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Gao B, Rojas Chavez AA, Malkawi WI, Keefe DW, Smith R, Haim H, Salem AK, Toor F. Sensitive detection of SARS-CoV-2 spike protein using vertically-oriented silicon nanowire array-based biosensor. SENSING AND BIO-SENSING RESEARCH 2022; 36:100487. [PMID: 35340912 PMCID: PMC8937609 DOI: 10.1016/j.sbsr.2022.100487] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/24/2021] [Revised: 02/23/2022] [Accepted: 03/18/2022] [Indexed: 11/06/2022] Open
Abstract
The COVID-19 pandemic has caused tremendous damage to the world. In order to quickly and accurately diagnose the virus and contain the spread, there is a need for rapid, sensitive, accurate, and cost-effective SARS-CoV-2 biosensors. In this paper, we report on a novel biosensor based on angiotensin converting enzyme 2 (ACE-2)-conjugated vertically-oriented silicon nanowire (vSiNW) arrays that can detect the SARS-CoV-2 spike protein with high sensitivity and selectivity relative to negative controls. First, we demonstrate the efficacy of using ACE-2 receptor to detect the SARS-CoV-2 spike protein via a capture assay test, which confirms high specificity of ACE-2 against the mock protein, and high affinity between the spike and ACE-2. We then report on results for ACE-2-conjugated vSiNW arrays where the biosensor device architecture is based on a p-n junction transducer. We confirm via analytical modeling that the transduction mechanism of the biosensor involves induced surface charge depletion of the vSiNWs due to negative electrostatic surface potential induced by the spike protein after binding with ACE-2. This vSiNW surface charge modulation is measured via current-voltage characteristics of the functionalized biosensor. Calibrated concentration dependent electrical response of the vSiNW sensor confirms the limit-of-detection for virus spike concentration of 100 ng/ml (or 575 pM). The vSiNW sensor also exhibits highly specific response to the spike protein with respect to negative controls, offering a promising point-of-care detection method for SARS-CoV-2.
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Maeda T, Kanamori R, Choi YJ, Taki M, Noda T, Sawada K, Takahashi K. Bio-Interface on Freestanding Nanosheet of Microelectromechanical System Optical Interferometric Immunosensor for Label-Free Attomolar Prostate Cancer Marker Detection. SENSORS 2022; 22:s22041356. [PMID: 35214266 PMCID: PMC8963056 DOI: 10.3390/s22041356] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/07/2022] [Revised: 01/29/2022] [Accepted: 02/06/2022] [Indexed: 11/24/2022]
Abstract
Various biosensors that are based on microfabrication technology have been developed as point-of-care testing devices for disease screening. The Fabry–Pérot interferometric (FPI) surface-stress sensor was developed to improve detection sensitivity by performing label-free biomarker detection as a nanomechanical deflection of a freestanding membrane to adsorb the molecules. However, chemically functionalizing the freestanding nanosheet with excellent stress sensitivity for selective molecular detection may cause the surface chemical reaction to deteriorate the nanosheet quality. In this study, we developed a minimally invasive chemical functionalization technique to create a biosolid interface on the freestanding nanosheet of a microelectromechanical system optical interferometric surface-stress immunosensor. For receptor immobilization, glutaraldehyde cross-linking on the surface of the amino-functionalized parylene membrane reduced the shape variation of the freestanding nanosheet to 1/5–1/10 of the previous study and achieved a yield of 95%. In addition, the FPI surface-stress sensor demonstrated molecular selectivity and concentration dependence for prostate-specific antigen with a dynamic range of concentrations from 100 ag/mL to 1 µg/mL. In addition, the minimum limit of detection of the proposed sensor was 2,000,000 times lower than that of the conventional nanomechanical cantilevers.
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Affiliation(s)
- Tomoya Maeda
- Department of Electrical and Electronic Information Engineering, Toyohashi University of Technology, Toyohashi 441-8580, Japan; (T.M.); (R.K.); (Y.-J.C.); (M.T.); (T.N.); (K.S.)
| | - Ryoto Kanamori
- Department of Electrical and Electronic Information Engineering, Toyohashi University of Technology, Toyohashi 441-8580, Japan; (T.M.); (R.K.); (Y.-J.C.); (M.T.); (T.N.); (K.S.)
| | - Yong-Joon Choi
- Department of Electrical and Electronic Information Engineering, Toyohashi University of Technology, Toyohashi 441-8580, Japan; (T.M.); (R.K.); (Y.-J.C.); (M.T.); (T.N.); (K.S.)
| | - Miki Taki
- Department of Electrical and Electronic Information Engineering, Toyohashi University of Technology, Toyohashi 441-8580, Japan; (T.M.); (R.K.); (Y.-J.C.); (M.T.); (T.N.); (K.S.)
| | - Toshihiko Noda
- Department of Electrical and Electronic Information Engineering, Toyohashi University of Technology, Toyohashi 441-8580, Japan; (T.M.); (R.K.); (Y.-J.C.); (M.T.); (T.N.); (K.S.)
- Electronics Inspired-Interdisciplinary Research Institute (EIIRIS), Toyohashi University of Technology, Toyohashi 441-8580, Japan
| | - Kazuaki Sawada
- Department of Electrical and Electronic Information Engineering, Toyohashi University of Technology, Toyohashi 441-8580, Japan; (T.M.); (R.K.); (Y.-J.C.); (M.T.); (T.N.); (K.S.)
- Electronics Inspired-Interdisciplinary Research Institute (EIIRIS), Toyohashi University of Technology, Toyohashi 441-8580, Japan
| | - Kazuhiro Takahashi
- Department of Electrical and Electronic Information Engineering, Toyohashi University of Technology, Toyohashi 441-8580, Japan; (T.M.); (R.K.); (Y.-J.C.); (M.T.); (T.N.); (K.S.)
- Correspondence: ; Tel.: +81-532-44-6740
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Oka Y, Ushiba S, Miyakawa N, Nishio M, Ono T, Kanai Y, Watanabe Y, Tani S, Kimura M, Matsumoto K. Ionic strength-sensitive and pH-insensitive interactions between C-reactive protein (CRP) and an anti-CRP antibody. Biophys Physicobiol 2022; 19:e190003. [PMID: 35958119 PMCID: PMC8926308 DOI: 10.2142/biophysico.bppb-v19.0003] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Accepted: 02/04/2022] [Indexed: 12/01/2022] Open
Abstract
C-reactive protein (CRP) is an important biomarker of infection and inflammation, as CRP is one of the most prominent acute-phase proteins. CRP is usually detected using anti-CRP antibodies (Abs), where the intermolecular interactions between CRP and the anti-CRP Ab are largely affected by the pH and ionic strength of environmental solutions. Therefore, it is important to understand the environmental effects of CRP–anti-CRP Ab interactions when designing highly sensitive biosensors. Here, we investigated the efficiency of fluorescently labeled CRP–anti-CRP monoclonal antibody (mAb) interactions at different pHs and ionic strengths. Our results indicate that the affinity was insensitive to pH changes in the range of 5.9 to 8.1, while it was significantly sensitive to ionic strength changes. The binding affinity decreased by 55% at an ionic strength of 1.6 mM, when compared to that under a physiological condition (~150 mM). Based on the isoelectric focusing results, both the labeled CRP and anti-CRP mAb were negatively charged in the studied pH range, which rendered the system insensitive to pH changes, but sensitive to ionic strength changes. The decreased ionic strength led to a significant enhancement of the repulsive force between CRP and the anti-CRP mAb. Although the versality of the findings is not fully studied yet, the results provide insights into designing highly sensitive CRP sensors, especially field-effect transistor-based sensors.
