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Dos Santos A, Schultz J, Almeida Trapp M, Modolon F, Romanenko A, Kumar Jaiswal A, Gomes L, Rodrigues-Filho E, Rosado AS. Investigating Polyextremophilic Bacteria in Al Wahbah Crater, Saudi Arabia: A Terrestrial Model for Life on Saturn's Moon Enceladus. ASTROBIOLOGY 2024; 24:824-838. [PMID: 39159439 DOI: 10.1089/ast.2024.0017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/21/2024]
Abstract
The study of extremophilic microorganisms has sparked interest in understanding extraterrestrial microbial life. Such organisms are fundamental for investigating life forms on Saturn's icy moons, such as Enceladus, which is characterized by potentially habitable saline and alkaline niches. Our study focused on the salt-alkaline soil of the Al Wahbah crater in Saudi Arabia, where we identified microorganisms that could be used as biological models to understand potential life on Enceladus. The search involved isolating 48 bacterial strains, sequencing the genomes of two thermo-haloalkaliphilic strains, and characterizing them for astrobiological application. A deeper understanding of the genetic composition and functional capabilities of the two novel strains of Halalkalibacterium halodurans provided valuable insights into their survival strategies and the presence of coding genes and pathways related to adaptations to environmental stressors. We also used mass spectrometry with a molecular network approach, highlighting various classes of molecules, such as phospholipids and nonproteinogenic amino acids, as potential biosignatures. These are essential features for understanding life's adaptability under extreme conditions and could be used as targets for biosignatures in upcoming missions exploring Enceladus' orbit. Furthermore, our study reinforces the need to look at new extreme environments on Earth that might contribute to the astrobiology field.
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Affiliation(s)
- Alef Dos Santos
- Department of Chemistry, Federal University of São Carlos, São Carlos, Brazil
- Bioscience Program, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
| | - Júnia Schultz
- Bioscience Program, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
| | - Marilia Almeida Trapp
- Analytical Core Laboratory, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
| | - Fluvio Modolon
- Bioscience Program, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
- Laboratory of Molecular Microbial Ecology, Institute of Microbiology, Federal University of Rio de Janeiro, Rio de Janeiro, Brazil
| | - Andrii Romanenko
- Bioscience Program, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
| | - Arun Kumar Jaiswal
- Post-Graduate Program in Bioinformatics, Institute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte, Brazil
| | - Lucas Gomes
- Post-Graduate Program in Bioinformatics, Institute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte, Brazil
| | | | - Alexandre Soares Rosado
- Bioscience Program, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
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2
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Doran PT, Hayes A, Grasset O, Coustenis A, Prieto-Ballesteros O, Hedman N, Al Shehhi O, Ammannito E, Fujimoto M, Groen F, Moores JE, Mustin C, Olsson-Francis K, Peng J, Praveenkumar K, Rettberg P, Sinibaldi S, Ilyin V, Raulin F, Suzuki Y, Xu K, Whyte LG, Zaitsev M, Buffo J, Kminek G, Schmidt B. The COSPAR planetary protection policy for missions to Icy Worlds: A review of history, current scientific knowledge, and future directions. LIFE SCIENCES IN SPACE RESEARCH 2024; 41:86-99. [PMID: 38670657 DOI: 10.1016/j.lssr.2024.02.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/26/2023] [Revised: 02/03/2024] [Accepted: 02/07/2024] [Indexed: 04/28/2024]
Abstract
Recent discoveries related to the habitability and astrobiological relevance of the outer Solar System have expanded our understanding of where and how life may have originated. As a result, the Icy Worlds of the outer Solar System have become among the highest priority targets for future spacecraft missions dedicated to astrobiology-focused and/or direct life detection objectives. This, in turn, has led to a renewed interest in planetary protection concerns and policies for the exploration of these worlds and has been a topic of discussion within the COSPAR (Committee on Space Research) Panel on Planetary Protection. This paper summarizes the results of those discussions, reviewing the current knowledge and the history of planetary protection considerations for Icy Worlds as well as suggesting ways forward. Based on those discussions, we therefore suggest to (1) Establish a new definition for Icy Worlds for Planetary Protection that captures the outer Solar System moons and dwarf planets like Pluto, but excludes more primitive bodies such as comets, centaurs, and asteroids: Icy Worlds in our Solar System are defined as all bodies with an outermost layer that is believed to be greater than 50 % water ice by volume and have enough mass to assume a nearly round shape. (2) Establish indices for the lower limits of Earth life with regards to water activity (LLAw) and temperature (LLT) and apply them into all areas of the COSPAR Planetary Protection Policy. These values are currently set at 0.5 and -28 °C and were originally established for defining Mars Special Regions; (3) Establish LLT as a parameter to assign categorization for Icy Worlds missions. The suggested categorization will have a 1000-year period of biological exploration, to be applied to all Icy Worlds and not just Europa and Enceladus as is currently the case. (4) Have all missions consider the possibility of impact. Transient thermal anomalies caused by impact would be acceptable so long as there is less than 10-4 probability of a single microbe reaching deeper environments where temperature is >LLT in the period of biological exploration. (5) Restructure or remove Category II* from the policy as it becomes largely redundant with this new approach, (6) Establish that any sample return from an Icy World should be Category V restricted Earth return.
