Motion estimation and correction in SPECT, PET and CT

Investigation of a deep learning-based reconstruction approach utilizing dual-view projection for myocardial perfusion SPECT imaging

Single-photon emission computed tomography (SPECT) is widely used in myocardial perfusion imaging (MPI) in clinic. However, conventional dual-head SPECT scanners require lengthy scanning times and gantry rotation, which limits the application of SPECT MPI. In this work, we proposed a deep learning-based approach to reconstruct dual-view projections, aiming to reduce acquisition time and enable non-rotational imaging for MPI based on conventional dual-head SPECT scanners. U-Net was adopted for the dual-view projection reconstruction. Initially, 2D U-Nets were used to evaluate various data organization schemes for dual-view projection as input, including paved projection, interleaved projection, and stacked projection, with and without an attenuation map. Subsequently, we developed 3D U-Nets using the optimal data organization scheme as input to further enhance reconstruction performance. The dataset consisted of a total of 116 SPECT/CT scans with 99mTc-tetrofosmin tracer acquired on a GE NM/CT 640 scanner. Reconstruction performance was assessed using quantitative metrices and absolute percentage errors, while the reconstruction images from the full-view projection were used as reference images. The 2D U-Nets provided reasonable transverse view images but exhibited slight axial discontinuity compared to the reference images, regardless of the data organization schemes. Incorporating the attenuation map reduced this axial discontinuity. Quantitatively, the 2D U-Net trained using both stacked projection and attenuation map achieved the best performance, with a normalized mean absolute error of 0.6%±0.3% and a structural similarity index measure (SSIM) of 0.93±0.04. The 3D U-Net further improved the performance with less axial discontinuity and a higher SSIM of 0.94±0.03. The localized absolute percentage errors were 1.8±16.8% and -2.0±6.3% in the left ventricular (LV) cavity and myocardium, respectively. We developed a deep learning-based image reconstruction approach for dual-view projection from a conventional SPECT scanner. The 3D U-Net, trained with the stacked projection with an attenuation map is effective for non-rotational imaging and could benefit dynamic myocardium perfusion imaging.

Detection and correction of translational motion in SPECT with exponential data consistency conditions

Objective.Rigid patient motion can cause artifacts in single photon emission computed tomography (SPECT) images, compromising the diagnosis and treatment planning. Exponential data consistency conditions (eDCCs) are mathematical equations describing the redundancy of exponential SPECT measurements. It has been recently shown that eDCCs can be used to detect patient motion in SPECT projections. This study aimed at developing a fully data-driven method based on eDCCs to estimate and correct for translational motion in SPECT.Approach.If all activity is encompassed inside a convex regionKof constant attenuation, eDCCs can be derived from SPECT projections and can be used to verify the pairwise consistency of these projections. Our method assumes a single patient translation between two detector gantry positions. The proposed method estimates both the three-dimensional shift and the motion index, i.e. the index of the first gantry position after motion occurred. The estimation minimizes the eDCCs between the subset of projections before the motion index and the subset of motion-corrected projections after the motion index.Results.We evaluated the proposed method using Monte Carlo simulated and experimental data of a NEMA IEC phantom and simulated projections of a liver patient. The method's robustness was assessed by applying various motion vectors and motion indices. Motion detection and correction with eDCCs were sensitive to movements above 3 mm. The accuracy of the estimation was below the 2.39 mm pixel spacing with good precision in all studied cases. The proposed method led to a significant improvement in the quality of reconstructed SPECT images. The activity recovery coefficient relative to the SPECT image without motion was above 90% on average over the six spheres of the NEMA IEC phantom and 97% for the liver patient. For example, for a(2,2,2)cm translation in the middle of the liver acquisition, the activity recovery coefficient was improved from 35% (non-corrected projections) to 99% (motion-corrected projections).Significance.The study proposed and demonstrated the good performance of translational motion detection and correction with eDCCs in SPECT acquisition data.

Head CT Scan Motion Artifact Correction via Diffusion-Based Generative Models

Head motion is a major source of image artifacts in head computed tomography (CT), degrading the image quality and impacting diagnosis. Image-domain-based motion correction is practical for routine use since it doesn't rely on hard-to-obtain CT projection data. However, existing convolutional neural network (CNN)-based methods tend to over-smooth images, particularly in cases of moderate to severe 3D motion artifacts. Motivated by the improved image quality and more stable training of diffusion-based generative models, we propose a novel 3D head CT motion correction approach based on conditional diffusion, named HeadMotion-EDM(HM-EDM). This approach has three features. Firstly, we utilize motion-corrupted images as the conditional input. Secondly, we leverage the advanced Elucidated Diffusion Model (EDM) framework, which integrates several pivotal engineering improvements in the diffusion model and significantly expedites the sampling process. Thirdly, we design an efficient 3D-patch-wise training method for 3D CT data. Comparative studies demonstrate that our approach surpasses CNN-based techniques as well as the denoising diffusion probabilistic model (DDPM) in both simulation and phantom studies. Furthermore, radiologists reviewed the results of applying HM-EDM to real-world portable head CT scans, showing its effectiveness in eliminating motion artifacts and improving diagnostic value.

A review of state-of-the-art resolution improvement techniques in SPECT imaging

Single photon emission computed tomography (SPECT), a technique capable of capturing functional and molecular information, has been widely adopted in theranostics applications across various fields, including cardiology, neurology, and oncology. The spatial resolution of SPECT imaging is relatively poor, which poses a significant limitation, especially the visualization of small lesions. The main factors affecting the limited spatial resolution of SPECT include projection sampling techniques, hardware and software. Both hardware and software innovations have contributed substantially to improved SPECT imaging quality. The present review provides an overview of state-of-the-art methods for improving spatial resolution in clinical and pre-clinical SPECT systems. It delves into advancements in detector design and modifications, projection sampling techniques, traditional reconstruction algorithm development and optimization, and the emerging role of deep learning. Hardware enhancements can result in SPECT systems that are both lighter and more compact, while also improving spatial resolution. Software innovations can mitigate the costs of hardware modifications. This survey offers a thorough overview of the rapid advancements in resolution enhancement techniques within the field of SPECT, with the objective of identifying the most recent trends. This is anticipated to facilitate further optimization and improvement of clinical systems, enabling the visualization of small lesions in the early stages of tumor detection, thereby enhancing accurate localization and facilitating both diagnostic imaging and radionuclide therapy, ultimately benefiting both clinicians and patients.

