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Huang Y, Tang Y, Liang Y, Xie Z, Wu J, Huang J, Wei S, Nie S, Jiang T. Transport and retention of n-hexadecane in cadmium-/naphthalene-contaminated calcareous soil sampled in a karst area. ENVIRONMENTAL GEOCHEMISTRY AND HEALTH 2023; 45:8881-8895. [PMID: 37358714 DOI: 10.1007/s10653-023-01664-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2022] [Accepted: 06/13/2023] [Indexed: 06/27/2023]
Abstract
Studying the transport of petroleum hydrocarbons in cadmium-/naphthalene-contaminated calcareous soils is crucial to comprehensive assessment of environmental risks and developing appropriate strategies to remediate petroleum hydrocarbons pollution in karst areas. In this study, n-hexadecane was selected as a model petroleum hydrocarbon. Batch experiments were conducted to explore the adsorption behavior of n-hexadecane on cadmium-/naphthalene-contaminated calcareous soils at various pH, and column experiments were performed to investigate the transport and retention of n-hexadecane under various flow velocity. The results showed that Freundlich model better described the adsorption behavior of n-hexadecane in all cases (R2 > 0.9). Under the condition of pH = 5, it was advantageous for soil samples to adsorb more n-hexadecane, and the maximum adsorption content followed the order of: cadmium/naphthalene-contaminated > uncontaminated soils. The transport of n-hexadecane in cadmium/naphthalene-contaminated soils at various flow velocity was well described by two kinetic sites model of Hydrus-1D with R2 > 0.9. Due to the increased electrostatic repulsion between n-hexadecane and soil particles, n-hexadecane was more easily able to breakthrough cadmium/naphthalene-contaminated soils. Compared to low flow velocity (1 mL/min), a higher concentration of n-hexadecane was determined at high flow velocity, with 67, 63, and 45% n-hexadecane in effluent from cadmium-contaminated soils, naphthalene-contaminated soils, and uncontaminated soils, respectively. These findings have important implications for the government of groundwater in calcareous soils from karst areas.
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Affiliation(s)
- Yiting Huang
- School of Civil Engineering and Architecture, Guangxi University, Nanning, 530004, China
| | - Yankui Tang
- School of Resources, Environment and Materials, Guangxi University, Nanning, 530004, China.
| | - Yi Liang
- School of Resources, Environment and Materials, Guangxi University, Nanning, 530004, China
| | - Zhenze Xie
- School of Resources, Environment and Materials, Guangxi University, Nanning, 530004, China
| | - Jipeng Wu
- School of Resources, Environment and Materials, Guangxi University, Nanning, 530004, China
| | - Jiajie Huang
- School of Resources, Environment and Materials, Guangxi University, Nanning, 530004, China
| | - Shanxiong Wei
- School of Resources, Environment and Materials, Guangxi University, Nanning, 530004, China
| | - Shaojiang Nie
- School of Resources, Environment and Materials, Guangxi University, Nanning, 530004, China
| | - Tao Jiang
- School of Resources, Environment and Materials, Guangxi University, Nanning, 530004, China
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Cui X, Cao X, Xue W, Xu L, Cui Z, Zhao R, Ni SQ. Integrative effects of microbial inoculation and amendments on improved crop safety in industrial soils co-contaminated with organic and inorganic pollutants. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 873:162202. [PMID: 36775162 DOI: 10.1016/j.scitotenv.2023.162202] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/10/2022] [Revised: 01/12/2023] [Accepted: 02/08/2023] [Indexed: 06/18/2023]
Abstract
Soils co-contaminated by organic and inorganic pollutants usually pose major ecological risks to soil ecosystems including plants. Thus, effective strategies are needed to alleviate the phytotoxicity caused by such co-contamination. In this study, microbial agents (a mixture of Bacillus subtilis, Sphingobacterium multivorum, and a commercial microbial product named OBT) and soil amendments (β-cyclodextrin, rice husk, biochar, calcium magnesium phosphate fertilizer, and organic fertilizer) were evaluated to determine their applicability in alleviating toxicity to crops (maize and soybean) posed by polycyclic aromatic hydrocarbon (PAHs) and potentially toxic metals co-contaminated soils. The results showed that peroxidase, catalase, and superoxide dismutase activity levels in maize or soybean grown in severely or mildly contaminated soils were significantly enhanced by the integrative effects of amendments and microbial agents, compared with those in single plant treatments. The removal rates of Zn, Pb, and Cd in severely contaminated soils were 49 %, 47 %, and 51 % and 46 %, 45 %, and 48 %, for soybean and maize, respectively. The total contents of Cd, Pb, Zn, and PAHs in soil decreased by day 90. Soil organic matter content, levels of nutrient elements, and enzyme activity (catalase, urease, and dehydrogenase) increased after the amendments and application of microbial agents. Moreover, the amendments and microbial agents also increased the diversity and distribution of bacterial species in the soil. These results suggest that the amendments and microbial agents were beneficial for pollutant purification, improving the soil environment and enhancing both plant resistance to pollutants and immune systems of plants.
