1
|
Mifsud DV, Herczku P, Ramachandran R, Sundararajan P, Rahul KK, Kovács STS, Sulik B, Juhász Z, Rácz R, Biri S, Kaňuchová Z, Ioppolo S, Sivaraman B, McCullough RW, Mason NJ. A systematic mid-infrared spectroscopic study of thermally processed H 2S ices. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024; 319:124567. [PMID: 38843614 DOI: 10.1016/j.saa.2024.124567] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2024] [Revised: 04/27/2024] [Accepted: 05/29/2024] [Indexed: 06/17/2024]
Abstract
The positive identification of the molecular components of interstellar icy grain mantles is critically reliant upon the availability of laboratory-generated mid-infrared absorption spectra which can be compared against data acquired by ground- and space-borne telescopes. However, one molecule which remains thus far undetected in interstellar ices is H2S, despite its important roles in astrochemical and geophysical processes. Such a lack of a detection is surprising, particularly in light of its relative abundance in cometary ices which are believed to be the most pristine remnants of pre-solar interstellar ices available for study. In this paper, we present the results of an extensive and quantitative mid-infrared spectroscopic characterisation of H2S ices deposited at 20, 40, and 70 K and thermally processed to sublimation in an ultrahigh-vacuum system. We anticipate our results to be useful in confirming the detection of interstellar H2S ice using high-resolution and high-sensitivity instruments such as the James Webb Space Telescope, as well as in the identification of solid H2S in icy environments in the outer Solar System, such as comets and moons.
Collapse
Affiliation(s)
- Duncan V Mifsud
- Centre for Astrophysics and Planetary Science, School of Physics and Astronomy, University of Kent, Canterbury CT2 7NH, United Kingdom; HUN-REN Institute for Nuclear Research (Atomki), Debrecen H-4026, Hungary
| | - Péter Herczku
- HUN-REN Institute for Nuclear Research (Atomki), Debrecen H-4026, Hungary
| | - Ragav Ramachandran
- Atomic, Molecular, and Optical Physics Division, Physical Research Laboratory, Ahmedabad 380009, India
| | - Pavithraa Sundararajan
- Atomic, Molecular, and Optical Physics Division, Physical Research Laboratory, Ahmedabad 380009, India
| | - K K Rahul
- HUN-REN Institute for Nuclear Research (Atomki), Debrecen H-4026, Hungary
| | - Sándor T S Kovács
- HUN-REN Institute for Nuclear Research (Atomki), Debrecen H-4026, Hungary
| | - Béla Sulik
- HUN-REN Institute for Nuclear Research (Atomki), Debrecen H-4026, Hungary
| | - Zoltán Juhász
- HUN-REN Institute for Nuclear Research (Atomki), Debrecen H-4026, Hungary
| | - Richárd Rácz
- HUN-REN Institute for Nuclear Research (Atomki), Debrecen H-4026, Hungary
| | - Sándor Biri
- HUN-REN Institute for Nuclear Research (Atomki), Debrecen H-4026, Hungary
| | - Zuzana Kaňuchová
- Astronomical Institute, Slovak Academy of Sciences, Tatranská Lomnica SK-059 60, Slovakia
| | - Sergio Ioppolo
- Centre for Interstellar Catalysis, Department of Physics and Astronomy, Aarhus University, Aarhus DK-8000, Denmark
| | - Bhalamurugan Sivaraman
- Atomic, Molecular, and Optical Physics Division, Physical Research Laboratory, Ahmedabad 380009, India
| | - Robert W McCullough
- Department of Physics and Astronomy, School of Mathematics and Physics, Queen's University Belfast, Belfast BT7 1NN, United Kingdom
| | - Nigel J Mason
- Centre for Astrophysics and Planetary Science, School of Physics and Astronomy, University of Kent, Canterbury CT2 7NH, United Kingdom; HUN-REN Institute for Nuclear Research (Atomki), Debrecen H-4026, Hungary.
| |
Collapse
|
2
|
Krischer F, Swamy VSVSN, Feichtner KS, Ward RJ, Gessner VH. The Cyanoketenyl Anion [NC 3O] . Angew Chem Int Ed Engl 2024; 63:e202403766. [PMID: 38470943 DOI: 10.1002/anie.202403766] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2024] [Revised: 03/05/2024] [Accepted: 03/08/2024] [Indexed: 03/14/2024]
Abstract
Cumulenes and heterocumulenes with three or more cumulative multiple bonds are usually reactive species that serve as valuable building blocks for more complex molecules but tend to isomerize or cyclize and therefore are difficult to isolate. Using a mild ligand exchange reaction at the carbon in α-metalated ylides, we have now succeeded in the synthesis and gram-scale isolation of the elusive cyanoketenyl anion [NC3O]-. Despite its assumed cumulene-like structure and the delocalization of the negative charge across the whole 5-atom molecule, it features a bent geometry with a nucleophilic central carbon atom. Computational studies reveal an ambiguous bonding situation in the anion, which can be illustrated only by a combination of different resonance structures. Nonetheless, the anion features remarkable stability, thus allowing the storage of its potassium-crown ether salt and its application as a highly functional synthetic building block. The cyanoketenyl anion readily reacts with a series of small molecules to form more complex organic compounds, including industrially valuable compounds such as cyanoacetate. This work demonstrated that reactive species can be generated by novel synthesis methods and open up atom-economic pathways to complex compounds from small abundant molecules.
Collapse
Affiliation(s)
- Felix Krischer
- Faculty of Chemistry and Biochemistry, Ruhr-University Bochum, Universitätsstraße 150, 44801, Bochum, Germany
| | - Varre S V S N Swamy
- Faculty of Chemistry and Biochemistry, Ruhr-University Bochum, Universitätsstraße 150, 44801, Bochum, Germany
| | - Kai-Stephan Feichtner
- Faculty of Chemistry and Biochemistry, Ruhr-University Bochum, Universitätsstraße 150, 44801, Bochum, Germany
| | - Robert J Ward
- Faculty of Chemistry and Biochemistry, Ruhr-University Bochum, Universitätsstraße 150, 44801, Bochum, Germany
| | - Viktoria H Gessner
- Faculty of Chemistry and Biochemistry, Ruhr-University Bochum, Universitätsstraße 150, 44801, Bochum, Germany
| |
Collapse
|
3
|
González D, Canosa A, Martínez-Núñez E, Fernández-Ramos A, Ballesteros B, Agúndez M, Cernicharo J, Jiménez E. Effect of temperature on the gas-phase reaction of CH 3CN with OH radicals: experimental ( T = 11.7-177.5 K) and computational ( T = 10-400 K) kinetic study. Phys Chem Chem Phys 2024; 26:3632-3646. [PMID: 38224163 DOI: 10.1039/d3cp04944b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2024]
Abstract
Acetonitrile (CH3CN) is present in the interstellar medium (ISM) in a variety of environments. However, at the ultracold temperatures of the ISM, radical-molecule reactions are not widely investigated because of the experimental handicap of getting organic molecules in the gas phase by conventional techniques. The CRESU (French acronym for Reaction Kinetics in a Uniform Supersonic Flow) technique solves this problem. For this reason, we present in this work the kinetic study of the gas-phase reaction of CH3CN with one of the most ubiquitous radicals, the hydroxyl (OH) radical, as a function of temperature (11.7-177.5 K). The kinetic technique employed to investigate the CH3CN + OH reaction was the pulsed laser photolysis-laser induced fluorescence. The rate coefficient for this reaction k(T) has been observed to drastically increase from 177.5 K to 107.0 K (about 2 orders of magnitude), while the increase in k(T) from 107.0 K to 11.7 K was milder (around 4 times). The temperature dependent expressions for k(T) are provided in the two distinct T-ranges, excluding the upper limit obtained for k(177.5 K): In addition, the rate coefficients estimated by the canonical competitive unified statistical (CCUS) theory show a similar behaviour to the experimental results, when evaluated within the high-pressure limit. This is consistent with the experimentally observed independence of k(T) with total gas density at selected temperatures. Astrochemical networks, such as the KIDA database or UMIST, do not include the CH3CN + OH reaction as a potential depletion process for acetonitrile in the ISM because the current studies predict very low rate coefficients at IS temperatures. According to the model (T = 10 K), the impact of the titled reaction on the abundances of CH3CN appears to be negligible in dark molecular clouds of the ISM (∼1% of the total depletion reactions included in UMIST network). With respect to the potential formation of the CH2CN radical in those environments, even in the most favourable scenario, where this radical could be formed in a 100% yield from the CH3CN + OH reaction, this route would only contribute around 2% to the current assumed formation routes by the UMIST network.
Collapse
Affiliation(s)
- Daniel González
- Departamento de Química Física, Facultad de Ciencias y Tecnologías Químicas, Universidad de Castilla-La Mancha (UCLM), Avda. Camilo José Cela 1B, 13071 Ciudad Real, Spain.
- Instituto de Investigación en Combustión y Contaminación Atmosférica, UCLM, Camino de Moledores s/n, 13071 Ciudad Real, Spain
| | - André Canosa
- Institut de Physique de Rennes-CNRS - UMR 6251, Université de Rennes, F-35000 Rennes, France
| | - Emilio Martínez-Núñez
- Departamento de Química Física, Facultade de Química, Campus Vida, Universidade de Santiago de Compostela, Avda. das Ciencias s/n, 15782, Santiago de Compostela, Spain.
| | - Antonio Fernández-Ramos
- Departamento de Química Física, Facultade de Química, Campus Vida, Universidade de Santiago de Compostela, Avda. das Ciencias s/n, 15782, Santiago de Compostela, Spain.
- Centro Singular de Investigación en Química Biológica y Materiales Moleculares (CIQUS), Campus Vida, Universidade de Santiago de Compostela, C/Jenaro de la Fuente s/n, 15782, Santiago de Compostela, Spain
| | - Bernabé Ballesteros
- Departamento de Química Física, Facultad de Ciencias y Tecnologías Químicas, Universidad de Castilla-La Mancha (UCLM), Avda. Camilo José Cela 1B, 13071 Ciudad Real, Spain.
- Instituto de Investigación en Combustión y Contaminación Atmosférica, UCLM, Camino de Moledores s/n, 13071 Ciudad Real, Spain
| | - Marcelino Agúndez
- Molecular Astrophysics Group, Instituto de Física Fundamental (IFF-CSIC), Consejo Superior de Investigaciones Científicas, C/Serrano 123, 28006, Madrid, Spain
| | - José Cernicharo
- Molecular Astrophysics Group, Instituto de Física Fundamental (IFF-CSIC), Consejo Superior de Investigaciones Científicas, C/Serrano 123, 28006, Madrid, Spain
| | - Elena Jiménez
- Departamento de Química Física, Facultad de Ciencias y Tecnologías Químicas, Universidad de Castilla-La Mancha (UCLM), Avda. Camilo José Cela 1B, 13071 Ciudad Real, Spain.
