.)
- Department of Agricultural Life Science, Sunchon National University, Suncheon 57922, Republic of Korea
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3
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Gilardoni G, Negri F, Vita Finzi P, Hussain FHS, Vidari G. New Tricholomalides D-G from the Mushroom Tricholoma ustaloides Grown in an Italian Beech Wood. Molecules 2023; 28:7446. [PMID: 37959864 PMCID: PMC10650213 DOI: 10.3390/molecules28217446] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2023] [Revised: 10/25/2023] [Accepted: 11/03/2023] [Indexed: 11/15/2023] Open
Abstract
Four novel seconeodolastane diterpenoids, named tricholomalides D-G, were isolated, together with the known tricholomalide C, from the fruiting bodies of Tricholoma ustaloides Romagn., a species belonging to the large Tricholoma genus of higher mushrooms (Basidiomycota, family Tricholomataceae). They were isolated through multiple chromatographic separations, and the structures, including the absolute configuration, were established through a detailed analysis of MS, NMR, and CD spectral data and comparison with related compounds reported in the literature, which has been thoroughly revised.
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Affiliation(s)
- Gianluca Gilardoni
- Departamento de Química, Universidad Técnica Particular de Loja (UTPL), Loja 110107, Ecuador;
| | - Francesca Negri
- Dipartimento di Chimica, Università degli Studi di Pavia, Via Taramelli 10, 27100 Pavia, Italy; (F.N.); (P.V.F.)
| | - Paola Vita Finzi
- Dipartimento di Chimica, Università degli Studi di Pavia, Via Taramelli 10, 27100 Pavia, Italy; (F.N.); (P.V.F.)
| | - Faiq H. S. Hussain
- Department of Medical Analysis, Faculty of Applied Science, Tishk International University, Erbil 44001, Iraq;
| | - Giovanni Vidari
- Dipartimento di Chimica, Università degli Studi di Pavia, Via Taramelli 10, 27100 Pavia, Italy; (F.N.); (P.V.F.)
- Department of Medical Analysis, Faculty of Applied Science, Tishk International University, Erbil 44001, Iraq;
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4
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Gilardoni G, Negri F, Vita Finzi P, Hussain FHS, Vidari G. New Tricholidic Acid Triterpenoids from the Mushroom Tricholoma ustaloides Collected in an Italian Beech Wood. Molecules 2023; 28:molecules28093864. [PMID: 37175274 PMCID: PMC10180436 DOI: 10.3390/molecules28093864] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2023] [Revised: 04/22/2023] [Accepted: 04/25/2023] [Indexed: 05/15/2023] Open
Abstract
The secondary metabolites produced by Tricholoma ustaloides Romagn., a mushroom species belonging to the large Tricholoma genus (Basidiomycota, Tricholomataceae), are unknown. Therefore, encouraged by the interesting results obtained in our previous chemical analyses of a few Tricholoma species collected in Italian woods, we aimed to investigate the secondary metabolites of Tricholoma ustaloides. The chemical analysis involved the isolation and characterization of secondary metabolites through an extensive chromatographic study. The structures of isolated metabolites, including the absolute configuration, were established based on a detailed analysis of MS, NMR spectroscopic, optical rotation, and circular dicroism data, and on comparison with those of related compounds reported in the literature. Two novel lanostane triterpenoids, named tricholidic acids B and C, together with triglycerides, a mixture of free fatty acids, five unidentified metabolites, and the known rare saponaceolides F and J, tricholidic acid, and tricholomenyn C, were isolated from an EtOAc extract of fruiting bodies of Tricholoma ustaloides that were collected in an Italian beech wood. This is the second example of isolation of tricholidic acid derivatives from a natural source. Saponaceolides F and J exhibited high cytotoxicity (IC50 values ≤ 10 μM) against a panel of five human cancer cell lines. The toxicity against myeloid leukemia (HL-60), lung cancer (A-549), hepatocellular cancer (HepG2), renal cancer (Caki-1), and breast cancer (MCF-7) cells was higher than that shown by the very well-known cytotoxic drug cisplatin.