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Affiliation(s)
- Xiaowei Cui
- School of Municipal & Environmental Engineering, Shandong Jianzhu University, Jinan 250101, PR China
| | - Xiufeng Cao
- School of Municipal & Environmental Engineering, Shandong Jianzhu University, Jinan 250101, PR China; School of Environmental Science and Engineering, Shandong University, Qingdao 266237, PR China.
| | - Wenxiu Xue
- School of Environmental Science and Engineering, Shandong University, Qingdao 266237, PR China
| | - Lei Xu
- School of Environmental Science and Engineering, Shandong University, Qingdao 266237, PR China
| | - Zhaojie Cui
- School of Environmental Science and Engineering, Shandong University, Qingdao 266237, PR China
| | - Rui Zhao
- School of Environmental Science and Engineering, Shandong University, Qingdao 266237, PR China
| | - Shou-Qing Ni
- School of Environmental Science and Engineering, Shandong University, Qingdao 266237, PR China
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3
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Masyagina OV, Matvienko AI, Ponomareva TV, Grodnitskaya ID, Sideleva EV, Kadutskiy VK, Prudnikova SV, Bezbido VS, Kudryavtseva KA, Evgrafova SY. Soil contamination by diesel fuel destabilizes the soil microbial pools: Insights from permafrost soil incubations. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2023; 323:121269. [PMID: 36780979 DOI: 10.1016/j.envpol.2023.121269] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2022] [Revised: 02/09/2023] [Accepted: 02/10/2023] [Indexed: 06/18/2023]
Abstract
Arctic contamination by diesel fuel (DF) is of great concern because of the uncertain feedback of permafrost carbon (C) and soil microbiota to DF in the context of climate change in high latitudes. We conducted a laboratory incubation experiment with a gradient of DF addition ratios to examine the responses of the soil microbiota of the typical permafrost soils in the tundra ecosystems of the Norilsk region (Siberia). The study revealed initial heterogeneity in the microbial activity of the studied soils (Histic Gleyic Cryosols (CR-hi,gl), Turbic Cryosols (CR-tu), Turbic Spodic Folic Cryosols (CR-tu,sd,fo), Gleyic Fluvisols (FL-gl)). We applied the two-pool model for evaluation of the effect of DF on the proportions of C pools and revealed significant differences between soil types in the fast and slow C pools in response to DF addition. The results showed that DF addition treatments had varying effects on the fast and slow C pools, microbial activity, and microbial community structure in the studied soils. For minor exceptions, DF dramatically accelerated C loss from the slow C pool in all soil types. We assume that differences in C pool and microbiota responses to DF addition were caused by soil texture and changes in microbial community structure. We isolated Serratia proteamaculans, S. liquefaciens, S. plymuthica, Rhodococcus erythropolis, Pseudomonas antarctica, P. libanensis, P. brassicacearum, and P. chlororaphis from the DF-polluted soils. These species are recommended for bioremediation to mitigate the DF contamination of permafrost soils, especially regarding climate change and the sustainable well-being of Arctic ecosystems.