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Affiliation(s)
- P T Doran
- Department of Geology and Geophysics, Louisiana State, Baton Rouge, LA, USA.
| | - A Hayes
- Cornell University, Ithaca, NY, 14853-6801, USA
| | | | - A Coustenis
- LESIA, Paris Observatory, PSL University, CNRS, Paris University, 92195, Meudon Cedex, France
| | - O Prieto-Ballesteros
- Centro de Astrobiología (CAB), CSIC-INTA, 28850, Torrejón de Ardoz, Madrid, Spain
| | - N Hedman
- Committee, Policy and Legal Affairs Section, Office for Outer Space Affairs, United Nations Office at Vienna, Austria
| | | | | | - M Fujimoto
- Japan Aerospace Exploration Agency (JAXA), Institute of Space and Astronautical Science (ISAS), Kanagawa, Japan
| | - F Groen
- Office of Safety and Mission Assurance, NASA Headquarters, Washington, DC, 20546, USA
| | | | - C Mustin
- Centre National des Etudes Spatiales (CNES), France
| | - K Olsson-Francis
- AstrobiologyOU, Faculty of Science, Technology, Engineering and Mathematics, The Open University, Milton Keynes, UK
| | - J Peng
- China National Space Administration, Beijing, China
| | | | - P Rettberg
- German Aerospace Center (DLR), Institute of Aerospace Medicine, Radiation Biology Department, Research Group Astrobiology, 51147, Cologne, Germany
| | - S Sinibaldi
- European Space Agency, ESA-ESTEC, Noordwijk, the Netherlands
| | - V Ilyin
- Institute for Biomedical Problems, Russian Academy of Sciences, Moscow, Russia
| | - F Raulin
- Univ Paris Est Créteil and Université Paris Cité, CNRS, LISA, F-94010, Créteil, France
| | - Y Suzuki
- Department of Earth and Planetary Science, The University of Tokyo,7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan
| | - K Xu
- Laboratory of Space Microbiology, Shenzhou Space Biotechnology Group, Chinese Academy of Space Technology, Beijing, China
| | - L G Whyte
- Department of Natural Resource Sciences, McGill University, Montreal, Canada
| | - M Zaitsev
- Planetary Physics Department, Space Research Inst. of Russian Acad. of Sciences, Moscow, Russia
| | - J Buffo
- Thayer School of Engineering, Dartmouth College, Hanover, NH, USA
| | - G Kminek
- European Space Agency, ESA-ESTEC, Noordwijk, the Netherlands
| | - B Schmidt
- Cornell University, Ithaca, NY, 14853-6801, USA
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3
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Vance SD, Craft KL, Shock E, Schmidt BE, Lunine J, Hand KP, McKinnon WB, Spiers EM, Chivers C, Lawrence JD, Wolfenbarger N, Leonard EJ, Robinson KJ, Styczinski MJ, Persaud DM, Steinbrügge G, Zolotov MY, Quick LC, Scully JEC, Becker TM, Howell SM, Clark RN, Dombard AJ, Glein CR, Mousis O, Sephton MA, Castillo-Rogez J, Nimmo F, McEwen AS, Gudipati MS, Jun I, Jia X, Postberg F, Soderlund KM, Elder CM. Investigating Europa's Habitability with the Europa Clipper. SPACE SCIENCE REVIEWS 2023; 219:81. [PMID: 38046182 PMCID: PMC10687213 DOI: 10.1007/s11214-023-01025-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/22/2022] [Accepted: 11/03/2023] [Indexed: 12/05/2023]
Abstract
The habitability of Europa is a property within a system, which is driven by a multitude of physical and chemical processes and is defined by many interdependent parameters, so that its full characterization requires collaborative investigation. To explore Europa as an integrated system to yield a complete picture of its habitability, the Europa Clipper mission has three primary science objectives: (1) characterize the ice shell and ocean including their heterogeneity, properties, and the nature of surface-ice-ocean exchange; (2) characterize Europa's composition including any non-ice materials on the surface and in the atmosphere, and any carbon-containing compounds; and (3) characterize Europa's geology including surface features and localities of high science interest. The mission will also address several cross-cutting science topics including the search for any current or recent activity in the form of thermal anomalies and plumes, performing geodetic and radiation measurements, and assessing high-resolution, co-located observations at select sites to provide reconnaissance for a potential future landed mission. Synthesizing the mission's science measurements, as well as incorporating remote observations by Earth-based observatories, the James Webb Space Telescope, and other space-based resources, to constrain Europa's habitability, is a complex task and is guided by the mission's Habitability Assessment Board (HAB).