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Affiliation(s)
- Gianluca Gilardoni
- Departamento de Química, Universidad Técnica Particular de Loja (UTPL), Loja 1101608, Ecuador
| | - Francesca Negri
- Dipartimento di Chimica, Università degli Studi di Pavia, Via Taramelli 10, 27100 Pavia, Italy
| | - Paola Vita Finzi
- Dipartimento di Chimica, Università degli Studi di Pavia, Via Taramelli 10, 27100 Pavia, Italy
| | - Faiq H S Hussain
- Department of Medical Analysis, Faculty of Applied Science, Tishk International University, Erbil 44001, Iraq
| | - Giovanni Vidari
- Dipartimento di Chimica, Università degli Studi di Pavia, Via Taramelli 10, 27100 Pavia, Italy
- Department of Medical Analysis, Faculty of Applied Science, Tishk International University, Erbil 44001, Iraq
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5
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Plazas E, Faraone N. Indole Alkaloids from Psychoactive Mushrooms: Chemical and Pharmacological Potential as Psychotherapeutic Agents. Biomedicines 2023; 11:461. [PMID: 36830997 PMCID: PMC9953455 DOI: 10.3390/biomedicines11020461] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2023] [Revised: 02/01/2023] [Accepted: 02/03/2023] [Indexed: 02/09/2023] Open
Abstract
Neuropsychiatric diseases such as depression, anxiety, and post-traumatic stress represent a substantial long-term challenge for the global health systems because of their rising prevalence, uncertain neuropathology, and lack of effective pharmacological treatments. The approved existing studies constitute a piece of strong evidence whereby psychiatric drugs have shown to have unpleasant side effects and reduction of sustained tolerability, impacting patients' quality of life. Thus, the implementation of innovative strategies and alternative sources of bioactive molecules for the search for neuropsychiatric agents are required to guarantee the success of more effective drug candidates. Psychotherapeutic use of indole alkaloids derived from magic mushrooms has shown great interest and potential as an alternative to the synthetic drugs currently used on the market. The focus on indole alkaloids is linked to their rich history, their use as pharmaceuticals, and their broad range of biological properties, collectively underscoring the indole heterocycle as significant in drug discovery. In this review, we aim to report the physicochemical and pharmacological characteristics of indole alkaloids, particularly those derived from magic mushrooms, highlighting the promising application of such active ingredients as safe and effective therapeutic agents for the treatment of neuropsychiatric disorders.
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Affiliation(s)
| | - Nicoletta Faraone
- Department of Chemistry, Acadia University, Wolfville, NS B4P 2R6, Canada
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Li H, Zhang Y, Zhang H, Zhou J, Liang J, Yin Y, He Q, Jiang S, Zhang Y, Yuan Y, Lang N, Cheng B, Wang M, Sun C, Sun C. Mushroom Poisoning Outbreaks - China, 2022. China CDC Wkly 2023; 5:45-50. [PMID: 36776462 PMCID: PMC9902756 DOI: 10.46234/ccdcw2023.009] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2023] [Accepted: 01/16/2023] [Indexed: 01/22/2023] Open
Abstract
What is already known about this topic? Mushroom poisoning is one of the most serious food safety issues in China. By the end of 2021, over 520 poisonous mushrooms had been discovered in China. The Southwest region of China was the most severely affected. Mushroom poisonings mainly concentrated in the summer and autumn months. What is added by this report? In 2022, China CDC conducted an investigation of 482 incidents of mushroom poisoning across 21 provincial-level administrative divisions (PLADs). This resulted in 1,332 patients and 28 deaths, with a total case fatality rate of 2.1%. A total of 98 mushrooms were identified, causing 7 different clinical types of diseases. Three provisional new species (Collybia humida nom. prov., Spodocybe venenata nom. prov., and Omphalotus yunnanensis nom. prov.) were newly recorded as poisonous mushrooms in China, in addition to 10 other species. What are the implications for public health practice? In view of the extensive impact and harm of poisonous mushrooms on public health, it is necessary to promote prevention and improve the ability of professionals to identify, diagnose, and treat mushroom poisoning.