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Affiliation(s)
| | | | | | | | | | | | - Yohei Watanabe
- Department of Infectious Diseases, Graduate School of Medical Science, Kyoto Prefectural University of Medicine
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Ma J, Du M, Wang C, Xie X, Wang H, Li T, Chen S, Zhang L, Mao S, Zhou X, Wu M. Rapid and Sensitive Detection of Mycobacterium tuberculosis by an Enhanced Nanobiosensor. ACS Sens 2021; 6:3367-3376. [PMID: 34470206 DOI: 10.1021/acssensors.1c01227] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Tuberculosis (TB) mostly spreads from person to person through Mycobacterium tuberculosis (MTB). However, the majority of conventional detection methods for MTB cannot satisfy the requirements for actual TB detection. As one of the most promising powerful platforms, a silicon nanowire field-effect transistor (SiNW-FET) biosensor shows good prospect in TB detection. In this study, an enhanced SiNW-FET biosensor was developed for the rapid and sensitive detection of MTB. The surface functional parameters of the biosensor were explored and optimized. The SiNW-FET biosensor has good sensitivity with a detection limit of 0.01 fg/mL toward protein. The current change value shows a linear upward trend with the increase in protein concentration in the range of 1 fg/mL to 100 μg/mL. One whole test cycle can be accomplished within only 30 s. More importantly, a good distinction was realized in the sputum without pretreatment between normal people and TB patients, which greatly shortened the TB detection time (only 2-5 min, considering the dilution of sputum). Compared with other methods, the SiNW-FET biosensor can detect MTB with a remarkably broad dynamic linear range in a shorter time.
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Affiliation(s)
- Jinbiao Ma
- School of Environmental Science and Engineering, Tianjin University, Tianjin 300072, PR China
- Tianjin Key Lab of Indoor Air Environmental Quality Control, Tianjin 300072, PR China
| | - Manman Du
- School of Environmental Science and Engineering, Tianjin University, Tianjin 300072, PR China
- Tianjin Key Lab of Indoor Air Environmental Quality Control, Tianjin 300072, PR China
| | - Can Wang
- School of Environmental Science and Engineering, Tianjin University, Tianjin 300072, PR China
- Tianjin Key Lab of Indoor Air Environmental Quality Control, Tianjin 300072, PR China
| | - Xinwu Xie
- Institute of Medical Support Technology, Academy of Military Science, Tianjin 300161, PR China
- National Bio-Protection Engineering Center, Tianjin 300161, PR China
| | - Hao Wang
- Institute of Medical Support Technology, Academy of Military Science, Tianjin 300161, PR China
- School of Electronic Information and Automation, Tianjin University of Science and Technology, Tianjin 300222, PR China
| | - Tie Li
- Science and Technology on Micro-system Laboratory, Shanghai Institute of Microsystem and Information Technology, Chinese Academy of Sciences, Shanghai 200050, PR China
- State Key Laboratories of Transducer Technology, Shanghai Institute of Microsystem and Information Technology, Chinese Academy of Sciences, Shanghai 200050, PR China
| | - Shixing Chen
- Science and Technology on Micro-system Laboratory, Shanghai Institute of Microsystem and Information Technology, Chinese Academy of Sciences, Shanghai 200050, PR China
- State Key Laboratories of Transducer Technology, Shanghai Institute of Microsystem and Information Technology, Chinese Academy of Sciences, Shanghai 200050, PR China
| | - Lixia Zhang
- Tianjin Haihe Hospital, Tianjin 300350, PR China
| | - Shun Mao
- College of Environmental Science and Engineering, Tongji University, Shanghai 200092, PR China
| | - Xiaohong Zhou
- State Key Joint Laboratory of ESPC, School of Environment, Tsinghua University, Beijing 100084, PR China
| | - Min Wu
- Tianjin Haihe Hospital, Tianjin 300350, PR China
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Yasuno G, Koide H, Oku N, Asai T. Influence of Purification Process on the Function of Synthetic Polymer Nanoparticles. Chem Pharm Bull (Tokyo) 2021; 69:773-780. [PMID: 34334521 DOI: 10.1248/cpb.c21-00273] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Multifunctional synthetic polymers can bind to target molecules and are therefore widely investigated in diagnostics, drug delivery carriers, and separation carriers. Because these polymers are synthesized from nonbiological components, purification processes (e.g., chromatography, dialysis, extraction, and centrifugation) must be conducted after the synthesis. Although several purification methods are used for polymer purification, few reports have revealed the influence of purification process on the functions of polymer. In this study, we demonstrated that the characteristics, function, and stability of synthetic polymer depend on the purification process. N-Isopropylacrylamide-based polymer nanoparticles (NPs) and melittin (i.e., honey bee venom) were used as a model of synthetic polymer and target toxic peptide, respectively. Synthesized NPs were purified by dialysis in methanol, acetone precipitation, or centrifugation. NPs purified by dialysis in ultrapure water were used as control NPs. Then, NP size, surface charge, toxin neutralization effect, and stability were determined. NP size did not considerably change by purification with centrifugation; however, it decreased by purification using dialysis in methanol and acetone precipitation compared with that of control NPs. The ζ-potential of NPs changed after each purification process compared with that of control NPs. The melittin neutralization efficiency of NPs depended on the purification process; i.e., it decreased by acetone precipitation and increased by dialysis in methanol and centrifugation compared with that of control NPs. Of note, the addition of methanol and acetone decreased NP stability. These studies implied the importance of considering the effect of the purification method on synthetic polymer function.
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Affiliation(s)
- Go Yasuno
- Department of Medical Biochemistry, University of Shizuoka School of Pharmaceutical Sciences
| | - Hiroyuki Koide
- Department of Medical Biochemistry, University of Shizuoka School of Pharmaceutical Sciences
| | - Naoto Oku
- Department of Medical Biochemistry, University of Shizuoka School of Pharmaceutical Sciences.,Faculty of Pharma-Science, Teikyo University
| | - Tomohiro Asai
- Department of Medical Biochemistry, University of Shizuoka School of Pharmaceutical Sciences
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Kim S, Park S, Cho YS, Kim Y, Tae JH, No TI, Shim JS, Jeong Y, Kang SH, Lee KH. Electrical Cartridge Sensor Enables Reliable and Direct Identification of MicroRNAs in Urine of Patients. ACS Sens 2021; 6:833-841. [PMID: 33284011 DOI: 10.1021/acssensors.0c01870] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Urinary miRNAs are biomarkers that demonstrate considerable promise for the noninvasive diagnosis and prognosis of diseases. However, because of background noise resulting from complex physiological features of urine, instability of miRNAs, and their low concentration, accurate monitoring of miRNAs in urine is challenging. To address these limitations, we developed a urine-based disposable and switchable electrical sensor that enables reliable and direct identification of miRNAs in patient urine. The proposed sensing platform combining disposable sensor chips composed of a reduced graphene oxide nanosheet and peptide nucleic acid facilitates the label-free detection of urinary miRNAs with high specificity and sensitivity. Using real-time detection of miRNAs in patient urine without pretreatment or signal amplification, this sensor allows rapid, direct detection of target miRNAs in a broad dynamic range with a detection limit down to 10 fM in human urine specimens within 20 min and enables simultaneous quantification of multiple miRNAs. As confirmed using a blind comparison with the results of pathological examination of patients with prostate cancer, the sensor offers the potential to improve the accuracy of early diagnosis before a biopsy is taken. This study holds the usefulness of the practical sensor for the clinical diagnosis of urological diseases.
