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Post-dispersal astrobiological events: modelling macroevolutionary dynamics for lithopanspermia. Extremophiles 2023; 27:3. [PMID: 36640217 DOI: 10.1007/s00792-023-01288-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2022] [Accepted: 12/24/2022] [Indexed: 01/15/2023]
Abstract
Lithopanspermia is defined as dispersal of living extremophiles from one planetary body to another, through life-bearing rocks ejected by meteor impacts. If lithopanspermia proves concrete, it should be viewed as an eco-evolutionary phenomenon. Biogeographic/microevolutionary models have been proposed as analogues for lithopanspermia dynamics; however, extremophile arrival on a planetary body is not the end of story. Here, we suggest that eco-evolutionary (environment + organismal microevolution) dynamics can lead to distinct macroevolutionary scenarios after extremophile arrival on a planetary body. Speciation would be the most important factor in interplanetary dynamics due to the possibly long time and distance between dispersive events, similar to long-distance dispersal dynamics on Earth. In previously uninhabited planets, persistence of extremophiles and descendants depends almost only on evolvability of extremophiles against abiotic filters. Considering a previously inhabited planet, ecological interactions at local or global scales could drive persistence (speciation/extinction) of extremophiles in the new habitat. Thus, we might expect high extinction rates if negative interactions are dominant, or, high speciation, if positive interactions occur, with extremophile lineages overpower (or not) the native biota. If interplanetary dispersal is possible, theories about the evolution of life may be universal, leading to a general eco-evolutionary model for life in the Universe.
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2
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Adams FC, Napier KJ. Transfer of Rocks Between Planetary Systems: Panspermia Revisited. ASTROBIOLOGY 2022; 22:1429-1442. [PMID: 36475961 DOI: 10.1089/ast.2021.0187] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Motivated by the recent discovery of interstellar objects passing through the solar system, and by recent developments in dynamical simulations, this article reconsiders the likelihood for life-bearing rocks to be transferred from one planetary system to another. The astronomical aspects of this lithopanspermia process can now be estimated, including the cross sections for rock capture, the velocity distributions of rocky ejecta, the survival times for captured objects, and the dynamics of the solar system in both its birth cluster and in the field. The remaining uncertainties are primarily biological, that is, the probability of life developing on a planet, the time required for such an event, and the efficiency with which life becomes seeded in a new environment. Using current estimates for the input quantities, we find that the transfer rates are enhanced in the birth cluster, but the resulting odds for success are too low for panspermia to be a likely occurrence. In contrast, the expected inventory of alien rocks in the solar system is predicted to be substantial (where the vast majority of such bodies are not biologically active and do not interact with the Earth).
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Affiliation(s)
- Fred C Adams
- Department of Physics and University of Michigan, Ann Arbor, Michigan, USA
- Department of Astronomy, University of Michigan, Ann Arbor, Michigan, USA
| | - Kevin J Napier
- Department of Physics and University of Michigan, Ann Arbor, Michigan, USA
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3
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Coleine C, Delgado-Baquerizo M. Unearthing terrestrial extreme microbiomes for searching terrestrial-like life in the Solar System. Trends Microbiol 2022; 30:1101-1115. [PMID: 35568658 DOI: 10.1016/j.tim.2022.04.002] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2022] [Revised: 04/03/2022] [Accepted: 04/11/2022] [Indexed: 01/13/2023]
Abstract
The possibility of life elsewhere in the universe has fascinated humankind for ages. To the best of our knowledge, life, as we know it, is limited to planet Earth; yet current investigation suggests that life might be more common than previously thought. In this review, we explore extreme terrestrial analogue environments in the search for some notable examples of extreme organisms, including overlooked microbial groups such as viruses, fungi, and protists, associated with limits of life on Earth. This knowledge is integral to provide the foundational principles needed to predict what sort of Earth-like organisms we might find in the Solar System and beyond, and to understand the future and origins of life on Earth.
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Affiliation(s)
- Claudia Coleine
- Department of Ecological and Biological Sciences, University of Tuscia, 01100 Viterbo, Italy.
| | - Manuel Delgado-Baquerizo
- Laboratorio de Biodiversidad y Funcionamiento Ecosistémico. Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Av. Reina Mercedes 10, E-41012, Sevilla, Spain; Unidad Asociada CSIC-UPO (BioFun). Universidad Pablo de Olavide, 41013 Sevilla, Spain.
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4
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Naz N, Liu D, Harandi BF, Kounaves SP. Microbial Growth in Martian Soil Simulants Under Terrestrial Conditions: Guiding the Search for Life on Mars. ASTROBIOLOGY 2022; 22:1210-1221. [PMID: 36000998 DOI: 10.1089/ast.2022.0022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
The search for life elsewhere in the Universe goes together with the search for liquid water. Life as we know it requires water; however, it is possible for microbial life to exist under hyperarid conditions with a minimal amount of water. We report on the ability of two typical terrestrial bacteria (Escherichia coli B and Eucapsis sp) and two extremophiles (Gloeocapsa-20201027-1 sp and Planococcus halocryophilus) to grow and survive in three martian soil (regolith) simulants (Mohave Mars Simulant-1 [MMS-1] F, Mars Global Simulant-1 [MGS-1], and JSC Mars-1A [JSC]). Survival and growth were assessed over a 21-day period under terrestrial conditions and with water:soil (vol:wt) ratios that varied from 0.25:1 to 5:1. We found that Eucapsis and Gloeocapsa sp grew best in the simulants MMS and JSC, respectively, while P. halocryophilus growth rates were better in the JSC simulant. As expected, E. coli did not show significant growth. Our results indicate that these martian simulants and thus martian regolith, with minimal or no added nutrients or water, can support the growth of extremophiles such as P. halocryphilus and Gloeocapsa. Similar extremophiles on early Mars may have survived to the present in near-surface ecological niches analogous to those where these organisms exist on Earth.
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Affiliation(s)
- Neveda Naz
- Department of Chemistry, Tufts University, Medford, Massachusetts, USA
| | - Dongyu Liu
- Department of Chemistry, Tufts University, Medford, Massachusetts, USA
| | - Bijan F Harandi
- Department of Chemistry, Tufts University, Medford, Massachusetts, USA
| | - Samuel P Kounaves
- Department of Chemistry, Tufts University, Medford, Massachusetts, USA
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5
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Carr CE. Resolving the History of Life on Earth by Seeking Life As We Know It on Mars. ASTROBIOLOGY 2022; 22:880-888. [PMID: 35467949 PMCID: PMC9298492 DOI: 10.1089/ast.2021.0043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
An origin of Earth life on Mars would resolve significant inconsistencies between the inferred history of life and Earth's geologic history. Life as we know it utilizes amino acids, nucleic acids, and lipids for the metabolic, informational, and compartment-forming subsystems of a cell. Such building blocks may have formed simultaneously from cyanosulfidic chemical precursors in a planetary surface scenario involving ultraviolet light, wet-dry cycling, and volcanism. On the inferred water world of early Earth, such an origin would have been limited to volcanic island hotspots. A cyanosulfidic origin of life could have taken place on Mars via photoredox chemistry, facilitated by orders-of-magnitude more sub-aerial crust than early Earth, and an earlier transition to oxidative conditions that could have been involved in final fixation of the genetic code. Meteoritic bombardment may have generated transient habitable environments and ejected and transferred life to Earth. Ongoing and future missions to Mars offer an unprecedented opportunity to confirm or refute evidence consistent with a cyanosulfidic origin of life on Mars, search for evidence of ancient life, and constrain the evolution of Mars' oxidation state over time. We should seek to prove or refute a martian origin for life on Earth alongside other possibilities.
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Affiliation(s)
- Christopher E. Carr
- Daniel Guggenheim School of Aerospace Engineering, Georgia Institute of Technology, Atlanta, Georgia, USA
- School of Earth and Atmospheric Sciences, Georgia Institute of Technology, Atlanta, Georgia, USA
- Address correspondence to: Christopher E. Carr, ESM Building, Room G10, 620 Cherry St NW, Atlanta, GA 30332, USA
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6
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Sithamparam M, Satthiyasilan N, Chen C, Jia TZ, Chandru K. A material-based panspermia hypothesis: The potential of polymer gels and membraneless droplets. Biopolymers 2022; 113:e23486. [PMID: 35148427 DOI: 10.1002/bip.23486] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2021] [Revised: 01/27/2022] [Accepted: 01/28/2022] [Indexed: 01/08/2023]
Abstract
The Panspermia hypothesis posits that either life's building blocks (molecular Panspermia) or life itself (organism-based Panspermia) may have been interplanetarily transferred to facilitate the origins of life (OoL) on a given planet, complementing several current OoL frameworks. Although many spaceflight experiments were performed in the past to test for potential terrestrial organisms as Panspermia seeds, it is uncertain whether such organisms will likely "seed" a new planet even if they are able to survive spaceflight. Therefore, rather than using organisms, using abiotic chemicals as seeds has been proposed as part of the molecular Panspermia hypothesis. Here, as an extension of this hypothesis, we introduce and review the plausibility of a polymeric material-based Panspermia seed (M-BPS) as a theoretical concept, where the type of polymeric material that can function as a M-BPS must be able to: (1) survive spaceflight and (2) "function", i.e., contingently drive chemical evolution toward some form of abiogenesis once arriving on a foreign planet. We use polymeric gels as a model example of a potential M-BPS. Polymeric gels that can be prebiotically synthesized on one planet (such as polyester gels) could be transferred to another planet via meteoritic transfer, where upon landing on a liquid bearing planet, can assemble into structures containing cellular-like characteristics and functionalities. Such features presupposed that these gels can assemble into compartments through phase separation to accomplish relevant functions such as encapsulation of primitive metabolic, genetic and catalytic materials, exchange of these materials, motion, coalescence, and evolution. All of these functions can result in the gels' capability to alter local geochemical niches on other planets, thereby allowing chemical evolution to lead to OoL events.
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Affiliation(s)
- Mahendran Sithamparam
- Space Science Center (ANGKASA), Institute of Climate Change, National University of Malaysia (UKM), Bangi, Selangor, Malaysia
| | - Nirmell Satthiyasilan
- Space Science Center (ANGKASA), Institute of Climate Change, National University of Malaysia (UKM), Bangi, Selangor, Malaysia
| | - Chen Chen
- Earth-Life Science Institute, Tokyo Institute of Technology, Tokyo, Japan
| | - Tony Z Jia
- Earth-Life Science Institute, Tokyo Institute of Technology, Tokyo, Japan.,Blue Marble Space Institute of Science, Seattle, Washington, USA
| | - Kuhan Chandru
- Space Science Center (ANGKASA), Institute of Climate Change, National University of Malaysia (UKM), Bangi, Selangor, Malaysia
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von Hegner I. Evolutionary Processes Transpiring in the Stages of Lithopanspermia. Acta Biotheor 2021; 69:783-798. [PMID: 33839964 DOI: 10.1007/s10441-021-09411-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2020] [Accepted: 03/30/2021] [Indexed: 11/28/2022]
Abstract
Lithopanspermia is a theory proposing a natural exchange of organisms between solar system bodies as a result of asteroidal or cometary impactors. Research has examined not only the physics of the stages themselves but also the survival probabilities for life in each stage. However, although life is the primary factor of interest in lithopanspermia, this life is mainly treated as a passive cargo. Life, however, does not merely passively receive an onslaught of stress from surroundings; instead, it reacts. Thus, planetary ejection, interplanetary transport, and planetary entry are only the first three factors in the equation. The other factors are the quality, quantity, and evolutionary strategy of the transported organisms. Thus, a reduction in organism quantity in stage 1 might increase organism quality towards a second stress challenge in stage 3. Thus, robustness towards a stressor might in fact be higher in the bacterial population surviving after transport in stage 3 than at the beginning in stage 1. Therefore, the stages of lithopanspermia can themselves facilitate evolutionary processes that enhance the ability of the collected organisms to survive stresses such as pressure and heat shock. Thus, the multiple abiotic pressures that the population encounters through the three stages can potentially lead to very robust bacteria with survival capacities considerably higher than might otherwise be expected. This analysis details an outcome that is possible but probably rare. However, in addition to lithopanspermia, spacecraft mediated panspermia may also exist. The analogous stages in a spacecraft would result in a greater likelihood of increasing the stress tolerance of hitchhiking organisms. Furthermore, missions seeking life elsewhere will frequently be sent to places where the possibility of life as we know it is assumed to exist. Thus, we not only can transport terrestrial organisms to places where they are potentially more likely to survive but also may increase their invasive potential along the way. This analysis highlights further requirements that planetary protection protocols must implement and also provides a framework for analyses of ecological scenarios regarding the transmission of life, natural or artificial, between worlds in a solar system.
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Affiliation(s)
- Ian von Hegner
- Aarhus University, Ny Munkegade 116, DK-8000, Aarhus, Denmark.