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Affiliation(s)
- Haijiao Li
- National Institute of Occupational Health and Poison Control, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Yizhe Zhang
- National Institute of Occupational Health and Poison Control, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Hongshun Zhang
- National Institute of Occupational Health and Poison Control, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Jing Zhou
- National Institute of Occupational Health and Poison Control, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Jiaqi Liang
- National Institute of Occupational Health and Poison Control, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Yu Yin
- National Institute of Occupational Health and Poison Control, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Qian He
- National Institute of Occupational Health and Poison Control, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Shaofeng Jiang
- National Institute of Occupational Health and Poison Control, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Yutao Zhang
- National Institute of Occupational Health and Poison Control, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Yuan Yuan
- National Institute of Occupational Health and Poison Control, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Nan Lang
- National Institute of Occupational Health and Poison Control, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Bowen Cheng
- National Institute of Occupational Health and Poison Control, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Mei Wang
- National Institute of Occupational Health and Poison Control, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Chengye Sun
- National Institute of Occupational Health and Poison Control, Chinese Center for Disease Control and Prevention, Beijing, China,Chengye Sun,
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7
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Noordeloos ME, Jansen GM, Jordal JB, Morozova O, Weholt Ø, Brandrud TE, Vila J, Karich A, Reschke K, Lorås J, Krisai-Greilhuber I, Dima B. Molecular and morphological diversity in the /Rhombisporum clade of the genus Entoloma with a note on E. cocles. Mycol Prog 2022. [DOI: 10.1007/s11557-022-01779-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
AbstractA combined morphological and molecular genetic study of the European species within the /Rhombisporum clade of the genus Entoloma reveals a high species diversity. This group comprises typical grassland species with pronounced and well-differentiated cheilocystidia, and a wide range of spore shapes varying from rhomboid to five-angled. To fix the concept of the classical species E. rhombisporum, a neotype is designated. Nine species are described as new to science based on the result of nrDNA ITS phylogeny with additional gap coding, and morphological characterization: E. caulocystidiatum, E. lunare, E. pararhombisporum, E. pentagonale, E. perrhombisporum, E. rhombiibericum, E. rhombisporoides, E. sororpratulense, and E. subcuboideum. The ITS sequences of the holotypes of previously described species belonging to the /Rhombisporum clade, viz., E. laurisilvae and E. pratulense have also been generated and are published here for the first time. Since many of the above-mentioned species have been misidentified as E. cocles, it seemed opportune to also study this species and to designate a neotype to fix its current concept. A key including European species is presented. As most of the species are potentially important indicators for threatened grassland communities, the 130 ITS barcodes newly generated for this study may be useful as a reference in conservation and metabarcoding projects.
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Cui YY, Ding XX, Kost G, Yang ZL. Tricholoma sect. Tricholoma (Tricholomataceae) from China: molecular phylogeny and taxonomy. Mycol Prog 2022. [DOI: 10.1007/s11557-022-01788-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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9
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Ding XX, Cui YY, Yang ZL. Two new species of Tricholoma sect. Genuina (Agaricales) from China based on molecular phylogenetic and morphological evidence. Mycol Prog 2022. [DOI: 10.1007/s11557-022-01797-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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10
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Aoki W, Archambault R, Bérubé J, Lamoureux Y, Fukuda M, Yamada A. Tricholoma alpinum, sp. nov., under five-needle pines in alpine and subalpine zones in Japan. Mycologia 2022; 114:190-202. [PMID: 35138981 DOI: 10.1080/00275514.2021.2018889] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Abstract
Alpine regions in Japan are characterized by the Siberian dwarf pine, Pinus pumila. Although these regions are conserved as national parks due to their unique biome, few reports of the fungal biota are available. We examined mushroom fungi under such vegetation and found a unique yellowish-capped Tricholoma species. Multilocus molecular phylogenetic analyses and morphological observation of specimens showed that the Tricholoma species is very similar to T. fumosoluteum known in North America. The Japanese yellowish-capped T. aff. fumosoluteum had larger basidiospores and basidia and shorter pileipellis hyphae compared with T. fumosoluteum. Therefore, we describe the Japanese entity as a new species, T. alpinum.