- Instituto de Investigación en Combustión y Contaminación Atmosférica, UCLM, Camino de Moledores s/n, 13071 Ciudad Real, Spain
| |
Collapse
|
4
|
Wu QT, Anderson H, Watkins AK, Arora D, Barnes K, Padovani M, Shingledecker CN, Arumainayagam CR, Battat JBR. Role of Low-Energy (<20 eV) Secondary Electrons in the Extraterrestrial Synthesis of Prebiotic Molecules. ACS EARTH & SPACE CHEMISTRY 2024; 8:79-88. [PMID: 38264085 PMCID: PMC10801738 DOI: 10.1021/acsearthspacechem.3c00259] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/06/2023] [Revised: 11/27/2023] [Accepted: 11/29/2023] [Indexed: 01/25/2024]
Abstract
We demonstrate for the first time that Galactic cosmic rays with energies as high as ∼1010 eV can trigger a cascade of low-energy (<20 eV) secondary electrons that could be a significant contributor to the interstellar synthesis of prebiotic molecules whose delivery by comets, meteorites, and interplanetary dust particles may have kick-started life on Earth. For the energetic processing of interstellar ice mantles inside dark, dense molecular clouds, we explore the relative importance of low-energy (<20 eV) secondary electrons-agents of radiation chemistry-and low-energy (<10 eV), nonionizing photons-instigators of photochemistry. Our calculations indicate fluxes of ∼102 electrons cm-2 s-1 for low-energy secondary electrons produced within interstellar ices due to attenuated Galactic cosmic-ray protons. Consequently, in certain star-forming regions where internal high-energy radiation sources produce ionization rates that are observed to be a thousand times greater than the typical interstellar Galactic ionization rate, the flux of low-energy secondary electrons should far exceed that of nonionizing photons. Because reaction cross sections can be several orders of magnitude larger for electrons than for photons, even in the absence of such enhancement, our calculations indicate that secondary low-energy (<20 eV) electrons are at least as significant as low-energy (<10 eV) nonionizing photons in the interstellar synthesis of prebiotic molecules. Most importantly, our results demonstrate the pressing need for explicitly incorporating low-energy electrons in current and future astrochemical simulations of cosmic ices. Such models are critically important for interpreting James Webb Space Telescope infrared measurements, which are currently being used to probe the origins of life by studying complex organic molecules found in ices near star-forming regions.
Collapse
Affiliation(s)
- Qin Tong Wu
- Department
of Chemistry, Wellesley College, Wellesley, Massachusetts 02481, United States
| | - Hannah Anderson
- Department
of Chemistry, Wellesley College, Wellesley, Massachusetts 02481, United States
| | - Aurland K. Watkins
- Department
of Chemistry, Wellesley College, Wellesley, Massachusetts 02481, United States
| | - Devyani Arora
- Department
of Chemistry, Wellesley College, Wellesley, Massachusetts 02481, United States
| | - Kennedy Barnes
- Department
of Chemistry, Wellesley College, Wellesley, Massachusetts 02481, United States
| | - Marco Padovani
- INAF—Osservatorio
Astrofisico di Arcetri, Largo E. Fermi, 5, 50125 Firenze, Italy
| | | | | | - James B. R. Battat
- Department
of Physics & Astronomy, Wellesley College, Wellesley, Massachusetts 02481, United States
| |
Collapse
|
5
|
Ruf A, Danger G. Network Analysis Reveals Spatial Clustering and Annotation of Complex Chemical Spaces: Application to Astrochemistry. Anal Chem 2022; 94:14135-14142. [PMID: 36209417 PMCID: PMC9583070 DOI: 10.1021/acs.analchem.2c01271] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
![]()
How are molecules
linked to each other in complex systems?
In a
proof-of-concept study, we have developed the method mol2net (https://zenodo.org/record/7025094) to generate and analyze the molecular network of complex astrochemical
data (from high-resolution Orbitrap MS1 analysis of H2O:CH3OH:NH3 interstellar ice analogs)
in a data-driven and unsupervised manner, without any prior knowledge
about chemical reactions. The molecular network is clustered according
to the initial NH3 content and unlocked HCN, NH3, and H2O as spatially resolved key transformations. In
comparison with the PubChem database, four subsets were annotated:
(i) saturated C-backbone molecules without N, (ii) saturated N-backbone
molecules, (iii) unsaturated C-backbone molecules without N, and (iv)
unsaturated N-backbone molecules. These findings were validated with
previous results (e.g., identifying the two major graph components
as previously described N-poor and N-rich molecular groups) but with
additional information about subclustering, key transformations, and
molecular structures, and thus, the structural characterization of
large complex organic molecules in interstellar ice analogs has been
significantly refined.
Collapse
Affiliation(s)
- Alexander Ruf
- Laboratoire de Physique des Interactions Ioniques et Moléculaires (PIIM), Université Aix-Marseille, CNRS, 13013 Marseille, France
- Department of Chemistry and Pharmacy, Ludwig-Maximilians-University, 81377 Munich, Germany
- Excellence Cluster ORIGINS, Boltzmannstraße 2, 85748 Garching, Germany
| | - Grégoire Danger
- Laboratoire de Physique des Interactions Ioniques et Moléculaires (PIIM), Université Aix-Marseille, CNRS, 13013 Marseille, France
- Aix-Marseille Université, CNRS, CNES, LAM, 13013 Marseille, France
- Institut Universitaire de France (IUF), 75231 Paris, France
| |
Collapse
|
6
|
González D, Lema-Saavedra A, Espinosa S, Martínez-Núñez E, Fernández-Ramos A, Canosa A, Ballesteros B, Jiménez E. Reaction of OH radicals with CH 3NH 2 in the gas phase: experimental (11.7-177.5 K) and computed rate coefficients (10-1000 K). Phys Chem Chem Phys 2022; 24:23593-23601. [PMID: 36134502 DOI: 10.1039/d2cp03414j] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Nitrogen-bearing molecules, like methylamine (CH3NH2), can be the building blocks of amino acids in the interstellar medium (ISM). At the ultralow temperatures of the ISM, it is important to know its gas-phase reactivity towards interstellar radicals and the products formed. In this work, the kinetics of the OH + CH3NH2 reaction was experimentally and theoretically investigated at low- and high-pressure limits (LPL and HPL) between 10 and 1000 K. Moreover, the CH2NH2 and CH3NH yields were computed in the same temperature range for both pressure regimes. A pulsed CRESU (French acronym for Reaction Kinetics in a Uniform Supersonic Flow) apparatus was employed to determine the rate coefficient, k(T), in the 11.7-177.5 K range. A drastic increase of k(T) when the temperature is lowered was observed in agreement with theoretical calculations, evaluated by the competitive canonical unified statistical (CCUS) theory, below 300 K in the LPL regime. The same trend was observed in the HPL regime below 350 K, but the theoretical k(T) values were higher than the experimental ones. Above 200 K, the calculated rate coefficients are improved with respect to previous computational studies and are in excellent agreement with the experimental literature data. In the LPL, the formation of CH3NH becomes largely dominant below ca. 100 K. Conversely, in the HPL regime, CH2NH2 is the only product below 100 K, whereas CH3NH becomes dominant at 298 K with a branching ratio similar to the one found in the LPL regime (≈70%). At T > 300 K, both reaction channels are competitive independently of the pressure regime.
Collapse
Affiliation(s)
- Daniel González
- Departamento de Química Física, Facultad de Ciencias y Tecnologías Químicas, Universidad de Castilla-La Mancha, Avda. Camilo José Cela 1b, 13071, Ciudad Real, Spain.
| | - Anxo Lema-Saavedra
- Centro Singular de Investigación en Química Biológica y Materiales Moleculares (CIQUS), Campus Vida, Universidade de Santiago de Compostela, C/Jenaro de la Fuente s/n, 15782, Santiago de Compostela, Spain.
| | - Sara Espinosa
- Departamento de Química Física, Facultad de Ciencias y Tecnologías Químicas, Universidad de Castilla-La Mancha, Avda. Camilo José Cela 1b, 13071, Ciudad Real, Spain.
| | - Emilio Martínez-Núñez
- Departamento de Química Física, Facultade de Química, Campus Vida, Universidade de Santiago de Compostela, Avda. das Ciencias s/n, 15782, Santiago de Compostela, Spain
| | - Antonio Fernández-Ramos
- Centro Singular de Investigación en Química Biológica y Materiales Moleculares (CIQUS), Campus Vida, Universidade de Santiago de Compostela, C/Jenaro de la Fuente s/n, 15782, Santiago de Compostela, Spain. .,Departamento de Química Física, Facultade de Química, Campus Vida, Universidade de Santiago de Compostela, Avda. das Ciencias s/n, 15782, Santiago de Compostela, Spain
| | - André Canosa
- CNRS, IPR (Institut de Physique de Rennes)-UMR 6251, Université de Rennes, F-35000 Rennes, France
| | - Bernabé Ballesteros
- Departamento de Química Física, Facultad de Ciencias y Tecnologías Químicas, Universidad de Castilla-La Mancha, Avda. Camilo José Cela 1b, 13071, Ciudad Real, Spain. .,Instituto de Investigación en Combustión y Contaminación Atmosférica (ICCA), Universidad de Castilla-La Mancha, Camino de Moledores s/n, 13071, Ciudad Real, Spain
| | - Elena Jiménez
- Departamento de Química Física, Facultad de Ciencias y Tecnologías Químicas, Universidad de Castilla-La Mancha, Avda. Camilo José Cela 1b, 13071, Ciudad Real, Spain. .,Instituto de Investigación en Combustión y Contaminación Atmosférica (ICCA), Universidad de Castilla-La Mancha, Camino de Moledores s/n, 13071, Ciudad Real, Spain
| |
Collapse
|
7
|
Tsai SY, Haupa KA, Lee YP. Hydrogen-Atom-Assisted Uphill Isomerization of N-Methylformamide in Darkness. J Am Chem Soc 2022; 144:12339-12346. [PMID: 35771208 DOI: 10.1021/jacs.2c03714] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
N-Methylformamide, HC(O)NH(CH3), is the smallest amide detected in the interstellar medium that can exist as cis and trans isomers. We performed reactions of H atoms with trans-NMF in solid para-hydrogen at 3.3 K and found that the cis-NMF isomer, which has higher energy, increased continuously in darkness, demonstrating a previously overlooked and seemingly unlikely isomerization of prebiotic molecules through H-atom tunneling reactions in the absence of light. Infrared spectra of radical intermediates trans-•C(O)NH(CH3) and trans-HC(O)NH(•CH2) were identified. Further H addition and H abstraction enhanced the formation of CH3NCO, HNCO, and CH2NH in the H-rich experiments. These results indicate that, unlike the dual cycle of H-abstraction and H-addition channels chemically linking formamide and HNCO, the H addition to CH3NCO produced only cis-radicals that led to cis-NMF. Furthermore, H-atom-induced fragmentation by breaking the C-C bond provides links between NMF and HCNO/CH2NH. These endothermic isomerization/decomposition reactions become possible through the coupling with H + H → H2.