Radiation exposure in concurrent abdominoplevic and chest CT Scans: an analysis of overlap and clinical impact

This study investigated the additional radiation exposure, influencing factors, and clinical significance of overlappingZ-axis coverage in abdominopelvic CT scans performed consecutively after same-day chest CT scans. Data from 761 patients were analyzed, with measuring the total and overlappingZ-axis coverage of the portal venous phase in abdominopelvic CT scans. The average overlapping portion was 33.8 ± 12.1 mm, accounting for approximately 7.0% of the total scan length, contributing a dose-length product of 33.4 mGy*cm and an effective radiation dose of 0.5 mSv. Male sex and the total scan length were identified as significant factors influencing overlap (p= 0.002 and < 0.001, respectively). Despite overlapping scans frequently imaging the lower lungs, only 8.4% of abdominopelvic CT reports specifically mentioned lower lung abnormalities, indicating limited clinical utility. These findings underscore the importance of optimizing CT protocols to minimize the total length of the body covered in abdominopelvic scans, thereby reducing unnecessary radiation exposure during concurrent chest and abdominopelvic CT scans.

CT-sensitized nanoprobe for effective early diagnosis and treatment of pulmonary fibrosis

Early diagnosis is critical for providing a timely window for effective therapy in pulmonary fibrosis (PF); however, achieving this remains a significant challenge. The distinct honeycombing patterns observed in computed tomography (CT) for the primary diagnosis of PF are typically only visible in patients with moderate to severe disease, often leading to missed opportunities for early intervention. In this study, we developed a nanoprobe designed to accumulate at fibroblastic foci and loaded with the CT sensitizer iodide to enable effective early diagnosis of PF. An antibody fragment (Fab') targeting the platelet-derived growth factor receptor-α, which specifically binds to (myo)fibroblasts, was conjugated to the nanoprobe surface to enhance targeting of fibroblastic foci. Additionally, collagenase was employed to facilitate nanoprobe penetration by degrading the local collagen fibers within these foci. This approach led to significant accumulation of the CT sensitizer iodide in fibrotic lung tissues, resulting in enhanced CT imaging for the detection of fibroblastic foci and enabling early diagnosis of PF. Moreover, a dual-drug combination of oltipraz and rosiglitazone was co-loaded into the nanoparticles for the treatment of early-diagnosed PF. Remarkable therapeutic efficacy was observed in model mice with early PF using these nanoparticles. Our findings present a promising strategy for the early diagnosis of PF, potentially offering a valuable time window for effective treatment of this life-threatening disease.

Long Axial Field-of-View PET/CT: New Opportunities for Pediatric Imaging

The combined use of Positron Emission Tomography (PET) and Computed Tomography (CT) has become increasingly vital for diagnosing and managing oncological and infectious diseases in pediatric patients. The introduction of long axial field-of-view (LAFOV) PET/CT scanners, also known as "Total Body PET/CT," marks a significant advancement in nuclear medicine. This new technology enables faster pediatric imaging with substantially reduced radiation exposure and essentially eliminates the need for sedation, addressing previous critical concerns in pediatric imaging. This review will explore the applications and challenges of LAFOV PET/CT in pediatric imaging, highlight the benefits observed at two Danish hospitals, and evaluate its potential to transform the management of pediatric patients.

Recent Breakthroughs in PET-CT Multimodality Imaging: Innovations and Clinical Impact

This review presents a detailed examination of the most recent advancements in positron emission tomography-computed tomography (PET-CT) multimodal imaging over the past five years. The fusion of PET and CT technologies has revolutionized medical imaging, offering unprecedented insights into both anatomical structure and functional processes. The analysis delves into key technological innovations, including advancements in image reconstruction, data-driven gating, and time-of-flight capabilities, highlighting their impact on enhancing diagnostic accuracy and clinical outcomes. Illustrative case studies underscore the transformative role of PET-CT in lesion detection, disease characterization, and treatment response evaluation. Additionally, the review explores future prospects and challenges in PET-CT, advocating for the integration and evaluation of emerging technologies to improve patient care. This comprehensive synthesis aims to equip healthcare professionals, researchers, and industry stakeholders with the knowledge and tools necessary to navigate the evolving landscape of PET-CT multimodal imaging.

Explainable AI for automated respiratory misalignment detection in PET/CT imaging

Purpose.Positron emission tomography (PET) image quality can be affected by artifacts emanating from PET, computed tomography (CT), or artifacts due to misalignment between PET and CT images. Automated detection of misalignment artifacts can be helpful both in data curation and in facilitating clinical workflow. This study aimed to develop an explainable machine learning approach to detect misalignment artifacts in PET/CT imaging.Approach.This study included 1216 PET/CT images. All images were visualized and images with respiratory misalignment artifact (RMA) detected. Using previously trained models, four organs including the lungs, liver, spleen, and heart were delineated on PET and CT images separately. Data were randomly split into cross-validation (80%) and test set (20%), then two segmentations performed on PET and CT images were compared and the comparison metrics used as predictors for a random forest framework in a 10-fold scheme on cross-validation data. The trained models were tested on 20% test set data. The model's performance was calculated in terms of specificity, sensitivity, F1-Score and area under the curve (AUC).Main results.Sensitivity, specificity, and AUC of 0.82, 0.85, and 0.91 were achieved in ten-fold data split. F1_score, sensitivity, specificity, and AUC of 84.5 vs 82.3, 83.9 vs 83.8, 87.7 vs 83.5, and 93.2 vs 90.1 were achieved for cross-validation vs test set, respectively. The liver and lung were the most important organs selected after feature selection.Significance.We developed an automated pipeline to segment four organs from PET and CT images separately and used the match between these segmentations to decide about the presence of misalignment artifact. This methodology may follow the same logic as a reader detecting misalignment through comparing the contours of organs on PET and CT images. The proposed method can be used to clean large datasets or integrated into a clinical scanner to indicate artifactual cases.