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Affiliation(s)
- Wataru Aoki
- Department of Agriculture, Graduate School of Science and Technology, Shinshu University, Minami-minowa, Nagano, 399-4598, Japan
| | | | - Jean Bérubé
- Natural Resources Canada, Laurentian Forestry Centre, Quebec, G1V 4C7, Canada
| | - Yves Lamoureux
- Jardin botanique de Montréal (CMMF), Montréal, Québec, H1X 2B2, Canada
| | - Masaki Fukuda
- Department of Agriculture, Graduate School of Science and Technology, Shinshu University, Minami-minowa, Nagano, 399-4598, Japan.,Faculty of Agriculture, Shinshu University, Minami-minowa, Nagano, 399-4598, Japan
| | - Akiyoshi Yamada
- Department of Agriculture, Graduate School of Science and Technology, Shinshu University, Minami-minowa, Nagano, 399-4598, Japan.,Faculty of Agriculture, Shinshu University, Minami-minowa, Nagano, 399-4598, Japan.,Institute for Mountain Science, Shinshu University, Minami-minowa, Nagano, 399-4598, Japan
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11
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12
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Aoki W, Endo N, Ushijima S, Nagai H, Ito T, Fukuda M, Yamada A. Taxonomic revision of the Japanese Tricholoma ustale and closely related species based on molecular phylogenetic and morphological data. MYCOSCIENCE 2021; 62:307-321. [PMID: 37089467 PMCID: PMC9721522 DOI: 10.47371/mycosci.2021.06.002] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2021] [Revised: 01/15/2021] [Accepted: 06/07/2021] [Indexed: 11/16/2022]
Abstract
"Kakishimeji" identified as Tricholoma ustale and belonging to Tricholoma sect. Genuina is a common poisonous mushroom in Japan. Kakishimeji contains the toxic compound ustalic acid and causes digestive trouble. However, this fungus is consumed in some regions of Japan without any digestive issues. We clarified the probable species complex of Kakishimeji based on a phylogenetic analysis. We collected 89 basidioma specimens of Kakishimeji and related species from various forest sites in Japan and conducted phylogenetic analyses using 7 nuclear and mitochondrial gene sequences. Kakishimeji was found to consist of four distinct phylogenetic clades based on all DNA regions tested. Of these, two clades included European T. stans and T. albobrunneum type specimens. Another two clades consisted of sister clades to T. pessundatum and T. ustaloides. In addition, all four phylogenetic clades of Kakishimeji had different spore and basidium sizes. Therefore, we regarded the latter two clades as two new Tricholoma species: T. kakishimeji and T. kakishimejioides.
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Affiliation(s)
- Wataru Aoki
- Department of Agriculture, Graduate School of Science and Technology, Shinshu University
| | - Naoki Endo
- Fungus/Mushroom Resource and Research Center, Faculty of Agriculture, Tottori University
| | | | | | - Tetsuro Ito
- Faculty of Pharmacy, Gifu University of Medical Science
| | - Masaki Fukuda
- Department of Agriculture, Graduate School of Science and Technology, Shinshu University
| | - Akiyoshi Yamada
- Department of Agriculture, Graduate School of Science and Technology, Shinshu University
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Ushijima S, Nagasawa E, Endo N, Yamada A. Tricholoma olivaceonigrum, a new species of the section Tricholoma ( Agaricales) from Japan. MYCOSCIENCE 2021; 62:233-238. [PMID: 37092167 PMCID: PMC9721503 DOI: 10.47371/mycosci.2021.03.005] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2020] [Revised: 03/15/2021] [Accepted: 03/16/2021] [Indexed: 01/08/2023]
Abstract
A novel species of Tricholoma section Tricholoma, namely, T. olivaceonigrum, is described and illustrated based on samples found in an oak woods dominated by Quercus myrsinifolia, an evergreen oak, in Tottori Prefecture, western Japan. It is characterized by a conic-umbonate, dark-greenish olivaceous pileus with blackish innate fibrils; a whitish silky-fibrillose stipe, often faintly tinted pale yellow and with a narrowed subpointed base; subglobose to broadly elliptic spores; and fruiting in early winter. Phylogenetic analysis targeting the internal transcribed spacer region of the ribosomal RNA gene revealed that T. olivaceonigrum forms a well-supported clade sister to T. portentosum. Other morphologically and phylogenetically closely related species of the section Tricholoma are discussed.