Collapse
Affiliation(s)
- Shih-Yi Tsai
- Department of Applied Chemistry and Institute of Molecular Science, National Yang Ming Chiao Tung University, Hsinchu 300093, Taiwan
| | - Karolina Anna Haupa
- Department of Applied Chemistry and Institute of Molecular Science, National Yang Ming Chiao Tung University, Hsinchu 300093, Taiwan.,Institute of Physical Chemistry, Karlsruhe Institute of Technology, Fritz-Haber Weg 2, Karlsruhe 76131, Germany
| | - Yuan-Pern Lee
- Department of Applied Chemistry and Institute of Molecular Science, National Yang Ming Chiao Tung University, Hsinchu 300093, Taiwan.,Center for Emergent Functional Matter Science, National Yang Ming Chiao Tung University, Hsinchu 300093, Taiwan
| |
Collapse
|
8
|
Tracing the Primordial Chemical Life of Glycine: A Review from Quantum Chemical Simulations. Int J Mol Sci 2022; 23:ijms23084252. [PMID: 35457069 PMCID: PMC9030215 DOI: 10.3390/ijms23084252] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2022] [Revised: 04/08/2022] [Accepted: 04/09/2022] [Indexed: 12/28/2022] Open
Abstract
Glycine (Gly), NH2CH2COOH, is the simplest amino acid. Although it has not been directly detected in the interstellar gas-phase medium, it has been identified in comets and meteorites, and its synthesis in these environments has been simulated in terrestrial laboratory experiments. Likewise, condensation of Gly to form peptides in scenarios resembling those present in a primordial Earth has been demonstrated experimentally. Thus, Gly is a paradigmatic system for biomolecular building blocks to investigate how they can be synthesized in astrophysical environments, transported and delivered by fragments of asteroids (meteorites, once they land on Earth) and comets (interplanetary dust particles that land on Earth) to the primitive Earth, and there react to form biopolymers as a step towards the emergence of life. Quantum chemical investigations addressing these Gly-related events have been performed, providing fundamental atomic-scale information and quantitative energetic data. However, they are spread in the literature and difficult to harmonize in a consistent way due to different computational chemistry methodologies and model systems. This review aims to collect the work done so far to characterize, at a quantum mechanical level, the chemical life of Gly, i.e., from its synthesis in the interstellar medium up to its polymerization on Earth.
Collapse
|
9
|
Potapov A, Fulvio D, Krasnokutski S, Jäger C, Henning T. Formation of Complex Organic and Prebiotic Molecules in H 2O:NH 3:CO 2 Ices at Temperatures Relevant to Hot Cores, Protostellar Envelopes, and Planet-Forming Disks. J Phys Chem A 2022; 126:1627-1639. [PMID: 35245052 DOI: 10.1021/acs.jpca.1c10188] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Photochemistry in H2O:NH3:CO2 cosmic ice analogues was studied at temperatures of 75, 120, and 150 K, relevant to hot cores and warmer regions in protostellar envelopes and planet-forming disks. A combination of two triggers of surface chemistry in cosmic ice analogues, heat and UV irradiation, compared to using either just heat or UV irradiation, leads to a larger variety and an increased production of complex organic molecules, including potential precursors of prebiotic molecules. In addition to complex organic molecules detected in previous studies of H2O:NH3:CO2 ices, ammonium carbamate, carbamic acid, ammonium formate and formamide, we detected acetaldehyde, urea, and, tentatively, glycine, the simplest amino acid. Water ice hampers reactions at low temperature (75 K) but allows the parent molecules, CO2 and NH3, to stay in the solid state and react at higher temperatures (120 and 150 K, above their desorption temperatures). The experiments were performed on the surface of KBr substrates and amorphous silicate grains, analogs of cosmic silicate dust. The production of complex molecules on the silicate surface is decreased compared to KBr. This result suggests that the larger surface area and/or surface properties of the silicate grains play a role in controlling the chemistry, preventing it taking place to the same extent as on the flat KBr substrate. This is further evidence of the fact that cosmic dust grains play an important role in the chemistry taking place on their surface.
Collapse
Affiliation(s)
- Alexey Potapov
- Laboratory Astrophysics Group of the Max Planck Institute for Astronomy at the Friedrich Schiller University Jena, Institute of Solid State Physics, Helmholtzweg 3, 07743 Jena, Germany
| | - Daniele Fulvio
- Osservatorio Astronomico di Capodimonte, Istituto Nazionale di Astrofisica, Salita Moiariello 16, 80131, Naples, Italy.,Max Planck Institute for Astronomy, Königstuhl 17, D-69117 Heidelberg, Germany
| | - Serge Krasnokutski
- Laboratory Astrophysics Group of the Max Planck Institute for Astronomy at the Friedrich Schiller University Jena, Institute of Solid State Physics, Helmholtzweg 3, 07743 Jena, Germany
| | - Cornelia Jäger
- Laboratory Astrophysics Group of the Max Planck Institute for Astronomy at the Friedrich Schiller University Jena, Institute of Solid State Physics, Helmholtzweg 3, 07743 Jena, Germany
| | - Thomas Henning
- Max Planck Institute for Astronomy, Königstuhl 17, D-69117 Heidelberg, Germany
| |
Collapse
|
10
|
ten Brinck S, Nieuwland C, van der Werf A, Veenboer RMP, Linnartz H, Bickelhaupt FM, Fonseca Guerra C. Polycyclic Aromatic Hydrocarbons (PAHs) in Interstellar Ices: A Computational Study into How the Ice Matrix Influences the Ionic State of PAH Photoproducts. ACS EARTH & SPACE CHEMISTRY 2022; 6:766-774. [PMID: 35330632 PMCID: PMC8935472 DOI: 10.1021/acsearthspacechem.1c00433] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2021] [Revised: 01/24/2022] [Accepted: 02/08/2022] [Indexed: 06/07/2023]
Abstract
It has been experimentally observed that water-ice-embedded polycyclic aromatic hydrocarbons (PAHs) form radical cations when exposed to vacuum UV irradiation, whereas ammonia-embedded PAHs lead to the formation of radical anions. In this study, we explain this phenomenon by investigating the fundamental electronic differences between water and ammonia, the implications of these differences on the PAH-water and PAH-ammonia interaction, and the possible ionization pathways in these complexes using density functional theory (DFT) computations. In the framework of the Kohn-Sham molecular orbital (MO) theory, we show that the ionic state of the PAH photoproducts results from the degree of occupied-occupied MO mixing between the PAHs and the matrix molecules. When interacting with the PAH, the lone pair-type highest occupied molecular orbital (HOMO) of water has poor orbital overlap and is too low in energy to mix with the filled π-orbitals of the PAH. As the lone-pair HOMO of ammonia is significantly higher in energy and has better overlap with filled π-orbitals of the PAH, the subsequent Pauli repulsion leads to mixed MOs with both PAH and ammonia character. By time-dependent DFT calculations, we demonstrate that the formation of mixed PAH-ammonia MOs opens alternative charge-transfer excitation pathways as now electronic density from ammonia can be transferred to unoccupied PAH levels, yielding anionic PAHs. As this pathway is much less available for water-embedded PAHs, charge transfer mainly occurs from localized PAH MOs to mixed PAH-water virtual levels, leading to cationic PAHs.
Collapse
Affiliation(s)
- Stephanie ten Brinck
- Department
of Theoretical Chemistry, Amsterdam Institute of Molecular and Life
Sciences (AIMMS), Amsterdam Center for Multiscale Modeling (ACMM), Vrije Universiteit Amsterdam, De Boelelaan 1083, 1081 HV Amsterdam, The Netherlands
| | - Celine Nieuwland
- Department
of Theoretical Chemistry, Amsterdam Institute of Molecular and Life
Sciences (AIMMS), Amsterdam Center for Multiscale Modeling (ACMM), Vrije Universiteit Amsterdam, De Boelelaan 1083, 1081 HV Amsterdam, The Netherlands
| | - Angela van der Werf
- Department
of Theoretical Chemistry, Amsterdam Institute of Molecular and Life
Sciences (AIMMS), Amsterdam Center for Multiscale Modeling (ACMM), Vrije Universiteit Amsterdam, De Boelelaan 1083, 1081 HV Amsterdam, The Netherlands
| | - Richard M. P. Veenboer
- Department
of Theoretical Chemistry, Amsterdam Institute of Molecular and Life
Sciences (AIMMS), Amsterdam Center for Multiscale Modeling (ACMM), Vrije Universiteit Amsterdam, De Boelelaan 1083, 1081 HV Amsterdam, The Netherlands
| | - Harold Linnartz
- Laboratory
for Astrophysics, Leiden Observatory, Leiden
University, P.O. Box 9513, 2300 RA Leiden, The Netherlands
| | - F. Matthias Bickelhaupt
- Department
of Theoretical Chemistry, Amsterdam Institute of Molecular and Life
Sciences (AIMMS), Amsterdam Center for Multiscale Modeling (ACMM), Vrije Universiteit Amsterdam, De Boelelaan 1083, 1081 HV Amsterdam, The Netherlands
- Institute
for Molecules and Materials (IMM), Radboud
University, Heyendaalseweg
135, 6525 AJ Nijmegen, The Netherlands
| | - Célia Fonseca Guerra
- Department
of Theoretical Chemistry, Amsterdam Institute of Molecular and Life
Sciences (AIMMS), Amsterdam Center for Multiscale Modeling (ACMM), Vrije Universiteit Amsterdam, De Boelelaan 1083, 1081 HV Amsterdam, The Netherlands
- Leiden
Institute of Chemistry, Gorlaeus Laboratories, Leiden University, Einsteinweg
55, 2333 CC Leiden, The Netherlands
| |
Collapse
|
11
|
Feldman VI, Ryazantsev SV, Kameneva SV. Matrix isolation in laboratory astrochemistry: state-of-the-art, implications and perspective. RUSSIAN CHEMICAL REVIEWS 2021. [DOI: 10.1070/rcr4995] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
|
12
|
Fulvio D, Potapov A, He J, Henning T. Astrochemical Pathways to Complex Organic and Prebiotic Molecules: Experimental Perspectives for In Situ Solid-State Studies. Life (Basel) 2021; 11:life11060568. [PMID: 34204233 PMCID: PMC8235774 DOI: 10.3390/life11060568] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2021] [Revised: 06/11/2021] [Accepted: 06/14/2021] [Indexed: 02/05/2023] Open
Abstract
A deep understanding of the origin of life requires the physical, chemical, and biological study of prebiotic systems and the comprehension of the mechanisms underlying their evolutionary steps. In this context, great attention is paid to the class of interstellar molecules known as "Complex Organic Molecules" (COMs), considered as possible precursors of prebiotic species. Although COMs have already been detected in different astrophysical environments (such as interstellar clouds, protostars, and protoplanetary disks) and in comets, the physical-chemical mechanisms underlying their formation are not yet fully understood. In this framework, a unique contribution comes from laboratory experiments specifically designed to mimic the conditions found in space. We present a review of experimental studies on the formation and evolution of COMs in the solid state, i.e., within ices of astrophysical interest, devoting special attention to the in situ detection and analysis techniques commonly used in laboratory astrochemistry. We discuss their main strengths and weaknesses and provide a perspective view on novel techniques, which may help in overcoming the current experimental challenges.