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8
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Traspas A, Burchell MJ. Tardigrade Survival Limits in High-Speed Impacts-Implications for Panspermia and Collection of Samples from Plumes Emitted by Ice Worlds. ASTROBIOLOGY 2021; 21:845-852. [PMID: 33978458 PMCID: PMC8262385 DOI: 10.1089/ast.2020.2405] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/12/2020] [Accepted: 03/24/2021] [Indexed: 06/12/2023]
Abstract
The ability of tardigrades to survive impact shocks in the kilometer per second and gigapascal range was investigated. When rocks impact planetary surfaces, the impact speeds and shock pressures are in the kilometer per second and gigapascal range. This investigation tested whether tardigrades can survive in impacts typical of those that occur naturally in the Solar System. We found that they can survive impacts up to 0.9 km s-1, which is equivalent to 1.14 GPa shock pressure, but cannot survive impacts above this. This is significantly less than the static pressure limit and has implications for tardigrade survival in panspermia models. The potential survival of tardigrades in impacts of terrestrial impact ejecta on the Moon is shown to be impossible for the average lunar impact speed of such ejecta. However, a notable fraction (around 40%) of such ejecta impact at vertical speeds low enough to permit survival. Similarly, martian impact ejecta striking Phobos, for example, at a typical impact speed will not permit viable transfer of tardigrade-like organisms, but if a fraction of such material had a lower impact speed, survival may be possible. We also consider the implications of this for the collection of viable samples by spacecraft transiting the plumes of icy water worlds such as Europa and Enceladus. We have found the limit on survival of shocks to be around 1 GPa, which is instrumental in determining appropriate mission scenarios and collection methods for the acquisition of viable materials.
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Affiliation(s)
- Alejandra Traspas
- Centre for Astrophysics and Planetary Science, School of Physical Sciences, University of Kent, Canterbury, UK
| | - Mark J. Burchell
- Centre for Astrophysics and Planetary Science, School of Physical Sciences, University of Kent, Canterbury, UK
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9
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Cockell CS, McMahon S, Biddle JF. When is Life a Viable Hypothesis? The Case of Venusian Phosphine. ASTROBIOLOGY 2021; 21:261-264. [PMID: 33337946 DOI: 10.1089/ast.2020.2390] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Affiliation(s)
- Charles S Cockell
- School of Physics and Astronomy, University of Edinburgh, Edinburgh, UK
| | - Sean McMahon
- School of Physics and Astronomy, University of Edinburgh, Edinburgh, UK
- School of Geosciences, University of Edinburgh, Edinburgh, UK
| | - Jennifer F Biddle
- School of Marine Science and Policy, University of Delaware, Newark, Delaware, USA
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10
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Coleine C, Stajich JE, de Los Ríos A, Selbmann L. Beyond the extremes: Rocks as ultimate refuge for fungi in drylands. Mycologia 2020; 113:108-133. [PMID: 33232202 DOI: 10.1080/00275514.2020.1816761] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
In an era of rapid climate change and expansion of desertification, the extremely harsh conditions of drylands are a true challenge for microbial life. Under drought conditions, where most life forms cannot survive, rocks represent the main refuge for life. Indeed, the endolithic habitat provides thermal buffering, physical stability, and protection against incident ultraviolet (UV) radiation and solar radiation and, to some extent, ensures water retention to microorganisms. The study of these highly specialized extreme-tolerant and extremophiles may provide tools for understanding microbial interactions and processes that allow them to keep their metabolic machinery active under conditions of dryness and oligotrophy that are typically incompatible with active life, up to the dry limits for life. Despite lithobiontic communities being studied all over the world, a comprehensive understanding of their ecology, evolution, and adaptation is still nascent. Herein, we survey the fungal component of these microbial ecosystems. We first provide an overview of the main defined groups (i.e., lichen-forming fungi, black fungi, and yeasts) of the most known and studied Antarctic endolithic communities that are almost the only life forms ensuring ecosystem functionality in the ice-free areas of the continent. For each group, we discuss their main traits and their diversity. Then, we focus on the fungal taxonomy and ecology of other worldwide endolithic communities. Finally, we highlight the utmost importance of a global rock survey in order to have a comprehensive view of the diversity, distribution, and functionality of these fungi in drylands, to obtain tools in desert area management, and as early alarm systems to climate change.
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Affiliation(s)
- Claudia Coleine
- Department of Ecological and Biological Sciences, University of Tuscia , Largo dell'Università snc, 01100, Viterbo, Italy
| | - Jason E Stajich
- Department of Microbiology and Plant Pathology, University of California, 900 University Ave , Riverside, California 92521
| | - Asunción de Los Ríos
- Department of Biogeochemistry and Microbial Ecology, Museo Nacional de Ciencias Naturales, Spanish National Resource Council, Madrid, Spain
| | - Laura Selbmann
- Department of Ecological and Biological Sciences, University of Tuscia , Largo dell'Università snc, 01100, Viterbo, Italy.,Italian National Antarctic Museum, Mycological Section, Genoa, Italy
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11
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Milojevic T, Weckwerth W. Molecular Mechanisms of Microbial Survivability in Outer Space: A Systems Biology Approach. Front Microbiol 2020; 11:923. [PMID: 32499769 PMCID: PMC7242639 DOI: 10.3389/fmicb.2020.00923] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2019] [Accepted: 04/20/2020] [Indexed: 01/08/2023] Open
Abstract
Since the dawn of space exploration, the survivability of terrestrial life in outer space conditions has attracted enormous attention. Space technology has enabled the development of advanced space exposure facilities to investigate in situ responses of microbial life to the stress conditions of space during interplanetary transfer. Significant progress has been made toward the understanding of the effects of space environmental factors, e.g., microgravity, vacuum and radiation, on microorganisms exposed to real and simulated space conditions. Of extreme importance is not only knowledge of survival potential of space-exposed microorganisms, but also the determination of mechanisms of survival and adaptation of predominant species to the extreme space environment, i.e., revealing the molecular machinery, which elicit microbial survivability and adaptation. Advanced technologies in -omics research have permitted genome-scale studies of molecular alterations of space-exposed microorganisms. A variety of reports show that microorganisms grown in the space environment exhibited global alterations in metabolic functions and gene expression at the transcriptional and translational levels. Proteomic, metabolomic and especially metabolic modeling approaches as essential instruments of space microbiology, synthetic biology and metabolic engineering are rather underrepresented. Here we summarized the molecular space-induced alterations of exposed microorganisms in terms of understanding the molecular mechanisms of microbial survival and adaptation to drastic outer space environment.
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Affiliation(s)
- Tetyana Milojevic
- Extremophiles/Space Biochemistry Group, Department of Biophysical Chemistry, University of Vienna, Vienna, Austria
| | - Wolfram Weckwerth
- Department of Ecogenomics and Systems Biology, University of Vienna, Vienna, Austria
- Vienna Metabolomics Center, University of Vienna, Vienna, Austria
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12
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Kurosawa K, Genda H, Hyodo R, Yamagishi A, Mikouchi T, Niihara T, Matsuyama S, Fujita K. Assessment of the probability of microbial contamination for sample return from Martian moons II: The fate of microbes on Martian moons. LIFE SCIENCES IN SPACE RESEARCH 2019; 23:85-100. [PMID: 31791609 DOI: 10.1016/j.lssr.2019.07.006] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2019] [Revised: 06/27/2019] [Accepted: 07/10/2019] [Indexed: 05/26/2023]
Abstract
This paper presents a case study of microbe transportation in the Mars-satellites system. We examined the spatial distribution of potential impact-transported microbes on the Martian moons using impact physics by following a companion study (Fujita et al., in this issue). We used sterilization data from the precede studies (Patel et al., 2018; Summers, 2017). We considered that the microbes came mainly from the Zunil crater on Mars, which was formed during 1.0-0.1 Ma. We found that 70-80% of the microbes are likely to be dispersed all over the moon surface and are rapidly sterilized due to solar and galactic cosmic radiation except for those microbes within a thick ejecta deposit produced by natural meteoroids. The other 20-30% might be shielded from radiation by thick regolith layers that formed at collapsed layers in craters produced by Mars rock impacts. The total number of potentially surviving microbes at the thick ejecta deposits is estimated to be 3-4 orders of magnitude lower than at the Mars rock craters. The microbe concentration is irregular in the horizontal direction due to Mars rock bombardment and is largely depth-dependent due to the radiation sterilization. The surviving fraction of transported microbes would be only ∼1 ppm on Phobos and ∼100 ppm on Deimos, suggesting that the transport processes and radiation severely affect microbe survival. The microbe sampling probability from the Martian moons was also investigatesd. We suggest that sample return missions from the Martian moons are classified into Unrestricted Earth-Return missions for 30 g samples and 10 cm depth sampling, even in our conservative scenario. We also conducted a full statistical analysis pertaining to sampling the regolith of Phobos to include the effects of uncertainties in input parameters on the sampling probability. The most likely probability of microbial contamination for return samples is estimated to be two orders of magnitude lower than the 10-6 criterion defined by the planetary protection policy of the Committee on Space Research (COSPAR).
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Affiliation(s)
- Kosuke Kurosawa
- Planetary Exploration Research Center, Chiba Institute of Technology, 2-17-1, Narashino, Tsudanuma, Chiba 275-0016, Japan.
| | - Hidenori Genda
- Earth-Life Science Institute, Tokyo Institute of Technology, 2-12-1 Ookayama, Meguro-ku, Tokyo 152-8550, Japan
| | - Ryuki Hyodo
- Earth-Life Science Institute, Tokyo Institute of Technology, 2-12-1 Ookayama, Meguro-ku, Tokyo 152-8550, Japan
| | - Akihiko Yamagishi
- Department of Applied Life Sciences, School of Life Sciences, Tokyo University of Pharmacy and Life Sciences, 1432-1, Horinouchi, Hachioji, Tokyo 192-0392, Japan
| | - Takashi Mikouchi
- The University Museum, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
| | - Takafumi Niihara
- Department of Systems Innovation, School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
| | - Shingo Matsuyama
- Aeronautical Technology Directorate, Japan Aerospace Exploration Agency, 7-44-1, Jindaijihigasi-machi, Chofu, Tokyo 182-8522, Japan
| | - Kazuhisa Fujita
- Institute of Space and Astronomical Science, Japan Aerospace Exploration Agency, 3-1-1, Yoshinodai, Chuo-ku, Sagamihara, Kanagawa 252-5210, Japan
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13
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Mojarro A, Hachey J, Bailey R, Brown M, Doebler R, Ruvkun G, Zuber MT, Carr CE. Nucleic Acid Extraction and Sequencing from Low-Biomass Synthetic Mars Analog Soils for In Situ Life Detection. ASTROBIOLOGY 2019; 19:1139-1152. [PMID: 31204862 PMCID: PMC6708270 DOI: 10.1089/ast.2018.1929] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Recent studies regarding the origins of life and Mars-Earth meteorite transfer simulations suggest that biological informational polymers, such as nucleic acids (DNA and RNA), have the potential to provide unambiguous evidence of life on Mars. To this end, we are developing a metagenomics-based life-detection instrument which integrates nucleic acid extraction and nanopore sequencing: the Search for Extra-Terrestrial Genomes (SETG). Our goal is to isolate and sequence nucleic acids from extant or preserved life on Mars in order to determine if a particular genetic sequence (1) is distantly related to life on Earth, indicating a shared ancestry due to lithological exchange, or (2) is unrelated to life on Earth, suggesting convergent origins of life on Mars. In this study, we validate prior work on nucleic acid extraction from cells deposited in Mars analog soils down to microbial concentrations (i.e., 104 cells in 50 mg of soil) observed in the driest and coldest regions on Earth. In addition, we report low-input nanopore sequencing results from 2 pg of purified Bacillus subtilis spore DNA simulating ideal extraction yields equivalent to 1 ppb life-detection sensitivity. We achieve this by employing carrier sequencing, a method of sequencing sub-nanogram DNA in the background of a genomic carrier. After filtering of carrier, low-quality, and low-complexity reads we detected 5 B. subtilis reads, 18 contamination reads (including Homo sapiens), and 6 high-quality noise reads believed to be sequencing artifacts.
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Affiliation(s)
- Angel Mojarro
- Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts
- Address correspondence to: Angel Mojarro, Massachusetts Institute of Technology, 77 Massachusetts Ave, Room E25-647, Cambridge, MA 02139
| | | | - Ryan Bailey
- Claremont Biosolutions, LLC, Upland, California
| | - Mark Brown
- Claremont Biosolutions, LLC, Upland, California
| | | | - Gary Ruvkun
- Department of Molecular Biology, Massachusetts General Hospital, Boston, Massachusetts
| | - Maria T. Zuber
- Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts
| | - Christopher E. Carr
- Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts
- Department of Molecular Biology, Massachusetts General Hospital, Boston, Massachusetts
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14
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Thombre RS, Shivakarthik E, Sivaraman B, Vaishampayan PA, Seuylemezian A, Meka JK, Vijayan S, Kulkarni PP, Pataskar T, Patil BS. Survival of Extremotolerant Bacteria from the Mukundpura Meteorite Impact Crater. ASTROBIOLOGY 2019; 19:785-796. [PMID: 31081685 DOI: 10.1089/ast.2018.1928] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Carbonaceous meteorites provide clues with regard to prebiotic chemistry and the origin of life. Geological Survey of India recorded a carbonaceous chondrite meteorite fall in Mukundpura, India, on June 6, 2017. We conducted a study to investigate the microbial community that survived the meteorite impact. 16S rRNA metagenomic sequencing indicates the presence of Actinobacteria, Proteobacteria, and Acidobacteria in meteorite impact soil. Comparative phylogenetic analysis revealed an intriguing abundance of class Bacilli in the impact soil. Bacillus thermocopriae IR-1, a moderately thermotolerant organism, was isolated from a rock, impacted by the Mukundpura meteorite. We investigated the resilience of B. thermocopriae IR-1 to environmental stresses and impact shock in a Reddy shock tube. Bacillus thermocopriae IR-1 survived (28.82% survival) the effect of shock waves at a peak shock pressure of 300 kPa, temperature 400 K, and Mach number of 1.47. This investigation presents the first report on the effect of impact shock on B. thermocopriae IR-1. The study is also the first report on studying the microbial diversity and isolation of bacteria from impact crater soil immediately after meteorite impact event.