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Affiliation(s)
- Seongchan Kim
- Center for Biomaterials, Biomedical Research Institute, Korea Institute of Science and Technology (KIST), Seoul 02792, Republic of Korea
| | - Sungwook Park
- Center for Biomaterials, Biomedical Research Institute, Korea Institute of Science and Technology (KIST), Seoul 02792, Republic of Korea
| | - Young Soo Cho
- Center for Biomaterials, Biomedical Research Institute, Korea Institute of Science and Technology (KIST), Seoul 02792, Republic of Korea
| | - Younghoon Kim
- Center for Biomaterials, Biomedical Research Institute, Korea Institute of Science and Technology (KIST), Seoul 02792, Republic of Korea
| | - Jong Hyun Tae
- Department of Urology, Korea University, School of Medicine, Seoul 02841, Republic of Korea
| | - Tae Il No
- Department of Urology, Korea University, School of Medicine, Seoul 02841, Republic of Korea
| | - Ji Sung Shim
- Department of Urology, Korea University, School of Medicine, Seoul 02841, Republic of Korea
| | - Youngdo Jeong
- Center for Biomaterials, Biomedical Research Institute, Korea Institute of Science and Technology (KIST), Seoul 02792, Republic of Korea
- Department of HY-KIST Bio-convergence, Hanyang University, Seoul 04763, Republic of Korea
| | - Seok Ho Kang
- Department of Urology, Korea University, School of Medicine, Seoul 02841, Republic of Korea
| | - Kwan Hyi Lee
- Center for Biomaterials, Biomedical Research Institute, Korea Institute of Science and Technology (KIST), Seoul 02792, Republic of Korea
- KU-KIST Graduate School of Converging Science and Technology, Korea University, Seoul 02841, Republic of Korea
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Nakatsuka N, Abendroth JM, Yang KA, Andrews AM. Divalent Cation Dependence Enhances Dopamine Aptamer Biosensing. ACS APPLIED MATERIALS & INTERFACES 2021; 13:9425-9435. [PMID: 33410656 PMCID: PMC7933093 DOI: 10.1021/acsami.0c17535] [Citation(s) in RCA: 34] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
Oligonucleotide receptors (aptamers), which change conformation upon target recognition, enable electronic biosensing under high ionic-strength conditions when coupled to field-effect transistors (FETs). Because highly negatively charged aptamer backbones are influenced by ion content and concentration, biosensor performance and target sensitivities were evaluated under application conditions. For a recently identified dopamine aptamer, physiological concentrations of Mg2+ and Ca2+ in artificial cerebrospinal fluid produced marked potentiation of dopamine FET-sensor responses. By comparison, divalent cation-associated signal amplification was not observed for FET sensors functionalized with a recently identified serotonin aptamer or a previously reported dopamine aptamer. Circular dichroism spectroscopy revealed Mg2+- and Ca2+-induced changes in target-associated secondary structure for the new dopamine aptamer, but not the serotonin aptamer nor the old dopamine aptamer. Thioflavin T displacement corroborated the Mg2+ dependence of the new dopamine aptamer for target detection. These findings imply allosteric binding interactions between divalent cations and dopamine for the new dopamine aptamer. Developing and testing sensors in ionic environments that reflect intended applications are best practices for identifying aptamer candidates with favorable attributes and elucidating sensing mechanisms.
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Affiliation(s)
- Nako Nakatsuka
- Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, CA 90095, United States
- California NanoSystems Institute, University of California, Los Angeles, Los Angeles, CA 90095, United States
| | - John M. Abendroth
- Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, CA 90095, United States
- California NanoSystems Institute, University of California, Los Angeles, Los Angeles, CA 90095, United States
| | - Kyung-Ae Yang
- Division of Experimental Therapeutics, Department of Medicine, Columbia University, New York, New York 10032, United States
| | - Anne M. Andrews
- Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, CA 90095, United States
- California NanoSystems Institute, University of California, Los Angeles, Los Angeles, CA 90095, United States
- Department of Psychiatry and Biobehavioral Sciences, Semel Institute for Neuroscience and Human Behavior, and Hatos Center for Neuropharmacology, University of California, Los Angeles, Los Angeles, CA 90095, United States
- Corresponding Author:
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Himori S, Nishitani S, Sakata T. Aptamer-based nanofilter interface for small-biomarker detection with potentiometric biosensor. Electrochim Acta 2021. [DOI: 10.1016/j.electacta.2020.137631] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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Tailoring the Radionuclide Encapsulation and Surface Chemistry of La(223Ra)VO4 Nanoparticles for Targeted Alpha Therapy. JOURNAL OF NANOTHERANOSTICS 2021. [DOI: 10.3390/jnt2010003] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
The development of targeted alpha therapy (TAT) as a viable cancer treatment requires innovative solutions to challenges associated with radionuclide retention to enhance local tumor cytotoxicity and to minimize off-target effects. Nanoparticles (NPs) with high encapsulation and high retention of radionuclides have shown potential in overcoming these issues. This article shows the influence of pH on the structure of lanthanum vanadate (LaVO4) NPs and its impact on the radiochemical yield of 223Ra and subsequent retention of its decay daughters, 211Pb and 211Bi. An acidic pH (4.9) results in a high fraction of La(223Ra)VO4 NPs with tetragonal structure (44.6–66.1%) and a 223Ra radiochemical yield <40%. Adjusting the pH to 11 yields >80% of La(223Ra)VO4 NPs with monoclinic structure and increases the 223Ra radiochemical yield >85%. The leakage of decay daughters from La(223Ra)VO4 NPs (pH 11) was <5% and <0.5% when exposed to deionized water and phosphate-buffered saline, respectively. Altering the surface chemistry of La(223Ra)VO4 NPs with carboxylate and phosphate compounds resulted in a threefold decrease in hydrodynamic diameter and a 223Ra radiochemical yield between 74.7% and 99.6%. These results show the importance of tailoring the synthesis parameters and surface chemistry of LaVO4 NPs to obtain high encapsulation and retention of radionuclides.
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Purwidyantri A, Domingues T, Borme J, Guerreiro JR, Ipatov A, Abreu CM, Martins M, Alpuim P, Prado M. Influence of the Electrolyte Salt Concentration on DNA Detection with Graphene Transistors. BIOSENSORS 2021; 11:bios11010024. [PMID: 33477344 PMCID: PMC7830926 DOI: 10.3390/bios11010024] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/22/2020] [Revised: 01/14/2021] [Accepted: 01/15/2021] [Indexed: 06/12/2023]
Abstract
Liquid-gated Graphene Field-Effect Transistors (GFET) are ultrasensitive bio-detection platforms carrying out the graphene's exceptional intrinsic functionalities. Buffer and dilution factor are prevalent strategies towards the optimum performance of the GFETs. However, beyond the Debye length (λD), the role of the graphene-electrolytes' ionic species interactions on the DNA behavior at the nanoscale interface is complicated. We studied the characteristics of the GFETs under different ionic strength, pH, and electrolyte type, e.g., phosphate buffer (PB), and phosphate buffer saline (PBS), in an automatic portable built-in system. The electrostatic gating and charge transfer phenomena were inferred from the field-effect measurements of the Dirac point position in single-layer graphene (SLG) transistors transfer curves. Results denote that λD is not the main factor governing the effective nanoscale screening environment. We observed that the longer λD was not the determining characteristic for sensitivity increment and limit of detection (LoD) as demonstrated by different types and ionic strengths of measuring buffers. In the DNA hybridization study, our findings show the role of the additional salts present in PBS, as compared to PB, in increasing graphene electron mobility, electrostatic shielding, intermolecular forces and DNA adsorption kinetics leading to an improved sensitivity.