Collapse
Affiliation(s)
- Daniele Fulvio
- Istituto Nazionale di Astrofisica, Osservatorio Astronomico di Capodimonte, Salita Moiariello 16, 80131 Naples, Italy
- Max Planck Institute for Astronomy, Königstuhl 17, D-69117 Heidelberg, Germany; (J.H.); (T.H.)
- Correspondence:
| | - Alexey Potapov
- Laboratory Astrophysics Group of the Max Planck Institute for Astronomy at the Friedrich Schiller University Jena, Institute of Solid State Physics, Helmholtzweg 3, 07743 Jena, Germany;
| | - Jiao He
- Max Planck Institute for Astronomy, Königstuhl 17, D-69117 Heidelberg, Germany; (J.H.); (T.H.)
| | - Thomas Henning
- Max Planck Institute for Astronomy, Königstuhl 17, D-69117 Heidelberg, Germany; (J.H.); (T.H.)
| |
Collapse
|
13
|
Potapov A, McCoustra M. Physics and chemistry on the surface of cosmic dust grains: a laboratory view. INT REV PHYS CHEM 2021. [DOI: 10.1080/0144235x.2021.1918498] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Alexey Potapov
- Laboratory Astrophysics Group of the Max Planck Institute for Astronomy at the Friedrich Schiller University Jena, Jena, Germany
| | - Martin McCoustra
- Institute of Chemical Sciences, Heriot-Watt University, Edinburgh, UK
| |
Collapse
|
14
|
Lukianova MA, Volosatova AD, Drabkin VD, Sosulin IS, Kameneva SV, Feldman VI. Radiation-induced transformations of HCN⋯C2H2, HCN⋯C2H4 and HCN⋯C2H6 complexes in noble gas matrices: Synthesis of C3HxN molecules in cryogenic media. Radiat Phys Chem Oxf Engl 1993 2021. [DOI: 10.1016/j.radphyschem.2020.109232] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
|
15
|
Computational Surface Modelling of Ices and Minerals of Interstellar Interest—Insights and Perspectives. MINERALS 2020. [DOI: 10.3390/min11010026] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
The universe is molecularly rich, comprising from the simplest molecule (H2) to complex organic molecules (e.g., CH3CHO and NH2CHO), some of which of biological relevance (e.g., amino acids). This chemical richness is intimately linked to the different physical phases forming Solar-like planetary systems, in which at each phase, molecules of increasing complexity form. Interestingly, synthesis of some of these compounds only takes place in the presence of interstellar (IS) grains, i.e., solid-state sub-micron sized particles consisting of naked dust of silicates or carbonaceous materials that can be covered by water-dominated ice mantles. Surfaces of IS grains exhibit particular characteristics that allow the occurrence of pivotal chemical reactions, such as the presence of binding/catalytic sites and the capability to dissipate energy excesses through the grain phonons. The present know-how on the physicochemical features of IS grains has been obtained by the fruitful synergy of astronomical observational with astrochemical modelling and laboratory experiments. However, current limitations of these disciplines prevent us from having a full understanding of the IS grain surface chemistry as they cannot provide fundamental atomic-scale of grain surface elementary steps (i.e., adsorption, diffusion, reaction and desorption). This essential information can be obtained by means of simulations based on computational chemistry methods. One capability of these simulations deals with the construction of atom-based structural models mimicking the surfaces of IS grains, the very first step to investigate on the grain surface chemistry. This perspective aims to present the current state-of-the-art methods, techniques and strategies available in computational chemistry to model (i.e., construct and simulate) surfaces present in IS grains. Although we focus on water ice mantles and olivinic silicates as IS test case materials to exemplify the modelling procedures, a final discussion on the applicability of these approaches to simulate surfaces of other cosmic grain materials (e.g., cometary and meteoritic) is given.
Collapse
|
16
|
Santoro G, Sobrado JM, Tajuelo-Castilla G, Accolla M, Martínez L, Azpeitia J, Lauwaet K, Cernicharo J, Ellis GJ, Martín-Gago JÁ. INFRA-ICE: An ultra-high vacuum experimental station for laboratory astrochemistry. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2020; 91:124101. [PMID: 33379937 PMCID: PMC7116743 DOI: 10.1063/5.0027920] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2020] [Accepted: 11/16/2020] [Indexed: 06/12/2023]
Abstract
Laboratory astrochemistry aims at simulating, in the laboratory, some of the chemical and physical processes that operate in different regions of the universe. Amongst the diverse astrochemical problems that can be addressed in the laboratory, the evolution of cosmic dust grains in different regions of the interstellar medium (ISM) and its role in the formation of new chemical species through catalytic processes present significant interest. In particular, the dark clouds of the ISM dust grains are coated by icy mantles and it is thought that the ice-dust interaction plays a crucial role in the development of the chemical complexity observed in space. Here, we present a new ultra-high vacuum experimental station devoted to simulating the complex conditions of the coldest regions of the ISM. The INFRA-ICE machine can be operated as a standing alone setup or incorporated in a larger experimental station called Stardust, which is dedicated to simulate the formation of cosmic dust in evolved stars. As such, INFRA-ICE expands the capabilities of Stardust allowing the simulation of the complete journey of cosmic dust in space, from its formation in asymptotic giant branch stars to its processing and interaction with icy mantles in molecular clouds. To demonstrate some of the capabilities of INFRA-ICE, we present selected results on the ultraviolet photochemistry of undecane (C11H24) at 14 K. Aliphatics are part of the carbonaceous cosmic dust, and recently, aliphatics and short n-alkanes have been detected in situ in the comet 67P/Churyumov-Gerasimenko.
Collapse
Affiliation(s)
- Gonzalo Santoro
- Instituto de Ciencia de Materiales de Madrid (ICMM, CSIC). Materials Science Factory. Structure of Nanoscopic Systems Group. c/ Sor Juana Ines de la Cruz 3, E-28049 Cantoblanco, Madrid, Spain
| | - Jesús. M. Sobrado
- Centro de Astrobiología (CAB, INTA-CSIC). Crta. de Torrejón a Ajalvir km4, E-28850, Torrejón de Ardoz, Madrid, Spain
| | - Guillermo Tajuelo-Castilla
- Instituto de Ciencia de Materiales de Madrid (ICMM, CSIC). Materials Science Factory. Structure of Nanoscopic Systems Group. c/ Sor Juana Ines de la Cruz 3, E-28049 Cantoblanco, Madrid, Spain
| | - Mario Accolla
- Instituto de Ciencia de Materiales de Madrid (ICMM, CSIC). Materials Science Factory. Structure of Nanoscopic Systems Group. c/ Sor Juana Ines de la Cruz 3, E-28049 Cantoblanco, Madrid, Spain
| | - Lidia Martínez
- Instituto de Ciencia de Materiales de Madrid (ICMM, CSIC). Materials Science Factory. Structure of Nanoscopic Systems Group. c/ Sor Juana Ines de la Cruz 3, E-28049 Cantoblanco, Madrid, Spain
| | - Jon Azpeitia
- Instituto de Ciencia de Materiales de Madrid (ICMM, CSIC). Materials Science Factory. Structure of Nanoscopic Systems Group. c/ Sor Juana Ines de la Cruz 3, E-28049 Cantoblanco, Madrid, Spain
| | - Koen Lauwaet
- IMDEA Nanociencia. Ciudad Universitaria de Cantoblanco, E-28049 Cantoblanco, Madrid, Spain
| | - José Cernicharo
- Instituto de Física Fundamental (IFF, CSIC). Group of Molecular Astrophysics. c/ Serrano 123, 28006 Madrid, Spain
| | - Gary J. Ellis
- Instituto de Ciencia y Tecnología de Polímeros (ICTP, CSIC). c/ Juan de la Cierva 3, E-28006 Madrid, Spain
| | - José Ángel Martín-Gago
- Instituto de Ciencia de Materiales de Madrid (ICMM, CSIC). Materials Science Factory. Structure of Nanoscopic Systems Group. c/ Sor Juana Ines de la Cruz 3, E-28049 Cantoblanco, Madrid, Spain
| |
Collapse
|
17
|
Amicangelo JC, Lee YP. Hydrogenation of pyrrole: Infrared spectra of the 2,3-dihydropyrrol-2-yl and 2,3-dihydropyrrol-3-yl radicals isolated in solid para-hydrogen. J Chem Phys 2020; 153:164302. [DOI: 10.1063/5.0024495] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Jay C. Amicangelo
- School of Science, Penn State Erie, The Behrend College, 4205 College Drive, Erie, Pennsylvania 16563, USA
| | - Yuan-Pern Lee
- Department of Applied Chemistry and Institute of Molecular Science, National Chiao Tung University, Hsinchu 300093, Taiwan
- Center for Emergent Functional Matter Science, National Chiao Tung University, Hsinchu 300093, Taiwan
- Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei 106319, Taiwan
| |
Collapse
|
18
|
Derbali I, Hrodmarsson HR, Schwell M, Bénilan Y, Poisson L, Hochlaf M, Alikhani ME, Guillemin JC, Zins EL. Unimolecular decomposition of methyl ketene and its dimer in the gas phase: theory and experiment. Phys Chem Chem Phys 2020; 22:20394-20408. [PMID: 32914152 DOI: 10.1039/d0cp03921g] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We present a combined theoretical and experimental investigation on the single photoionization and dissociative photoionization of gas-phase methyl ketene (MKE) and its neutral dimer (MKE2). The performed experiments entail the recording of photoelectron photoion coincidence (PEPICO) spectra and slow photoelectron spectra (SPES) in the energy regime 8.7-15.5 eV using linearly polarized synchrotron radiation. We observe both dimerization and trimerization of the monomer which brings about significantly complex and abstruse dissociative ionization patterns. These require the implementation of theoretical calculations to explore the potential energy surfaces of the monomer and dimer's neutral and ionized geometries. To this end, explicitly correlated quantum chemical methodologies involving the coupled cluster with single, double and perturbative triple excitations (R)CCSD(T)-F12 method, are utilized. An improvement in the adiabatic ionization energy of MKE is presented (AIE = 8.937 ± 0.020 eV) as well as appearance energies for multiple fragments formed through dissociative ionization of either the MKE monomer or dimer. In this regard, the synergy of experiment and theory is crucial to interpreting the obtained results. We discuss the potential astrochemical implications of this work in the context of recent advances in the field of astrochemistry and speculate on the potential presence and eventual fate of interstellar MKE molecules.