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Affiliation(s)
- Rebecca S Thombre
- 1 Department of Biotechnology, Modern College of Arts, Science and Commerce, Pune, India
| | - E Shivakarthik
- 2 Atomic, Molecular and Optical Physics Division, Physical Research Laboratory, Ahmedabad, India
| | - Bhalamurugan Sivaraman
- 2 Atomic, Molecular and Optical Physics Division, Physical Research Laboratory, Ahmedabad, India
| | - Parag A Vaishampayan
- 3 Biotechnology and Planetary Protection Group, Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | - Arman Seuylemezian
- 3 Biotechnology and Planetary Protection Group, Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | - J K Meka
- 2 Atomic, Molecular and Optical Physics Division, Physical Research Laboratory, Ahmedabad, India
| | - S Vijayan
- 2 Atomic, Molecular and Optical Physics Division, Physical Research Laboratory, Ahmedabad, India
| | - P P Kulkarni
- 1 Department of Biotechnology, Modern College of Arts, Science and Commerce, Pune, India
| | - T Pataskar
- 1 Department of Biotechnology, Modern College of Arts, Science and Commerce, Pune, India
| | - B S Patil
- 1 Department of Biotechnology, Modern College of Arts, Science and Commerce, Pune, India
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Cramm MA, Chakraborty A, Li C, Ruff SE, Jørgensen BB, Hubert CRJ. Freezing Tolerance of Thermophilic Bacterial Endospores in Marine Sediments. Front Microbiol 2019; 10:945. [PMID: 31130935 PMCID: PMC6509201 DOI: 10.3389/fmicb.2019.00945] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2019] [Accepted: 04/15/2019] [Indexed: 01/18/2023] Open
Abstract
Dormant endospores of anaerobic, thermophilic bacteria found in cold marine sediments offer a useful model for studying microbial biogeography, dispersal, and survival. The dormant endospore phenotype confers resistance to unfavorable environmental conditions, allowing dispersal to be isolated and studied independently of other factors such as environmental selection. To study the resilience of thermospores to conditions relevant for survival in extreme cold conditions, their viability following different freezing treatments was tested. Marine sediment was frozen at either −80°C or −20°C for 10 days prior to pasteurization and incubation at +50°C for 21 days to assess thermospore viability. Sulfate reduction commenced at +50°C following both freezing pretreatments indicating persistence of thermophilic endospores of sulfate-reducing bacteria. The onset of sulfate reduction at +50°C was delayed in −80°C pretreated microcosms, which exhibited more variability between triplicates, compared to −20°C pretreated microcosms and parallel controls that were not frozen in advance. Microbial communities were evaluated by 16S rRNA gene amplicon sequencing, revealing an increase in the relative sequence abundance of thermophilic endospore-forming Firmicutes in all microcosms. Different freezing pretreatments (−80°C and −20°C) did not appreciably influence the shift in overall bacterial community composition that occurred during the +50°C incubations. Communities that had been frozen prior to +50°C incubation showed an increase in the relative sequence abundance of operational taxonomic units (OTUs) affiliated with the class Bacilli, relative to unfrozen controls. These results show that freezing impacts but does not obliterate thermospore populations and their ability to germinate and grow under appropriate conditions. Indeed the majority of the thermospore OTUs detected in this study (21 of 22) could be observed following one or both freezing treatments. These results are important for assessing thermospore viability in frozen samples and following cold exposure such as the very low temperatures that would be encountered during panspermia.
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Affiliation(s)
- Margaret A Cramm
- Geomicrobiology Group, Department of Biological Sciences, University of Calgary, Calgary, AB, Canada
| | - Anirban Chakraborty
- Geomicrobiology Group, Department of Biological Sciences, University of Calgary, Calgary, AB, Canada
| | - Carmen Li
- Geomicrobiology Group, Department of Biological Sciences, University of Calgary, Calgary, AB, Canada
| | - S Emil Ruff
- Energy Bioengineering Group, Department of Geoscience, University of Calgary, Calgary, AB, Canada
| | - Bo Barker Jørgensen
- Center for Geomicrobiology, Department of Bioscience, Aarhus University, Aarhus, Denmark
| | - Casey R J Hubert
- Geomicrobiology Group, Department of Biological Sciences, University of Calgary, Calgary, AB, Canada
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Cortesão M, Fuchs FM, Commichau FM, Eichenberger P, Schuerger AC, Nicholson WL, Setlow P, Moeller R. Bacillus subtilis Spore Resistance to Simulated Mars Surface Conditions. Front Microbiol 2019; 10:333. [PMID: 30863384 PMCID: PMC6399134 DOI: 10.3389/fmicb.2019.00333] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2018] [Accepted: 02/08/2019] [Indexed: 11/13/2022] Open
Abstract
In a Mars exploration scenario, knowing if and how highly resistant Bacillus subtilis spores would survive on the Martian surface is crucial to design planetary protection measures and avoid false positives in life-detection experiments. Therefore, in this study a systematic screening was performed to determine whether B. subtilis spores could survive an average day on Mars. For that, spores from two comprehensive sets of isogenic B. subtilis mutant strains, defective in DNA protection or repair genes, were exposed to 24 h of simulated Martian atmospheric environment with or without 8 h of Martian UV radiation [M(+)UV and M(-)UV, respectively]. When exposed to M(+)UV, spore survival was dependent on: (1) core dehydration maintenance, (2) protection of DNA by α/β-type small acid soluble proteins (SASP), and (3) removal and repair of the major UV photoproduct (SP) in spore DNA. In turn, when exposed to M(-)UV, spore survival was mainly dependent on protection by the multilayered spore coat, and DNA double-strand breaks represent the main lesion accumulated. Bacillus subtilis spores were able to survive for at least a limited time in a simulated Martian environment, both with or without solar UV radiation. Moreover, M(-)UV-treated spores exhibited survival rates significantly higher than the M(+)UV-treated spores. This suggests that on a real Martian surface, radiation shielding of spores (e.g., by dust, rocks, or spacecraft surface irregularities) might significantly extend survival rates. Mutagenesis were strongly dependent on the functionality of all structural components with small acid-soluble spore proteins, coat layers and dipicolinic acid as key protectants and efficiency DNA damage removal by AP endonucleases (ExoA and Nfo), non-homologous end joining (NHEJ), mismatch repair (MMR) and error-prone translesion synthesis (TLS). Thus, future efforts should focus on: (1) determining the DNA damage in wild-type spores exposed to M(+/-)UV and (2) assessing spore survival and viability with shielding of spores via Mars regolith and other relevant materials.
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Affiliation(s)
- Marta Cortesão
- Space Microbiology Research Group, Radiation Biology Department, Institute of Aerospace Medicine, German Aerospace Center, Cologne, Germany
| | - Felix M Fuchs
- Space Microbiology Research Group, Radiation Biology Department, Institute of Aerospace Medicine, German Aerospace Center, Cologne, Germany
| | - Fabian M Commichau
- Department of General Microbiology, Institute for Microbiology and Genetics, University of Göttingen, Göttingen, Germany
| | - Patrick Eichenberger
- Department of Biology, Center for Genomics and Systems Biology, New York University, New York, NY, United States
| | - Andrew C Schuerger
- Department of Plant Pathology, Space Life Sciences Laboratory, University of Florida, Merritt Island, FL, United States
| | - Wayne L Nicholson
- Department of Microbiology and Cell Science, Space Life Sciences Laboratory, University of Florida, Merritt Island, FL, United States
| | - Peter Setlow
- Department of Molecular Biology and Biophysics, University of Connecticut Health Center, Farmington, CT, United States
| | - Ralf Moeller
- Space Microbiology Research Group, Radiation Biology Department, Institute of Aerospace Medicine, German Aerospace Center, Cologne, Germany
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Backhaus T, Meeßen J, Demets R, de Vera JP, Ott S. Characterization of Viability of the Lichen Buellia frigida After 1.5 Years in Space on the International Space Station. ASTROBIOLOGY 2019; 19:233-241. [PMID: 30742495 DOI: 10.1089/ast.2018.1894] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
The lichen Buellia frigida was exposed to space and simulated Mars analog conditions in the Biology and Mars Experiment (BIOMEX) project operated outside the International Space Station (ISS) for 1.5 years. To determine the effects of the Low Earth Orbit (LEO) conditions on the lichen symbionts, a LIVE/DEAD staining analysis test was performed. After return from the ISS, the lichen symbionts demonstrated mortality rates of up to 100% for the algal symbiont and up to 97.8% for the fungal symbiont. In contrast, the lichen symbiont controls exhibited mortality rates of 10.3% up to 31.9% for the algal symbiont and 14.5% for the fungal symbiont. The results performed in the BIOMEX Mars simulation experiment on the ISS indicate that the potential for survival and the resistance of the lichen B. frigida to LEO conditions are very low. It is unlikely that Mars could be inhabited by this lichen, even for a limited amount of time, or even not habitable planet for the tested lichen symbionts.
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Affiliation(s)
- Theresa Backhaus
- 1 Institute of Botany, Heinrich Heine University, Duesseldorf, Germany
| | - Joachim Meeßen
- 1 Institute of Botany, Heinrich Heine University, Duesseldorf, Germany
| | - René Demets
- 2 European Space Research and Technology Centre (ESTEC), European Space Agency (ESA), Noordwijk, Netherlands
| | - Jean-Pierre de Vera
- 3 Research Group, Astrobiological Laboratories, Institute of Planetary Research, Management and Infrastructure, German Aerospace Center (DLR), Berlin, Germany
| | - Sieglinde Ott
- 1 Institute of Botany, Heinrich Heine University, Duesseldorf, Germany
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de Vera JP, Alawi M, Backhaus T, Baqué M, Billi D, Böttger U, Berger T, Bohmeier M, Cockell C, Demets R, de la Torre Noetzel R, Edwards H, Elsaesser A, Fagliarone C, Fiedler A, Foing B, Foucher F, Fritz J, Hanke F, Herzog T, Horneck G, Hübers HW, Huwe B, Joshi J, Kozyrovska N, Kruchten M, Lasch P, Lee N, Leuko S, Leya T, Lorek A, Martínez-Frías J, Meessen J, Moritz S, Moeller R, Olsson-Francis K, Onofri S, Ott S, Pacelli C, Podolich O, Rabbow E, Reitz G, Rettberg P, Reva O, Rothschild L, Sancho LG, Schulze-Makuch D, Selbmann L, Serrano P, Szewzyk U, Verseux C, Wadsworth J, Wagner D, Westall F, Wolter D, Zucconi L. Limits of Life and the Habitability of Mars: The ESA Space Experiment BIOMEX on the ISS. ASTROBIOLOGY 2019; 19:145-157. [PMID: 30742496 PMCID: PMC6383581 DOI: 10.1089/ast.2018.1897] [Citation(s) in RCA: 55] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2018] [Accepted: 01/07/2019] [Indexed: 06/01/2023]
Abstract
BIOMEX (BIOlogy and Mars EXperiment) is an ESA/Roscosmos space exposure experiment housed within the exposure facility EXPOSE-R2 outside the Zvezda module on the International Space Station (ISS). The design of the multiuser facility supports-among others-the BIOMEX investigations into the stability and level of degradation of space-exposed biosignatures such as pigments, secondary metabolites, and cell surfaces in contact with a terrestrial and Mars analog mineral environment. In parallel, analysis on the viability of the investigated organisms has provided relevant data for evaluation of the habitability of Mars, for the limits of life, and for the likelihood of an interplanetary transfer of life (theory of lithopanspermia). In this project, lichens, archaea, bacteria, cyanobacteria, snow/permafrost algae, meristematic black fungi, and bryophytes from alpine and polar habitats were embedded, grown, and cultured on a mixture of martian and lunar regolith analogs or other terrestrial minerals. The organisms and regolith analogs and terrestrial mineral mixtures were then exposed to space and to simulated Mars-like conditions by way of the EXPOSE-R2 facility. In this special issue, we present the first set of data obtained in reference to our investigation into the habitability of Mars and limits of life. This project was initiated and implemented by the BIOMEX group, an international and interdisciplinary consortium of 30 institutes in 12 countries on 3 continents. Preflight tests for sample selection, results from ground-based simulation experiments, and the space experiments themselves are presented and include a complete overview of the scientific processes required for this space experiment and postflight analysis. The presented BIOMEX concept could be scaled up to future exposure experiments on the Moon and will serve as a pretest in low Earth orbit.