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Affiliation(s)
- Agnes Purwidyantri
- Food Quality and Safety Group, International Iberian Nanotechnology Laboratory (INL), Av. Mestre José Veiga, 4715-330 Braga, Portugal; (J.R.G.); (A.I.); (M.P.)
| | - Telma Domingues
- 2D Materials and Devices Group, International Iberian Nanotechnology Laboratory (INL), Av. Mestre José Veiga, 4715-330 Braga, Portugal; (T.D.); (J.B.)
| | - Jérôme Borme
- 2D Materials and Devices Group, International Iberian Nanotechnology Laboratory (INL), Av. Mestre José Veiga, 4715-330 Braga, Portugal; (T.D.); (J.B.)
| | - Joana Rafaela Guerreiro
- Food Quality and Safety Group, International Iberian Nanotechnology Laboratory (INL), Av. Mestre José Veiga, 4715-330 Braga, Portugal; (J.R.G.); (A.I.); (M.P.)
| | - Andrey Ipatov
- Food Quality and Safety Group, International Iberian Nanotechnology Laboratory (INL), Av. Mestre José Veiga, 4715-330 Braga, Portugal; (J.R.G.); (A.I.); (M.P.)
| | - Catarina M. Abreu
- Nanomedicine Group, International Iberian Nanotechnology Laboratory (INL), Av. Mestre José Veiga, 4715-330 Braga, Portugal;
| | - Marco Martins
- Nano-ICs Group, International Iberian Nanotechnology Laboratory (INL), Av. Mestre José Veiga, 4715-330 Braga, Portugal;
| | - Pedro Alpuim
- 2D Materials and Devices Group, International Iberian Nanotechnology Laboratory (INL), Av. Mestre José Veiga, 4715-330 Braga, Portugal; (T.D.); (J.B.)
- Center of Physics, University of Minho, 4710-057 Braga, Portugal
| | - Marta Prado
- Food Quality and Safety Group, International Iberian Nanotechnology Laboratory (INL), Av. Mestre José Veiga, 4715-330 Braga, Portugal; (J.R.G.); (A.I.); (M.P.)
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Su PC, Chen BH, Lee YC, Yang YS. Silicon Nanowire Field-Effect Transistor as Biosensing Platforms for Post-Translational Modification. BIOSENSORS-BASEL 2020; 10:bios10120213. [PMID: 33371301 PMCID: PMC7767353 DOI: 10.3390/bios10120213] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/03/2020] [Revised: 12/16/2020] [Accepted: 12/18/2020] [Indexed: 02/06/2023]
Abstract
Protein tyrosine sulfation (PTS), a vital post-translational modification, facilitates protein–protein interactions and regulates many physiological and pathological responses. Monitoring PTS has been difficult owing to the instability of sulfated proteins and the lack of a suitable method for detecting the protein sulfate ester. In this study, we combined an in situ PTS system with a high-sensitivity polysilicon nanowire field-effect transistor (pSNWFET)-based sensor to directly monitor PTS formation. A peptide containing the tyrosine sulfation site of P-selectin glycoprotein ligand (PSGL)-1 was immobilized onto the surface of the pSNWFET by using 3-aminopropyltriethoxysilane and glutaraldehyde as linker molecules. A coupled enzyme sulfation system consisting of tyrosylprotein sulfotransferase and phenol sulfotransferase was used to catalyze PTS of the immobilized PSGL-1 peptide. Enzyme-catalyzed sulfation of the immobilized peptide was readily observed through the shift of the drain current–gate voltage curves of the pSNWFET before and after PTS. We expect that this approach can be developed as a next generation biochip for biomedical research and industries.
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Affiliation(s)
- Ping-Chia Su
- Department of Biological Science and Technology, National Chiao Tung University, Hsinchu 300, Taiwan; (P.-C.S.); (B.-H.C.); (Y.-C.L.)
| | - Bo-Han Chen
- Department of Biological Science and Technology, National Chiao Tung University, Hsinchu 300, Taiwan; (P.-C.S.); (B.-H.C.); (Y.-C.L.)
| | - Yi-Chan Lee
- Department of Biological Science and Technology, National Chiao Tung University, Hsinchu 300, Taiwan; (P.-C.S.); (B.-H.C.); (Y.-C.L.)
| | - Yuh-Shyong Yang
- Department of Biological Science and Technology, National Chiao Tung University, Hsinchu 300, Taiwan; (P.-C.S.); (B.-H.C.); (Y.-C.L.)
- Center for Intelligent Drug Systems and Smart Bio-Devices (IDS2B), National Chiao Tung University, Hsinchu 300, Taiwan
- Correspondence: ; Tel.: +886-3-5731983
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12
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Samajdar RN, Asampille G, Atreya HS, Bhattacharyya AJ. Hemoglobin Dynamics in Solution vis-à-vis Under Confinement: An Electrochemical Perspective. J Phys Chem B 2020; 124:5771-5779. [PMID: 32551673 DOI: 10.1021/acs.jpcb.0c02372] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
Confining heme protein in silico often leads to beneficial functionalities such as an enhanced electrochemical response from the heme center. This can be harnessed to design effective biosensors for medical diagnostics. Proteins under confinement, surface confinement on the electrode to be precise, have more ordered and monodisperse structure compared to the protein in bulk solution. As the electrochemical response of a protein comes from those protein molecules that are confined within the electrical double layer across the electrode-electrolyte interface, it is expected that restriction of conformational fluctuations of the polymeric protein will help in enhancement of the electrochemical response. This is probably the prima facie reason for electrochemical response enhancement under confinement. We examine the dynamic features of hemoglobin under confinement vis-à-vis that in bulk solution. We use a variety of spectroscopic techniques across a wide time-space window to establish the following facts: (a) hardening of the protein polypeptide backbone, (b) slowing down of protein diffusion, (c) increase in relaxation times in NMR, and (d) slowing down of dielectric relaxation times under confinement. This indicates an overall quenching of protein dynamics when the protein is confined inside silica matrix. Thus, we hypothesize that along with retention of secondary structure, this quenching of dynamics contributes to the enhancement of electrochemical response observed.