Data driven surrogate signal extraction for dynamic PET using selective PCA: time windows versus the combination of components

Objective.Respiratory motion correction is beneficial in positron emission tomography (PET), as it can reduce artefacts caused by motion and improve quantitative accuracy. Methods of motion correction are commonly based on a respiratory trace obtained through an external device (like the real time position management system) or a data driven method, such as those based on dimensionality reduction techniques (for instance principal component analysis (PCA)). PCA itself being a linear transformation to the axis of greatest variation. Data driven methods have the advantage of being non-invasive, and can be performed post-acquisition. However, their main downside being that they are adversely affected by the tracer kinetics of the dynamic PET acquisition. Therefore, they are mostly limited to static PET acquisitions. This work seeks to extend on existing PCA-based data-driven motion correction methods, to allow for their applicability to dynamic PET imaging.Approach.The methods explored in this work include; a moving window approach (similar to the Kinetic Respiratory Gating method from Schleyeret al(2014)), extrapolation of the principal component from later time points to earlier time points, and a method to score, select, and combine multiple respiratory components. The resulting respiratory traces were evaluated on 22 data sets from a dynamic [18F]-FDG study on patients with idiopathic pulmonary fibrosis. This was achieved by calculating their correlation with a surrogate signal acquired using a real time position management system.Main results.The results indicate that all methods produce better surrogate signals than when applying conventional PCA to dynamic data (for instance, a higher correlation with a gold standard respiratory trace). Extrapolating a late time point principal component produced more promising results than using a moving window. Scoring, selecting, and combining components held benefits over all other methods.Significance.This work allows for the extraction of a surrogate signal from dynamic PET data earlier in the acquisition and with a greater accuracy than previous work. This potentially allows for numerous other methods (for instance, respiratory motion correction) to be applied to this data (when they otherwise could not be previously used).

Verification of the accuracy of dynamic navigation for conventional and mouthpiece methods: in vivo study

BACKGROUND

Dynamic navigation for implant placement is becoming popular under the concept of top-down treatment. The purpose of this study is to verify the accuracy of a dynamic navigation system for implant placement.

METHODS

Implant placement was performed on 38 patients using 50 implant fixtures. Patients in group C were treated using a conventional method, in which thermoplastic clips were fixed to the teeth, and patients in group M were treated using thermoplastic clips fixed to a mouthpiece attached to the teeth. The groups were compared to verify whether an accuracy difference existed. A treatment planning support program for dental implants was used to superimpose the postoperative computed tomography data on the preoperative implant design data to measure the entry point, apex point, and angular deviation.

RESULTS

The accuracy of group C was 1.36 ± 0.51 mm for entry point, 1.30 ± 0.59 mm for apex point, and 3.20 ± 0.74° for angular deviation. The accuracy of group M was 1.06 ± 0.31 mm for the entry point, 1.02 ± 0.30 mm for the apex point, and 2.91 ± 0.97° for angular deviation. Significant differences were observed in the entry and apex points between the two groups.

CONCLUSIONS

The results indicate that group M exhibited better accuracy than group C, indicating that the stability of the thermoplastic clip is important for ensuring the accuracy of the dynamic navigation system. No previous studies have verified the accuracy of this system using the mouthpiece method, and additional data is required to confirm its accuracy for dental implant placement. The mouthpiece method improves the accuracy of implant placement and provides a safer implant treatment than the conventional method.

TRIAL REGISTRATION

University hospital Medical Information Network Clinical Trials Registry (UMIN-CTR), Registration Number: UMIN000051949, URL: https://center6.umin.ac.jp/cgi-open-bin/ctr_e/ctr_view_his.cgi on August 21, 2023.

Evaluation of Motion Artifact Correction Technique for Cone-Beam Computed Tomography Image Considering Blood Vessel Geometry

Background: In this study, we present a quantitative method to evaluate the motion artifact correction (MAC) technique through the morphological analysis of blood vessels in the images before and after MAC. Methods: Cone-beam computed tomography (CBCT) scans of 37 patients who underwent transcatheter chemoembolization were obtained, and images were reconstructed with and without the MAC technique. First, two interventional radiologists selected the blood vessels corrected by MAC. We devised a motion-corrected index (MCI) metric that analyzed the morphology of blood vessels in 3D space using information on the centerline of blood vessels, and the blood vessels selected by the interventional radiologists were quantitatively evaluated using MCI. In addition, these blood vessels were qualitatively evaluated by two interventional radiologists. To validate the effectiveness of the devised MCI, we compared the MCI values in a blood vessel corrected by MAC and one non-corrected by MAC. Results: The visual evaluation revealed that motion correction was found in the images of 23 of 37 patients (62.2%), and a performance evaluation of MAC was performed with 54 blood vessels in 23 patients. The visual grading analysis score was 1.56 ± 0.57 (radiologist 1) and 1.56 ± 0.63 (radiologist 2), and the proposed MCI was 0.67 ± 0.11, indicating that the vascular morphology was well corrected by the MAC. Conclusions: We verified that our proposed method is useful for evaluating the MAC technique of CBCT, and the MAC technique can correct the blood vessels distorted by the patient's movement and respiration.

Motion correction of wide-detector 4DCT images for cardiac resynchronization therapy planning

BACKGROUND

Lead placement at the latest mechanically activated left ventricle (LV) segments is strongly correlated with response to cardiac resynchronization therapy (CRT). We demonstrate the feasibility of a cardiac 4DCT motion correction algorithm (ResyncCT) in estimating LV mechanical activation for guiding lead placement in CRT.

METHODS

Subjects with full cardiac cycle 4DCT images acquired using a wide-detector CT scanner for CRT planning/upgrade were included. 4DCT images exhibited motion artifact-induced false-dyssynchrony, hindering LV mechanical activation time estimation. Motion-corrupted images were processed with ResyncCT to yield motion-corrected images. Time to onset of shortening (TOS) was estimated in each of 72 endocardial segments. A false-dyssynchrony index (FDI) was used to quantify the extent of motion artifacts in the uncorrected and the ResyncCT images. After motion correction, the change in classification of LV free-wall segments as optimal target sites for lead placement was investigated.