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Affiliation(s)
- Oxana V Masyagina
- Sukachev Institute of Forest SB RAS, Federal Research Center "Krasnoyarsk Science Center SB RAS", 50/28 Akademgorodok St., 660036, Krasnoyarsk, Russian Federation.
| | - Anastasia I Matvienko
- Sukachev Institute of Forest SB RAS, Federal Research Center "Krasnoyarsk Science Center SB RAS", 50/28 Akademgorodok St., 660036, Krasnoyarsk, Russian Federation
| | - Tatiana V Ponomareva
- Sukachev Institute of Forest SB RAS, Federal Research Center "Krasnoyarsk Science Center SB RAS", 50/28 Akademgorodok St., 660036, Krasnoyarsk, Russian Federation
| | - Irina D Grodnitskaya
- Sukachev Institute of Forest SB RAS, Federal Research Center "Krasnoyarsk Science Center SB RAS", 50/28 Akademgorodok St., 660036, Krasnoyarsk, Russian Federation; Siberian Federal University, 660041, Krasnoyarsk, Russian Federation
| | | | - Valeriy K Kadutskiy
- Sukachev Institute of Forest SB RAS, Federal Research Center "Krasnoyarsk Science Center SB RAS", 50/28 Akademgorodok St., 660036, Krasnoyarsk, Russian Federation
| | | | - Viktoria S Bezbido
- Krasnoyarsk Regional Clinical Сentre of Motherhood and Сhildhood Care, 660074, Krasnoyarsk, Russian Federation
| | - Kristina A Kudryavtseva
- Krasnoyarsk Regional Clinical Сentre of Motherhood and Сhildhood Care, 660074, Krasnoyarsk, Russian Federation
| | - Svetlana Y Evgrafova
- Sukachev Institute of Forest SB RAS, Federal Research Center "Krasnoyarsk Science Center SB RAS", 50/28 Akademgorodok St., 660036, Krasnoyarsk, Russian Federation; Siberian Federal University, 660041, Krasnoyarsk, Russian Federation; Melnikov Permafrost Institute of the Siberian Branch of the Russian Academy of Science, 677010, Yakutsk, Russian Federation
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4
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Bhanse P, Kumar M, Singh L, Awasthi MK, Qureshi A. Role of plant growth-promoting rhizobacteria in boosting the phytoremediation of stressed soils: Opportunities, challenges, and prospects. CHEMOSPHERE 2022; 303:134954. [PMID: 35595111 DOI: 10.1016/j.chemosphere.2022.134954] [Citation(s) in RCA: 39] [Impact Index Per Article: 19.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2022] [Revised: 04/30/2022] [Accepted: 05/10/2022] [Indexed: 05/02/2023]
Abstract
Soil is considered as a vital natural resource equivalent to air and water which supports growth of the plants and provides habitats to microorganisms. Changes in soil properties, productivity, and, inevitably contamination/stress are the result of urbanisation, industrialization, and long-term use of synthetic fertiliser. Therefore, in the recent scenario, reclamation of contaminated/stressed soils has become a potential challenge. Several customized, such as, physical, chemical, and biological technologies have been deployed so far to restore contaminated land. Among them, microbial-assisted phytoremediation is considered as an economical and greener approach. In recent decades, soil microbes have successfully been used to improve plants' ability to tolerate biotic and abiotic stress and strengthen their phytoremediation capacity. Therefore, in this context, the current review work critically explored the microbial assisted phytoremediation mechanisms to restore different types of stressed soil. The role of plant growth-promoting rhizobacteria (PGPR) and their potential mechanisms that foster plants' growth and also enhance phytoremediation capacity are focussed. Finally, this review has emphasized on the application of advanced tools and techniques to effectively characterize potent soil microbial communities and their significance in boosting the phytoremediation process of stressed soils along with prospects for future research.