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Affiliation(s)
- Steven D. Vance
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - Kathleen L. Craft
- Applied Physics Laboratory, Johns Hopkins University, Laurel, MD USA
| | - Everett Shock
- School of Earth & Space Exploration and School of Molecular Sciences, Arizona State University, Tempe, AZ USA
| | - Britney E. Schmidt
- Department of Astronomy and Department of Earth & Atmospheric Sciences, Cornell University, Ithaca, NY USA
| | - Jonathan Lunine
- Department of Astronomy and Department of Earth & Atmospheric Sciences, Cornell University, Ithaca, NY USA
| | - Kevin P. Hand
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - William B. McKinnon
- Department of Earth and Planetary Sciences and McDonnell Center for the Space Sciences, Washington University in St. Louis, Saint Louis, MO USA
| | - Elizabeth M. Spiers
- School of Earth and Atmospheric Sciences, Georgia Institute of Technology, Atlanta, GA USA
| | - Chase Chivers
- School of Earth and Atmospheric Sciences, Georgia Institute of Technology, Atlanta, GA USA
- Applied Ocean Physics and Engineering, Woods Hole Oceanographic Institution, Woods Hole, MA USA
| | - Justin D. Lawrence
- School of Earth and Atmospheric Sciences, Georgia Institute of Technology, Atlanta, GA USA
- Honeybee Robotics, Altadena, CA USA
| | - Natalie Wolfenbarger
- Institute for Geophysics, John A. and Katherine G. Jackson School of Geosciences, University of Texas at Austin, Austin, TX USA
| | - Erin J. Leonard
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | | | | | - Divya M. Persaud
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - Gregor Steinbrügge
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - Mikhail Y. Zolotov
- School of Earth & Space Exploration and School of Molecular Sciences, Arizona State University, Tempe, AZ USA
| | | | | | | | - Samuel M. Howell
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | | | - Andrew J. Dombard
- Dept. of Earth and Environmental Sciences, University of Illinois Chicago, Chicago, USA
| | | | - Olivier Mousis
- Aix Marseille Université, CNRS, LAM (Laboratoire d’Astrophysique de Marseille), Marseille, France
| | - Mark A. Sephton
- Impacts and Astromaterials Research Centre, Department of Earth Science and Engineering, Imperial College London, London, United Kingdom
| | | | - Francis Nimmo
- Department of Earth and Planetary Sciences, University of California, Santa Cruz, CA USA
| | - Alfred S. McEwen
- Lunar and Planetary Laboratory, University of Arizona, Tucson, AZ USA
| | - Murthy S. Gudipati
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - Insoo Jun
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - Xianzhe Jia
- Department of Climate and Space Sciences and Engineering, University of Michigan, Ann Arbor, MI USA
| | - Frank Postberg
- Institut für Geologische Wissenschaften, Freie Universität Berlin, Berlin, Germany
| | - Krista M. Soderlund
- Institute for Geophysics, John A. and Katherine G. Jackson School of Geosciences, University of Texas at Austin, Austin, TX USA
| | - Catherine M. Elder
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
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4
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Malaterre C, Ten Kate IL, Baqué M, Debaille V, Grenfell JL, Javaux EJ, Khawaja N, Klenner F, Lara YJ, McMahon S, Moore K, Noack L, Patty CHL, Postberg F. Is There Such a Thing as a Biosignature? ASTROBIOLOGY 2023; 23:1213-1227. [PMID: 37962841 DOI: 10.1089/ast.2023.0042] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/15/2023]
Abstract
The concept of a biosignature is widely used in astrobiology to suggest a link between some observation and a biological cause, given some context. The term itself has been defined and used in several ways in different parts of the scientific community involved in the search for past or present life on Earth and beyond. With the ongoing acceleration in the search for life in distant time and/or deep space, there is a need for clarity and accuracy in the formulation and reporting of claims. Here, we critically review the biosignature concept(s) and the associated nomenclature in light of several problems and ambiguities emphasized by recent works. One worry is that these terms and concepts may imply greater certainty than is usually justified by a rational