RESULTS

Twenty subjects (70.7 ​± ​13.9 years, 6 female) were analyzed. Motion artifacts in the ResyncCT-processed images were significantly reduced (FDI: 28.9 ​± ​9.3 ​% vs 47.0 ​± ​6.0 ​%, p ​< ​0.001). In 10 (50 ​%) subjects, ResyncCT motion correction yielded statistically different TOS estimates (p ​< ​0.05). Additionally, 43 ​% of LV free-wall segments were reclassified as optimal target sites for lead placement after motion correction.

CONCLUSIONS

ResyncCT significantly reduced motion artifacts in wide-detector cardiac 4DCT images, yielded statistically different time to onset of shortening estimates, and changed the location of optimal target sites for lead placement. These results highlight the potential utility of ResyncCT motion correction in CRT planning when using wide-detector 4DCT imaging.

Motion-correction strategies for enhancing whole-body PET imaging

Positron Emission Tomography (PET) is a powerful medical imaging technique widely used for detection and monitoring of disease. However, PET imaging can be adversely affected by patient motion, leading to degraded image quality and diagnostic capability. Hence, motion gating schemes have been developed to monitor various motion sources including head motion, respiratory motion, and cardiac motion. The approaches for these techniques have commonly come in the form of hardware-driven gating and data-driven gating, where the distinguishing aspect is the use of external hardware to make motion measurements vs. deriving these measures from the data itself. The implementation of these techniques helps correct for motion artifacts and improves tracer uptake measurements. With the great impact that these methods have on the diagnostic and quantitative quality of PET images, much research has been performed in this area, and this paper outlines the various approaches that have been developed as applied to whole-body PET imaging.

Inverse radon transform with deep learning: an application in cardiac motion correction

Objective. This paper addresses performing inverse radon transform (IRT) with artificial neural network (ANN) or deep learning, simultaneously with cardiac motion correction (MC). The suggested application domain is cardiac image reconstruction in emission or transmission tomography where IRT is relevant. Our main contribution is in proposing an ANN architecture that is particularly suitable for this purpose.Approach. We validate our approach with two types of datasets. First, we use an abstract object that looks like a heart to simulate motion-blurred radon transform. With the known ground truth in hand, we then train our proposed ANN architecture and validate its effectiveness in MC. Second, we used human cardiac gated datasets for training and validation of our approach. The gating mechanism bins data over time using the electro-cardiogram (ECG) signals for cardiac motion correction.Main results. We have shown that trained ANNs can perform motion-corrected image reconstruction directly from a motion-corrupted sinogram. We have compared our model against two other known ANN-based approaches.Significance. Our method paves the way for eliminating any need for hardware gating in medical imaging.

Innovations in Small-Animal PET Instrumentation

Biomedical research has long relied on small-animal studies to elucidate disease process and develop new medical treatments. The introduction of in vivo functional imaging technology, such as PET, has allowed investigators to peer inside their subjects and follow disease progression longitudinally as well as improve understanding of normal biological processes. Recent developments in CRISPR, immuno-PET, and high-resolution in vivo imaging have only increased the importance of small-animal, or preclinical, PET imaging. Other drivers of preclinical PET innovation include new combinations of imaging technologies, such as PET/MR imaging, which require changes to PET hardware.

Current and Future Use of Long Axial Field-of-View Positron Emission Tomography/Computed Tomography Scanners in Clinical Oncology

The latest technical development in the field of positron emission tomography/computed tomography (PET/CT) imaging has been the extension of the PET axial field-of-view. As a result of the increased number of detectors, the long axial field-of-view (LAFOV) PET systems are not only characterized by a larger anatomical coverage but also by a substantially improved sensitivity, compared with conventional short axial field-of-view PET systems. In clinical practice, this innovation has led to the following optimization: (1) improved overall image quality, (2) decreased duration of PET examinations, (3) decreased amount of radioactivity administered to the patient, or (4) a combination of any of the above. In this review, novel applications of LAFOV PET in oncology are highlighted and future directions are discussed.

Total-Body Positron Emission Tomography: Adding New Perspectives to Cardiovascular Research

The recent advent of positron emission tomography (PET) scanners that can image the entire human body opens up intriguing possibilities for cardiovascular research and future clinical applications. These new systems permit radiotracer kinetics to be measured in all organs simultaneously. They are particularly well suited to study cardiovascular disease and its effects on the entire body. They could also play a role in quantitatively measuring physiologic, metabolic, and immunologic responses in healthy individuals to a variety of stressors and lifestyle interventions, and may ultimately be instrumental for evaluating novel therapeutic agents and their molecular effects across different tissues. In this review, we summarize recent progress in PET technology and methodology, discuss several emerging cardiovascular applications for total-body PET, and place this in the context of multiorgan and systems medicine. Finally, we discuss opportunities that will be enabled by the technology, while also pointing to some of the challenges that still need to be addressed.

Fast Reconstruction for Deep Learning PET Head Motion Correction

Head motion correction is an essential component of brain PET imaging, in which even motion of small magnitude can greatly degrade image quality and introduce artifacts. Building upon previous work, we propose a new head motion correction framework taking fast reconstructions as input. The main characteristics of the proposed method are: (i) the adoption of a high-resolution short-frame fast reconstruction workflow; (ii) the development of a novel encoder for PET data representation extraction; and (iii) the implementation of data augmentation techniques. Ablation studies are conducted to assess the individual contributions of each of these design choices. Furthermore, multi-subject studies are conducted on an 18F-FPEB dataset, and the method performance is qualitatively and quantitatively evaluated by MOLAR reconstruction study and corresponding brain Region of Interest (ROI) Standard Uptake Values (SUV) evaluation. Additionally, we also compared our method with a conventional intensity-based registration method. Our results demonstrate that the proposed method outperforms other methods on all subjects, and can accurately estimate motion for subjects out of the training set. All code is publicly available on GitHub: https://github.com/OnofreyLab/dl-hmc_fast_recon_miccai2023.

Unsupervised deep learning framework for data-driven gating in positron emission tomography

BACKGROUND

Physiological motion, such as respiratory motion, has become a limiting factor in the spatial resolution of positron emission tomography (PET) imaging as the resolution of PET detectors continue to improve. Motion-induced misregistration between PET and CT images can also cause attenuation correction artifacts. Respiratory gating can be used to freeze the motion and to reduce motion induced artifacts.

PURPOSE

In this study, we propose a robust data-driven approach using an unsupervised deep clustering network that employs an autoencoder (AE) to extract latent features for respiratory gating.