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Affiliation(s)
| | | | - Naoki Endo
- Fungus/Mushroom Resource and Research Center
| | - Akiyoshi Yamada
- Department of Bioscience and Biotechnology Faculty of Agriculture
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14
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Huang W, Feng H, Tu W, Xiong C, Jin X, Li P, Wang X, Li Q. Comparative Mitogenomic Analysis Reveals Dynamics of Intron Within and Between Tricholoma Species and Phylogeny of Basidiomycota. Front Genet 2021; 12:534871. [PMID: 33659021 PMCID: PMC7917209 DOI: 10.3389/fgene.2021.534871] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2020] [Accepted: 01/18/2021] [Indexed: 01/28/2023] Open
Abstract
The genus of Tricholoma is a group of important ectomycorrhizal fungi. The overlapping of morphological characteristics often leads to the confusion of Tricholoma species classification. In this study, the mitogenomes of five Tricholoma species were sequenced based on the next-generation sequencing technology, including T. matsutake SCYJ1, T. bakamatsutake, T. terreum, T. flavovirens, and T. saponaceum. These five mitogenomes were all composed of circular DNA molecules, with sizes ranging from 49,480 to 103,090 bp. Intergenic sequences were considered to be the main factor contributing to size variations of Tricholoma mitogenomes. Comparative mitogenomic analysis showed that the introns of the Agaricales mitogenome experienced frequent loss/gain events. In addition, potential gene transfer was detected between the mitochondrial and nuclear genomes of the five species of Tricholoma. Evolutionary analysis showed that the rps3 gene of the Tricholoma species was under positive selection or relaxed selection in the evolutionary process. In addition, large-scale gene rearrangements were detected between some Tricholoma species. Phylogenetic analysis using the Bayesian inference and maximum likelihood methods based on a combined mitochondrial gene set yielded identical and well-supported tree topologies. This study promoted the understanding of the genetics, evolution, and phylogeny of the Tricholoma genus and related species.
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Affiliation(s)
- Wenli Huang
- Biotechnology and Nuclear Technology Research Institute, Sichuan Academy of Agricultural Sciences, Chengdu, China
| | - Huiyu Feng
- Key Laboratory of Coarse Cereal Processing, Ministry of Agriculture and Rural Affairs, School of Food and Biological Engineering, Chengdu University, Chengdu, China
| | - Wenying Tu
- Key Laboratory of Coarse Cereal Processing, Ministry of Agriculture and Rural Affairs, School of Food and Biological Engineering, Chengdu University, Chengdu, China
| | - Chuan Xiong
- Biotechnology and Nuclear Technology Research Institute, Sichuan Academy of Agricultural Sciences, Chengdu, China
| | - Xin Jin
- Biotechnology and Nuclear Technology Research Institute, Sichuan Academy of Agricultural Sciences, Chengdu, China
| | - Ping Li
- Biotechnology and Nuclear Technology Research Institute, Sichuan Academy of Agricultural Sciences, Chengdu, China
| | - Xu Wang
- College of Life Sciences, Henan Agricultural University, Zhengzhou, China
| | - Qiang Li
- Key Laboratory of Coarse Cereal Processing, Ministry of Agriculture and Rural Affairs, School of Food and Biological Engineering, Chengdu University, Chengdu, China
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15
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Vizzini A, Consiglio G, Setti L. Testing spore amyloidity in Agaricales under light microscope: the case study of Tricholoma. IMA Fungus 2020; 11:24. [PMID: 33292837 PMCID: PMC7656700 DOI: 10.1186/s43008-020-00046-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2020] [Accepted: 10/15/2020] [Indexed: 11/10/2022] Open
Abstract
Although species of the genus Tricholoma are currently considered to produce inamyloid spores, a novel standardized method to test sporal amyloidity (which involves heating the sample in Melzer's reagent) showed evidence that in the tested species of this genus, which belong in all 10 sections currently recognized from Europe, the spores are amyloid. In two species, T. josserandii and T. terreum, the spores are also partly dextrinoid. This result provides strong indication that a positive reaction of the spores in Melzer's reagent could be a character shared by all genera in Tricholomataceae s. str.
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Affiliation(s)
- Alfredo Vizzini
- Department of Life Sciences and Systems Biology, University of Torino and Institute for Sustainable Plant Protection (IPSP-SS Turin), C.N.R, Viale P.A. Mattioli, 25, I-10125, Torino, Italy.