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Affiliation(s)
- Poonam Bhanse
- Environmental Biotechnology and Genomics Division, CSIR-National Environmental Engineering Research Institute (CSIR-NEERI), Nehru Marg, Nagpur, 440020, Maharashtra, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Manish Kumar
- Environmental Biotechnology and Genomics Division, CSIR-National Environmental Engineering Research Institute (CSIR-NEERI), Nehru Marg, Nagpur, 440020, Maharashtra, India
| | - Lal Singh
- Environmental Biotechnology and Genomics Division, CSIR-National Environmental Engineering Research Institute (CSIR-NEERI), Nehru Marg, Nagpur, 440020, Maharashtra, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Mukesh Kumar Awasthi
- College of Natural Resources and Environment, Northwest A&F University, Yangling, 712100, Shaanxi Province, PR China.
| | - Asifa Qureshi
- Environmental Biotechnology and Genomics Division, CSIR-National Environmental Engineering Research Institute (CSIR-NEERI), Nehru Marg, Nagpur, 440020, Maharashtra, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India.
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5
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Bharti M, Nagar S, Khurana H, Negi RK. Metagenomic insights to understand the role of polluted river Yamuna in shaping the gut microbial communities of two invasive fish species. Arch Microbiol 2022; 204:509. [PMID: 35859219 DOI: 10.1007/s00203-022-03127-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2022] [Revised: 07/05/2022] [Accepted: 07/06/2022] [Indexed: 11/26/2022]
Abstract
The gastrointestinal microbial community plays a crucial role in host health, immunity, protection, development and provides nutrients to the host. The rising human-induced pollution and heavy metal contamination in all aquatic systems globally has led us to explore the gut microbial diversity of two exotic invasive fish Cyprinus carpio (Linnaeus, 1858) and Oreochromis niloticus (Linnaeus,1857) from river Yamuna, India. These fishes are aquatic bioindicators with high demographic resilience. Exploring these associations would pave the way for addressing problems that inhabitant fishes are facing due to the increasing pollution load in the River Yamuna. Based on 16S rRNA gene amplicon sequencing, our results deliver comparative information on the gut microbiome of these fishes and highlight connotations between the microbiome of gut and water samples. The gut of C. carpio and O. niloticus was dominated by phyla Proteobacteria whereas Bacteroidetes dominated the water sample. Microbial communities showed predicted roles such as pathogenicity (Escherichia-Shigella, Aeromonas veronii, Vibrio cholerae, Streptococcus iniae, Flavobacterium columnare, Klebsiella pneumoniae, Mycobacterium sp.), probiotic applications (Bacillus velezensis, Lactobacillus plantarum, Enterococcus faecalis, Bifidobacterium longum, Lactococcus lactis, Leuconostoc falkenbergense) and involvement in sewage and organic matter decomposition (Nitrosomonas sp., Methanosaeta harundinacea, Dechloromonas agitata, Thauera humireducens, Zoogloea ramigera). Heavy metal degrading members (Leucobacter chromiireducens, Pseudomonas fluorescens, P. aeruginosa, Klebsiella pneumoniae, and Micrococcus luteus) were detected in gut microbiome samples thus supporting the notion that fish shapes its gut microbiota with changing ecology. Functional profiling showed that microbial communities are specialized in metabolic functions thus reflecting the dietary profile of these invasive fishes.
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Affiliation(s)
- Meghali Bharti
- Fish Molecular Biology Laboratory, Department of Zoology, University of Delhi, Delhi, 110007, India
| | - Shekhar Nagar
- Fish Molecular Biology Laboratory, Department of Zoology, University of Delhi, Delhi, 110007, India
- Deshbandhu College, University of Delhi, Delhi, India
| | - Himani Khurana
- Fish Molecular Biology Laboratory, Department of Zoology, University of Delhi, Delhi, 110007, India
| | - Ram Krishan Negi
- Fish Molecular Biology Laboratory, Department of Zoology, University of Delhi, Delhi, 110007, India.