METHODS

We first divide list-mode PET data into short-time frames. The short-time frame images are reconstructed without attenuation, scatter, or randoms correction to avoid attenuation mismatch artifacts and to reduce image reconstruction time. The deep AE is then trained using reconstructed short-time frame images to extract latent features for respiratory gating. No additional data are required for the AE training. K-means clustering is subsequently used to perform respiratory gating based on the latent features extracted by the deep AE. The effectiveness of our proposed Deep Clustering method was evaluated using physical phantom and real patient datasets. The performance was compared against phase gating based on an external signal (External) and image based principal component analysis (PCA) with K-means clustering (Image PCA).

RESULTS

The proposed method produced gated images with higher contrast and sharper myocardium boundaries than those obtained using the External gating method and Image PCA. Quantitatively, the gated images generated by the proposed Deep Clustering method showed larger center of mass (COM) displacement and higher lesion contrast than those obtained using the other two methods.

CONCLUSIONS

The effectiveness of our proposed method was validated using physical phantom and real patient data. The results showed our proposed framework could provide superior gating than the conventional External method and Image PCA.

Cross-Attention for Improved Motion Correction in Brain PET

Head movement during long scan sessions degrades the quality of reconstruction in positron emission tomography (PET) and introduces artifacts, which limits clinical diagnosis and treatment. Recent deep learning-based motion correction work utilized raw PET list-mode data and hardware motion tracking (HMT) to learn head motion in a supervised manner. However, motion prediction results were not robust to testing subjects outside the training data domain. In this paper, we integrate a cross-attention mechanism into the supervised deep learning network to improve motion correction across test subjects. Specifically, cross-attention learns the spatial correspondence between the reference images and moving images to explicitly focus the model on the most correlative inherent information - the head region the motion correction. We validate our approach on brain PET data from two different scanners: HRRT without time of flight (ToF) and mCT with ToF. Compared with traditional and deep learning benchmarks, our network improved the performance of motion correction by 58% and 26% in translation and rotation, respectively, in multi-subject testing in HRRT studies. In mCT studies, our approach improved performance by 66% and 64% for translation and rotation, respectively. Our results demonstrate that cross-attention has the potential to improve the quality of brain PET image reconstruction without the dependence on HMT. All code will be released on GitHub: https://github.com/OnofreyLab/dl_hmc_attention_mlcn2023.

Method for comparison of data driven gating algorithms in emission tomography

Objective.Multiple algorithms have been proposed for data driven gating (DDG) in single photon emission computed tomography (SPECT) and have successfully been applied to myocardial perfusion imaging (MPI). Application of DDG to acquisition types other than SPECT MPI has not been demonstrated so far, as limitations and pitfalls of current methods are unknown.Approach.We create a comprehensive set of phantoms simulating the influence of different motion artifacts, view angles, moving objects, contrast, and count levels in SPECT. We perform Monte Carlo simulation of the phantoms, allowing the characterization of DDG algorithms using quantitative metrics derived from the data and evaluate the Center of Light (COL) and Laplacian Eigenmaps methods as sample DDG algorithms.Main results.View angle, object size, count rate density, and contrast influence the accuracy of both DDG methods. Moreover, the ability to extract the respiratory motion in the phantom was shown to correlate with the contrast of the moving feature to the background, the signal to noise ratio, and the noise in the data.Significance.We showed that reporting the average correlation to an external physical reference signal per acquisition is not sufficient to characterize DDG methods. Assessing DDG methods on a view-by-view basis using the simulations and metrics from this work could enable the identification of pitfalls of current methods, and extend their application to acquisitions beyond SPECT MPI.

Evaluation of Data-Driven Rigid Motion Correction in Clinical Brain PET Imaging

Head motion during brain PET imaging can significantly degrade the quality of the reconstructed image, leading to reduced diagnostic value and inaccurate quantitation. A fully data-driven motion correction approach was recently demonstrated to produce highly accurate motion estimates (<1 mm) with high temporal resolution (≥1 Hz), which can then be used for a motion-corrected reconstruction. This can be applied retrospectively with no impact on the clinical image acquisition protocol. We present a reader-based evaluation and an atlas-based quantitative analysis of this motion correction approach within a clinical cohort. Methods: Clinical patient data were collected over 2019-2020 and processed retrospectively. Motion was estimated using image-based registration on reconstructions of ultrashort frames (0.6-1.8 s), after which list-mode reconstructions that were fully motion-corrected were performed. Two readers graded the motion-corrected and uncorrected reconstructions. An atlas-based quantitative analysis was performed. Paired Wilcoxon tests were used to test for significant differences in reader scores and SUVs between reconstructions. The Levene test was used to determine whether motion correction had a greater impact on quantitation in the presence of motion than when motion was low. Results: Fifty standard clinical 18F-FDG brain PET datasets (age range, 13-83 y; mean ± SD, 59 ± 20 y; 27 women) from 3 scanners were collected. The reader study showed a significantly different, diagnostically relevant improvement by motion correction when motion was present (P = 0.02) and no impact in low-motion cases. Eight percent of all datasets improved from diagnostically unacceptable to acceptable. The atlas-based analysis demonstrated a significant difference between the motion-corrected and uncorrected reconstructions in cases of high motion for 7 of 8 regions of interest (P < 0.05). Conclusion: The proposed approach to data-driven motion estimation and correction demonstrated a clinically significant impact on brain PET image reconstruction.

Motion correction and its impact on quantification in dynamic total-body 18F-fluorodeoxyglucose PET

Background

The total-body positron emission tomography (PET) scanner provides an unprecedented opportunity to scan the whole body simultaneously, thanks to its long axial field of view and ultrahigh temporal resolution. To fully utilize this potential in clinical settings, a dynamic scan would be necessary to obtain the desired kinetic information from scan data. However, in a long dynamic acquisition, patient movement can degrade image quality and quantification accuracy.