Collapse
Affiliation(s)
- Imene Derbali
- MONARIS UMR 8233 CNRS, Sorbonne Université, 4 Place Jussieu, 75252 Paris Cedex 5, France
| | - Helgi Rafn Hrodmarsson
- Synchrotron SOLEIL, L'Orme des Merisiers, St Aubin, BP 48, Gif sur Yvette, France and Laboratory for Astrophysics, Leiden Observatory, Leiden University, PO Box 9513, NL-2300 RA Leiden, The Netherlands.
| | - Martin Schwell
- LISA UMR 7583 Université Paris-Est Créteil and Université de Paris, Institut Pierre et Simon Laplace, 61 Avenue du Général de Gaulle, 94010 Créteil, France
| | - Yves Bénilan
- LISA UMR 7583 Université Paris-Est Créteil and Université de Paris, Institut Pierre et Simon Laplace, 61 Avenue du Général de Gaulle, 94010 Créteil, France
| | - Lionel Poisson
- Université Paris-Saclay, CEA, CNRS, LIDYL, 91191 Gif-sur-Yvette, France
| | - Majdi Hochlaf
- Université Gustave Eiffel, COSYS/LISIS, 5 Bd Descartes 77454, Champs sur Marne, France.
| | | | - Jean-Claude Guillemin
- Univ Rennes, École Nationale Supérieure de Chimie de Rennes, CNRS, ISCR-UMR6226, F-35000 Rennes, France
| | - Emilie-Laure Zins
- MONARIS UMR 8233 CNRS, Sorbonne Université, 4 Place Jussieu, 75252 Paris Cedex 5, France
| |
Collapse
|
19
|
Blázquez S, González D, Neeman EM, Ballesteros B, Agúndez M, Canosa A, Albaladejo J, Cernicharo J, Jiménez E. Gas-phase kinetics of CH 3CHO with OH radicals between 11.7 and 177.5 K. Phys Chem Chem Phys 2020; 22:20562-20572. [PMID: 32966434 PMCID: PMC7116299 DOI: 10.1039/d0cp03203d] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Gas-phase reactions in the interstellar medium (ISM) are a source of molecules in this environment. The knowledge of the rate coefficient for neutral-neutral reactions as a function of temperature, k(T), is essential to improve astrochemical models. In this work, we have experimentally measured k(T) for the reaction between the OH radical and acetaldehyde, both present in many sources of the ISM. Laser techniques coupled to a CRESU system were used to perform the kinetic measurements. The obtained modified Arrhenius equation is k(T = 11.7-177.5 K) = (1.2 ± 0.2) × 10-11 (T/300 K)-(1.8±0.1) exp-{(28.7 ± 2.5)/T} cm3 molecule-1 s-1. The k(T) value of the title reaction has been measured for the first time below 60 K. No pressure dependence of k(T) was observed at ca. 21, 50, 64 and 106 K. Finally, a pure gas-phase model indicates that the title reaction could become the main CH3CO formation pathway in dark molecular clouds, assuming that CH3CO is the main reaction product at 10 K.
Collapse
Affiliation(s)
- Sergio Blázquez
- Departamento de Química Física, Facultad de Ciencias y Tecnologías Químicas, Universidad de Castilla-La Mancha, Avda. Camilo José Cela 1B, 13071, Ciudad Real, Spain.
| | - Daniel González
- Departamento de Química Física, Facultad de Ciencias y Tecnologías Químicas, Universidad de Castilla-La Mancha, Avda. Camilo José Cela 1B, 13071, Ciudad Real, Spain.
| | - Elias M Neeman
- Departamento de Química Física, Facultad de Ciencias y Tecnologías Químicas, Universidad de Castilla-La Mancha, Avda. Camilo José Cela 1B, 13071, Ciudad Real, Spain.
| | - Bernabé Ballesteros
- Departamento de Química Física, Facultad de Ciencias y Tecnologías Químicas, Universidad de Castilla-La Mancha, Avda. Camilo José Cela 1B, 13071, Ciudad Real, Spain. and Instituto de Investigación en Combustión y Contaminación Atmosférica (ICCA), Universidad de Castilla-La Mancha, Camino de Moledores s/n, 13071, Ciudad Real, Spain
| | - Marcelino Agúndez
- Molecular Astrophysics Group, Instituto de Física Fundamental (IFF-CSIC), Consejo Superior de Investigaciones Científicas, C/Serrano 123, 28006, Madrid, Spain
| | - André Canosa
- CNRS, IPR (Institut de Physique de Rennes)-UMR 6251, Université de Rennes, F-35000 Rennes, France
| | - José Albaladejo
- Departamento de Química Física, Facultad de Ciencias y Tecnologías Químicas, Universidad de Castilla-La Mancha, Avda. Camilo José Cela 1B, 13071, Ciudad Real, Spain. and Instituto de Investigación en Combustión y Contaminación Atmosférica (ICCA), Universidad de Castilla-La Mancha, Camino de Moledores s/n, 13071, Ciudad Real, Spain
| | - José Cernicharo
- Molecular Astrophysics Group, Instituto de Física Fundamental (IFF-CSIC), Consejo Superior de Investigaciones Científicas, C/Serrano 123, 28006, Madrid, Spain
| | - Elena Jiménez
- Departamento de Química Física, Facultad de Ciencias y Tecnologías Químicas, Universidad de Castilla-La Mancha, Avda. Camilo José Cela 1B, 13071, Ciudad Real, Spain. and Instituto de Investigación en Combustión y Contaminación Atmosférica (ICCA), Universidad de Castilla-La Mancha, Camino de Moledores s/n, 13071, Ciudad Real, Spain
| |
Collapse
|
20
|
Baiano C, Lupi J, Tasinato N, Puzzarini C, Barone V. The Role of State-of-the-Art Quantum-Chemical Calculations in Astrochemistry: Formation Route and Spectroscopy of Ethanimine as a Paradigmatic Case. Molecules 2020; 25:E2873. [PMID: 32580443 PMCID: PMC7357107 DOI: 10.3390/molecules25122873] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2020] [Revised: 06/17/2020] [Accepted: 06/18/2020] [Indexed: 12/13/2022] Open
Abstract
The gas-phase formation and spectroscopic characteristics of ethanimine have been re-investigated as a paradigmatic case illustrating the accuracy of state-of-the-art quantum-chemical (QC) methodologies in the field of astrochemistry. According to our computations, the reaction between the amidogen, NH, and ethyl, C2H5, radicals is very fast, close to the gas-kinetics limit. Although the main reaction channel under conditions typical of the interstellar medium leads to methanimine and the methyl radical, the predicted amount of the two E,Z stereoisomers of ethanimine is around 10%. State-of-the-art QC and kinetic models lead to a [E-CH3CHNH]/[Z-CH3CHNH] ratio of ca. 1.4, slightly higher than the previous computations, but still far from the value determined from astronomical observations (ca. 3). An accurate computational characterization of the molecular structure, energetics, and spectroscopic properties of the E and Z isomers of ethanimine combined with millimeter-wave measurements up to 300 GHz, allows for predicting the rotational spectrum of both isomers up to 500 GHz, thus opening the way toward new astronomical observations.
Collapse
Affiliation(s)
- Carmen Baiano
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy; (C.B.); (J.L.); (N.T.)
| | - Jacopo Lupi
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy; (C.B.); (J.L.); (N.T.)
| | - Nicola Tasinato
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy; (C.B.); (J.L.); (N.T.)
| | - Cristina Puzzarini
- Dipartimento di Chimica “Giacomo Ciamician”, Università di Bologna, Via F. Selmi 2, 40126 Bologna, Italy
| | - Vincenzo Barone
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy; (C.B.); (J.L.); (N.T.)
| |
Collapse
|
21
|
Potapov A, Jäger C, Henning T. Ice Coverage of Dust Grains in Cold Astrophysical Environments. PHYSICAL REVIEW LETTERS 2020; 124:221103. [PMID: 32567895 DOI: 10.1103/physrevlett.124.221103] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2020] [Revised: 04/14/2020] [Accepted: 05/01/2020] [Indexed: 06/11/2023]
Abstract
Surface processes on cosmic solids in cold astrophysical environments lead to gas-phase depletion and molecular complexity. Most astrophysical models assume that the molecular ice forms a thick multilayer substrate, not interacting with the dust surface. In contrast, we present experimental results demonstrating the importance of the surface for porous grains. We show that cosmic dust grains may be covered by a few monolayers of ice only. This implies that the role of dust surface structure, composition, and reactivity in models describing surface processes in cold interstellar, protostellar, and protoplanetary environments has to be reevaluated.