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6
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Fu J, Chen J, Wang Y, Meng T, Yue L, Luo D, Wang X. Promoting effect of the recombinant resuscitation promoting factors-2 of Rhodococcus erythropolis on petroleum degradation and cultivable bacterial diversities of the oil-contaminated soils. Lett Appl Microbiol 2021; 74:462-469. [PMID: 34878651 DOI: 10.1111/lam.13626] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2021] [Revised: 11/27/2021] [Accepted: 11/29/2021] [Indexed: 11/27/2022]
Abstract
Resuscitation-promoting factors (Rpfs) belong to peptidoglycan hydrolases, which participate in recovery of dormant cells and promoting bacteria growth. In this study, the resuscitation promoting factor rpf2 gene of Rhodococcus erythropolis KB1 was expressed in Escherichia coli and purified by Ni2+ affinity chromatography. The purified recombinant fusion protein Rpf2 showed a closely 50 kDa band on sodium dodecyl sulphate polyacrylamide gel electrophoresis. The protein showed muralytic activity, with a specific activity of 1503 ± 123 U mg-1 when determined with 4-methylumbelliferyl-β-d-N, N',N″-triacetotri-ylchitoside as substrate. It also showed protease activity when measured with azocasein as substrate, with a specific activity of 1528 ± 411 U mg-1 . The addition of the recombinant Rpf2 protein significantly increased petroleum degradation efficiency of the indigenous micro-organisms and the petroleum degradation rates increased from 30·86 to 43·45%, 45·20 and 49·23% in the treatment groups. The recombinant protein also increased the petroleum-degrading bacterial diversities enriched from the contaminated soils. The cultivable bacterial flora of the treatment groups supplemented with different concentrations of Rpf2 increased from 82 genera in 9 phyla to 116 genera in 16 phyla and 138 genera in 16 phyla respectively. Thirteen extra petroleum-degrading bacteria strains were isolated from the petroleum-contaminated soils in the groups containing the recombinant Rpf2.
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Affiliation(s)
- J Fu
- School of Petrochemical Engineering, Lanzhou University of Technology, Lanzhou, China
| | - J Chen
- School of Petrochemical Engineering, Lanzhou University of Technology, Lanzhou, China
| | - Y Wang
- School of Life Science and Engineering, Lanzhou University of Technology, Lanzhou, China
| | - T Meng
- Gansu Academy for Water Conservancy, Lanzhou, China
| | - L Yue
- School of Petrochemical Engineering, Lanzhou University of Technology, Lanzhou, China
| | - D Luo
- School of Petrochemical Engineering, Lanzhou University of Technology, Lanzhou, China
| | - X Wang
- School of Petrochemical Engineering, Lanzhou University of Technology, Lanzhou, China
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Yang KM, Poolpak T, Pokethitiyook P, Kruatrachue M, Saengwilai P. Responses of oil degrader enzyme activities, metabolism and degradation kinetics to bean root exudates during rhizoremediation of crude oil contaminated soil. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2021; 24:101-109. [PMID: 34378998 DOI: 10.1080/15226514.2021.1926912] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
During rhizoremediation process, plant roots secrete the specific exudates which enhance or stimulate growth and activity of microbial community in the rhizosphere resulting in effective degradation of pollutants. The present study characterized cowpea (CP) and mung bean (MB) root exudates and examined their influences on the degradation of total petroleum hydrocarbons (TPHs) and polycyclic aromatic hydrocarbons (PAHs) by the two oil degraders Micrococcus luteus WN01 and Bacillus cereus W2301. The effects of root exudates on soil microbial population dynamic and their enzymes dehydrogenase (DHA), and catechol 2,3 dioxygenase (C23O) activities were assessed. Both root exudates enhanced the degradation by both oil degraders. Cowpea root exudates maximized the removal of TPHs and PAHs by M. luteus WN01. Both bacterial population and DHA increased significantly in the presence of both root exudates. However, the C23O activities were significantly higher in WN01 treated. No significant influence of root exudates was observed on the C23O activities of W2301 treated. By using gas chromatography -mass spectroscopy, the dominant compounds found in cowpea and mung bean root exudates were 4-methoxy-cinnamic acid and terephthalic acid. Found in lower amount were propionic, malonic acid, and citric acid which were associated with enhanced PAHs desorption from soil and subsequent degradation. Novelty statement This is the first study to characterize the low molecular weight organic acids from root exudates of cowpea and mung bean and their influences on hydrocarbon desorption and hence enhancing the biodegradation process. The findings of the present study will greatly contribute to a better understanding of plant-microbe interaction in total petroleum hydrocarbons contaminated soil.