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Affiliation(s)
- Rudra N Samajdar
- Solid State and Structural Chemistry Unit, Indian Institute of Science, Bangalore 560012, India
| | | | - Hanudatta S Atreya
- NMR Research Center, Indian Institute of Science, Bangalore 560012, India
| | - Aninda J Bhattacharyya
- Solid State and Structural Chemistry Unit, Indian Institute of Science, Bangalore 560012, India
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13
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Wilson ER, Parker LM, Orth A, Nunn N, Torelli M, Shenderova O, Gibson BC, Reineck P. The effect of particle size on nanodiamond fluorescence and colloidal properties in biological media. NANOTECHNOLOGY 2019; 30:385704. [PMID: 31181558 DOI: 10.1088/1361-6528/ab283d] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Fluorescent nanodiamonds (FNDs) are extremely photostable markers and nanoscale sensors, which are increasingly used in biomedical applications. Nanoparticle size is a critical parameter in the majority of these applications. Yet, the effect of particle size on FND's fluorescence and colloidal properties is not well understood today. Here, we investigate the fluorescence and colloidal stability of commercially available high-pressure high-temperature FNDs containing nitrogen-vacancy (NV) centers in biological media. Unconjugated FNDs in sizes ranging between 10 nm and 140 nm with an oxidized surface are studied using dynamic light scattering and fluorescence spectroscopy. We determine their colloidal stability in water, fetal bovine serum, Dulbecco's Modified Eagle Medium and complete media. The FNDs' relative fluorescence brightness, the NV charge-state, and the FND fluorescence against media autofluorescence are analyzed as a function of FND size. Our results will enable researchers in biology and beyond to identify the most promising FND particle size for their application.
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Affiliation(s)
- Emma R Wilson
- ARC Centre of Excellence for Nanoscale BioPhotonics, School of Science, RMIT University, Melbourne, VIC 3001, Australia
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14
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Baraban L, Ibarlucea B, Baek E, Cuniberti G. Hybrid Silicon Nanowire Devices and Their Functional Diversity. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2019; 6:1900522. [PMID: 31406669 PMCID: PMC6685480 DOI: 10.1002/advs.201900522] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2019] [Revised: 04/25/2019] [Indexed: 05/06/2023]
Abstract
In the pool of nanostructured materials, silicon nanostructures are known as conventionally used building blocks of commercially available electronic devices. Their application areas span from miniaturized elements of devices and circuits to ultrasensitive biosensors for diagnostics. In this Review, the current trends in the developments of silicon nanowire-based devices are summarized, and their functionalities, novel architectures, and applications are discussed from the point of view of analog electronics, arisen from the ability of (bio)chemical gating of the carrier channel. Hybrid nanowire-based devices are introduced and described as systems decorated by, e.g., organic complexes (biomolecules, polymers, and organic films), aimed to substantially extend their functionality, compared to traditional systems. Their functional diversity is explored considering their architecture as well as areas of their applications, outlining several groups of devices that benefit from the coatings. The first group is the biosensors that are able to represent label-free assays thanks to the attached biological receptors. The second group is represented by devices for optoelectronics that acquire higher optical sensitivity or efficiency due to the specific photosensitive decoration of the nanowires. Finally, the so-called new bioinspired neuromorphic devices are shown, which are aimed to mimic the functions of the biological cells, e.g., neurons and synapses.
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Affiliation(s)
- Larysa Baraban
- Max Bergmann Center of Biomaterials and Institute for Materials ScienceTechnische Universität Dresden01062DresdenGermany
- Center for Advancing Electronics Dresden (CfAED) TU Dresden01062DresdenGermany
| | - Bergoi Ibarlucea
- Max Bergmann Center of Biomaterials and Institute for Materials ScienceTechnische Universität Dresden01062DresdenGermany
- Center for Advancing Electronics Dresden (CfAED) TU Dresden01062DresdenGermany
| | - Eunhye Baek
- Max Bergmann Center of Biomaterials and Institute for Materials ScienceTechnische Universität Dresden01062DresdenGermany
- Center for Advancing Electronics Dresden (CfAED) TU Dresden01062DresdenGermany
| | - Gianaurelio Cuniberti
- Max Bergmann Center of Biomaterials and Institute for Materials ScienceTechnische Universität Dresden01062DresdenGermany
- Center for Advancing Electronics Dresden (CfAED) TU Dresden01062DresdenGermany
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15
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Lin KC, Jagannath B, Muthukumar S, Prasad S. Sub-picomolar label-free detection of thrombin using electrochemical impedance spectroscopy of aptamer-functionalized MoS 2. Analyst 2018. [PMID: 28650005 DOI: 10.1039/c7an00548b] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
An ultrasensitive aptasensor for the label free non-faradaic detection of thrombin has been demonstrated on molybdenum disulphide (MoS2) nanosheets. These nanosheets were physiochemically immobilized onto a silicon micro-electrode platform. Thrombin detection was achieved through the charge modulation of the electrical double layer due to the specific and dose dependent binding of thrombin to the surface of thiol terminated ssDNA aptamer functionalized MoS2 nanosheets. Electrical double layer charge modulation associated with thrombin binding was characterized using electrochemical impedance spectroscopy. Dynamic light scattering was also used to confirm the dose dependent behavior. ATR-FTIR spectroscopy and XPS analysis were independently used to validate the functionalization of the ssDNA aptamer onto MoS2 nanosheets. ssDNA aptamer functionalized molybdenum disulfide (MoS2) for selective and specific capture of thrombin was demonstrated both in phosphate buffered saline (PBS) and human serum. The optimized immunoassay enabled the detection of thrombin ranging from 267 fM to 267 pM in phosphate buffer. The limit of detection of 53 pM and the linear dynamic range of detection of thrombin ranged from 53 to 854 pM in human serum. The rapid response time for the electrochemical impedance spectroscopy signal makes it an attractive option for the real-time detection of thrombin based point-of-care diagnostic devices.
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Affiliation(s)
- Kai-Chun Lin
- Department of Bioengineering, University of Texas, Dallas, Richardson, TX 75080, USA.
| | - Badrinath Jagannath
- Department of Bioengineering, University of Texas, Dallas, Richardson, TX 75080, USA.
| | | | - Shalini Prasad
- Department of Bioengineering, University of Texas, Dallas, Richardson, TX 75080, USA.
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16
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Lowe BM, Sun K, Zeimpekis I, Skylaris CK, Green NG. Field-effect sensors - from pH sensing to biosensing: sensitivity enhancement using streptavidin-biotin as a model system. Analyst 2018; 142:4173-4200. [PMID: 29072718 DOI: 10.1039/c7an00455a] [Citation(s) in RCA: 62] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Field-Effect Transistor sensors (FET-sensors) have been receiving increasing attention for biomolecular sensing over the last two decades due to their potential for ultra-high sensitivity sensing, label-free operation, cost reduction and miniaturisation. Whilst the commercial application of FET-sensors in pH sensing has been realised, their commercial application in biomolecular sensing (termed BioFETs) is hindered by poor understanding of how to optimise device design for highly reproducible operation and high sensitivity. In part, these problems stem from the highly interdisciplinary nature of the problems encountered in this field, in which knowledge of biomolecular-binding kinetics, surface chemistry, electrical double layer physics and electrical engineering is required. In this work, a quantitative analysis and critical review has been performed comparing literature FET-sensor data for pH-sensing with data for sensing of biomolecular streptavidin binding to surface-bound biotin systems. The aim is to provide the first systematic, quantitative comparison of BioFET results for a single biomolecular analyte, specifically streptavidin, which is the most commonly used model protein in biosensing experiments, and often used as an initial proof-of-concept for new biosensor designs. This novel quantitative and comparative analysis of the surface potential behaviour of a range of devices demonstrated a strong contrast between the trends observed in pH-sensing and those in biomolecule-sensing. Potential explanations are discussed in detail and surface-chemistry optimisation is shown to be a vital component in sensitivity-enhancement. Factors which can influence the response, yet which have not always been fully appreciated, are explored and practical suggestions are provided on how to improve experimental design.