interpretation of the data. A related worry is that terms such as "biosignature" may be inherently misleading, for example, because the divide between life and non-life-and their observable effects-is fuzzy. Another worry is that different parts of the multidisciplinary community may use non-equivalent or conflicting definitions and conceptions, leading to avoidable confusion. This review leads us to identify a number of pitfalls and to suggest how they can be circumvented. In general, we conclude that astrobiologists should exercise particular caution in deciding whether and how to use the concept of biosignature when thinking and communicating about habitability or life. Concepts and terms should be selected carefully and defined explicitly where appropriate. This would improve clarity and accuracy in the formulation of claims and subsequent technical and public communication about some of the most profound and important questions in science and society. With this objective in mind, we provide a checklist of questions that scientists and other interested parties should ask when assessing any reported detection of a "biosignature" to better understand exactly what is being claimed.
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Affiliation(s)
- Christophe Malaterre
- Département de philosophie, Chaire de recherche du Canada en philosophie des sciences de la vie, Université du Québec à Montréal (UQAM), Montréal, Québec, Canada
- Centre interuniversitaire de recherche sur la science et la technologie (CIRST), Université du Québec à Montréal (UQAM), Montréal, Québec, Canada
| | - Inge Loes Ten Kate
- Department of Earth Sciences, Utrecht University, Utrecht, the Netherlands
| | - Mickael Baqué
- Planetary Laboratories Department, Institute of Planetary Research, German Aerospace Center (DLR), Berlin, Germany
| | - Vinciane Debaille
- Laboratoire G-Time, Université libre de Bruxelles, Brussels, Belgium
| | - John Lee Grenfell
- Department of Extrasolar Planets and Atmospheres, Institute of Planetary Research, German Aerospace Center (DLR), Berlin, Germany
| | - Emmanuelle J Javaux
- Early Life Traces & Evolution-Astrobiology, UR Astrobiology, University of Liège, Liège, Belgium
| | - Nozair Khawaja
- Institute of Geological Sciences, Freie Universität Berlin, Berlin, Germany
| | - Fabian Klenner
- Institute of Geological Sciences, Freie Universität Berlin, Berlin, Germany
- Department of Earth and Space Sciences, University of Washington, Seattle, Washington, USA
| | - Yannick J Lara
- Early Life Traces & Evolution-Astrobiology, UR Astrobiology, University of Liège, Liège, Belgium
| | - Sean McMahon
- UK Centre for Astrobiology, School of Physics and Astronomy, University of Edinburgh, Edinburgh, United Kingdom
- School of GeoSciences, University of Edinburgh, Edinburgh, United Kingdom
| | - Keavin Moore
- Department of Earth & Planetary Sciences, McGill University, Montreal, Québec, Canada
- Trottier Space Institute, McGill University, Montreal, Québec, Canada
| | - Lena Noack
- Institute of Geological Sciences, Freie Universität Berlin, Berlin, Germany
| | - C H Lucas Patty
- Physikalisches Institut, Universität Bern, Bern, Switzerland
- Center for Space and Habitability, Universität Bern, Bern, Switzerland
| | - Frank Postberg
- Institute of Geological Sciences, Freie Universität Berlin, Berlin, Germany
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5
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Tan JSW, Salter TL, Watson JS, Waite JH, Sephton MA. Organic Biosignature Degradation in Hydrothermal and Serpentinizing Environments: Implications for Life Detection on Icy Moons and Mars. ASTROBIOLOGY 2023; 23:1045-1055. [PMID: 37506324 DOI: 10.1089/ast.2022.0144] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/30/2023]
Abstract