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Affiliation(s)
- Kwang Mo Yang
- Department of Biology, Faculty of Science, Mahidol University, Bangkok, Thailand
- Center of Excellence on Environmental Health and Toxicology (EHT), Commission of Higher Education, Ministry of Education, Bangkok, Thailand
| | - Toemthip Poolpak
- Department of Biology, Faculty of Science, Mahidol University, Bangkok, Thailand
- Center of Excellence on Environmental Health and Toxicology (EHT), Commission of Higher Education, Ministry of Education, Bangkok, Thailand
| | - Prayad Pokethitiyook
- Department of Biology, Faculty of Science, Mahidol University, Bangkok, Thailand
- Center of Excellence on Environmental Health and Toxicology (EHT), Commission of Higher Education, Ministry of Education, Bangkok, Thailand
| | - Maleeya Kruatrachue
- Department of Biology, Faculty of Science, Mahidol University, Bangkok, Thailand
- Center of Excellence on Environmental Health and Toxicology (EHT), Commission of Higher Education, Ministry of Education, Bangkok, Thailand
| | - Patompong Saengwilai
- Department of Biology, Faculty of Science, Mahidol University, Bangkok, Thailand
- Center of Excellence on Environmental Health and Toxicology (EHT), Commission of Higher Education, Ministry of Education, Bangkok, Thailand
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8
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Li Y, Sun ZZ, Rong JC, Xie BB. Comparative genomics reveals broad genetic diversity, extensive recombination and nascent ecological adaptation in Micrococcus luteus. BMC Genomics 2021; 22:124. [PMID: 33602135 PMCID: PMC7890812 DOI: 10.1186/s12864-021-07432-5] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2020] [Accepted: 02/08/2021] [Indexed: 01/21/2023] Open
Abstract
Background Micrococcus luteus is a group of actinobacteria that is widely used in biotechnology and is being thought as an emerging nosocomial pathogen. With one of the smallest genomes of free-living actinobacteria, it is found in a wide range of environments, but intraspecies genetic diversity and adaptation strategies to various environments remain unclear. Here, comparative genomics, phylogenomics, and genome-wide association studies were used to investigate the genomic diversity, evolutionary history, and the potential ecological differentiation of the species. Results High-quality genomes of 66 M. luteus strains were downloaded from the NCBI GenBank database and core and pan-genome analysis revealed a considerable intraspecies heterogeneity. Phylogenomic analysis, gene content comparison, and average nucleotide identity calculation consistently indicated that the species has diverged into three well-differentiated clades. Population structure analysis further suggested the existence of an unknown ancestor or the fourth, yet unsampled, clade. Reconstruction of gene gain/loss events along the evolutionary history revealed both early events that contributed to the inter-clade divergence and recent events leading to the intra-clade diversity. We also found convincing evidence that recombination has played a key role in the evolutionary process of the species, with upto two-thirds of the core genes having been affected by recombination. Furthermore, distribution of mammal-associated strains (including pathogens) on the phylogenetic tree suggested that the last common ancestor had a free-living lifestyle, and a few recently diverged lineages have developed a mammal-associated lifestyle separately. Consistently, genome-wide association analysis revealed that mammal-associated strains from different lineages shared genes functionally relevant to the host-associated lifestyle, indicating a recent ecological adaption to the new host-associated habitats. Conclusions These results revealed high intraspecies genomic diversity of M. luteus and highlighted that gene gain/loss events and extensive recombination events played key roles in the genome evolution. Our study also indicated that, as a free-living species, some lineages have recently developed or are developing a mammal-associated lifestyle. This study provides insights into the mechanisms that drive the genome evolution and adaption to various environments of a bacterial species. Supplementary Information The online version contains supplementary material available at 10.1186/s12864-021-07432-5.
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Affiliation(s)
- Yisong Li
- Microbial Technology Institute and State Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China
| | - Zhong-Zhi Sun
- Microbial Technology Institute and State Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China
| | - Jin-Cheng Rong
- Microbial Technology Institute and State Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China
| | - Bin-Bin Xie
- Microbial Technology Institute and State Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China.