Methods

In this work, we demonstrated a motion correction framework and its importance in dynamic total-body FDG PET imaging. Dynamic FDG scans from 12 subjects acquired on a uEXPLORER PET/CT were included. In these subjects, 7 are healthy subjects and 5 are those with tumors in the thorax and abdomen. All scans were contaminated by motion to some degree, and for each the list-mode data were reconstructed into 1-min frames. The dynamic frames were aligned to a reference position by sequentially registering each frame to its previous neighboring frame. We parametrized the motion fields in-between frames as diffeomorphism, which can map the shape change of the object smoothly and continuously in time and space. Diffeomorphic representations of motion fields were derived by registering neighboring frames using large deformation diffeomorphic metric matching. When all pairwise registrations were completed, the motion field at each frame was obtained by concatenating the successive motion fields and transforming that frame into the reference position. The proposed correction method was labeled SyN-seq. The method that was performed similarly, but aligned each frame to a designated middle frame, was labeled as SyN-mid. Instead of SyN, the method that performed the sequential affine registration was labeled as Aff-seq. The original uncorrected images were labeled as NMC. Qualitative and quantitative analyses were performed to compare the performance of the proposed method with that of other correction methods and uncorrected images.

Results

The results indicated that visual improvement was achieved after correction of the SUV images for the motion present period, especially in the brain and abdomen. For subjects with tumors, the average improvement in tumor SUVmean was 5.35 ± 4.92% (P = 0.047), with a maximum improvement of 12.89%. An overall quality improvement in quantitative K_i images was also observed after correction; however, such improvement was less obvious in K₁ images. Sampled time–activity curves in the cerebral and kidney cortex were less affected by the motion after applying the proposed correction. Mutual information and dice coefficient relative to the reference also demonstrated that SyN-seq improved the alignment between frames over non-corrected images (P = 0.003 and P = 0.011). Moreover, the proposed correction successfully reduced the inter-subject variability in K_i quantifications (11.8% lower in sampled organs). Subjective assessment by experienced radiologists demonstrated consistent results for both SUV images and K_i images.

Conclusion

To conclude, motion correction is important for image quality in dynamic total-body PET imaging. We demonstrated a correction framework that can effectively reduce the effect of random body movements on dynamic images and their associated quantification. The proposed correction framework can potentially benefit applications that require total-body assessment, such as imaging the brain-gut axis and systemic diseases.

Comparison between a dual-time-window protocol and other simplified protocols for dynamic total-body 18F-FDG PET imaging

PURPOSE

Efforts have been made both to avoid invasive blood sampling and to shorten the scan duration for dynamic positron emission tomography (PET) imaging. A total-body scanner, such as the uEXPLORER PET/CT, can relieve these challenges through the following features: First, the whole-body coverage allows for noninvasive input function from the aortic arteries; second, with a dramatic increase in sensitivity, image quality can still be maintained at a high level even with a shorter scan duration than usual. We implemented a dual-time-window (DTW) protocol for a dynamic total-body 18F-FDG PET scan to obtain multiple kinetic parameters. The DTW protocol was then compared to several other simplified quantification methods for total-body FDG imaging that were proposed for conventional setup.

METHODS

The research included 28 patient scans performed on an uEXPLORER PET/CT. By discarding the corresponding data in the middle of the existing full 60-min dynamic scan, the DTW protocol was simulated. Nonlinear fitting was used to estimate the missing data in the interval. The full input function was obtained from 15 subjects using a hybrid approach with a population-based image-derived input function. Quantification was carried out in three areas: the cerebral cortex, muscle, and tumor lesion. Micro- and macro-kinetic parameters for different scan durations were estimated by assuming an irreversible two-tissue compartment model. The visual performance of parametric images and region of interest-based quantification in several parameters were evaluated. Furthermore, simplified quantification methods (DTW, Patlak, fractional uptake ratio [FUR], and standardized uptake value [SUV]) were compared for similarity to the reference net influx rate Ki.

RESULTS

Ki and K1 derived from the DTW protocol showed overall good consistency (P < 0.01) with the reference from the 60-min dynamic scan with 10-min early scan and 5-min late scan (Ki correlation: 0.971, 0.990, and 0.990; K1 correlation: 0.820, 0.940, and 0.975 in the cerebral cortex, muscle, and tumor lesion, respectively). Similar correlationss were found for other micro-parameters. The DTW protocol had the lowest bias relative to standard Ki than any of the quantification methods, followed by FUR and Patlak. SUV had the weakest correlation with Ki. The whole-body Ki and K1 images generated by the DTW protocol were consistent with the reference parametric images.

CONCLUSIONS

Using the DTW protocol, the dynamic total-body FDG scan time can be reduced to 15 min while obtaining accurate Ki and K1 quantification and acceptable visual performance in parametric images. However, the trade-off between quantification accuracy and protocol implementation feasibility must be considered in practice. We recommend that the DTW protocol be used when the clinical task requires reliable visual assessment or quantifying multiple micro-parameters; FUR with a hybrid input function may be a more feasible approach to quantifying regional metabolic rate with a known lesion position or organs of interest.

Data-driven head motion correction for PET using time-of-flight and positron emission particle tracking techniques

Objectives

Positron emission tomography (PET) is susceptible to patient movement during a scan. Head motion is a continuing problem for brain PET imaging and diagnostic assessments. Physical head restraints and external motion tracking systems are most commonly used to address to this issue. Data-driven methods offer substantial advantages, such as retroactive processing but typically require manual interaction for robustness. In this work, we introduce a time-of-flight (TOF) weighted positron emission particle tracking (PEPT) algorithm that facilitates fully automated, data-driven head motion detection and subsequent automated correction of the raw listmode data.

Materials methods

We used our previously published TOF-PEPT algorithm Dustin Osborne et al. (2017), Tasmia Rahman Tumpa et al., Tasmia Rahman Tumpa et al. (2021) to automatically identify frames where the patient was near-motionless. The first such static frame was used as a reference to which subsequent static frames were registered. The underlying rigid transformations were estimated using weak radioactive point sources placed on radiolucent glasses worn by the patient. Correction of raw event data were achieved by tracking the point sources in the listmode data which was then repositioned to allow reconstruction of a single image. To create a “gold standard” for comparison purposes, frame-by-frame image registration based correction was implemented. The original listmode data was used to reconstruct an image for each static frame detected by our algorithm and then applying manual landmark registration and external software to merge these into a single image.

