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For: Felsenstein J. The troubled growth of statistical phylogenetics. Syst Biol 2001;50:465-7. [PMID: 12116645 DOI: 10.1080/10635150119297] [Citation(s) in RCA: 58] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]  Open
Number Cited by Other Article(s)
1
Francisco Barbosa F, Mermudes JRM, Russo CAM. Performance of tree-building methods using a morphological dataset and a well-supported Hexapoda phylogeny. PeerJ 2024;12:e16706. [PMID: 38213769 PMCID: PMC10782957 DOI: 10.7717/peerj.16706] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2023] [Accepted: 11/30/2023] [Indexed: 01/13/2024]  Open
2
Tihelka E, Cai C, Giacomelli M, Lozano-Fernandez J, Rota-Stabelli O, Huang D, Engel MS, Donoghue PCJ, Pisani D. The evolution of insect biodiversity. Curr Biol 2021;31:R1299-R1311. [PMID: 34637741 DOI: 10.1016/j.cub.2021.08.057] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
3
How to Study Classification. Cladistics 2020. [DOI: 10.1017/9781139047678.017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]  Open
4
Classification. Cladistics 2020. [DOI: 10.1017/9781139047678.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]  Open
5
Systematics Association Special Volumes. Cladistics 2020. [DOI: 10.1017/9781139047678.025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]  Open
6
Relationship Diagrams. Cladistics 2020. [DOI: 10.1017/9781139047678.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]  Open
7
The Separation of Classification and Phylogenetics. Cladistics 2020. [DOI: 10.1017/9781139047678.021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]  Open
8
Beyond Classification. Cladistics 2020. [DOI: 10.1017/9781139047678.019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]  Open
9
The Interrelationships of Organisms. Cladistics 2020. [DOI: 10.1017/9781139047678.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]  Open
10
How to Study Classification. Cladistics 2020. [DOI: 10.1017/9781139047678.018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]  Open
11
Modern Artificial Methods and Raw Data. Cladistics 2020. [DOI: 10.1017/9781139047678.014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]  Open
12
Further Myths and More Misunderstandings. Cladistics 2020. [DOI: 10.1017/9781139047678.022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
13
Afterword. Cladistics 2020. [DOI: 10.1017/9781139047678.023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
14
Systematics: Exposing Myths. Cladistics 2020. [DOI: 10.1017/9781139047678.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]  Open
15
Essentialism and Typology. Cladistics 2020. [DOI: 10.1017/9781139047678.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]  Open
16
Beyond Classification: How to Study Phylogeny. Cladistics 2020. [DOI: 10.1017/9781139047678.020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]  Open
17
How to Study Classification: ‘Total Evidence’ vs. ‘Consensus’, Character Congruence vs. Taxonomic Congruence, Simultaneous Analysis vs. Partitioned Data. Cladistics 2020. [DOI: 10.1017/9781139047678.016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]  Open
18
What This Book Is About. Cladistics 2020. [DOI: 10.1017/9781139047678.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
19
How to Study Classification. Cladistics 2020. [DOI: 10.1017/9781139047678.013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]  Open
20
The Cladistic Programme. Cladistics 2020. [DOI: 10.1017/9781139047678.011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
21
Index. Cladistics 2020. [DOI: 10.1017/9781139047678.024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]  Open
22
Parameters of Classification:Ordo Ab Chao. Cladistics 2020. [DOI: 10.1017/9781139047678.012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]  Open
23
Monothetic and Polythetic Taxa. Cladistics 2020. [DOI: 10.1017/9781139047678.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]  Open
24
How to Study Classification: Consensus Techniques and General Classifications. Cladistics 2020. [DOI: 10.1017/9781139047678.015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
25
Non-taxa or the Absence of –Phyly: Paraphyly and Aphyly. Cladistics 2020. [DOI: 10.1017/9781139047678.010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
26
Introduction: Carving Nature at Its Joints, or Why Birds Are Not Dinosaurs and Men Are Not Apes. Cladistics 2020. [DOI: 10.1017/9781139047678.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]  Open
27
Preface. Cladistics 2020. [DOI: 10.1017/9781139047678.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]  Open
28
Schrago CG, Aguiar BO, Mello B. Comparative evaluation of maximum parsimony and Bayesian phylogenetic reconstruction using empirical morphological data. J Evol Biol 2018;31:1477-1484. [DOI: 10.1111/jeb.13344] [Citation(s) in RCA: 41] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2018] [Revised: 06/13/2018] [Accepted: 06/27/2018] [Indexed: 11/27/2022]
29
Sterner B, Lidgard S. Moving Past the Systematics Wars. JOURNAL OF THE HISTORY OF BIOLOGY 2018;51:31-67. [PMID: 28255641 DOI: 10.1007/s10739-017-9471-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
30
Bomfleur B, Grimm GW, McLoughlin S. The fossil Osmundales (Royal Ferns)-a phylogenetic network analysis, revised taxonomy, and evolutionary classification of anatomically preserved trunks and rhizomes. PeerJ 2017;5:e3433. [PMID: 28713650 PMCID: PMC5508817 DOI: 10.7717/peerj.3433] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2016] [Accepted: 05/17/2017] [Indexed: 12/03/2022]  Open
31