Evidence of liquid water is a primary indicator of habitability on the icy moons in our outer solar system as well as on terrestrial planets such as Mars. If liquid water-containing environments host life, some of its organic remains can be fossilized and preserved as organic biosignatures. However, inorganic materials may also be present and water-assisted organic-inorganic reactions can transform the organic architecture of biological remains. Our understanding of the fate of these organic remains can be assisted by experimental simulations that monitor the chemical changes that occur in microbial organic matter due to the presence of water and minerals. We performed hydrothermal experiments at temperatures between 100°C and 300°C involving lipid-rich microbes and natural serpentinite mineral mixtures generated by the subaqueous hydrothermal alteration of ultramafic rock. The products reveal what the signals of life may look like when subjected to water-organic-inorganic reactions. Straight- and branched-chain lipids in unaltered samples are joined by cyclization and aromatization products in hydrothermally altered samples. Hydrothermal reactions produce distinct products that are not present in the starting materials, including small, single-ring, heteroatomic, and aromatic compounds such as indoles and phenols. Hydrothermal reactions in the presence of serpentinite minerals lead to significant reduction of these organic structures and their replacement by diketopiperazines (DKPs) and dihydropyrazines (DHPs), which may be compounds that are distinct to organic-inorganic reactions. Given that the precursors of DKPs and DHPs are normally lost during early diagenesis, the presence of these compounds can be an indicator of coexisting recent life and hydrothermal processing in the presence of minerals. However, laboratory experiments reveal that the formation and preservation of these compounds can only occur within a distinct temperature window. Our findings are relevant to life detection missions that aim to access hydrothermal and serpentinizing environments in the subsurfaces of icy moons and Mars.
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Affiliation(s)
- Jonathan S W Tan
- Impacts and Astromaterials Research Centre, Department of Earth Science and Engineering, Imperial College London, London, United Kingdom
| | - Tara L Salter
- Impacts and Astromaterials Research Centre, Department of Earth Science and Engineering, Imperial College London, London, United Kingdom
| | - Jonathan S Watson
- Impacts and Astromaterials Research Centre, Department of Earth Science and Engineering, Imperial College London, London, United Kingdom
| | - J Hunter Waite
- Space Science and Engineering Division, Southwest Research Institute, San Antonio, Texas, USA
| | - Mark A Sephton
- Impacts and Astromaterials Research Centre, Department of Earth Science and Engineering, Imperial College London, London, United Kingdom
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6
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Elsaesser A, Burr DJ, Mabey P, Urso RG, Billi D, Cockell C, Cottin H, Kish A, Leys N, van Loon JJWA, Mateo-Marti E, Moissl-Eichinger C, Onofri S, Quinn RC, Rabbow E, Rettberg P, de la Torre Noetzel R, Slenzka K, Ricco AJ, de Vera JP, Westall F. Future space experiment platforms for astrobiology and astrochemistry research. NPJ Microgravity 2023; 9:43. [PMID: 37308480 DOI: 10.1038/s41526-023-00292-1] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2022] [Accepted: 05/25/2023] [Indexed: 06/14/2023] Open
Abstract
Space experiments are a technically challenging but a scientifically important part of astrobiology and astrochemistry research. The International Space Station (ISS) is an excellent example of a highly successful and long-lasting research platform for experiments in space, that has provided a wealth of scientific data over the last two decades. However, future space platforms present new opportunities to conduct experiments with the potential to address key topics in astrobiology and astrochemistry. In this perspective, the European Space Agency (ESA) Topical Team Astrobiology and Astrochemistry (with feedback from the wider scientific community) identifies a number of key topics and summarizes the 2021 "ESA SciSpacE Science Community White Paper" for astrobiology and astrochemistry. We highlight recommendations for the development and implementation of future experiments, discuss types of in situ measurements, experimental parameters, exposure scenarios and orbits, and identify knowledge gaps and how to advance scientific utilization of future space-exposure platforms that are either currently under development or in an advanced planning stage. In addition to the ISS, these platforms include CubeSats and SmallSats, as well as larger platforms such as the Lunar Orbital Gateway. We also provide an outlook for in situ experiments on the Moon and Mars, and welcome new possibilities to support the search for exoplanets and potential biosignatures within and beyond our solar system.