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Affiliation(s)
- Jean-Pierre de Vera
- German Aerospace Center (DLR), Institute of Planetary Research, Management and Infrastructure, Research Group Astrobiological Laboratories, Berlin, Germany
| | - Mashal Alawi
- GFZ, German Research Centre for Geosciences, Helmholtz Centre Potsdam, Section 5.3 Geomicrobiology, Telegrafenberg, Potsdam, Germany
| | - Theresa Backhaus
- Institut für Botanik, Heinrich-Heine-Universität (HHU), Düsseldorf, Germany
| | - Mickael Baqué
- German Aerospace Center (DLR), Institute of Planetary Research, Management and Infrastructure, Research Group Astrobiological Laboratories, Berlin, Germany
| | - Daniela Billi
- University of Rome Tor Vergata, Department of Biology, Rome, Italy
| | - Ute Böttger
- German Aerospace Center (DLR), Institute for Optical Sensor Systems, Berlin, Germany
| | - Thomas Berger
- German Aerospace Center (DLR), Institute of Aerospace Medicine, Radiation Biology Department, Köln, Germany
| | - Maria Bohmeier
- German Aerospace Center (DLR), Institute of Aerospace Medicine, Radiation Biology Department, Köln, Germany
| | - Charles Cockell
- School of Physics and Astronomy, University of Edinburgh, Edinburgh, UK
| | - René Demets
- European Space Research and Technology Centre (ESTEC), European Space Agency (ESA), Noordwijk, the Netherlands
| | - Rosa de la Torre Noetzel
- Departamento de Observación de la Tierra, Instituto Nacional de Técnica Aeroespacial (INTA), Madrid, Spain
| | - Howell Edwards
- Raman Spectroscopy Group, University Analytical Centre, Division of Chemical and Forensic Sciences, University of Bradford, West Yorkshire, UK
| | - Andreas Elsaesser
- Institut für experimentelle Physik, Experimentelle Molekulare Biophysik, Frei Universität Berlin, Berlin, Germany
| | | | - Annelie Fiedler
- University of Potsdam, Biodiversity Research/Systematic Botany, Potsdam, Germany
| | - Bernard Foing
- European Space Research and Technology Centre (ESTEC), European Space Agency (ESA), Noordwijk, the Netherlands
| | - Frédéric Foucher
- CNRS, Centre de Biophysique Moléculaire, UPR 4301, Orléans, France
| | - Jörg Fritz
- Museum für Naturkunde - Leibniz Institute for Evolution and Biodiversity Science, Berlin, Germany
| | - Franziska Hanke
- German Aerospace Center (DLR), Institute for Optical Sensor Systems, Berlin, Germany
| | - Thomas Herzog
- TH Wildau (Technical University of Applied Sciences), Wildau, Germany
| | - Gerda Horneck
- German Aerospace Center (DLR), Institute of Aerospace Medicine, Radiation Biology Department, Köln, Germany
| | - Heinz-Wilhelm Hübers
- German Aerospace Center (DLR), Institute for Optical Sensor Systems, Berlin, Germany
| | - Björn Huwe
- University of Potsdam, Biodiversity Research/Systematic Botany, Potsdam, Germany
| | - Jasmin Joshi
- University of Potsdam, Biodiversity Research/Systematic Botany, Potsdam, Germany
- Hochschule für Technik HSR Rapperswil, Institute for Landscape and Open Space, Rapperswil, Switzerland
| | | | - Martha Kruchten
- Institut für Botanik, Heinrich-Heine-Universität (HHU), Düsseldorf, Germany
| | - Peter Lasch
- Robert Koch Institute, Centre for Biological Threats and Special Pathogens, Berlin, Germany
| | - Natuschka Lee
- Department of Ecology and Environmental Sciences, Umeå University, Umeå, Sweden
| | - Stefan Leuko
- German Aerospace Center (DLR), Institute of Aerospace Medicine, Radiation Biology Department, Köln, Germany
| | - Thomas Leya
- Extremophile Research & Biobank CCCryo, Fraunhofer Institute for Cell Therapy and Immunology, Branch Bioanalytics and Bioprocesses (IZI-BB), Potsdam, Germany
| | - Andreas Lorek
- German Aerospace Center (DLR), Institute of Planetary Research, Management and Infrastructure, Research Group Astrobiological Laboratories, Berlin, Germany
| | | | - Joachim Meessen
- Institut für Botanik, Heinrich-Heine-Universität (HHU), Düsseldorf, Germany
| | - Sophie Moritz
- University of Potsdam, Biodiversity Research/Systematic Botany, Potsdam, Germany
| | - Ralf Moeller
- German Aerospace Center (DLR), Institute of Aerospace Medicine, Radiation Biology Department, Köln, Germany
| | - Karen Olsson-Francis
- School of Environment, Earth and Ecosystem Sciences, The Open University, Milton Keynes, UK
| | - Silvano Onofri
- Department of Ecological and Biological Sciences, University of Tuscia, Viterbo, Italy
| | - Sieglinde Ott
- Institut für Botanik, Heinrich-Heine-Universität (HHU), Düsseldorf, Germany
| | - Claudia Pacelli
- Department of Ecological and Biological Sciences, University of Tuscia, Viterbo, Italy
| | - Olga Podolich
- Institute of Molecular Biology & Genetics of NASU, Kyiv, Ukraine
| | - Elke Rabbow
- German Aerospace Center (DLR), Institute of Aerospace Medicine, Radiation Biology Department, Köln, Germany
| | - Günther Reitz
- German Aerospace Center (DLR), Institute of Aerospace Medicine, Radiation Biology Department, Köln, Germany
| | - Petra Rettberg
- German Aerospace Center (DLR), Institute of Aerospace Medicine, Radiation Biology Department, Köln, Germany
| | - Oleg Reva
- Centre for Bioinformatics and Computational Biology, Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Pretoria, South Africa
| | | | | | | | - Laura Selbmann
- Department of Ecological and Biological Sciences, University of Tuscia, Viterbo, Italy
- Italian National Antarctic Museum (MNA), Mycological Section, Genoa, Italy
| | - Paloma Serrano
- GFZ, German Research Centre for Geosciences, Helmholtz Centre Potsdam, Section 5.3 Geomicrobiology, Telegrafenberg, Potsdam, Germany
- AWI, Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Potsdam, Germany
| | - Ulrich Szewzyk
- TU Berlin, Institute of Environmental Technology, Environmental Microbiology, Berlin, Germany
| | - Cyprien Verseux
- University of Rome Tor Vergata, Department of Biology, Rome, Italy
| | | | - Dirk Wagner
- GFZ, German Research Centre for Geosciences, Helmholtz Centre Potsdam, Section 5.3 Geomicrobiology, Telegrafenberg, Potsdam, Germany
- University of Potsdam, Institute of Earth and Environmental Sciences, Potsdam, Germany
| | - Frances Westall
- CNRS, Centre de Biophysique Moléculaire, UPR 4301, Orléans, France
| | - David Wolter
- German Aerospace Center (DLR), Institute of Planetary Research, Management and Infrastructure, Research Group Astrobiological Laboratories, Berlin, Germany
| | - Laura Zucconi
- Department of Ecological and Biological Sciences, University of Tuscia, Viterbo, Italy
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Veras D, Armstrong DJ, Blake JA, Gutiérrez-Marcos JF, Jackson AP, Schäefer H. Dynamical and Biological Panspermia Constraints Within Multi-planet Exosystems. ASTROBIOLOGY 2018; 18:1106-1122. [PMID: 30095987 DOI: 10.1089/ast.2017.1786] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
As discoveries of multiple planets in the habitable zone of their parent star mount, developing analytical techniques to quantify extrasolar intra-system panspermia will become increasingly important. Here, we provide user-friendly prescriptions that describe the asteroid impact characteristics which would be necessary to transport life both inwards and outwards within these systems within a single framework. Our focus is on projectile generation and delivery and our expressions are algebraic, eliminating the need for the solution of differential equations. We derive a probability distribution function for life-bearing debris to reach a planetary orbit, and describe the survival of micro-organisms during planetary ejection, their journey through interplanetary space, and atmospheric entry.
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Affiliation(s)
- Dimitri Veras
- 1 Centre for Exoplanets and Habitability, University of Warwick , Coventry, United Kingdom
- 2 Department of Physics, University of Warwick , Coventry, United Kingdom
| | - David J Armstrong
- 1 Centre for Exoplanets and Habitability, University of Warwick , Coventry, United Kingdom
- 2 Department of Physics, University of Warwick , Coventry, United Kingdom
| | - James A Blake
- 1 Centre for Exoplanets and Habitability, University of Warwick , Coventry, United Kingdom
- 2 Department of Physics, University of Warwick , Coventry, United Kingdom
| | - Jose F Gutiérrez-Marcos
- 1 Centre for Exoplanets and Habitability, University of Warwick , Coventry, United Kingdom
- 3 School of Life Sciences, University of Warwick , Coventry, United Kingdom
| | - Alan P Jackson
- 4 Centre for Planetary Sciences, University of Toronto at Scarborough , Toronto, Canada
- 5 School of Earth and Space Exploration, Arizona State University , Tempe, Arizona
| | - Hendrik Schäefer
- 1 Centre for Exoplanets and Habitability, University of Warwick , Coventry, United Kingdom
- 3 School of Life Sciences, University of Warwick , Coventry, United Kingdom
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de Souza TAJ, Pereira TC. Caenorhabditis elegans Tolerates Hyperaccelerations up to 400,000 x g. ASTROBIOLOGY 2018; 18:825-833. [PMID: 29746159 DOI: 10.1089/ast.2017.1802] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
One of the most important laboratory animal species is the nematode Caenorhabditis elegans, which has been used in a range of research fields such as neurobiology, body development, and molecular biology. The scientific progress obtained by employing C. elegans as a model in these areas has encouraged its use in new fields. One of the new potential applications concerns the biological responses to hyperacceleration stress (g-force), but only a few studies have evaluated the response of multicellular organisms to extreme hypergravity conditions at the order of magnitude 105 x g, which is the theorized force experienced by rocks ejected from Mars (or similar planets). Therefore, we subjected the nematode C. elegans to 400,000 x g (equivalent to that force) and evaluated viability, general morphology, and behavior of C. elegans after exposure to this stress. The metabolic activity of this nematode in response to the gravitational spectrum of 50-400,000 x g was also evaluated by means of the MTT assay. Surprisingly, we found that this organism showed no decrease in viability, no changes in behavior and development, and no drastic metabolic depression after hyperacceleration. Thus, we demonstrated for the first time that this multicellular research model can withstand extremely high g-forces, which prompts the use of C. elegans as a new model for extreme hypergravity. Key Words: Caenorhabditis elegans-Hypergravity-Ultracentrifugation-Acceleration-Panspermia-Astrobiology. Astrobiology 18, 825-833.
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Affiliation(s)
- Tiago Alves Jorge de Souza
- 1 Department of Genetics, Graduate Program in Genetics, FMRP, University of São Paulo , Ribeirao Preto, Brazil
- 2 Department of Biology, FFCLRP, University of São Paulo , Ribeirao Preto, Brazil
| | - Tiago Campos Pereira
- 1 Department of Genetics, Graduate Program in Genetics, FMRP, University of São Paulo , Ribeirao Preto, Brazil
- 2 Department of Biology, FFCLRP, University of São Paulo , Ribeirao Preto, Brazil
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21
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Onofri S, Selbmann L, Pacelli C, de Vera JP, Horneck G, Hallsworth JE, Zucconi L. Integrity of the DNA and Cellular Ultrastructure of Cryptoendolithic Fungi in Space or Mars Conditions: A 1.5-Year Study at the International Space Station. Life (Basel) 2018; 8:E23. [PMID: 29921763 PMCID: PMC6027225 DOI: 10.3390/life8020023] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2018] [Revised: 06/10/2018] [Accepted: 06/12/2018] [Indexed: 11/17/2022] Open
Abstract
The black fungi Cryomyces antarcticus and Cryomyces minteri are highly melanized and are resilient to cold, ultra-violet, ionizing radiation and other extreme conditions. These microorganisms were isolated from cryptoendolithic microbial communities in the McMurdo Dry Valleys (Antarctica) and studied in Low Earth Orbit (LEO), using the EXPOSE-E facility on the International Space Station (ISS). Previously, it was demonstrated that C. antarcticus and C. minteri survive the hostile conditions of space (vacuum, temperature fluctuations, and the full spectrum of extraterrestrial solar electromagnetic radiation), as well as Mars conditions that were simulated in space for a 1.5-year period. Here, we qualitatively and quantitatively characterize damage to DNA and cellular ultrastructure in desiccated cells of these two species, within the frame of the same experiment. The DNA and cells of C. antarcticus exhibited a higher resistance than those of C. minteri. This is presumably attributable to the thicker (melanized) cell wall of the former. Generally, DNA was readily detected (by PCR) regardless of exposure conditions or fungal species, but the C. minteri DNA had been more-extensively mutated. We discuss the implications for using DNA, when properly shielded, as a biosignature of recently extinct or extant life.
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Affiliation(s)
- Silvano Onofri
- Department of Ecological and Biological Sciences, University of Tuscia, 01100 Viterbo, Italy.
| | - Laura Selbmann
- Department of Ecological and Biological Sciences, University of Tuscia, 01100 Viterbo, Italy.