Goloboff PA, Torres A, Arias JS. Weighted parsimony outperforms other methods of phylogenetic inference under models appropriate for morphology. Cladistics 2017;34:407-437. [DOI: 10.1111/cla.12205] [Citation(s) in RCA: 205] [Impact Index Per Article: 29.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/22/2017] [Indexed: 11/28/2022]  Open
32
Molecular Evolution in Historical Perspective. J Mol Evol 2016;83:204-213. [DOI: 10.1007/s00239-016-9772-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2016] [Accepted: 11/24/2016] [Indexed: 10/20/2022]
33
Lachance MA. Paraphyly and (yeast) classification. Int J Syst Evol Microbiol 2016;66:4924-4929. [PMID: 27604464 DOI: 10.1099/ijsem.0.001474] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]  Open
34
How our view of animal phylogeny was reshaped by molecular approaches: lessons learned. ORG DIVERS EVOL 2016. [DOI: 10.1007/s13127-016-0264-8] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
35
What Salamander Biologists Have Taught Us About Evo-devo. ACTA ACUST UNITED AC 2014. [DOI: 10.1007/978-94-017-9412-1_13] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/16/2023]
36
Renner SS. From Taxonomy to Phylogenetics: Life and Work of Willi Hennig.— By Michael Schmitt. Syst Biol 2014. [DOI: 10.1093/sysbio/syu012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
37
Suárez-Díaz E. The long and winding road of molecular data in phylogenetic analysis. JOURNAL OF THE HISTORY OF BIOLOGY 2014;47:443-478. [PMID: 24213944 DOI: 10.1007/s10739-013-9373-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
38
Johnson RF, Gosliner TM. Traditional taxonomic groupings mask evolutionary history: a molecular phylogeny and new classification of the chromodorid nudibranchs. PLoS One 2012;7:e33479. [PMID: 22506002 PMCID: PMC3323602 DOI: 10.1371/journal.pone.0033479] [Citation(s) in RCA: 55] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2011] [Accepted: 02/14/2012] [Indexed: 11/21/2022]  Open
39
Developmental Characters in Phylogenetic Inference and Their Absolute Timing Information. Syst Biol 2011;60:630-44. [DOI: 10.1093/sysbio/syr024] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]  Open
40
Chen SH, Su SY, Lo CZ, Chen KH, Huang TJ, Kuo BH, Lin CY. PALM: a paralleled and integrated framework for phylogenetic inference with automatic likelihood model selectors. PLoS One 2009;4:e8116. [PMID: 19997614 PMCID: PMC2785425 DOI: 10.1371/journal.pone.0008116] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2009] [Accepted: 11/06/2009] [Indexed: 11/22/2022]  Open
41
Delaugerre C, Chaix ML, Blanche S, Warszawski J, Cornet D, Dollfus C, Schneider V, Burgard M, Faye A, Mandelbrot L, Tubiana R, Rouzioux C. Perinatal acquisition of drug-resistant HIV-1 infection: mechanisms and long-term outcome. Retrovirology 2009;6:85. [PMID: 19765313 PMCID: PMC2756278 DOI: 10.1186/1742-4690-6-85] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2009] [Accepted: 09/19/2009] [Indexed: 11/25/2022]  Open
42
Vergara-Silva F. Pattern cladistics and the 'realism-antirealism debate' in the philosophy of biology. Acta Biotheor 2009;57:269-94. [PMID: 19507040 DOI: 10.1007/s10441-009-9083-z] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2009] [Accepted: 05/15/2009] [Indexed: 10/20/2022]
43
Miklós I, Novák Á, Satija R, Lyngsø R, Hein J. Stochastic models of sequence evolution including insertion—deletion events. Stat Methods Med Res 2009;18:453-85. [DOI: 10.1177/0962280208099500] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
44
Suárez-Díaz E, Anaya-Muñoz VH. History, objectivity, and the construction of molecular phylogenies. STUDIES IN HISTORY AND PHILOSOPHY OF BIOLOGICAL AND BIOMEDICAL SCIENCES 2008;39:451-468. [PMID: 19026976 DOI: 10.1016/j.shpsc.2008.09.002] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2007] [Revised: 07/10/2008] [Indexed: 05/27/2023]
45
Milne I, Lindner D, Bayer M, Husmeier D, McGuire G, Marshall DF, Wright F. TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops. Bioinformatics 2008;25:126-7. [PMID: 18984599 PMCID: PMC2638937 DOI: 10.1093/bioinformatics/btn575] [Citation(s) in RCA: 456] [Impact Index Per Article: 28.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
46
Khan HA, Arif IA, Bahkali AH, Al Farhan AH, Al Homaidan AA. Bayesian, maximum parsimony and UPGMA models for inferring the phylogenies of antelopes using mitochondrial markers. Evol Bioinform Online 2008;4:263-70. [PMID: 19204824 PMCID: PMC2614192 DOI: 10.4137/ebo.s934] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]  Open
47
Paul D, Rastogi N, Krauss U, Schlomann M, Pandey G, Pandey J, Ghosh A, Jain RK. Diversity of 'benzenetriol dioxygenase' involved in p-nitrophenol degradation in soil bacteria. Indian J Microbiol 2008;48:279-86. [PMID: 23100721 DOI: 10.1007/s12088-008-0038-x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2007] [Accepted: 01/08/2008] [Indexed: 10/21/2022]  Open
48
Keever CC, Hart MW. Something for nothing? Reconstruction of ancestral character states in asterinid sea star development. Evol Dev 2008;10:62-73. [DOI: 10.1111/j.1525-142x.2008.00214.x] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
49
Ankel-Simons F, Rasmussen DT. Diurnality, nocturnality, and the evolution of primate visual systems. AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY 2008;Suppl 47:100-17. [PMID: 19003895 DOI: 10.1002/ajpa.20957] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
50
Buffington ML, Nylander JAA, Heraty JM. The phylogeny and evolution of Figitidae (Hymenoptera: Cynipoidea). Cladistics 2007. [DOI: 10.1111/j.1096-0031.2007.00153.x] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]  Open
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