Collapse
Affiliation(s)
- Alexey Potapov
- Laboratory Astrophysics Group of the Max Planck Institute for Astronomy at the Friedrich Schiller University Jena, Institute of Solid State Physics, Helmholtzweg 3, 07743 Jena, Germany
| | - Cornelia Jäger
- Laboratory Astrophysics Group of the Max Planck Institute for Astronomy at the Friedrich Schiller University Jena, Institute of Solid State Physics, Helmholtzweg 3, 07743 Jena, Germany
| | - Thomas Henning
- Max Planck Institute for Astronomy, Königstuhl 17, D-69117 Heidelberg, Germany
| |
Collapse
|
22
|
Qasim D, Witlox MJA, Fedoseev G, Chuang KJ, Banu T, Krasnokutski SA, Ioppolo S, Kästner J, van Dishoeck EF, Linnartz H. A cryogenic ice setup to simulate carbon atom reactions in interstellar ices. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2020; 91:054501. [PMID: 32486761 DOI: 10.1063/5.0003692] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2020] [Accepted: 04/14/2020] [Indexed: 06/11/2023]
Abstract
The design, implementation, and performance of a customized carbon atom beam source for the purpose of investigating solid-state reaction routes in interstellar ices in molecular clouds are discussed. The source is integrated into an existing ultrahigh vacuum setup, SURFace REaction SImulation DEvice (SURFRESIDE2), which extends this double atom (H/D, O, and N) beamline apparatus with a third atom (C) beamline to a unique system that is fully suited to explore complex organic molecule solid-state formation under representative interstellar cloud conditions. The parameter space for this system is discussed, which includes the flux of the carbon atoms hitting the ice sample, their temperature, and the potential impact of temperature on ice reactions. Much effort has been put into constraining the beam size to within the limits of the sample size with the aim of reducing carbon pollution inside the setup. How the C-atom beam performs is quantitatively studied through the example experiment, C + 18O2, and supported by computationally derived activation barriers. The potential for this source to study the solid-state formation of interstellar complex organic molecules through C-atom reactions is discussed.
Collapse
Affiliation(s)
- D Qasim
- Laboratory for Astrophysics, Leiden Observatory, Leiden University, P.O. Box 9513, NL-2300 RA Leiden, The Netherlands
| | - M J A Witlox
- Fine Mechanical Department, Leiden Institute for Physics Research (LION), Niels Bohrweg 2, NL-2333 CA Leiden, The Netherlands
| | - G Fedoseev
- Laboratory for Astrophysics, Leiden Observatory, Leiden University, P.O. Box 9513, NL-2300 RA Leiden, The Netherlands
| | - K-J Chuang
- Laboratory Astrophysics Group of the Max Planck Institute for Astronomy at the Friedrich Schiller University Jena, Institute of Solid State Physics, Helmholtzweg 3, D-07743 Jena, Germany
| | - T Banu
- Institute for Theoretical Chemistry, University of Stuttgart, D-70569 Stuttgart, Germany
| | - S A Krasnokutski
- Laboratory Astrophysics Group of the Max Planck Institute for Astronomy at the Friedrich Schiller University Jena, Institute of Solid State Physics, Helmholtzweg 3, D-07743 Jena, Germany
| | - S Ioppolo
- School of Electronic Engineering and Computer Science, Queen Mary University of London, Mile End Road, London E1 4NS, United Kingdom
| | - J Kästner
- Institute for Theoretical Chemistry, University of Stuttgart, D-70569 Stuttgart, Germany
| | - E F van Dishoeck
- Leiden Observatory, Leiden University, P.O. Box 9513, NL-2300 RA Leiden, The Netherlands
| | - H Linnartz
- Laboratory for Astrophysics, Leiden Observatory, Leiden University, P.O. Box 9513, NL-2300 RA Leiden, The Netherlands
| |
Collapse
|
23
|
|
24
|
Methikkalam RRJ, Ghosh J, Bhuin RG, Bag S, Ragupathy G, Pradeep T. Iron assisted formation of CO2 over condensed CO and its relevance to interstellar chemistry. Phys Chem Chem Phys 2020; 22:8491-8498. [DOI: 10.1039/c9cp06983f] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Catalytic conversion of CO to CO2 assisted by neutral iron atoms has been investigated in ultrahigh vacuum (UHV) under cryogenic conditions (10 K).
Collapse
Affiliation(s)
- Rabin Rajan J. Methikkalam
- DST Unit of Nanoscience (DST UNS) and Thematic Unit of Excellence (TUE)
- Department of Chemistry
- Indian Institute of Technology Madras
- Chennai 600 036
- India
| | - Jyotirmoy Ghosh
- DST Unit of Nanoscience (DST UNS) and Thematic Unit of Excellence (TUE)
- Department of Chemistry
- Indian Institute of Technology Madras
- Chennai 600 036
- India
| | - Radha Gobinda Bhuin
- DST Unit of Nanoscience (DST UNS) and Thematic Unit of Excellence (TUE)
- Department of Chemistry
- Indian Institute of Technology Madras
- Chennai 600 036
- India
| | - Soumabha Bag
- DST Unit of Nanoscience (DST UNS) and Thematic Unit of Excellence (TUE)
- Department of Chemistry
- Indian Institute of Technology Madras
- Chennai 600 036
- India
| | - Gopi Ragupathy
- DST Unit of Nanoscience (DST UNS) and Thematic Unit of Excellence (TUE)
- Department of Chemistry
- Indian Institute of Technology Madras
- Chennai 600 036
- India
| | - Thalappil Pradeep
- DST Unit of Nanoscience (DST UNS) and Thematic Unit of Excellence (TUE)
- Department of Chemistry
- Indian Institute of Technology Madras
- Chennai 600 036
- India
| |
Collapse
|
25
|
El-Abd SJ, Brogan CL, Hunter TR, Willis ER, Garrod RT, McGuire BA. Interstellar Glycolaldehyde, Methyl Formate, and Acetic Acid. I. A Bimodal Abundance Pattern in Star-forming Regions. THE ASTROPHYSICAL JOURNAL 2019; 883:129. [DOI: 10.3847/1538-4357/ab3646] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/02/2023]
|
26
|
Pysanenko A, Gámez F, Fárníková K, Pluhařová E, Fárník M. Proton Transfer Reactions between Methanol and Formic Acid Deposited on Free ArN Nanoparticles. J Phys Chem A 2019; 123:7201-7209. [DOI: 10.1021/acs.jpca.9b05372] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Andriy Pysanenko
- J. Heyrovský Institute of Physical Chemistry, The Czech Academy of Sciences, Dolejškova 3, 182 23 Prague, Czech Republic
| | - Francisco Gámez
- J. Heyrovský Institute of Physical Chemistry, The Czech Academy of Sciences, Dolejškova 3, 182 23 Prague, Czech Republic
| | - Karolína Fárníková
- J. Heyrovský Institute of Physical Chemistry, The Czech Academy of Sciences, Dolejškova 3, 182 23 Prague, Czech Republic
| | - Eva Pluhařová
- J. Heyrovský Institute of Physical Chemistry, The Czech Academy of Sciences, Dolejškova 3, 182 23 Prague, Czech Republic
| | - Michal Fárník
- J. Heyrovský Institute of Physical Chemistry, The Czech Academy of Sciences, Dolejškova 3, 182 23 Prague, Czech Republic
| |
Collapse
|
27
|
Volosatova AD, Kameneva SV, Feldman VI. Formation and interconversion of CCN and CNC radicals resulting from the radiation-induced decomposition of acetonitrile in solid noble gas matrices. Phys Chem Chem Phys 2019; 21:13014-13021. [PMID: 31166329 DOI: 10.1039/c8cp07896c] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Abstract
Acetonitrile and the species resulting from its dehydrogenation play an important role in the radiation-induced evolution of organic matter in the space environment. In this work, we report on FTIR spectroscopic studies of the degradation of isolated CH3CN and CD3CN molecules induced by prolonged X-ray irradiation in solid noble gas matrices at 5 K. The principal products observed at high conversion degree of the parent acetonitrile molecules (70-90%) are CCN and CNC radicals, which result from prompt or two-step dehydrogenation of the corresponding precursors, H2CN and CH2NC radicals, respectively. CHCN and CHNC were also found as products of dehydrogenation at high absorbed doses, whereas the fragmentation products (CH3, CN, HCN, and HNC) were detected only in minor amounts over the whole dose range studied. CCN and CNC are produced in nearly equal amounts at high absorbed doses. Selective isomerization of CCN to CNC was observed under the illumination with visible light (460-470 nm), while subsequent action of the UV light (254 nm) induced reverse transformation leading to a photostationary state with the relative population of CNC/CCN being ca. 0.7. The astrochemical implications of the obtained results are discussed in connection with the recent discovery of CCN in extraterrestrial objects.
Collapse
|
28
|
Ocaña AJ, Blázquez S, Potapov A, Ballesteros B, Canosa A, Antiñolo M, Vereecken L, Albaladejo J, Jiménez E. Gas-phase reactivity of CH 3OH toward OH at interstellar temperatures (11.7-177.5 K): experimental and theoretical study. Phys Chem Chem Phys 2019; 21:6942-6957. [PMID: 30868151 DOI: 10.1039/c9cp00439d] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The reactivity of methanol (CH3OH) toward the hydroxyl (OH) radical was investigated in the temperature range 11.7-177.5 K using the CRESU (French acronym for Reaction Kinetics in a Uniform Supersonic Flow) technique. In the present study, the temperature dependence of the rate coefficient for the OH + CH3OH reaction, k(T), has been revisited and additional experimental and computational data are reported. New kinetic measurements were performed to fill the existing gaps (<22 K, 22-42 K and 88-123 K), reporting k(T < 20 K) for the first time. The lowest temperature ever achieved by a pulsed CRESU has been obtained in this work (11.7 K). k(T) abruptly increases by almost 2 orders of magnitude from 177.5 K to around 100 K. At T < 100 K, this increase is less pronounced, reaching the capture limit at temperatures below 22 K. The pressure dependence of k(T) has been investigated for selected temperatures and gas densities (1.5 × 1016 to 4.3 × 1017 cm-3), combining our results with those previously reported. No dependence was observed within the experimental uncertainties below 110 K. The high- and low-pressure rate coefficients, kHPL(T) and kLPL(T), were also studied in detail using high-level quantum chemical and theoretical kinetic methodologies, closely reproducing the experimental data between 20 and 400 K. The results suggest that the experimental data are near the high pressure limit at the lowest temperatures, but that the reaction remains a fast and effective source of CH2OH and CH3O at the low pressures and temperatures prevalent in the interstellar medium.