- Italian National Antarctic Museum (MNA), Mycological Section, 16166 Genoa, Italy.
| | - Claudia Pacelli
- Department of Ecological and Biological Sciences, University of Tuscia, 01100 Viterbo, Italy.
| | - Jean Pierre de Vera
- German Aerospace Center (DLR) Berlin, Institute of Planetary Research, Rutherfordstreet 2, 12489 Berlin, Germany.
| | - Gerda Horneck
- German Aerospace Centre, Institute of Aerospace Medicine, Linder Hoehe, D 51170 Köln, Germany.
| | - John E Hallsworth
- Institute for Global Food Security, School of Biological Sciences, MBC, Queen's University Belfast, Belfast BT9 7BL, UK.
| | - Laura Zucconi
- Department of Ecological and Biological Sciences, University of Tuscia, 01100 Viterbo, Italy.
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23
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Olsson-Francis K, Ramkissoon NK, Price AB, Slade DJ, Macey MC, Pearson VK. The Study of Microbial Survival in Extraterrestrial Environments Using Low Earth Orbit and Ground-Based Experiments. J Microbiol Methods 2018. [DOI: 10.1016/bs.mim.2018.07.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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Selbmann L, Pacelli C, Zucconi L, Dadachova E, Moeller R, de Vera JP, Onofri S. Resistance of an Antarctic cryptoendolithic black fungus to radiation gives new insights of astrobiological relevance. Fungal Biol 2017; 122:546-554. [PMID: 29801799 DOI: 10.1016/j.funbio.2017.10.012] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2017] [Revised: 10/25/2017] [Accepted: 10/26/2017] [Indexed: 11/18/2022]
Abstract
The Antarctic black meristematic fungus Cryomyces antarcticus CCFEE 515 occurs endolithically in the McMurdo Dry Valleys of Antarctica, one of the best analogue for Mars environment on Earth. To date, this fungus is considered one of the best eukaryotic models for astrobiological studies and has been repeatedly selected for space experiments in the last decade. The obtained results are reviewed here, with special focus on responses to space relevant irradiation, UV radiation, and both sparsely and densely ionizing radiation, which represent the major injuries for a putative space-traveller. The remarkable resistance of this model organism to space stress, its radioresistance in particular, and mechanisms involved, significantly contributed to expanding our concept of limits for life and provided new insights on the origin and evolution of life in planetary systems, habitability, and biosignatures for life detection as well as on human protection during space missions.
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Affiliation(s)
- Laura Selbmann
- Department of Ecological and Biological Sciences (DEB), University of Tuscia, Largo dell'Università snc, 01100 Viterbo, Italy.
| | - Claudia Pacelli
- Department of Ecological and Biological Sciences (DEB), University of Tuscia, Largo dell'Università snc, 01100 Viterbo, Italy.
| | - Laura Zucconi
- Department of Ecological and Biological Sciences (DEB), University of Tuscia, Largo dell'Università snc, 01100 Viterbo, Italy.
| | - Ekaterina Dadachova
- College of Pharmacy and Nutrition, University of Saskatchewan, Saskatoon, Canada.
| | - Ralf Moeller
- German Aerospace Center (DLR), Institute of Aerospace Medicine, Radiation Biology Department, Space Microbiology Research Group, Cologne (Köln), Germany.
| | - Jean-Pierre de Vera
- German Aerospace Center (DLR), Institute of Planetary Research, Management and Infrastructure, Astrobiological Laboratories, Rutherfordstr. 2, 12489 Berlin, Germany.
| | - Silvano Onofri
- Department of Ecological and Biological Sciences (DEB), University of Tuscia, Largo dell'Università snc, 01100 Viterbo, Italy.
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Mojarro A, Ruvkun G, Zuber MT, Carr CE. Nucleic Acid Extraction from Synthetic Mars Analog Soils for in situ Life Detection. ASTROBIOLOGY 2017; 17:747-760. [PMID: 28704064 PMCID: PMC5567878 DOI: 10.1089/ast.2016.1535] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Biological informational polymers such as nucleic acids have the potential to provide unambiguous evidence of life beyond Earth. To this end, we are developing an automated in situ life-detection instrument that integrates nucleic acid extraction and nanopore sequencing: the Search for Extra-Terrestrial Genomes (SETG) instrument. Our goal is to isolate and determine the sequence of nucleic acids from extant or preserved life on Mars, if, for example, there is common ancestry to life on Mars and Earth. As is true of metagenomic analysis of terrestrial environmental samples, the SETG instrument must isolate nucleic acids from crude samples and then determine the DNA sequence of the unknown nucleic acids. Our initial DNA extraction experiments resulted in low to undetectable amounts of DNA due to soil chemistry-dependent soil-DNA interactions, namely adsorption to mineral surfaces, binding to divalent/trivalent cations, destruction by iron redox cycling, and acidic conditions. Subsequently, we developed soil-specific extraction protocols that increase DNA yields through a combination of desalting, utilization of competitive binders, and promotion of anaerobic conditions. Our results suggest that a combination of desalting and utilizing competitive binders may establish a "universal" nucleic acid extraction protocol suitable for analyzing samples from diverse soils on Mars. Key Words: Life-detection instruments-Nucleic acids-Mars-Panspermia. Astrobiology 17, 747-760.
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Affiliation(s)
- Angel Mojarro
- Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts
| | - Gary Ruvkun
- Department of Molecular Biology, Massachusetts General Hospital, Boston, Massachusetts
- Department of Genetics, Harvard Medical School, Boston, Massachusetts
| | - Maria T. Zuber
- Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts
| | - Christopher E. Carr
- Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts
- Department of Molecular Biology, Massachusetts General Hospital, Boston, Massachusetts
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26
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Verseux C, Baqué M, Cifariello R, Fagliarone C, Raguse M, Moeller R, Billi D. Evaluation of the Resistance of Chroococcidiopsis spp. to Sparsely and Densely Ionizing Irradiation. ASTROBIOLOGY 2017; 17:118-125. [PMID: 28151689 DOI: 10.1089/ast.2015.1450] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
Studying the resistance of cyanobacteria to ionizing radiation provides relevant information regarding astrobiology-related topics including the search for life on Mars, lithopanspermia, and biological life-support systems. Here, we report on the resistance of desert cyanobacteria of the genus Chroococcidiopsis, which were exposed (as part of the STARLIFE series of experiments) in both hydrated and dried states to ionizing radiation with different linear energy transfer values (0.2 to 200 keV/μm). Irradiation with up to 1 kGy of He or Si ions, 2 kGy of Fe ions, 5 kGy of X-rays, or 11.59 kGy of γ rays (60Co) did not eradicate Chroococcidiopsis populations, nor did it induce detectable damage to DNA or plasma membranes. The relevance of these results for astrobiology is briefly discussed. Key Words: Ionizing radiation-Linear energy transfer-Lithopanspermia-Cyanobacterial radioresistance-Chroococcidiopsis-Mars. Astrobiology 17, 118-125.
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Affiliation(s)
- Cyprien Verseux
- 1 Department of Biology, Laboratory of Astrobiology and Molecular Biology of Cyanobacteria from Extreme Environments, University of Rome Tor Vergata , Rome, Italy
| | - Mickael Baqué
- 1 Department of Biology, Laboratory of Astrobiology and Molecular Biology of Cyanobacteria from Extreme Environments, University of Rome Tor Vergata , Rome, Italy
- 2 Astrobiological Laboratories Research Group, Institute of Planetary Research , Management and Infrastructure, German Aerospace Center (DLR), Berlin, Germany
| | - Riccardo Cifariello
- 1 Department of Biology, Laboratory of Astrobiology and Molecular Biology of Cyanobacteria from Extreme Environments, University of Rome Tor Vergata , Rome, Italy
| | - Claudia Fagliarone
- 1 Department of Biology, Laboratory of Astrobiology and Molecular Biology of Cyanobacteria from Extreme Environments, University of Rome Tor Vergata , Rome, Italy
| | - Marina Raguse
- 3 Space Microbiology Research Group, Radiation Biology Department, Institute of Aerospace Medicine , German Aerospace Center (DLR), Cologne, Germany
| | - Ralf Moeller
- 3 Space Microbiology Research Group, Radiation Biology Department, Institute of Aerospace Medicine , German Aerospace Center (DLR), Cologne, Germany
| | - Daniela Billi
- 1 Department of Biology, Laboratory of Astrobiology and Molecular Biology of Cyanobacteria from Extreme Environments, University of Rome Tor Vergata , Rome, Italy
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Vasanthan T, Alejaldre L, Hider J, Patel S, Husain N, Umapathisivam B, Stone J. G-Equivalent Acceleration Tolerance in the Eutardigrade Species Hypsibius dujardini. ASTROBIOLOGY 2017; 17:55-60. [PMID: 28051326 DOI: 10.1089/ast.2015.1439] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Tardigrades are microscopic organisms renowned for their ability to survive extreme environmental conditions. Tardigrade extreme-tolerance research has centered on the ability to withstand desiccation, low and high temperatures, and high hydrostatic pressure and radiation levels. Tardigrade tolerance to hypergravity, however, has yet to be described. We used the eutardigrade species Hypsibius dujardini to investigate short-term tolerance to g-equivalent accelerations (i.e., mimicking g-forces). Data obtained from specimens centrifuged between 3421g and 16,060g for 1 min inclusively reveal tolerance in an acceleration-dependent relation, with lower survivorship and egg production at higher accelerations. This is the first study to demonstrate tardigrade potential for tolerance to hypergravity and describe expected effects on tardigrade survival and reproduction. These findings will prove to be useful in lithopanspermia research (i.e., viable spread in meteoritic rocks). Key Words: Astrobiology-Extreme tolerance-Hypergravity-Tardigrade. Astrobiology 17, 55-60.
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Affiliation(s)
- Tarushika Vasanthan
- 1 Department of Biology, McMaster University , Hamilton, Canada
- 2 Origins Institute, McMaster University , Hamilton, Canada
| | - Lorea Alejaldre
- 1 Department of Biology, McMaster University , Hamilton, Canada
| | - Jessica Hider
- 1 Department of Biology, McMaster University , Hamilton, Canada
| | - Shreya Patel
- 1 Department of Biology, McMaster University , Hamilton, Canada
| | - Nabiha Husain
- 1 Department of Biology, McMaster University , Hamilton, Canada
| | | | - Jonathon Stone
- 1 Department of Biology, McMaster University , Hamilton, Canada
- 2 Origins Institute, McMaster University , Hamilton, Canada
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Gomoiu I, Chatzitheodoridis E, Vadrucci S, Walther I, Cojoc R. Fungal Spores Viability on the International Space Station. ORIGINS LIFE EVOL B 2016; 46:403-418. [PMID: 27106019 DOI: 10.1007/s11084-016-9502-5] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2015] [Accepted: 02/08/2016] [Indexed: 11/28/2022]
Abstract
In this study we investigated the security of a spaceflight experiment from two points of view: spreading of dried fungal spores placed on the different wafers and their viability during short and long term missions on the International Space Station (ISS). Microscopic characteristics of spores from dried spores samples were investigated, as well as the morphology of the colonies obtained from spores that survived during mission. The selected fungal species were: Aspergillus niger, Cladosporium herbarum, Ulocladium chartarum, and Basipetospora halophila. They have been chosen mainly based on their involvement in the biodeterioration of different substrate in the ISS as well as their presence as possible contaminants of the ISS. From biological point of view, three of the selected species are black fungi, with high melanin content and therefore highly resistant to space radiation. The visual inspection and analysis of the images taken before and after the short and the long term experiments have shown that all biocontainers were returned to Earth without damages. Microscope images of the lids of the culture plates revealed that the spores of all species were actually not detached from the surface of the wafers and did not contaminate the lids. From the adhesion point of view all types of wafers can be used in space experiments, with a special comment on the viability in the particular case of iron wafers when used for spores that belong to B. halophila (halophilic strain). This is encouraging in performing experiments with fungi without risking contamination. The spore viability was lower in the experiment for long time to ISS conditions than that of the short experiment. From the observations, it is suggested that the environment of the enclosed biocontainer, as well as the species'specific behaviour have an important effect, reducing the viability in time. Even the spores were not detached from the surface of the wafers, it was observed that spores used in the long term experiment lost the outer layer of their coat without affecting the viability since they were still protected by the middle and the inner layer of the coating. This research highlights a new protocol to perform spaceflight experiments inside the ISS with fungal spores in microgravity conditions, under the additional effect of possible cosmic radiation. According to this protocol the results are expressed in terms of viability, microscopic and morphological changes.
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Affiliation(s)
- I Gomoiu
- Institute of Biology, 296 Splaiul Independentei, 060031, Bucharest, Romania.
| | - E Chatzitheodoridis
- School of Mining and Metallurgical Engineering, National Technical University of Athens, 9 Heroon Polytechneiou str., Gr-15780 Zografou, Athens, Greece
| | - S Vadrucci
- Space Biology Group, ETH Zurich, Technoparkstrasse 1, 8005, Zurich, Switzerland
| | - I Walther
- Space Biology Group, ETH Zurich, Technoparkstrasse 1, 8005, Zurich, Switzerland
| | - R Cojoc
- Institute of Biology, 296 Splaiul Independentei, 060031, Bucharest, Romania
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29
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Pressure as a Limiting Factor for Life. Life (Basel) 2016; 6:life6030034. [PMID: 27548228 PMCID: PMC5041010 DOI: 10.3390/life6030034] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2016] [Revised: 07/12/2016] [Accepted: 08/09/2016] [Indexed: 11/17/2022] Open
Abstract
Facts concerning the stability and functioning of key biomolecular components suggest that cellular life should no longer be viable above a few thousand atmospheres (200-300 MPa). However, organisms are seen to survive in the laboratory to much higher pressures, extending into the GPa or even tens of GPa ranges. This is causing main questions to be posed concerning the survival mechanisms of simple to complex organisms. Understanding the ultimate pressure survival of organisms is critical for food sterilization and agricultural products conservation technologies. On Earth the deep biosphere is limited in its extent by geothermal gradients but if life forms exist in cooler habitats elsewhere then survival to greater depths must be considered. The extent of pressure resistance and survival appears to vary greatly with the timescale of the exposure. For example, shock experiments on nanosecond timescales reveal greatly enhanced survival rates extending to higher pressure. Some organisms could survive bolide impacts thus allowing successful transport between planetary bodies. We summarize some of the main questions raised by recent results and their implications for the survival of life under extreme compression conditions and its possible extent in the laboratory and throughout the universe.