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Piepenbring M, Maciá-Vicente JG, Codjia JEI, Glatthorn C, Kirk P, Meswaet Y, Minter D, Olou BA, Reschke K, Schmidt M, Yorou NS. Mapping mycological ignorance - checklists and diversity patterns of fungi known for West Africa. IMA Fungus 2020; 11:13. [PMID: 32699745 PMCID: PMC7341642 DOI: 10.1186/s43008-020-00034-y] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
Scientific information about biodiversity distribution is indispensable for nature conservation and sustainable management of natural resources. For several groups of animals and plants, such data are available, but for fungi, especially in tropical regions like West Africa, they are mostly missing. Here, information for West African countries about species diversity of fungi and fungus-like organisms (other organisms traditionally studied by mycologists) is compiled from literature and analysed in its historical context for the first time. More than 16,000 records of fungi representing 4843 species and infraspecific taxa were found in 860 publications relating to West Africa. Records from the Global Biodiversity Information Facility (GBIF) database (2395 species), and that of the former International Mycological Institute fungal reference collection (IMI) (2526 species) were also considered. The compilation based on literature is more comprehensive than the GBIF and IMI data, although they include 914 and 679 species names, respectively, which are not present in the checklist based on literature. According to data available in literature, knowledge on fungal richness ranges from 19 species (Guinea Bissau) to 1595 (Sierra Leone). In estimating existing species diversity, richness estimators and the Hawksworth 6:1 fungus to plant species ratio were used. Based on the Hawksworth ratio, known fungal diversity in West Africa represents 11.4% of the expected diversity. For six West African countries, however, known fungal species diversity is less than 2%. Incomplete knowledge of fungal diversity is also evident by species accumulation curves not reaching saturation, by 45.3% of the fungal species in the checklist being cited only once for West Africa, and by 66.5% of the fungal species in the checklist reported only for a single country. The documentation of different systematic groups of fungi is very heterogeneous because historically investigations have been sporadic. Recent opportunistic sampling activities in Benin showed that it is not difficult to find specimens representing new country records. Investigation of fungi in West Africa started just over two centuries ago and it is still in an early pioneer phase. To promote proper exploration, the present checklist is provided as a tool to facilitate fungal identification in this region and to aid conceptualisation and justification of future research projects. Documentation of fungal diversity is urgently needed because natural habitats are being lost on a large scale through altered land use and climate change.
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Affiliation(s)
- Meike Piepenbring
- Department of Mycology, Goethe University Frankfurt am Main, Biologicum, Max-von-Laue-Str. 13, 60438 Frankfurt am Main, Germany
| | - Jose G. Maciá-Vicente
- Department of Mycology, Goethe University Frankfurt am Main, Biologicum, Max-von-Laue-Str. 13, 60438 Frankfurt am Main, Germany
| | - Jean Evans I. Codjia
- Research Unit Tropical Mycology and Plant-Soil Fungi Interactions, Faculty of Agronomy, University of Parakou, BP 123 Parakou, Benin
- Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201 China
| | - Carola Glatthorn
- Department of Mycology, Goethe University Frankfurt am Main, Biologicum, Max-von-Laue-Str. 13, 60438 Frankfurt am Main, Germany
| | - Paul Kirk
- Royal Botanic Garden, Kew, Richmond, Surrey UK
| | - Yalemwork Meswaet
- Department of Mycology, Goethe University Frankfurt am Main, Biologicum, Max-von-Laue-Str. 13, 60438 Frankfurt am Main, Germany
| | - David Minter
- CABI International, Bakeham Lane, Egham, Surrey TW20 9TY UK
| | - Boris Armel Olou
- Research Unit Tropical Mycology and Plant-Soil Fungi Interactions, Faculty of Agronomy, University of Parakou, BP 123 Parakou, Benin
- Department of Ecology, University of Kassel, Heinrich-Plett-Str. 40, Kassel, Germany
| | - Kai Reschke
- Department of Mycology, Goethe University Frankfurt am Main, Biologicum, Max-von-Laue-Str. 13, 60438 Frankfurt am Main, Germany
| | - Marco Schmidt
- Senckenberg Biodiversity and Climate Research Centre (SBiK-F), Senckenberganlage 25, 60325 Frankfurt am Main, Germany
- Palmengarten der Stadt Frankfurt am Main, Siesmayerstr. 61, 60323 Frankfurt am Main, Germany
| | - Nourou Soulemane Yorou
- Research Unit Tropical Mycology and Plant-Soil Fungi Interactions, Faculty of Agronomy, University of Parakou, BP 123 Parakou, Benin
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Endo N, Ushijima S, Nagasawa E, Sugawara R, Okuda Y, Sotome K, Nakagiri A, Maekawa N. Taxonomic reconsideration of Tricholoma foliicola (Agaricales, Basidiomycota) based on basidiomata morphology, living culture characteristics, and phylogenetic analyses. MYCOSCIENCE 2019. [DOI: 10.1016/j.myc.2019.07.002] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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