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Affiliation(s)
- Benjamin M Lowe
- Department of Electronics and Computer Science, Nano Research Group, University of Southampton, UK.
| | - Kai Sun
- Department of Electronics and Computer Science, Nano Research Group, University of Southampton, UK.
| | - Ioannis Zeimpekis
- Department of Electronics and Computer Science, Nano Research Group, University of Southampton, UK.
| | | | - Nicolas G Green
- Department of Electronics and Computer Science, Nano Research Group, University of Southampton, UK.
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17
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Lowe BM, Skylaris CK, Green NG, Shibuta Y, Sakata T. Molecular dynamics simulation of potentiometric sensor response: the effect of biomolecules, surface morphology and surface charge. NANOSCALE 2018; 10:8650-8666. [PMID: 29700545 DOI: 10.1039/c8nr00776d] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
The silica-water interface is critical to many modern technologies in chemical engineering and biosensing. One technology used commonly in biosensors, the potentiometric sensor, operates by measuring the changes in electric potential due to changes in the interfacial electric field. Predictive modelling of this response caused by surface binding of biomolecules remains highly challenging. In this work, through the most extensive molecular dynamics simulation of the silica-water interfacial potential and electric field to date, we report a novel prediction and explanation of the effects of nano-morphology on sensor response. Amorphous silica demonstrated a larger potentiometric response than an equivalent crystalline silica model due to increased sodium adsorption, in agreement with experiments showing improved sensor response with nano-texturing. We provide proof-of-concept that molecular dynamics can be used as a complementary tool for potentiometric biosensor response prediction. Effects that are conventionally neglected, such as surface morphology, water polarisation, biomolecule dynamics and finite-size effects, are explicitly modelled.
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Affiliation(s)
- B M Lowe
- Department of Materials Engineering, School of Engineering, The University of Tokyo 7-3-1 Hongo, Bunkyo, Tokyo 113-8656, Japan.
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18
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Joshi S, Bhatt VD, Märtl A, Becherer M, Lugli P. Regenerative, Highly-Sensitive, Non-Enzymatic Dopamine Sensor and Impact of Different Buffer Systems in Dopamine Sensing. BIOSENSORS-BASEL 2018; 8:bios8010009. [PMID: 29364160 PMCID: PMC5872057 DOI: 10.3390/bios8010009] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/12/2017] [Revised: 01/15/2018] [Accepted: 01/17/2018] [Indexed: 11/16/2022]
Abstract
Carbon nanotube field-effect transistors are used extensively in ultra-sensitive biomolecule sensing applications. Along with high sensitivity, the possibility of regeneration is highly desired in bio-sensors. An important constituent of such bio-sensing systems is the buffer used to maintain pH and provide an ionic conducting medium, among its other properties. In this work, we demonstrate highly-sensitive regenerative dopamine sensors and the impact of varying buffer composition and type on the electrolyte gated field effect sensors. The role of the buffer system is an often ignored condition in the electrical characterization of sensors. Non-enzymatic dopamine sensors are fabricated and regenerated in hydrochloric acid (HCl) solution. The sensors are finally measured against four different buffer solutions. The impact of the nature and chemical structure of buffer molecules on the dopamine sensors is shown, and the appropriate buffer systems are demonstrated.
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Affiliation(s)
- Saumya Joshi
- Department of Electrical Engineering and Information Technology, Institute for Nanoelectronics, Technische Universität München, 80333 Munich, Germany.
| | - Vijay Deep Bhatt
- Department of Electrical Engineering and Information Technology, Institute for Nanoelectronics, Technische Universität München, 80333 Munich, Germany.
| | - Andreas Märtl
- Department of Electrical Engineering and Information Technology, Institute for Nanoelectronics, Technische Universität München, 80333 Munich, Germany.
| | - Markus Becherer
- Department of Electrical Engineering and Information Technology, Institute for Nanoelectronics, Technische Universität München, 80333 Munich, Germany.
| | - Paolo Lugli
- Faculty of Science and Technology, Free University of Bozen-Bolzano, 39100 Bolzano, Italy.
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19
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Piffoux M, Ahmad N, Nelayah J, Wilhelm C, Silva A, Gazeau F, Alloyeau D. Monitoring the dynamics of cell-derived extracellular vesicles at the nanoscale by liquid-cell transmission electron microscopy. NANOSCALE 2018; 10:1234-1244. [PMID: 29292437 DOI: 10.1039/c7nr07576f] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Cell-derived extracellular vesicles (EVs) circulating in body fluids hold promises as bioactive therapeutic agents and as biomarkers to diagnose a wide range of diseases. However nano-imaging methods are needed to characterize these complex and heterogeneous soft materials in their native wet environment. Herein, we exploit liquid-cell transmission electron microscopy (LCTEM) to characterize the morphology and dynamic behavior of EVs in physiological media with nanometer resolution. The beam-induced controlled growth of Au nanoparticles on bilayer membranes is used as an original in situ staining method to improve the contrast of EVs and artificial liposomes. LCTEM provides information about the size distribution and concentration of EVs that are consistent with Cryo-TEM and nanoparticle tracking analysis measurements. Moreover, LCTEM gives a unique insight into the dynamics of EVs depending on their liquid environment. The size-dependent morphology of EVs is sensitive to osmotic stress which tends to transform their spherical shape to ellipsoidal, stomatocyte or discocyte morphologies. In the liquid-cell, EVs exhibit a sub-diffusive motion due to strong interactions between the Au nanoparticles and the liquid-cell windows. Finally, the high-resolution monitoring of EV aggregation and fusion illustrate that LCTEM opens up a new way to study cell-membrane dynamics.
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Affiliation(s)
- Max Piffoux
- Laboratoire Matière et Systèmes Complexes, UMR7057 CNRS/Université Paris Diderot, Paris, France
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20
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Kerr-Phillips TE, Aydemir N, Chan EWC, Barker D, Malmström J, Plesse C, Travas-Sejdic J. Conducting electrospun fibres with polyanionic grafts as highly selective, label-free, electrochemical biosensor with a low detection limit for non-Hodgkin lymphoma gene. Biosens Bioelectron 2017; 100:549-555. [PMID: 29017070 DOI: 10.1016/j.bios.2017.09.042] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2017] [Revised: 09/21/2017] [Accepted: 09/25/2017] [Indexed: 01/06/2023]
Abstract
A highly selective, label-free sensor for the non-Hodgkin lymphoma gene, with an aM detection limit, utilizing electrochemical impedance spectroscopy (EIS) is presented. The sensor consists of a conducting electrospun fibre mat, surface-grafted with poly(acrylic acid) (PAA) brushes and a conducting polymer sensing element with covalently attached oligonucleotide probes. The sensor was fabricated from electrospun NBR rubber, embedded with poly(3,4-ethylenedioxythiophene) (PEDOT), followed by grafting poly(acrylic acid) brushes and then electrochemically polymerizing a conducting polymer monomer with ssDNA probe sequence pre-attached. The resulting non-Hodgkin lymphoma gene sensor showed a detection limit of 1aM (1 × 10-18mol/L), more than 400 folds lower compared to a thin-film analogue. The sensor presented extraordinary selectivity, with only 1%, 2.7% and 4.6% of the signal recorded for the fully non-complimentary, T-A and G-C base mismatch oligonucleotide sequences, respectively. We suggest that such greatly enhanced selectivity is due to the presence of negatively charged carboxylic acid moieties from PAA grafts that electrostatically repel the non-complementary and mismatch DNA sequences, overcoming the non-specific binding.