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30
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Montgomery W, Bromiley GD, Sephton MA. The nature of organic records in impact excavated rocks on Mars. Sci Rep 2016; 6:30947. [PMID: 27492071 PMCID: PMC4974657 DOI: 10.1038/srep30947] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2016] [Accepted: 07/11/2016] [Indexed: 11/09/2022] Open
Abstract
Impact ejected rocks are targets for life detection missions to Mars. The Martian subsurface is more favourable to organic preservation than the surface owing to an attenuation of radiation and physical separation from oxidising materials with increasing depth. Impact events bring materials to the surface where they may be accessed without complicated drilling procedures. On Earth, different assemblages of organic matter types are derived from varying depositional environments. Here we assess whether these different types of organic materials can survive impact events without corruption. We subjected four terrestrial organic matter types to elevated pressures and temperatures in piston-cylinder experiments followed by chemical characterisation using whole-rock pyrolysis-gas chromatography-mass spectrometry. Our data reveal that long chain hydrocarbon-dominated organic matter (types I and II; mainly microbial or algal) are unresistant to pressure whereas aromatic hydrocarbon-dominated organic matter types (types III and IV; mainly land plant, metamorphosed or degraded, displaying some superficial chemical similarities to abiotic meteoritic organic matter) are relatively resistant. This suggests that the impact excavated record of potential biology on Mars will be unavoidably biased, with microbial organic matter underrepresented while metamorphosed, degraded or abiotic meteoritic organic matter types will be selectively preserved.
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Affiliation(s)
- W Montgomery
- Impacts and Astromaterials Research Centre, Department of Earth Science and Engineering, Imperial College London, SW7 2AZ, UK
| | - G D Bromiley
- School of GeoSciences, University of Edinburgh, Grant Institute, West Main Road, Edinburgh EH9 3JW, UK
| | - M A Sephton
- Impacts and Astromaterials Research Centre, Department of Earth Science and Engineering, Imperial College London, SW7 2AZ, UK
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31
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Moissl-Eichinger C, Cockell C, Rettberg P. Venturing into new realms? Microorganisms in space. FEMS Microbiol Rev 2016; 40:722-37. [PMID: 27354346 DOI: 10.1093/femsre/fuw015] [Citation(s) in RCA: 59] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/23/2016] [Indexed: 12/15/2022] Open
Abstract
One of the biggest challenges of science is the determination of whether extraterrestrial life exists. Although potential habitable areas might be available for complex life, it is more likely that microbial life could exist in space. Many extremotolerant and extremophilic microbes have been found to be able to withstand numerous, combined environmental factors, such as high or low temperatures and pressures, high-salt conditions, high doses of radiation, desiccation or nutrient limitations. They may even survive the transit from one planet to another. Terrestrial Mars-analogue sites are one focus of researchers, in order to understand the microbial diversity in preparation for upcoming space missions aimed at the detection of life. However, such missions could also pose a risk with respect to contamination of the extraterrestrial environment by accidentally transferred terrestrial microorganisms. Closer to the Earth, the International Space Station is the most enclosed habitat, where humans work and live-and with them numerous microorganisms. It is still unknown how microbes adapt to this environment, possibly even creating a risk for the crew. Information on the microbiology of the ISS will have an impact on the planning and implementation of long-term human spaceflights in order to ensure a safe, stable and balanced microbiome on board.
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Affiliation(s)
- Christine Moissl-Eichinger
- Department for Internal Medicine, Medical University of Graz, 8036 Graz, Austria BioTechMed Graz, 8010 Graz, Austria
| | - Charles Cockell
- UK Centre for Astrobiology, School of Physics and Astronomy, University of Edinburgh, Edinburgh EH10 4EP, UK
| | - Petra Rettberg
- Radiation Biology Department, Institute of Aerospace Medicine, German Aerospace Center (DLR), 51147 Cologne, Germany
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Brandt A, Posthoff E, de Vera JP, Onofri S, Ott S. Characterisation of Growth and Ultrastructural Effects of the Xanthoria elegans Photobiont After 1.5 Years of Space Exposure on the International Space Station. ORIGINS LIFE EVOL B 2016; 46:311-21. [PMID: 26526425 DOI: 10.1007/s11084-015-9470-1] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2015] [Accepted: 10/05/2015] [Indexed: 10/22/2022]
Abstract
The lichen Xanthoria elegans has been exposed to space and simulated Mars-analogue environment in the Lichen and Fungi Experiment (LIFE) on the EXPOSE-E facility at the International Space Station (ISS). This long-term exposure of 559 days tested the ability of various organisms to cope with either low earth orbit (LEO) or Mars-analogue conditions, such as vacuum, Mars-analogue atmosphere, rapid temperature cycling, cosmic radiation of up to 215 ± 16 mGy, and insolation of accumulated doses up to 4.87 GJm(-2), including up to 0.314 GJm(-2) of UV irradiation. In a previous study, X. elegans demonstrated considerable resistance towards these conditions by means of photosynthetic activity as well as by post-exposure metabolic activity of 50-80% in the algal and 60-90% in the fungal symbiont (Brandt et al. Int J Astrobiol 14(3):411-425, 2015). The two objectives of the present study were complementary: First, to verify the high post-exposure viability by using a qualitative cultivation assay. Second, to characterise the cellular damages by transmission electron microscopy (TEM) which were caused by the space and Mars-analogue exposure conditions of LIFE. Since the algal symbiont of lichens is considered as the more susceptible partner (de Vera and Ott 2010), the analyses focused on the photobiont. The study demonstrated growth and proliferation of the isolated photobiont after all exposure conditions of LIFE. The ultrastructural analysis of the algal cells provided an insight to cellular damages caused by long-term exposure and highlighted that desiccation-induced breakdown of cellular integrity is more pronounced under the more severe space vacuum than under Mars-analogue atmospheric conditions. In conclusion, desiccation-induced damages were identified as a major threat to the photobiont of X. elegans. Nonetheless, a fraction of the photobiont cells remained cultivable after all exposure conditions tested in LIFE.
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Affiliation(s)
- Annette Brandt
- Institute of Botany, Heinrich-Heine-University (HHU), Universitaetsstr. 1, 40225, Duesseldorf, Germany
| | - Eva Posthoff
- Institute of Botany, Heinrich-Heine-University (HHU), Universitaetsstr. 1, 40225, Duesseldorf, Germany
| | - Jean-Pierre de Vera
- Institute of Planetary Research, German Aerospace Center (DLR), Rutherfordstr. 2, 12489, Berlin, Germany
| | - Silvano Onofri
- Department of Ecological and Biological Sciences (DEB), Tuscia University, Largo dell'Università, 01100, Viterbo, Italy
| | - Sieglinde Ott
- Institute of Botany, Heinrich-Heine-University (HHU), Universitaetsstr. 1, 40225, Duesseldorf, Germany.
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33
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Measuring microbial metabolism in atypical environments: Bentonite in used nuclear fuel storage. J Microbiol Methods 2016; 120:79-90. [DOI: 10.1016/j.mimet.2015.11.006] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2015] [Revised: 11/09/2015] [Accepted: 11/09/2015] [Indexed: 11/19/2022]
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Meeßen J, Wuthenow P, Schille P, Rabbow E, de Vera JPP, Ott S. Resistance of the Lichen Buellia frigida to Simulated Space Conditions during the Preflight Tests for BIOMEX--Viability Assay and Morphological Stability. ASTROBIOLOGY 2015; 15:601-615. [PMID: 26218403 PMCID: PMC4554929 DOI: 10.1089/ast.2015.1281] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2015] [Accepted: 05/24/2015] [Indexed: 06/06/2023]
Abstract
Samples of the extremotolerant Antarctic endemite lichen Buellia frigida are currently exposed to low-Earth orbit-space and simulated Mars conditions at the Biology and Mars Experiment (BIOMEX), which is part of the ESA mission EXPOSE-R2 on the International Space Station and was launched on 23 July 2014. In preparation for the mission, several preflight tests (Experimental and Scientific Verification Tests, EVT and SVT) assessed the sample preparation and hardware integration procedures as well as the resistance of the candidate organism toward the abiotic stressors experienced under space and Mars conditions. Therefore, we quantified the post-exposure viability with a live/dead staining technique utilizing FUN-1 and confocal laser scanning microscopy (CLSM). In addition, we used scanning electron microscopy (SEM) to investigate putative patterns of morphological-anatomical damage that lichens may suffer under the extreme exposure conditions. The present results demonstrate that Buellia frigida is capable of surviving the conditions tested in EVT and SVT. The mycobiont showed lower average impairment of its viability than the photobiont (viability rates of >83% and >69%, respectively), and the lichen thallus suffered no significant damage in terms of thalline integrity and symbiotic contact. These results will become essential to substantiate and validate the results prospectively obtained from the returning space mission. Moreover, they will help assess the limits and limitations of terrestrial organisms under space and Mars conditions as well as characterize the adaptive traits that confer lichen extremotolerance.
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Affiliation(s)
- J Meeßen
- 1 Institut für Botanik, Heinrich-Heine Universität (HHU) , Düsseldorf, Germany
| | - P Wuthenow
- 1 Institut für Botanik, Heinrich-Heine Universität (HHU) , Düsseldorf, Germany
| | - P Schille
- 1 Institut für Botanik, Heinrich-Heine Universität (HHU) , Düsseldorf, Germany
| | - E Rabbow
- 2 Institut für Luft- und Raumfahrtmedizin, Deutsches Zentrum für Luft- und Raumfahrt (DLR) , Köln, Germany
| | - J-P P de Vera
- 3 Institut für Planetenforschung, Deutsches Zentrum für Luft- und Raumfahrt (DLR) , Berlin, Germany
| | - S Ott
- 1 Institut für Botanik, Heinrich-Heine Universität (HHU) , Düsseldorf, Germany
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35
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Slobodkin A, Gavrilov S, Ionov V, Iliyin V. Spore-Forming Thermophilic Bacterium within Artificial Meteorite Survives Entry into the Earth's Atmosphere on FOTON-M4 Satellite Landing Module. PLoS One 2015; 10:e0132611. [PMID: 26151136 PMCID: PMC4494708 DOI: 10.1371/journal.pone.0132611] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2015] [Accepted: 06/16/2015] [Indexed: 11/18/2022] Open
Abstract
One of the key conditions of the lithopanspermia hypothesis is that microorganisms situated within meteorites could survive hypervelocity entry from space through the Earth's atmosphere. So far, all experimental proof of this possibility has been based on tests with sounding rockets which do not reach the transit velocities of natural meteorites. We explored the survival of the spore-forming thermophilic anaerobic bacterium, Thermoanaerobacter siderophilus, placed within 1.4-cm thick basalt discs fixed on the exterior of a space capsule (the METEORITE experiment on the FOTON-M4 satellite). After 45 days of orbital flight, the landing module of the space vehicle returned to Earth. The temperature during the atmospheric transit was high enough to melt the surface of basalt. T. siderophilus survived the entry; viable cells were recovered from 4 of 24 wells loaded with this microorganism. The identity of the strain was confirmed by 16S rRNA gene sequence and physiological tests. This is the first report on the survival of a lifeform within an artificial meteorite after entry from space orbit through Earth's atmosphere at a velocity that closely approached the velocities of natural meteorites. The characteristics of the artificial meteorite and the living object applied in this study can serve as positive controls in further experiments on testing of different organisms and conditions of interplanetary transport.
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Affiliation(s)
- Alexander Slobodkin
- Winogradsky Institute of Microbiology, Russian Academy of Sciences, Prospect 60-letiya Oktyabrya 7/2, 117312 Moscow, Russia
| | - Sergey Gavrilov
- Winogradsky Institute of Microbiology, Russian Academy of Sciences, Prospect 60-letiya Oktyabrya 7/2, 117312 Moscow, Russia
| | - Victor Ionov
- Russian Federation State Research Center Institute of Biomedical Problems, Russian Academy of Sciences, Khoroshevskoe Shosse 76 A, 123007 Moscow, Russia
| | - Vyacheslav Iliyin
- Russian Federation State Research Center Institute of Biomedical Problems, Russian Academy of Sciences, Khoroshevskoe Shosse 76 A, 123007 Moscow, Russia
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Burchell MJ, McDermott KH, Price MC, Yolland LJ. Survival of fossils under extreme shocks induced by hypervelocity impacts. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2014; 372:20130190. [PMID: 25071234 PMCID: PMC4115461 DOI: 10.1098/rsta.2013.0190] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
Experimental data are shown for survival of fossilized diatoms undergoing shocks in the GPa range. The results were obtained from hypervelocity impact experiments which fired fossilized diatoms frozen in ice into water targets. After the shots, the material recovered from the target water was inspected for diatom fossils. Nine shots were carried out, at speeds from 0.388 to 5.34 km s(-1), corresponding to mean peak pressures of 0.2-19 GPa. In all cases, fragmented fossilized diatoms were recovered, but both the mean and the maximum fragment size decreased with increasing impact speed and hence peak pressure. Examples of intact diatoms were found after the impacts, even in some of the higher speed shots, but their frequency and size decreased significantly at the higher speeds. This is the first demonstration that fossils can survive and be transferred from projectile to target in hypervelocity impacts, implying that it is possible that, as suggested by other authors, terrestrial rocks ejected from the Earth by giant impacts from space, and which then strike the Moon, may successfully transfer terrestrial fossils to the Moon.