Collapse
Affiliation(s)
- Antonio J Ocaña
- Departamento de Química Física, Facultad de Ciencias y Tecnologías Químicas, Universidad de Castilla-La Mancha, Avda. Camilo José Cela, 1B, 13071 Ciudad Real, Spain.
| | | | | | | | | | | | | | | | | |
Collapse
|
29
|
Balucani N. An atomistic approach to prebiotic chemistry: A tool to overcome the limits of laboratory simulations: Comment on "Prebiotic chemistry and origins of life research with atomistic computer simulations". Phys Life Rev 2019; 34-35:136-138. [PMID: 30905552 DOI: 10.1016/j.plrev.2019.03.006] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2019] [Accepted: 03/13/2019] [Indexed: 11/26/2022]
Affiliation(s)
- Nadia Balucani
- Dipartimento di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, Perugia, Italy.
| |
Collapse
|
30
|
Gámez F, Pysanenko A, Fárník M, Ončák M. Ionization of carboxylic acid clusters in the gas phase and on free ArN and (H2O)N nanoparticles: valeric acid as a model for small carboxylic acids. Phys Chem Chem Phys 2019; 21:19201-19208. [DOI: 10.1039/c9cp03279g] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In ionized valeric acid clusters, not only the expected proton transfer reaction, but also anhydride formation is observed. Could this be a common motif in the ionization chemistry of small carboxylic acid clusters?
Collapse
Affiliation(s)
- Francisco Gámez
- J. Heyrovský Institute of Physical Chemistry
- v.v.i., Czech Academy of Sciences
- Dolejškova 2155/3
- 182 23 Prague
- Czech Republic
| | - Andriy Pysanenko
- J. Heyrovský Institute of Physical Chemistry
- v.v.i., Czech Academy of Sciences
- Dolejškova 2155/3
- 182 23 Prague
- Czech Republic
| | - Michal Fárník
- J. Heyrovský Institute of Physical Chemistry
- v.v.i., Czech Academy of Sciences
- Dolejškova 2155/3
- 182 23 Prague
- Czech Republic
| | - Milan Ončák
- Institut für Ionenphysik und Angewandte Physik
- Universität Innsbruck
- A-6020 Innsbruck
- Austria
| |
Collapse
|
31
|
Arumainayagam CR, Garrod RT, Boyer MC, Hay AK, Bao ST, Campbell JS, Wang J, Nowak CM, Arumainayagam MR, Hodge PJ. Extraterrestrial prebiotic molecules: photochemistryvs.radiation chemistry of interstellar ices. Chem Soc Rev 2019; 48:2293-2314. [DOI: 10.1039/c7cs00443e] [Citation(s) in RCA: 79] [Impact Index Per Article: 15.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Photochemistry and radiation chemistry of interstellar ices lead to the synthesis of prebiotic molecules which may be delivered to planets by meteorites and/or comets.
Collapse
Affiliation(s)
| | - Robin T. Garrod
- University of Virginia
- Astronomy & Chemistry
- Charlottesville
- USA
| | | | | | | | | | | | | | | | | |
Collapse
|
32
|
Amicangelo JC, Lee YP. Infrared spectra of the 1,1-dimethylallyl and 1,2-dimethylallyl radicals isolated in solidpara-hydrogen. J Chem Phys 2018; 149:204304. [DOI: 10.1063/1.5054653] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Jay C. Amicangelo
- School of Science, Penn State Erie, The Behrend College, 4205 College Drive, Erie, Pennsylvania 16563, USA
| | - Yuan-Pern Lee
- Department of Applied Chemistry and Institute of Molecular Science, National Chiao Tung University, Hsinchu 30010, Taiwan
- Center for Emergent Functional Matter Science, National Chiao Tung University, Hsinchu 30010, Taiwan
- Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei 10617, Taiwan
| |
Collapse
|
33
|
2018 Census of Interstellar, Circumstellar, Extragalactic, Protoplanetary Disk, and Exoplanetary Molecules. ACTA ACUST UNITED AC 2018. [DOI: 10.3847/1538-4365/aae5d2] [Citation(s) in RCA: 281] [Impact Index Per Article: 46.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
|
34
|
Pantaleone S, Ugliengo P, Sodupe M, Rimola A. When the Surface Matters: Prebiotic Peptide-Bond Formation on the TiO 2 (101) Anatase Surface through Periodic DFT-D2 Simulations. Chemistry 2018; 24:16292-16301. [PMID: 30212609 DOI: 10.1002/chem.201803263] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2018] [Indexed: 12/13/2022]
Abstract
The mechanism of the peptide-bond formation between two glycine (Gly) molecules has been investigated by means of PBE-D2* and PBE0-D2* periodic simulations on the TiO2 (101) anatase surface. This is a process of great relevance both in fundamental prebiotic chemistry, as the reaction univocally belongs to one of the different organizational events that ultimately led to the emergence of life on Earth, as well as from an industrial perspective, since formation of amides is a key reaction for pharmaceutical companies. The efficiency of the surface catalytic sites is demonstrated by comparing the reactions in the gas phase and on the surface. At variance with the uncatalyzed gas-phase reaction, which involves a concerted nucleophilic attack and dehydration step, on the surface these two steps occur along a stepwise mechanism. The presence of surface Lewis and Brönsted sites exerts some catalytic effect by lowering the free energy barrier for the peptide-bond formation by about 6 kcal mol-1 compared to the gas-phase reaction. Moreover, the co-presence of molecules acting as proton-transfer assistants (i.e., H2 O and Gly) provide a more significant kinetic energy barrier decrease. The reaction on the surface is also favorable from a thermodynamic standpoint, involving very large and negative reaction energies. This is due to the fact that the anatase surface also acts as a dehydration agent during the condensation reaction, since the outermost coordinatively unsaturated Ti atoms strongly anchor the released water molecules. Our theoretical results provide a comprehensive atomistic interpretation of the experimental results of Martra et al. (Angew. Chem. Int. Ed. 2014, 53, 4671), in which polyglycine formation was obtained by successive feedings of Gly vapor on TiO2 surfaces in dry conditions and are, therefore, relevant in a prebiotic context envisaging dry and wet cycles occurring, at mineral surfaces, in a small pool.
Collapse
Affiliation(s)
- Stefano Pantaleone
- Departament de Química, Universitat Autònoma de Barcelona, Bellaterra, 08193, Catalonia, Spain
| | - Piero Ugliengo
- Dipartimento di Chimica and Nanostructured Interfaces and Surfaces (NIS), Inter-Departmental centre, Università degli Studi di Torino, Via P. Giuria 7, 10125, Torino, Italy
| | - Mariona Sodupe
- Departament de Química, Universitat Autònoma de Barcelona, Bellaterra, 08193, Catalonia, Spain
| | - Albert Rimola
- Departament de Química, Universitat Autònoma de Barcelona, Bellaterra, 08193, Catalonia, Spain
| |
Collapse
|
35
|
Abstract
AbstractThis paper provides a brief overview of the journey of molecules through the Cosmos, from local diffuse interstellar clouds and PDRs to distant galaxies, and from cold dark clouds to hot star-forming cores, protoplanetary disks, planetesimals and exoplanets. Recent developments in each area are sketched and the importance of connecting astronomy with chemistry and other disciplines is emphasized. Fourteen challenges for the field of Astrochemistry in the coming decades are formulated.
Collapse
|
36
|
Kofman V, Witlox MJA, Bouwman J, Ten Kate IL, Linnartz H. A multifunctional setup to record FTIR and UV-vis spectra of organic molecules and their photoproducts in astronomical ices. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2018; 89:053111. [PMID: 29864809 DOI: 10.1063/1.5027079] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
This article describes a new, multi-functional, high-vacuum ice setup that allows to record the in situ and real-time spectra of vacuum UV (VUV)-irradiated non-volatile molecules embedded in a low-temperature (10 K) amorphous solid water environment. Three complementary diagnostic tools-UV-visible (UV-vis) and Fourier Transform Infrared (FTIR) spectroscopy and temperature-programmed desorption quadrupole mass spectrometry-can be used to simultaneously study the physical and chemical behavior of the organic molecules in the ice upon VUV irradiation. The setup is equipped with a temperature-controlled sublimation oven that enables the controlled homogeneous deposition of solid species such as amino acids, nucleobases, and polycyclic aromatic hydrocarbons (PAHs) in ice mixtures prepared from precursor gases and/or liquids. The resulting ice is photo-processed with a microwave discharge hydrogen lamp, generating VUV radiation with a spectral energy distribution representative for the interstellar medium. The characteristics, performance, and future potential of the system are discussed by describing three different applications. First, a new method is introduced, which uses broadband interference transmission fringes recorded during ice deposition, to determine the wavelength-dependent refractive index, nλ, of amorphous solid water. This approach is also applicable to other solids, pure and mixed. Second, the UV-vis and FTIR spectroscopy of an VUV-irradiated triphenylene:water ice mixture is discussed, monitoring the ionization efficiency of PAHs in interstellar ice environments. The third and final example investigates the stability of solid glycine upon VUV irradiation by monitoring the formation of dissociation products in real time.
Collapse
Affiliation(s)
- V Kofman
- Sackler Laboratory for Astrophysics, Leiden Observatory, Leiden University, P.O. Box 9513, NL 2300 RA Leiden, The Netherlands
| | - M J A Witlox
- Fine Mechanical Department, Leiden Institute for Physics Research (LION), Niels Bohrweg 2, NL 2333 CA Leiden, The Netherlands
| | - J Bouwman
- Sackler Laboratory for Astrophysics, Leiden Observatory, Leiden University, P.O. Box 9513, NL 2300 RA Leiden, The Netherlands
| | - I L Ten Kate
- Department of Earth Sciences, Utrecht University, Budapestlaan 4, 3584 CD Utrecht, The Netherlands
| | - H Linnartz
- Sackler Laboratory for Astrophysics, Leiden Observatory, Leiden University, P.O. Box 9513, NL 2300 RA Leiden, The Netherlands
| |
Collapse
|
37
|
Sleiman C, El Dib G, Rosi M, Skouteris D, Balucani N, Canosa A. Low temperature kinetics and theoretical studies of the reaction CN + CH 3NH 2: a potential source of cyanamide and methyl cyanamide in the interstellar medium. Phys Chem Chem Phys 2018; 20:5478-5489. [PMID: 29082409 DOI: 10.1039/c7cp05746f] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The reaction between cyano radicals (which are ubiquitous in interstellar clouds) and methylamine (a molecule detected in various interstellar sources) has been investigated in a synergistic experimental and theoretical study. The reaction has been found to be very fast in the entire range of temperatures investigated (23-297 K) by using a CRESU apparatus coupled to pulsed laser photolysis - laser induced fluorescence. The global experimental rate coefficient is given by In addition, dedicated electronic structure calculations of the underlying potential energy surface have been performed, together with capture theory and RRKM calculations. The experimental data have been interpreted in the light of the theoretical calculations and the product branching ratio has been established. According to the present study, in the range of temperatures investigated the title reaction is an efficient interstellar route of formation of cyanamide, NH2CN, another interstellar species. The second most important channel is the one leading to methyl cyanamide, CH3NHCN (an isomer of aminoacetonitrile), via a CN/H exchange mechanism with a yield of 12% of the global reaction in the entire range of temperatures explored. For a possible inclusion in future astrochemical models we suggest, by referring to the usual expression the following values: α = 3.68 × 10-12 cm3 molec-1 s-1, β = -1.80, γ = 7.79 K for the channel leading to NH2CN + CH3; α = 5.05 × 10-13 cm3 molec-1 s-1, β = -1.82, γ = 7.93 K for the channel leading to CH3NHCN + H.