Results

We report on five patient studies. The TOF-PEPT algorithm was configured to detect motion using a 500 ms window. Our event-based correction produced images that were visually free of motion artifacts. Comparison of our algorithm to a frame-based image registration approach produced results that were nearly indistinguishable. Quantitatively, Jaccard similarity indices were found to be in the range of 85-98% for the former and 84-98% for the latter when comparing the static frame images with the reference frame counterparts.

Discussion

We have presented a fully automated data-driven method for motion detection and correction of raw listmode data. Easy to implement, the approach achieved high temporal resolution and reliable performance for head motion correction. Our methodology provides a mechanism by which patient motion incurred during imaging can be assessed and corrected post hoc.

Performance evaluation of dedicated brain PET scanner with motion correction system

OBJECTIVE

Various motion correction (MC) algorithms for positron emission tomography (PET) have been proposed to accelerate the diagnostic performance and research in brain activity and neurology. We have incorporated MC system-based optical motion tracking into the brain-dedicated time-of-flight PET scanner. In this study, we evaluate the performance characteristics of the developed PET scanner when performing MC in accordance with the standards and guidelines for the brain PET scanner.

METHODS

We evaluate the spatial resolution, scatter fraction, count rate characteristics, sensitivity, and image quality of PET images. The MC evaluation is measured in terms of the spatial resolution and image quality that affect movement.

RESULTS

In the basic performance evaluation, the average spatial resolution by iterative reconstruction was 2.2 mm at 10 mm offset position. The measured peak noise equivalent count rate was 38.0 kcps at 16.7 kBq/mL. The scatter fraction and system sensitivity were 43.9% and 22.4 cps/(Bq/mL), respectively. The image contrast recovery was between 43.2% (10 mm sphere) and 72.0% (37 mm sphere). In the MC performance evaluation, the average spatial resolution was 2.7 mm at 10 mm offset position, when the phantom stage with the point source translates to ± 15 mm along the y-axis. The image contrast recovery was between 34.2 % (10 mm sphere) and 66.8 % (37 mm sphere).

CONCLUSIONS

The reconstructed images using MC were restored to their nearly identical state as those at rest. Therefore, it is concluded that this scanner can observe more natural brain activity.

3D Kinect Camera Scheme with Time-Series Deep-Learning Algorithms for Classification and Prediction of Lung Tumor Motility

This paper proposes a time-series deep-learning 3D Kinect camera scheme to classify the respiratory phases with a lung tumor and predict the lung tumor displacement. Specifically, the proposed scheme is driven by two time-series deep-learning algorithmic models: the respiratory-phase classification model and the regression-based prediction model. To assess the performance of the proposed scheme, the classification and prediction models were tested with four categories of datasets: patient-based datasets with regular and irregular breathing patterns; and pseudopatient-based datasets with regular and irregular breathing patterns. In this study, 'pseudopatients' refer to a dynamic thorax phantom with a lung tumor programmed with varying breathing patterns and breaths per minute. The total accuracy of the respiratory-phase classification model was 100%, 100%, 100%, and 92.44% for the four dataset categories, with a corresponding mean squared error (MSE), mean absolute error (MAE), and coefficient of determination (R²) of 1.2-1.6%, 0.65-0.8%, and 0.97-0.98, respectively. The results demonstrate that the time-series deep-learning classification and regression-based prediction models can classify the respiratory phases and predict the lung tumor displacement with high accuracy. Essentially, the novelty of this research lies in the use of a low-cost 3D Kinect camera with time-series deep-learning algorithms in the medical field to efficiently classify the respiratory phase and predict the lung tumor displacement.

Hepatic Positron Emission Tomography: Applications in Metabolism, Haemodynamics and Cancer

Evaluating in vivo the metabolic rates of the human liver has been a challenge due to its unique perfusion system. Positron emission tomography (PET) represents the current gold standard for assessing non-invasively tissue metabolic rates in vivo. Here, we review the existing literature on the assessment of hepatic metabolism, haemodynamics and cancer with PET. The tracer mainly used in metabolic studies has been [¹⁸F]2-fluoro-2-deoxy-D-glucose (¹⁸F-FDG). Its application not only enables the evaluation of hepatic glucose uptake in a variety of metabolic conditions and interventions, but based on the kinetics of ¹⁸F-FDG, endogenous glucose production can also be assessed. 14(R,S)-[¹⁸F]fluoro-6-thia-Heptadecanoic acid (¹⁸F-FTHA), ¹¹C-Palmitate and ¹¹C-Acetate have also been applied for the assessment of hepatic fatty acid uptake rates (¹⁸F-FTHA and ¹¹C-Palmitate) and blood flow and oxidation (¹¹C-Acetate). Oxygen-15 labelled water (¹⁵O-H₂O) has been used for the quantification of hepatic perfusion. ¹⁸F-FDG is also the most common tracer used for hepatic cancer diagnostics, whereas ¹¹C-Acetate has also shown some promising applications in imaging liver malignancies. The modelling approaches used to analyse PET data and also the challenges in utilizing PET in the assessment of hepatic metabolism are presented.

Evaluating different methods of MR-based motion correction in simultaneous PET/MR using a head phantom moved by a robotic system

Background

Due to comparatively long measurement times in simultaneous positron emission tomography and magnetic resonance (PET/MR) imaging, patient movement during the measurement can be challenging. This leads to artifacts which have a negative impact on the visual assessment and quantitative validity of the image data and, in the worst case, can lead to misinterpretations. Simultaneous PET/MR systems allow the MR-based registration of movements and enable correction of the PET data. To assess the effectiveness of motion correction methods, it is necessary to carry out measurements on phantoms that are moved in a reproducible way. This study explores the possibility of using such a phantom-based setup to evaluate motion correction strategies in PET/MR of the human head.

Method

An MR-compatible robotic system was used to generate rigid movements of a head-like phantom. Different tools, either from the manufacturer or open-source software, were used to estimate and correct for motion based on the PET data itself (SIRF with SPM and NiftyReg) and MR data acquired simultaneously (e.g. MCLFIRT, BrainCompass). Different motion estimates were compared using data acquired during robot-induced motion. The effectiveness of motion correction of PET data was evaluated by determining the segmented volume of an activity-filled flask inside the phantom. In addition, the segmented volume was used to determine the centre-of-mass and the change in maximum activity concentration.