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Affiliation(s)
- M J Burchell
- Centre for Astrophysics and Planetary Science, School of Physical Sciences, Ingram Building, University of Kent, Canterbury, Kent CT2 7NH, UK
| | - K H McDermott
- Centre for Astrophysics and Planetary Science, School of Physical Sciences, Ingram Building, University of Kent, Canterbury, Kent CT2 7NH, UK
| | - M C Price
- Centre for Astrophysics and Planetary Science, School of Physical Sciences, Ingram Building, University of Kent, Canterbury, Kent CT2 7NH, UK
| | - L J Yolland
- Centre for Astrophysics and Planetary Science, School of Physical Sciences, Ingram Building, University of Kent, Canterbury, Kent CT2 7NH, UK
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Reimold WU, Koeberl C. Impact structures in Africa: A review. JOURNAL OF AFRICAN EARTH SCIENCES (OXFORD, ENGLAND : 1994) 2014; 93:57-175. [PMID: 27065753 PMCID: PMC4802546 DOI: 10.1016/j.jafrearsci.2014.01.008] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2013] [Revised: 01/15/2014] [Accepted: 01/17/2014] [Indexed: 05/11/2023]
Abstract
More than 50 years of space and planetary exploration and concomitant studies of terrestrial impact structures have demonstrated that impact cratering has been a fundamental process - an essential part of planetary evolution - ever since the beginning of accretion and has played a major role in planetary evolution throughout the solar system and beyond. This not only pertains to the development of the planets but to evolution of life as well. The terrestrial impact record represents only a small fraction of the bombardment history that Earth experienced throughout its evolution. While remote sensing investigations of planetary surfaces provide essential information about surface evolution and surface processes, they do not provide the information required for understanding the ultra-high strain rate, high-pressure, and high-temperature impact process. Thus, hands-on investigations of rocks from terrestrial impact craters, shock experimentation for pressure and temperature calibration of impact-related deformation of rocks and minerals, as well as parameter studies pertaining to the physics and chemistry of cratering and ejecta formation and emplacement, and laboratory studies of impact-generated lithologies are mandatory tools. These, together with numerical modeling analysis of impact physics, form the backbone of impact cratering studies. Here, we review the current status of knowledge about impact cratering - and provide a detailed account of the African impact record, which has been expanded vastly since a first overview was published in 1994. No less than 19 confirmed impact structures, and one shatter cone occurrence without related impact crater are now known from Africa. In addition, a number of impact glass, tektite and spherule layer occurrences are known. The 49 sites with proposed, but not yet confirmed, possible impact structures contain at least a considerable number of structures that, from available information, hold the promise to be able to expand the African impact record drastically - provided the political conditions for safe ground-truthing will become available. The fact that 28 structures have also been shown to date NOT to be of impact origin further underpins the strong interest in impact in Africa. We hope that this review stimulates the education of students about impact cratering and the fundamental importance of this process for Earth - both for its biological and geological evolution. This work may provide a reference volume for those workers who would like to search for impact craters and their ejecta in Africa.
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Affiliation(s)
- Wolf Uwe Reimold
- Museum für Naturkunde Berlin, Leibniz Institute for Evolution and Biodiversity Science, Invalidenstrasse 43, 10115 Berlin, Germany
- Humboldt Universität zu Berlin, Unter den Linden 6, 10099 Berlin, Germany
| | - Christian Koeberl
- Department of Lithospheric Research, University of Vienna, Althanstrasse 14, A-1090 Vienna, Austria
- Natural History Museum, Burgring 7, A-1010 Vienna, Austria
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Quantification of encapsulated bioburden in spacecraft polymer materials by cultivation-dependent and molecular methods. PLoS One 2014; 9:e94265. [PMID: 24736730 PMCID: PMC3988189 DOI: 10.1371/journal.pone.0094265] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2013] [Accepted: 03/12/2014] [Indexed: 11/19/2022] Open
Abstract
Bioburden encapsulated in spacecraft polymers (such as adhesives and coatings) poses a potential risk to jeopardize scientific exploration of other celestial bodies. This is particularly critical for spacecraft components intended for hard landing. So far, it remained unclear if polymers are indeed a source of microbial contamination. In addition, data with respect to survival of microbes during the embedding/polymerization process are sparse. In this study we developed testing strategies to quantitatively examine encapsulated bioburden in five different polymers used frequently and in large quantities on spaceflight hardware. As quantitative extraction of the bioburden from polymerized (solid) materials did not prove feasible, contaminants were extracted from uncured precursors. Cultivation-based analyses revealed <0.1–2.5 colony forming units (cfu) per cm3 polymer, whereas quantitative PCR-based detection of contaminants indicated considerably higher values, despite low DNA extraction efficiency. Results obtained from this approach reflect the most conservative proxy for encapsulated bioburden, as they give the maximum bioburden of the polymers irrespective of any additional physical and chemical stress occurring during polymerization. To address the latter issue, we deployed an embedding model to elucidate and monitor the physiological status of embedded Bacillus safensis spores in a cured polymer. Staining approaches using AlexaFluor succinimidyl ester 488 (AF488), propidium monoazide (PMA), CTC (5-cyano-2,3-diotolyl tetrazolium chloride) demonstrated that embedded spores retained integrity, germination and cultivation ability even after polymerization of the adhesive Scotch-Weld 2216 B/A. Using the methods presented here, we were able to estimate the worst case contribution of encapsulated bioburden in different polymers to the bioburden of spacecraft. We demonstrated that spores were not affected by polymerization processes. Besides Planetary Protection considerations, our results could prove useful for the manufacturing of food packaging, pharmacy industry and implant technology.
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Meessen J, Sánchez FJ, Sadowsky A, de la Torre R, Ott S, de Vera JP. Extremotolerance and resistance of lichens: comparative studies on five species used in astrobiological research II. Secondary lichen compounds. ORIGINS LIFE EVOL B 2013; 43:501-26. [PMID: 24362711 DOI: 10.1007/s11084-013-9348-z] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2013] [Accepted: 10/25/2013] [Indexed: 10/25/2022]
Abstract
Lichens, which are symbioses of a fungus and one or two photoautotrophs, frequently tolerate extreme environmental conditions. This makes them valuable model systems in astrobiological research to fathom the limits and limitations of eukaryotic symbioses. Various studies demonstrated the high resistance of selected extremotolerant lichens towards extreme, non-terrestrial abiotic factors including space exposure, hypervelocity impact simulations as well as space and Martian parameter simulations. This study focusses on the diverse set of secondary lichen compounds (SLCs) that act as photo- and UVR-protective substances. Five lichen species used in present-day astrobiological research were compared: Buellia frigida, Circinaria gyrosa, Rhizocarpon geographicum, Xanthoria elegans, and Pleopsidium chlorophanum. Detailed investigation of secondary substances including photosynthetic pigments was performed for whole lichen thalli but also for axenically cultivated mycobionts and photobionts by methods of UV/VIS-spectrophotometry and two types of high performance liquid chromatography (HPLC). Additionally, a set of chemical tests is presented to confirm the formation of melanic compounds in lichen and mycobiont samples. All investigated lichens reveal various sets of SLCs, except C. gyrosa where only melanin was putatively identified. Such studies will help to assess the contribution of SLCs on lichen extremotolerance, to understand the adaptation of lichens to prevalent abiotic stressors of the respective habitat, and to form a basis for interpreting recent and future astrobiological experiments. As most of the identified SLCs demonstrated a high capacity in absorbing UVR, they may also explain the high resistance of lichens towards non-terrestrial UVR.
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Affiliation(s)
- J Meessen
- Institut für Botanik, Heinrich-Heine-Universität (HHU), Universitätsstr.1, 40225, Düsseldorf, Germany,
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Kawaguchi Y, Yang Y, Kawashiri N, Shiraishi K, Takasu M, Narumi I, Satoh K, Hashimoto H, Nakagawa K, Tanigawa Y, Momoki YH, Tanabe M, Sugino T, Takahashi Y, Shimizu Y, Yoshida S, Kobayashi K, Yokobori SI, Yamagishi A. The possible interplanetary transfer of microbes: assessing the viability of Deinococcus spp. under the ISS Environmental conditions for performing exposure experiments of microbes in the Tanpopo mission. ORIGINS LIFE EVOL B 2013; 43:411-28. [PMID: 24132659 DOI: 10.1007/s11084-013-9346-1] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2013] [Accepted: 09/16/2013] [Indexed: 01/29/2023]
Abstract
To investigate the possible interplanetary transfer of life, numerous exposure experiments have been carried out on various microbes in space since the 1960s. In the Tanpopo mission, we have proposed to carry out experiments on capture and space exposure of microbes at the Exposure Facility of the Japanese Experimental Module of the International Space Station (ISS). Microbial candidates for the exposure experiments in space include Deinococcus spp.: Deinococcus radiodurans, D. aerius and D. aetherius. In this paper, we have examined the survivability of Deinococcus spp. under the environmental conditions in ISS in orbit (i.e., long exposure to heavy-ion beams, temperature cycles, vacuum and UV irradiation). A One-year dose of heavy-ion beam irradiation did not affect the viability of Deinococcus spp. within the detection limit. Vacuum (10(-1) Pa) also had little effect on the cell viability. Experiments to test the effects of changes in temperature from 80 °C to -80 °C in 90 min (± 80 °C/90 min cycle) or from 60 °C to -60 °C in 90 min (± 60 °C/90 min cycle) on cell viability revealed that the survival rate decreased severely by the ± 80 °C/90 min temperature cycle. Exposure of various thicknesses of deinococcal cell aggregates to UV radiation (172 nm and 254 nm, respectively) revealed that a few hundred micrometer thick aggregate of deinococcal cells would be able to withstand the solar UV radiation on ISS for 1 year. We concluded that aggregated deinococcal cells will survive the yearlong exposure experiments. We propose that microbial cells can aggregate as an ark for the interplanetary transfer of microbes, and we named it 'massapanspermia'.
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Affiliation(s)
- Yuko Kawaguchi
- Laboratory for Extremophiles, Department of Applied Molecular Biology, School of Life Sciences, Tokyo University of Pharmacy and Life Sciences, 1432-1 Horinouchi, Hachioji, Tokyo, 192-0392, Japan
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41
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Picard A, Daniel I. Pressure as an environmental parameter for microbial life--a review. Biophys Chem 2013; 183:30-41. [PMID: 23891571 DOI: 10.1016/j.bpc.2013.06.019] [Citation(s) in RCA: 62] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2013] [Revised: 06/18/2013] [Accepted: 06/22/2013] [Indexed: 01/18/2023]
Abstract
Microbial life has been prevailing in the biosphere for the last 3.8 Ga at least. Throughout most of the Earth's history it has experienced a range of pressures; both dynamic pressure when the young Earth was heavily bombarded, and static pressure in subsurface environments that could have served as a refuge and where microbial life nowadays flourishes. In this review, we discuss the extent of high-pressure habitats in early and modern times and provide a short overview of microbial survival under dynamic pressures. We summarize the current knowledge about the impact of microbial activity on biogeochemical cycles under pressures characteristic of the deep subsurface. We evaluate the possibility that pressure can be a limiting parameter for life at depth. Finally, we discuss the open questions and knowledge gaps that exist in the field of high-pressure geomicrobiology.
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Affiliation(s)
- Aude Picard
- Center for Applied Geoscience, Eberhard Karls University Tübingen, Sigwartstrasse 10, 72076 Tübingen, Germany.
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Carr CE, Rowedder H, Lui CS, Zlatkovsky I, Papalias CW, Bolander J, Myers JW, Bustillo J, Rothberg JM, Zuber MT, Ruvkun G. Radiation resistance of sequencing chips for in situ life detection. ASTROBIOLOGY 2013; 13:560-569. [PMID: 23734755 DOI: 10.1089/ast.2012.0923] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
Life beyond Earth may be based on RNA or DNA if such life is related to life on Earth through shared ancestry due to meteoritic exchange, such as may be the case for Mars, or if delivery of similar building blocks to habitable environments has biased the evolution of life toward utilizing nucleic acids. In this case, in situ sequencing is a powerful approach to identify and characterize such life without the limitations or expense of returning samples to Earth, and can monitor forward contamination. A new semiconductor sequencing technology based on sensing hydrogen ions released during nucleotide incorporation can enable massively parallel sequencing in a small, robust, optics-free CMOS chip format. We demonstrate that these sequencing chips survive several analogues of space radiation at doses consistent with a 2-year Mars mission, including protons with solar particle event-distributed energy levels and 1 GeV oxygen and iron ions. We find no measurable impact of irradiation at 1 and 5 Gy doses on sequencing quality nor on low-level hardware characteristics. Further testing is required to study the impacts of soft errors as well as to characterize performance under neutron and gamma irradiation and at higher doses, which would be expected during operation in environments with significant trapped energetic particles such as during a mission to Europa. Our results support future efforts to use in situ sequencing to test theories of panspermia and/or whether life has a common chemical basis.