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Affiliation(s)
- Thomas E Kerr-Phillips
- Polymer Electronics Research Centre (PERC), School of Chemical Sciences, University of Auckland, 23 Symonds Street, Auckland, New Zealand
| | - Nihan Aydemir
- Polymer Electronics Research Centre (PERC), School of Chemical Sciences, University of Auckland, 23 Symonds Street, Auckland, New Zealand
| | - Eddie Wai Chi Chan
- Polymer Electronics Research Centre (PERC), School of Chemical Sciences, University of Auckland, 23 Symonds Street, Auckland, New Zealand
| | - David Barker
- Polymer Electronics Research Centre (PERC), School of Chemical Sciences, University of Auckland, 23 Symonds Street, Auckland, New Zealand
| | - Jenny Malmström
- Polymer Electronics Research Centre (PERC), School of Chemical Sciences, University of Auckland, 23 Symonds Street, Auckland, New Zealand; Chemical and Materials Engineering, University of Auckland, 2-6 Park Avenue, Auckland, New Zealand; MacDiarmid Institute for Advanced Materials and Nanotechnology, Victoria University of Wellington, PO Box 600, Wellington, New Zealand
| | - Cedric Plesse
- LPPI-EA2528, Institut des Materiaux, 5 mail Gay Lussac, Neuville sur Oise, Cergy-Pontoise cedex 95031, France
| | - Jadranka Travas-Sejdic
- Polymer Electronics Research Centre (PERC), School of Chemical Sciences, University of Auckland, 23 Symonds Street, Auckland, New Zealand; MacDiarmid Institute for Advanced Materials and Nanotechnology, Victoria University of Wellington, PO Box 600, Wellington, New Zealand.
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21
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Gonzalez Garcia LE, MacGregor-Ramiasa M, Visalakshan RM, Vasilev K. Protein Interactions with Nanoengineered Polyoxazoline Surfaces Generated via Plasma Deposition. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2017; 33:7322-7331. [PMID: 28658956 DOI: 10.1021/acs.langmuir.7b01279] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Protein adsorption to biomaterials is critical in determining their suitability for specific applications, such as implants or biosensors. Here, we show that surface nanoroughness can be tailored to control the covalent binding of proteins to plasma-deposited polyoxazoline (PPOx). Nanoengineered surfaces were created by immobilizing gold nanoparticles varying in size and surface density on PPOx films. To keep the surface chemistry consistent while preserving the nanotopography, all substrates were overcoated with a nanothin PPOx film. Bovine serum albumin was chosen to study protein interactions with the nanoengineered surfaces. The results demonstrate that the amount of protein bound to the surface is not directly correlated with the increase in surface area. Instead, it is determined by nanotopography-induced geometric effects and surface wettability. A densely packed array of 16 and 38 nm nanoparticles hinders protein adsorption compared to smooth PPOx substrates, while it increases for 68 nm nanoparticles. These adaptable surfaces could be used for designing biomaterials where proteins adsorption is or is not desirable.
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Affiliation(s)
- Laura E Gonzalez Garcia
- School of Engineering, Future Industries Institute, University of South Australia, Mawson Lakes Campus , Mawson Lakes, South Australia 5095, Australia
| | - Melanie MacGregor-Ramiasa
- School of Engineering, Future Industries Institute, University of South Australia, Mawson Lakes Campus , Mawson Lakes, South Australia 5095, Australia
| | - Rahul Madathiparambil Visalakshan
- School of Engineering, Future Industries Institute, University of South Australia, Mawson Lakes Campus , Mawson Lakes, South Australia 5095, Australia
| | - Krasimir Vasilev
- School of Engineering, Future Industries Institute, University of South Australia, Mawson Lakes Campus , Mawson Lakes, South Australia 5095, Australia
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22
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Ma Y, Yamamoto Y, Nicovich PR, Goyette J, Rossy J, Gooding JJ, Gaus K. A FRET sensor enables quantitative measurements of membrane charges in live cells. Nat Biotechnol 2017; 35:363-370. [DOI: 10.1038/nbt.3828] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2015] [Accepted: 02/15/2017] [Indexed: 02/07/2023]
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23
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Tran DP, Wolfrum B, Stockmann R, Pai JH, Pourhassan-Moghaddam M, Offenhäusser A, Thierry B. Complementary metal oxide semiconductor compatible silicon nanowires-on-a-chip: fabrication and preclinical validation for the detection of a cancer prognostic protein marker in serum. Anal Chem 2015; 87:1662-8. [PMID: 25531273 DOI: 10.1021/ac503374j] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
An integrated translational biosensing technology based on arrays of silicon nanowire field-effect transistors (SiNW FETs) is described and has been preclinically validated for the ultrasensitive detection of the cancer biomarker ALCAM in serum. High-quality SiNW arrays have been rationally designed toward their implementation as molecular biosensors. The FET sensing platform has been fabricated using a complementary metal oxide semiconductor (CMOS)-compatible process. Reliable and reproducible electrical performance has been demonstrated via electrical characterization using a custom-designed portable readout device. Using this platform, the cancer prognostic marker ALCAM could be detected in serum with a detection limit of 15.5 pg/mL. Importantly, the detection could be completed in less than 30 min and span a wide dynamic detection range (∼10(5)). The SiNW-on-a-chip biosensing technology paves the way to the translational clinical application of FET in the detection of cancer protein markers.
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Affiliation(s)
- Duy P Tran
- Ian Wark Research Institute, University of South Australia , Mawson Lakes Campus, Mawson Lakes, South Australia 5095, Australia
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24
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Huang W, Diallo AK, Dailey JL, Besar K, Katz HE. Electrochemical processes and mechanistic aspects of field-effect sensors for biomolecules. JOURNAL OF MATERIALS CHEMISTRY. C 2015; 3:6445-6470. [PMID: 29238595 PMCID: PMC5724786 DOI: 10.1039/c5tc00755k] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
Electronic biosensing is a leading technology for determining concentrations of biomolecules. In some cases, the presence of an analyte molecule induces a measured change in current flow, while in other cases, a new potential difference is established. In the particular case of a field effect biosensor, the potential difference is monitored as a change in conductance elsewhere in the device, such as across a film of an underlying semiconductor. Often, the mechanisms that lead to these responses are not specifically determined. Because improved understanding of these mechanisms will lead to improved performance, it is important to highlight those studies where various mechanistic possibilities are investigated. This review explores a range of possible mechanistic contributions to field-effect biosensor signals. First, we define the field-effect biosensor and the chemical interactions that lead to the field effect, followed by a section on theoretical and mechanistic background. We then discuss materials used in field-effect biosensors and approaches to improving signals from field-effect biosensors. We specifically cover the biomolecule interactions that produce local electric fields, structures and processes at interfaces between bioanalyte solutions and electronic materials, semiconductors used in biochemical sensors, dielectric layers used in top-gated sensors, and mechanisms for converting the surface voltage change to higher signal/noise outputs in circuits.