Results

The results showed a volume increase between 2.7 and 36.3% could be induced by the experimental setup depending on the motion pattern. Both, BrainCompass and MCFLIRT, produced corrected PET images, by reducing the volume increase to 0.7–4.7% (BrainCompass) and to -2.8–0.4% (MCFLIRT). The same was observed for example for the centre-of-mass, where the results show that MCFLIRT (0.2–0.6 mm after motion correction) had a smaller deviation from the reference position than BrainCompass (0.5–1.8 mm) for all displacements.

Conclusions

The experimental setup is suitable for the reproducible generation of movement patterns. Using open-source software for motion correction is a viable alternative to the vendor-provided motion-correction software.

Supplementary Information

The online version contains supplementary material available at 10.1186/s40658-022-00442-6.

PET respiratory motion correction: quo vadis?

Positron emission tomography (PET) respiratory motion correction has been a subject of great interest for the last twenty years, prompted mainly by the development of multimodality imaging devices such as PET/computed tomography (CT) and PET/magnetic resonance imaging (MRI). PET respiratory motion correction involves a number of steps including acquisition synchronization, motion estimation and finally motion correction. The synchronization steps include the use of different external device systems or data driven approaches which have been gaining ground over the last few years. Patient specific or generic motion models using the respiratory synchronized datasets can be subsequently derived and used for correction either in the image space or within the image reconstruction process. Similar overall approaches can be considered and have been proposed for both PET/CT and PET/MRI devices. Certain variations in the case of PET/MRI include the use of MRI specific sequences for the registration of respiratory motion information. The proposed review includes a comprehensive coverage of all these areas of development in field of PET respiratory motion for different multimodality imaging devices and approaches in terms of synchronization, estimation and subsequent motion correction. Finally, a section on perspectives including the potential clinical usage of these approaches is included.

Motion in nuclear cardiology imaging: types, artifacts, detection and correction techniques

In this paper, the authors review the field of motion detection and correction in nuclear cardiology with single photon emission computed tomography (SPECT) and positron emission tomography (PET) imaging systems. We start with a brief overview of nuclear cardiology applications and description of SPECT and PET imaging systems, then explaining the different types of motion and their related artefacts. Moreover, we classify and describe various techniques for motion detection and correction, discussing their potential advantages including reference to metrics and tasks, particularly towards improvements in image quality and diagnostic performance. In addition, we emphasize limitations encountered in different motion detection and correction methods that may challenge routine clinical applications and diagnostic performance.

Low-Dose PET Imaging of Tumors in Lung and Liver Regions Using Internal Motion Estimation

Motion estimation and compensation are necessary for improvement of tumor quantification analysis in positron emission tomography (PET) images. The aim of this study was to propose adaptive PET imaging with internal motion estimation and correction using regional artificial evaluation of tumors injected with low-dose and high-dose radiopharmaceuticals. In order to assess internal motion, molecular sieves imitating tumors were loaded with ¹⁸F and inserted into the lung and liver regions in rats. All models were classified into two groups, based on the injected radiopharmaceutical activity, to compare the effect of tumor intensity. The PET study was performed with injection of F-18 fluorodeoxyglucose (¹⁸F-FDG). Respiratory gating was carried out by external trigger device. Count, signal to noise ratio (SNR), contrast and full width at half maximum (FWHM) were measured in artificial tumors in gated images. Motion correction was executed by affine transformation with estimated internal motion data. Monitoring data were different from estimated motion. Contrast in the low-activity group was 3.57, 4.08 and 6.19, while in the high-activity group it was 10.01, 8.36 and 6.97 for static, 4 bin and 8 bin images, respectively. The results of the lung target in 4 bin and the liver target in 8 bin showed improvement in FWHM and contrast with sufficient SNR. After motion correction, FWHM was improved in both regions (lung: 24.56%, liver: 10.77%). Moreover, with the low dose of radiopharmaceuticals the PET image visualized specific accumulated radiopharmaceutical areas in the liver. Therefore, low activity in PET images should undergo motion correction before quantification analysis using PET data. We could improve quantitative tumor evaluation by considering organ region and tumor intensity.

Translation of Preclinical PET Imaging Findings: Challenges and Motion Correction to Overcome the Confounding Effect of Anesthetics

Preclinical brain positron emission tomography (PET) in animals is performed using anesthesia to avoid movement during the PET scan. In contrast, brain PET scans in humans are typically performed in the awake subject. Anesthesia is therefore one of the principal limitations in the translation of preclinical brain PET to the clinic. This review summarizes the available literature supporting the confounding effect of anesthesia on several PET tracers for neuroscience in preclinical small animal scans. In a second part, we present the state-of-the-art methodologies to circumvent this limitation to increase the translational significance of preclinical research, with an emphasis on motion correction methods. Several motion tracking systems compatible with preclinical scanners have been developed, each one with its advantages and limitations. These systems and the novel experimental setups they can bring to preclinical brain PET research are reviewed here. While technical advances have been made in this field, and practical implementations have been demonstrated, the technique should become more readily available to research centers to allow for a wider adoption of the motion correction technique for brain research.

Rigid motion tracking using moments of inertia in TOF-PET brain studies

A data-driven method is proposed for rigid motion estimation directly from time-of-flight (TOF)-positron emission tomography (PET) emission data. Rigid motion parameters (translations and rotations) are estimated from the first and second moments of the emission data masked in a spherical volume. The accuracy of the method is analyzed on 3D analytical simulations of the PET-SORTEO brain phantom, and subsequently tested on¹⁸F-FDG as well as¹¹C-PIB brain datasets acquired on a TOF-PET/CT scanner. The estimated inertia-based motion is later compared to rigid motion parameters obtained by directly registering the short frame backprojections. We find that the method provides sub mm/degree accuracies for the estimated rigid motion parameters for counts corresponding to typical 0.5 s, 1 s, and 2 s¹⁸F-FDG brain scans, with the current TOF resolutions clinically available. The method provides robust motion estimation for different types of patient motion, most notably for a continuous patient motion case where conventional frame-based approaches which rely on little to no intra-frame motion of short time intervals could fail. The method relies on the detection of stable eigenvectors for accurate motion estimation, and a monitoring of this condition can reveal time-frames where the motion estimation is less accurate, such as in dynamic PET studies.