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Affiliation(s)
- Christopher E Carr
- Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA
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Meeßen J, Sánchez FJ, Brandt A, Balzer EM, de la Torre R, Sancho LG, de Vera JP, Ott S. Extremotolerance and resistance of lichens: comparative studies on five species used in astrobiological research I. Morphological and anatomical characteristics. ORIGINS LIFE EVOL B 2013; 43:283-303. [PMID: 23868319 DOI: 10.1007/s11084-013-9337-2] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2013] [Accepted: 03/26/2013] [Indexed: 10/26/2022]
Abstract
Lichens are symbioses of two organisms, a fungal mycobiont and a photoautotrophic photobiont. In nature, many lichens tolerate extreme environmental conditions and thus became valuable models in astrobiological research to fathom biological resistance towards non-terrestrial conditions; including space exposure, hypervelocity impact simulations as well as space and Martian parameter simulations. All studies demonstrated the high resistance towards non-terrestrial abiotic factors of selected extremotolerant lichens. Besides other adaptations, this study focuses on the morphological and anatomical traits by comparing five lichen species-Circinaria gyrosa, Rhizocarpon geographicum, Xanthoria elegans, Buellia frigida, Pleopsidium chlorophanum-used in present-day astrobiological research. Detailed investigation of thallus organization by microscopy methods allows to study the effect of morphology on lichen resistance and forms a basis for interpreting data of recent and future experiments. All investigated lichens reveal a common heteromerous thallus structure but diverging sets of morphological-anatomical traits, as intra-/extra-thalline mucilage matrices, cortices, algal arrangements, and hyphal strands. In B. frigida, R. geographicum, and X. elegans the combination of pigmented cortex, algal arrangement, and mucilage seems to enhance resistance, while subcortex and algal clustering seem to be crucial in C. gyrosa, as well as pigmented cortices and basal thallus protrusions in P. chlorophanum. Thus, generalizations on morphologically conferred resistance have to be avoided. Such differences might reflect the diverging evolutionary histories and are advantageous by adapting lichens to prevalent abiotic stressors. The peculiar lichen morphology demonstrates its remarkable stake in resisting extreme terrestrial conditions and may explain the high resistance of lichens found in astrobiological research.
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Affiliation(s)
- J Meeßen
- Institut für Botanik, Heinrich-Heine Universität HHU, Universitätsstr. 1, 40225, Düsseldorf, Germany.
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Carr CE, Rowedder H, Vafadari C, Lui CS, Cascio E, Zuber MT, Ruvkun G. Radiation resistance of biological reagents for in situ life detection. ASTROBIOLOGY 2013; 13:68-78. [PMID: 23330963 DOI: 10.1089/ast.2012.0869] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
Life on Mars, if it exists, may share a common ancestry with life on Earth derived from meteoritic transfer of microbes between the planets. One means to test this hypothesis is to isolate, detect, and sequence nucleic acids in situ on Mars, then search for similarities to known common features of life on Earth. Such an instrument would require biological and chemical components, such as polymerase and fluorescent dye molecules. We show that reagents necessary for detection and sequencing of DNA survive several analogues of the radiation expected during a 2-year mission to Mars, including proton (H-1), heavy ion (Fe-56, O-18), and neutron bombardment. Some reagents have reduced performance or fail at higher doses. Overall, our findings suggest it is feasible to utilize space instruments with biological components, particularly for mission durations of up to several years in environments without large accumulations of charged particles, such as the surface of Mars, and have implications for the meteoritic transfer of microbes between planets.
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Affiliation(s)
- Christopher E Carr
- Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA
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45
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46
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Belbruno E, Moro-Martín A, Malhotra R, Savransky D. Chaotic exchange of solid material between planetary systems: implications for lithopanspermia. ASTROBIOLOGY 2012; 12:754-774. [PMID: 22897115 PMCID: PMC3440031 DOI: 10.1089/ast.2012.0825] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2011] [Accepted: 05/01/2012] [Indexed: 06/01/2023]
Abstract
We examined a low-energy mechanism for the transfer of meteoroids between two planetary systems embedded in a star cluster using quasi-parabolic orbits of minimal energy. Using Monte Carlo simulations, we found that the exchange of meteoroids could have been significantly more efficient than previously estimated. Our study is relevant to astrobiology, as it addresses whether life on Earth could have been transferred to other planetary systems in the Solar System's birth cluster and whether life on Earth could have been transferred from beyond the Solar System. In the Solar System, the timescale over which solid material was delivered to the region from where it could be transferred via this mechanism likely extended to several hundred million years (as indicated by the 3.8-4.0 Ga epoch of the Late Heavy Bombardment). This timescale could have overlapped with the lifetime of the Solar birth cluster (∼100-500 Myr). Therefore, we conclude that lithopanspermia is an open possibility if life had an early start. Adopting parameters from the minimum mass solar nebula, considering a range of planetesimal size distributions derived from observations of asteroids and Kuiper Belt objects and theoretical coagulation models, and taking into account Oort Cloud formation models, we discerned that the expected number of bodies with mass>10 kg that could have been transferred between the Sun and its nearest cluster neighbor could be of the order of 10(14) to 3·10(16), with transfer timescales of tens of millions of years. We estimate that of the order of 3·10(8)·l (km) could potentially be life-bearing, where l is the depth of Earth's crust in kilometers that was ejected as the result of the early bombardment.
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Affiliation(s)
- Edward Belbruno
- Courant Institute of Mathematical Sciences, New York University, New York, New York, USA
- Department of Astrophysical Sciences, Princeton University, Princeton, New Jersey, USA
| | - Amaya Moro-Martín
- Department of Astrophysical Sciences, Princeton University, Princeton, New Jersey, USA
- Centro de Astrobiología, INTA-CSIC, Spain
| | - Renu Malhotra
- Department of Planetary Sciences, University of Arizona, Tucson, Arizona, USA
| | - Dmitry Savransky
- Mechanical and Aerospace Engineering, Princeton University, Princeton, New Jersey, USA
- Lawrence Livermore National Laboratory, Livermore, California, USA
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Scalzi G, Selbmann L, Zucconi L, Rabbow E, Horneck G, Albertano P, Onofri S. LIFE experiment: isolation of cryptoendolithic organisms from Antarctic colonized sandstone exposed to space and simulated Mars conditions on the international space station. ORIGINS LIFE EVOL B 2012; 42:253-62. [PMID: 22688852 DOI: 10.1007/s11084-012-9282-5] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2011] [Accepted: 04/05/2012] [Indexed: 10/27/2022]
Abstract
Desiccated Antarctic rocks colonized by cryptoendolithic communities were exposed on the International Space Station (ISS) to space and simulated Mars conditions (LiFE-Lichens and Fungi Experiment). After 1.5 years in space samples were retrieved, rehydrated and spread on different culture media. Colonies of a green alga and a pink-coloured fungus developed on Malt-Agar medium; they were isolated from a sample exposed to simulated Mars conditions beneath a 0.1 % T Suprasil neutral density filter and from a sample exposed to space vacuum without solar radiation exposure, respectively. None of the other flight samples showed any growth after incubation. The two organisms able to grow were identified at genus level by Small SubUnit (SSU) and Internal Transcribed Spacer (ITS) rDNA sequencing as Stichococcus sp. (green alga) and Acarospora sp. (lichenized fungal genus) respectively. The data in the present study provide experimental information on the possibility of eukaryotic life transfer from one planet to another by means of rocks and of survival in Mars environment.
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Affiliation(s)
- Giuliano Scalzi
- Department of Ecological and Biological Sciences, University of Tuscia, Largo dell'Università snc, 01100, Viterbo, Italy.
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Wassmann M, Moeller R, Rabbow E, Panitz C, Horneck G, Reitz G, Douki T, Cadet J, Stan-Lotter H, Cockell CS, Rettberg P. Survival of spores of the UV-resistant Bacillus subtilis strain MW01 after exposure to low-earth orbit and simulated martian conditions: data from the space experiment ADAPT on EXPOSE-E. ASTROBIOLOGY 2012; 12:498-507. [PMID: 22680695 DOI: 10.1089/ast.2011.0772] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
In the space experiment "Molecular adaptation strategies of microorganisms to different space and planetary UV climate conditions" (ADAPT), bacterial endospores of the highly UV-resistant Bacillus subtilis strain MW01 were exposed to low-Earth orbit (LEO) and simulated martian surface conditions for 559 days on board the European Space Agency's exposure facility EXPOSE-E, mounted outside the International Space Station. The survival of B. subtilis MW01 spores from both assays (LEO and simulated martian conditions) was determined by a colony-formation assay after retrieval. It was clearly shown that solar extraterrestrial UV radiation (λ≥110 nm) as well as the martian UV spectrum (λ≥200 nm) was the most deleterious factor applied; in some samples only a few spore survivors were recovered from B. subtilis MW01 spores exposed in monolayers. However, if shielded from solar irradiation, about 8% of MW01 spores survived in LEO conditions, and 100% survived in simulated martian conditions, compared to the laboratory controls. The results demonstrate the effect of shielding against the high inactivation potential of extraterrestrial solar UV radiation, which limits the chances of survival of even the highly UV-resistant strain of B. subtilis MW01 in the harsh environments of outer space and the martian surface.
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Affiliation(s)
- Marko Wassmann
- Radiation Biology Department, Institute of Aerospace Medicine, German Aerospace Center (DLR), Cologne, Germany
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Onofri S, de la Torre R, de Vera JP, Ott S, Zucconi L, Selbmann L, Scalzi G, Venkateswaran KJ, Rabbow E, Sánchez Iñigo FJ, Horneck G. Survival of rock-colonizing organisms after 1.5 years in outer space. ASTROBIOLOGY 2012; 12:508-16. [PMID: 22680696 DOI: 10.1089/ast.2011.0736] [Citation(s) in RCA: 93] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Cryptoendolithic microbial communities and epilithic lichens have been considered as appropriate candidates for the scenario of lithopanspermia, which proposes a natural interplanetary exchange of organisms by means of rocks that have been impact ejected from their planet of origin. So far, the hardiness of these terrestrial organisms in the severe and hostile conditions of space has not been tested over extended periods of time. A first long-term (1.5 years) exposure experiment in space was performed with a variety of rock-colonizing eukaryotic organisms at the International Space Station on board the European EXPOSE-E facility. Organisms were selected that are especially adapted to cope with the environmental extremes of their natural habitats. It was found that some-but not all-of those most robust microbial communities from extremely hostile regions on Earth are also partially resistant to the even more hostile environment of outer space, including high vacuum, temperature fluctuation, the full spectrum of extraterrestrial solar electromagnetic radiation, and cosmic ionizing radiation. Although the reported experimental period of 1.5 years in space is not comparable with the time spans of thousands or millions of years believed to be required for lithopanspermia, our data provide first evidence of the differential hardiness of cryptoendolithic communities in space.
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Affiliation(s)
- Silvano Onofri
- Department of Ecological and Biological Sciences, University of Tuscia, Largo dell'Università snc, Viterbo, Italy.
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50
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Moeller R, Reitz G, Nicholson The Protect Team WL, Horneck G. Mutagenesis in bacterial spores exposed to space and simulated martian conditions: data from the EXPOSE-E spaceflight experiment PROTECT. ASTROBIOLOGY 2012; 12:457-468. [PMID: 22680692 DOI: 10.1089/ast.2011.0739] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
As part of the PROTECT experiment of the EXPOSE-E mission on board the International Space Station (ISS), the mutagenic efficiency of space was studied in spores of Bacillus subtilis 168. After 1.5 years' exposure to selected parameters of outer space or simulated martian conditions, the rates of induced mutations to rifampicin resistance (Rif(R)) and sporulation deficiency (Spo(-)) were quantified. In all flight samples, both mutations, Rif(R) and Spo(-), were induced and their rates increased by several orders of magnitude. Extraterrestrial solar UV radiation (>110 nm) as well as simulated martian UV radiation (>200 nm) led to the most pronounced increase (up to nearly 4 orders of magnitude); however, mutations were also induced in flight samples shielded from insolation, which were exposed to the same conditions except solar irradiation. Nucleotide sequencing located the Rif(R) mutations in the rpoB gene encoding the β-subunit of RNA polymerase. Mutations isolated from flight and parallel mission ground reference (MGR) samples were exclusively localized to Cluster I. The 21 Rif(R) mutations isolated from the flight experiment showed all a C to T transition and were all localized to one hotspot: H482Y. In mutants isolated from the MGR, the spectrum was wider with predicted amino acid changes at residues Q469K/L/R, H482D/P/R/Y, and S487L. The data show the unique mutagenic power of space and martian surface conditions as a consequence of DNA injuries induced by solar UV radiation and space vacuum or the low pressure of Mars.
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Affiliation(s)
- Ralf Moeller
- Radiation Biology Department, Institute of Aerospace Medicine, German Aerospace Center (DLR) , Cologne, Germany.
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