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9
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Zhang C, Tao Y, Li S, Ke T, Wang P, Wei S, Chen L. Bioremediation of cadmium-trichlorfon co-contaminated soil by Indian mustard (Brassica juncea) associated with the trichlorfon-degrading microbe Aspergillus sydowii: Related physiological responses and soil enzyme activities. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2020; 188:109756. [PMID: 31711776 DOI: 10.1016/j.ecoenv.2019.109756] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2019] [Revised: 09/23/2019] [Accepted: 10/01/2019] [Indexed: 05/27/2023]
Abstract
Soil co-contaminated with heavy metals and organics is often difficult to remediate. In this study, pot experiments were conducted to investigate the concurrent removal of cadmium (Cd, two levels: CdL [10 mg kg-1] and CdH [50 mg kg-1]) and trichlorfon (TCF, 100 mg kg-1) from co-contaminated soil by comparing the following remediation methods: natural remediation (NR), soil inoculated with Aspergillus sydowii (AS), soil planted with Brassica juncea (BJ), and soil planted with B. juncea and inoculated with A. sydowii (BJ-AS). The physiological responses of B. juncea and soil enzyme activities after remediation were also studied. B. juncea grew well in co-contaminated soil at both Cd levels. The biomass and chlorophyll content of B. juncea in CdH soil were lower than those in CdL soil, whereas the malondialdehyde content and activities of catalase, peroxidase and superoxide dismutase of B. juncea in CdH soil were higher than those in CdL soil. Cd accumulation in B. juncea was high in CdH soil, whereas high Cd removal efficiency was observed in CdL soil. TCF could be thoroughly degraded within 35 days in NR at both Cd-level soils. AS, BJ and BJ-AS promoted TCF degradation and enhanced the activities of catalase, urease, sucrase and alkaline phosphatase in soil compared with the NR. BJ-AS showed the highest phytoextraction ratio (3.32% in CdL and 1.34% in CdH soil) and TCF degradation rate (half-life of 2.18 and 2.37 days in CdL and CdH soil, respectively). These results demonstrate that BJ-AS could effectively remove Cd and TCF from soil and is thus a feasible technology for the bioremediation of these co-contaminated soil.
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Affiliation(s)
- Chao Zhang
- College of Resource & Environmental Sciences, Hubei Key Laboratory of Biomass-Resources Chemistry and Environmental Biotechnology, Hubei Research Center of Environment Remediation Technology, Wuhan University, Wuhan, 430079, China
| | - Yue Tao
- College of Resource & Environmental Sciences, Hubei Key Laboratory of Biomass-Resources Chemistry and Environmental Biotechnology, Hubei Research Center of Environment Remediation Technology, Wuhan University, Wuhan, 430079, China
| | - Shuangxi Li
- College of Resource & Environmental Sciences, Hubei Key Laboratory of Biomass-Resources Chemistry and Environmental Biotechnology, Hubei Research Center of Environment Remediation Technology, Wuhan University, Wuhan, 430079, China
| | - Tan Ke
- College of Resource & Environmental Sciences, Hubei Key Laboratory of Biomass-Resources Chemistry and Environmental Biotechnology, Hubei Research Center of Environment Remediation Technology, Wuhan University, Wuhan, 430079, China
| | - Panpan Wang
- College of Resource & Environmental Sciences, Hubei Key Laboratory of Biomass-Resources Chemistry and Environmental Biotechnology, Hubei Research Center of Environment Remediation Technology, Wuhan University, Wuhan, 430079, China
| | - Sijie Wei
- College of Resource & Environmental Sciences, Hubei Key Laboratory of Biomass-Resources Chemistry and Environmental Biotechnology, Hubei Research Center of Environment Remediation Technology, Wuhan University, Wuhan, 430079, China
| | - Lanzhou Chen
- College of Resource & Environmental Sciences, Hubei Key Laboratory of Biomass-Resources Chemistry and Environmental Biotechnology, Hubei Research Center of Environment Remediation Technology, Wuhan University, Wuhan, 430079, China.