Collapse
Affiliation(s)
- Chantal Sleiman
- Institut de Physique de Rennes, UMR 6251 du CNRS - Université de Rennes 1, Bat. 11C, Campus de Beaulieu, 263 Avenue du Général Leclerc, F-35042 Rennes Cedex, France.
| | | | | | | | | | | |
Collapse
|
38
|
de Val-Borro M, Milam SN, Cordiner MA, Charnley SB, Coulson IM, Remijan AJ, Villanueva GL. Measuring molecular abundances in comet C/2014 Q2 (Lovejoy) using the APEX telescope. MONTHLY NOTICES OF THE ROYAL ASTRONOMICAL SOCIETY 2018; 474:1099-1107. [PMID: 30420786 PMCID: PMC6225067 DOI: 10.1093/mnras/stx2802] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Comet composition provides critical information on the chemical and physical processes that took place during the formation of the Solar System. We report here on millimeter spectroscopic observations of the long-period bright comet C/2014 Q2 (Lovejoy) using the Atacama Pathfinder Experiment (APEX) band 1 receiver between UT 16.948 to 18.120 January 2015, when the comet was at heliocentric distance of 1.30 au and geocentric distance of 0.53 au. Bright comets allow for sensitive observations of gaseous volatiles that sublimate in their coma. These observations allowed us to detect HCN, CH3OH (multiple transitions), H2CO and CO, and to measure precise molecular production rates. Additionally, sensitive upper limits were derived on the complex molecules acetaldehyde (CH3CHO) and formamide (NH2CHO) based on the average of the strongest lines in the targeted spectral range to improve the signal-to-noise ratio. Gas production rates are derived using a non-LTE molecular excitation calculation involving collisions with H2O and radiative pumping that becomes important in the outer coma due to solar radiation. We find a depletion of CO in C/2014 Q2 (Lovejoy) with a production rate relative to water of 2.0 %, and relatively low abundances of Q(HCN)/Q (H2O),0.1%, and Q (H2CO)/Q (H2O), 0.2 %. In contrast the CH3OH relative abundance Q (CH3OH)/Q (H2O),2.2 %, is close to the mean value observed in other comets. The measured production rates are consistent with values derived for this object from other facilities at similar wavelengths taking into account the difference in the fields of view. Based on the observed mixing ratios of organic molecules in four bright comets including C/2014 Q2, we find some support for atom addition reactions on cold dust being the origin of some of the molecules.
Collapse
Affiliation(s)
- M. de Val-Borro
- NASA Goddard Space Flight Center, Astrochemistry Laboratory, 8800 Greenbelt Road, Greenbelt, MD 20771, USA
- Department of Physics, Catholic University of America, Washington, DC 20064, USA
| | - S. N. Milam
- NASA Goddard Space Flight Center, Astrochemistry Laboratory, 8800 Greenbelt Road, Greenbelt, MD 20771, USA
| | - M. A. Cordiner
- NASA Goddard Space Flight Center, Astrochemistry Laboratory, 8800 Greenbelt Road, Greenbelt, MD 20771, USA
- Department of Physics, Catholic University of America, Washington, DC 20064, USA
| | - S. B. Charnley
- NASA Goddard Space Flight Center, Astrochemistry Laboratory, 8800 Greenbelt Road, Greenbelt, MD 20771, USA
| | | | - A. J. Remijan
- National Radio Astronomy Observatory, Charlottesville, VA 22903, USA
| | - G. L. Villanueva
- NASA Goddard Space Flight Center, Astrochemistry Laboratory, 8800 Greenbelt Road, Greenbelt, MD 20771, USA
| |
Collapse
|
39
|
O'D Alexander CM, McKeegan KD, Altwegg K. Water Reservoirs in Small Planetary Bodies: Meteorites, Asteroids, and Comets. SPACE SCIENCE REVIEWS 2018; 214:36. [PMID: 30842688 PMCID: PMC6398961 DOI: 10.1007/s11214-018-0474-9] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2018] [Accepted: 01/11/2018] [Indexed: 06/09/2023]
Abstract
Asteroids and comets are the remnants of the swarm of planetesimals from which the planets ultimately formed, and they retain records of processes that operated prior to and during planet formation. They are also likely the sources of most of the water and other volatiles accreted by Earth. In this review, we discuss the nature and probable origins of asteroids and comets based on data from remote observations, in situ measurements by spacecraft, and laboratory analyses of meteorites derived from asteroids. The asteroidal parent bodies of meteorites formed ≤4 Ma after Solar System formation while there was still a gas disk present. It seems increasingly likely that the parent bodies of meteorites spectroscopically linked with the E-, S-, M- and V-type asteroids formed sunward of Jupiter's orbit, while those associated with C- and, possibly, D-type asteroids formed further out, beyond Jupiter but probably not beyond Saturn's orbit. Comets formed further from the Sun than any of the meteorite parent bodies, and retain much higher abundances of interstellar material. CI and CM group meteorites are probably related to the most common C-type asteroids, and based on isotopic evidence they, rather than comets, are the most likely sources of the H and N accreted by the terrestrial planets. However, comets may have been major sources of the noble gases accreted by Earth and Venus. Possible constraints that these observations can place on models of giant planet formation and migration are explored.
Collapse
Affiliation(s)
- Conel M O'D Alexander
- Dept. Terrestrial Magnetism, Carnegie Institution for Science, 5241 Broad Branch Road NW, Washington, DC 20015, USA. . Tel. (202) 478 8478
| | - Kevin D McKeegan
- Department of Earth, Planetary, and Space Sciences, University of California-Los Angeles, Los Angeles, CA 90095-1567, USA.
| | - Kathrin Altwegg
- Physikalisches Institut, University of Bern, Sidlerstrasse 5, CH-3012 Bern, Switzerland.
| |
Collapse
|
40
|
Balabanoff ME, Ruzi M, Anderson DT. Signatures of a quantum diffusion limited hydrogen atom tunneling reaction. Phys Chem Chem Phys 2018; 20:422-434. [DOI: 10.1039/c7cp05064j] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
We are studying the details of hydrogen atom (H atom) quantum diffusion in parahydrogen quantum solids in an effort to better understand H atom transport and reactivity under these conditions.
Collapse
Affiliation(s)
| | - Mahmut Ruzi
- Department of Chemistry
- University of Wyoming
- Laramie
- USA
| | | |
Collapse
|
41
|
Kayanuma M, Kidachi K, Shoji M, Komatsu Y, Sato A, Shigeta Y, Aikawa Y, Umemura M. A theoretical study of the formation of glycine via hydantoin intermediate in outer space environment. Chem Phys Lett 2017. [DOI: 10.1016/j.cplett.2017.09.016] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
|
42
|
|
43
|
Formation of Glycerol through Hydrogenation of CO Ice under Prestellar Core Conditions. ACTA ACUST UNITED AC 2017. [DOI: 10.3847/1538-4357/aa74dc] [Citation(s) in RCA: 64] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
|
44
|
|
45
|
Haupa KA, Tielens AGGM, Lee YP. Reaction of H + HONO in solid para-hydrogen: infrared spectrum of ˙ONH(OH). Phys Chem Chem Phys 2017; 19:16169-16177. [DOI: 10.1039/c7cp02621h] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Hydrogenation reactions in the N/O chemical network are important for an understanding of the mechanism of formation of organic molecules in dark interstellar clouds, but many reactions remain unknown.
Collapse
Affiliation(s)
- Karolina Anna Haupa
- Department of Applied Chemistry and Institute of Molecular Science
- National Chiao Tung University
- Hsinchu 30010
- Taiwan
| | | | - Yuan-Pern Lee
- Department of Applied Chemistry and Institute of Molecular Science
- National Chiao Tung University
- Hsinchu 30010
- Taiwan
- Institute of Atomic and Molecular Sciences
| |
Collapse
|
46
|
McGuire BA, Ioppolo S, Allodi MA, Blake GA. THz time-domain spectroscopy of mixed CO2-CH3OH interstellar ice analogs. Phys Chem Chem Phys 2016; 18:20199-207. [PMID: 27306081 PMCID: PMC6842323 DOI: 10.1039/c6cp00632a] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The icy mantles of interstellar dust grains are the birthplaces of the primordial prebiotic molecular inventory that may eventually seed nascent solar systems and the planets and planetesimals that form therein. Here, we present a study of two of the most abundant species in these ices after water: carbon dioxide (CO2) and methanol (CH3OH), using TeraHertz (THz) time-domain spectroscopy and mid-infrared spectroscopy. We study pure and mixed-ices of these species, and demonstrate the power of the THz region of the spectrum to elucidate the long-range structure (i.e. crystalline versus amorphous) of the ice, the degree of segregation of these species within the ice, and the thermal history of the species within the ice. Finally, we comment on the utility of the THz transitions arising from these ices for use in astronomical observations of interstellar ices.
Collapse
Affiliation(s)
- Brett A McGuire
- National Radio Astronomy Observatory, 520 Edgemont Rd, Charlottesville, VA 22903, USA. and Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA 91125, USA
| | - Sergio Ioppolo
- Department of Physical Sciences, The Open University, Walton Hall, Milton Keynes, MK7 6AA, UK and Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA 91125, USA.
| | - Marco A Allodi
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA 91125, USA and Department of Chemistry, The Institute for Biophysical Dynamics, and the James Franck Institute, The University of Chicago, Chicago, IL 60637, USA
| | - Geoffrey A Blake
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA 91125, USA and Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA 91125, USA.
| |
Collapse
|
47
|
|
48
|
Bossa JB, Maté B, Fransen C, Cazaux S, Pilling S, Rocha WRM, Ortigoso J, Linnartz H. POROSITY AND BAND-STRENGTH MEASUREMENTS OF MULTI-PHASE COMPOSITE ICES. ACTA ACUST UNITED AC 2015. [DOI: 10.1088/0004-637x/814/1/47] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
|