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Affiliation(s)
- Weiguo Huang
- Department of Materials Science and Engineering, Johns Hopkins University, 3400 North Charles Street, 206 Maryland Hall, Baltimore, MD, USA
| | - Abdou Karim Diallo
- Department of Materials Science and Engineering, Johns Hopkins University, 3400 North Charles Street, 206 Maryland Hall, Baltimore, MD, USA
| | - Jennifer L Dailey
- Department of Materials Science and Engineering, Johns Hopkins University, 3400 North Charles Street, 206 Maryland Hall, Baltimore, MD, USA
| | - Kalpana Besar
- Department of Materials Science and Engineering, Johns Hopkins University, 3400 North Charles Street, 206 Maryland Hall, Baltimore, MD, USA
| | - Howard E Katz
- Department of Materials Science and Engineering, Johns Hopkins University, 3400 North Charles Street, 206 Maryland Hall, Baltimore, MD, USA
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25
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Agomelatine strongly interacts with zwitterionic DPPC and charged DPPG membranes. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2014; 1838:2798-806. [PMID: 25091390 DOI: 10.1016/j.bbamem.2014.07.025] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2013] [Revised: 07/07/2014] [Accepted: 07/25/2014] [Indexed: 01/01/2023]
Abstract
Depression is one of the most common psychiatric diseases in the population. Agomelatine is a novel antidepressant drug with melatonin receptor agonistic and serotonin 5-HT2C antagonistic properties. Furthermore, being a melatonergic drug, agomelatine has the potential of being used in therapeutic applications like melatonin as an antioxidant, anti-inflammatory and antiapoptotic drug. The action mechanism of agomelatine on the membrane structure has not been clarified yet. In the present study, we aimed to investigate the interaction of agomelatine with model membranes of dipalmitoylphosphatidylcholine (DPPC) and dipalmitoylphosphatidylgylcerol (DPPG) by Fourier transform infrared (FTIR) spectroscopy and differential scanning calorimetry (DSC). We found that agomelatine interacts with the head group in such a manner that it destabilizes the membrane architecture to a large extent. Thus, agomelatine causes alterations in the order, packing and dynamics of the DPPC and DPPG model membranes. Our results suggest that agomelatine strongly interacts with zwitterionic and charged membrane phospholipids. Because lipid structure and dynamics may have influence on the structure of membrane bound proteins and affect the signal transduction systems of membranes, these effects of agomelatine may be important in its action mechanism.
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26
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Gorgieva S, Kokol V. Processing of gelatin-based cryogels with improved thermomechanical resistance, pore size gradient, and high potential for sustainable protein drug release. J Biomed Mater Res A 2014; 103:1119-30. [PMID: 24924219 DOI: 10.1002/jbm.a.35261] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2014] [Accepted: 06/04/2014] [Indexed: 01/15/2023]
Abstract
Porous gelatin (GEL) cryogels were processed by spatiotemporal and temperature-controlled gelation and freezing-lyophilizaton process, followed by zero-length crosslinking, using different molarities of reagents (EDC and NHS) and reaction media (100% PBS or 20/80% PBS/EtOH mixture) for variable time extensions (1-24 h). In this way, tuneable cryogels with gradient microporosity (from 100 µm to 1000 µm) were formed, being mainly influenced by crosslinkers' concentration and EtOH addition. Later affect the pore morphology (from round to ellipsoid), consequently modulating the steady-state physiological swelling profile toward twice lower values (∼ 600%) comparing to stepwise swelling of in 100% PBS media crosslinked cryogels. While the presence of EtOH decelerate the crosslinking kinetic by retaining cryogels' microstructure formed during freezing, the 100% PBS and higher EDC molarity resulted in approximately 40% crosslinking degree, being expressed as a thermal resistance of cryogels up to approximately 73°C. Finally, the tuneable enzymatic resistance allow time-dependent poly-L-Lysine (pL) release profile in up to month period. The processed GEL cryogels have potential in broad range biomedical applications, especially as sustainable, protein-based drug delivery systems.
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Affiliation(s)
- Selestina Gorgieva
- Faculty of Mechanical Engineering, Institute for Engineering Materials and Design, University of Maribor, Maribor, Slovenia
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27
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Silicon nanowires as field-effect transducers for biosensor development: A review. Anal Chim Acta 2014; 825:1-25. [DOI: 10.1016/j.aca.2014.03.016] [Citation(s) in RCA: 95] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2013] [Revised: 03/11/2014] [Accepted: 03/13/2014] [Indexed: 12/28/2022]
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28
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Møller TC, Wirth VF, Roberts NI, Bender J, Bach A, Jacky BPS, Strømgaard K, Deussing JM, Schwartz TW, Martinez KL. PDZ domain-mediated interactions of G protein-coupled receptors with postsynaptic density protein 95: quantitative characterization of interactions. PLoS One 2013; 8:e63352. [PMID: 23691031 PMCID: PMC3653948 DOI: 10.1371/journal.pone.0063352] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2013] [Accepted: 04/02/2013] [Indexed: 11/19/2022] Open
Abstract
G protein-coupled receptors (GPCRs) constitute the largest family of membrane proteins in the human genome. Their signaling is regulated by scaffold proteins containing PDZ domains, but although these interactions are important for GPCR function, they are still poorly understood. We here present a quantitative characterization of the kinetics and affinity of interactions between GPCRs and one of the best characterized PDZ scaffold proteins, postsynaptic density protein 95 (PSD-95), using fluorescence polarization (FP) and surface plasmon resonance (SPR). By comparing these in vitro findings with colocalization of the full-length proteins in cells and with previous studies, we suggest that the range of relevant interactions might extend to interactions with K i = 450 µM in the in vitro assays. Within this range, we identify novel PSD-95 interactions with the chemokine receptor CXCR2, the neuropeptide Y receptor Y2, and four of the somatostatin receptors (SSTRs). The interaction with SSTR1 was further investigated in mouse hippocampal neurons, where we found a clear colocalization between the endogenously expressed proteins, indicating a potential for further investigation of the role of this interaction. The approach can easily be transferred to other receptors and scaffold proteins and this could help accelerate the discovery and quantitative characterization of GPCR-PDZ interactions.
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Affiliation(s)
- Thor C. Møller
- Department of Chemistry & Nano-Science Center, University of Copenhagen, Copenhagen, Denmark
| | - Volker F. Wirth
- Department of Chemistry & Nano-Science Center, University of Copenhagen, Copenhagen, Denmark
| | - Nina I. Roberts
- Department of Chemistry & Nano-Science Center, University of Copenhagen, Copenhagen, Denmark
| | - Julia Bender
- Molecular Neurogenetics, Max Planck Institute of Psychiatry, Munich, Germany
| | - Anders Bach
- Department of Drug Design and Pharmacology, University of Copenhagen, Copenhagen, Denmark
| | - Birgitte P. S. Jacky
- Department of Neuroscience and Pharmacology & Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen, Copenhagen, Denmark
| | - Kristian Strømgaard
- Department of Drug Design and Pharmacology, University of Copenhagen, Copenhagen, Denmark
| | - Jan M. Deussing
- Molecular Neurogenetics, Max Planck Institute of Psychiatry, Munich, Germany
- Clinical Cooperation Group Molecular Neurogenetics, Institute of Developmental Genetics, Helmholtz Center Munich, Munich, Germany
| | - Thue W. Schwartz
- Department of Neuroscience and Pharmacology & Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen, Copenhagen, Denmark
| | - Karen L. Martinez
- Department of Chemistry & Nano-Science Center, University of Copenhagen, Copenhagen, Denmark
- * E-mail:
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