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Jampasri K, Pokethitiyook P, Poolpak T, Kruatrachue M, Ounjai P, Kumsopa A. Bacteria-assisted phytoremediation of fuel oil and lead co-contaminated soil in the salt-stressed condition by chromolaena odorata and Micrococcus luteus. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2019; 22:322-333. [PMID: 31505941 DOI: 10.1080/15226514.2019.1663482] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Bioremediation of lead-petroleum co-contaminated soil under salt-stressed condition has been investigated. In this study, the co-contaminated soil (780 mg kg-1 Pb and 27,000 mg kg-1 TPHs) under the high salinity (EC 7.79 ds m-1) was used as a model soil to be remediated by Chromolaena odorata inoculated with Micrococcus luteus. The results showed that salt stress caused a marked reduction in dry biomass and stem height, and high accumulation of proline. The presence of salt did not affect the total amount of chlorophyll in plant tissues. No toxicity symptoms were evident from plant morphology after three months of exposure. Drastic differences in the accumulation patterns of Pb in C. odorata grown on saline and non-saline soils were observed and indicated that salinity negatively affected Pb uptake and accumulation. A high rate of degradation of TPHs was observed in non-saline soils with or without bacterial inoculation. Salinity stress showed no significant different in the proportion of TPH degradation with added or non-added M. luteus. The tolerance of C. odorata and M. luteus to moderate concentrations of Pb and fuel oil made them very good candidates for the use in bacteria-assisted phytoremediation of lead-fuel oil co-contaminated soils under the mild saline soils.
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Affiliation(s)
- Kongkeat Jampasri
- Department of Biology, Faculty of Science, Mahidol University, Bangkok, Thailand
- Center of Excellence on Environmental Health and Toxicology (EHT), Ministry of Education, Bangkok, Thailand
| | - Prayad Pokethitiyook
- Department of Biology, Faculty of Science, Mahidol University, Bangkok, Thailand
- Center of Excellence on Environmental Health and Toxicology (EHT), Ministry of Education, Bangkok, Thailand
| | - Toemthip Poolpak
- Department of Biology, Faculty of Science, Mahidol University, Bangkok, Thailand
| | - Maleeya Kruatrachue
- Department of Biology, Faculty of Science, Mahidol University, Bangkok, Thailand
| | - Puey Ounjai
- Department of Biology, Faculty of Science, Mahidol University, Bangkok, Thailand
| | - Acharaporn Kumsopa
- Faculty of Environment and Resource Studies, Mahidol University, Nakhonpathom, Thailand
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Fikirdeşici Ergen Ş, Üçüncü Tunca E. Nanotoxicity modelling and removal efficiencies of ZnONP. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2018; 20:16-26. [PMID: 28436678 DOI: 10.1080/15226514.2017.1319324] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
In this paper the aim is to investigate the toxic effect of zinc oxide nanoparticles (ZnONPs) and is to analyze the removal of ZnONP in aqueous medium by the consortium consisted of Daphnia magna and Lemna minor. Three separate test groups are formed: L. minor ([Formula: see text]), D. magna ([Formula: see text]), and L. minor + D. magna ([Formula: see text]) and all these test groups are exposed to three different nanoparticle concentrations ([Formula: see text]). Time-dependent, concentration-dependent, and group-dependent removal efficiencies are statistically compared by non-parametric Mann-Whitney U test and statistically significant differences are observed. The optimum removal values are observed at the highest concentration [Formula: see text] for [Formula: see text], [Formula: see text] for [Formula: see text]and [Formula: see text] for [Formula: see text] and realized at [Formula: see text] for all test groups [Formula: see text]. There is no statistically significant differences in removal at low concentrations [Formula: see text] in terms of groups but [Formula: see text] test groups are more efficient than [Formula: see text] test groups in removal of ZnONP, at [Formula: see text] concentration. Regression analysis is also performed for all prediction models. Different models are tested and it is seen that cubic models show the highest predicted values (R2). In toxicity models, R2 values are obtained at (0.892, 0.997) interval. A simple solution-phase method is used to synthesize ZnO nanoparticles. Dynamic Light Scattering and X-Ray Diffraction (XRD) are used to detect the particle size of synthesized ZnO nanoparticles.
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Affiliation(s)
| | - Esra Üçüncü Tunca
- b Faculty of Marine Sciences, Ordu University , Fatsa , Ordu , Turkey
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