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Affiliation(s)
- Andreas Elsaesser
- Freie Universitaet Berlin, Department of Physics, Arnimallee 14, 14195, Berlin, Germany.
| | - David J Burr
- Freie Universitaet Berlin, Department of Physics, Arnimallee 14, 14195, Berlin, Germany
| | - Paul Mabey
- Freie Universitaet Berlin, Department of Physics, Arnimallee 14, 14195, Berlin, Germany
| | | | - Daniela Billi
- Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica, 00133, Rome, Italy
| | - Charles Cockell
- UK Centre for Astrobiology, School of Physics and Astronomy, University of Edinburgh, Edinburgh, UK
| | - Hervé Cottin
- Univ Paris Est Creteil and Université Paris Cité, CNRS, LISA, F-94010, Créteil, France
| | - Adrienne Kish
- Muséum National d'Histoire Naturelle (MNHN), Molécules de Communication et Adaptation des Microorganismes (MCAM), CNRS, 57 rue Cuvier, 75005, Paris, France
| | - Natalie Leys
- Interdisciplinary Biosciences Group, Belgian Nuclear Research Centre, SCK CEN, 2400, Mol, Belgium
| | - Jack J W A van Loon
- Dutch Experiment Support Center (DESC), Department of Oral and Maxillofacial Surgery/Oral Pathology, Amsterdam Bone Center (ABC), Amsterdam UMC Location VU University Medical Center (VUmc) & Academic Centre for Dentistry Amsterdam (ACTA), Gustav Mahlerlaan 3004, 1081 LA, Amsterdam, The Netherlands
| | - Eva Mateo-Marti
- Centro de Astrobiología (CAB), CSIC-INTA, Carretera de Ajalvir km 4, 28850 Torrejón de Ardoz, Madrid, Spain
| | - Christine Moissl-Eichinger
- Institute of Hygiene, Microbiology and Environmental Medicine, Medical University of Graz, Neue Stiftingtalstraße 6, 8010, Graz, Austria
| | - Silvano Onofri
- Department of Ecological and Biological Sciences (DEB), University of Tuscia, Largo dell'Università snc, 01100, Viterbo, Italy
| | | | - Elke Rabbow
- German Aerospace Center (DLR), Institute of Aerospace Medicine, Radiation Biology Department, Linder Höhe, 51147, Cologne, Germany
| | - Petra Rettberg
- German Aerospace Center (DLR), Institute of Aerospace Medicine, Radiation Biology Department, Linder Höhe, 51147, Cologne, Germany
| | - Rosa de la Torre Noetzel
- Instituto Nacional de Técnica Aeroespacial (INTA), Departamento de Observación de la Tierra, 28850 Torrejón de Ardoz, Madrid, Spain
| | - Klaus Slenzka
- KS-3D-3D-Printing and Laser Services, In der Heide 16, 27243, Gross Ippener, Germany
| | | | - Jean-Pierre de Vera
- German Aerospace Center (DLR), Space Operations and Astronaut Training, Microgravity User Support Center (MUSC), Linder Höhe, 51147, Cologne, Germany
| | - Frances Westall
- Centre National de la Recherche Scientifique (CNRS), Centre de Biophysique Moléculaire, Orléans, France
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7
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The ORIGIN Space Instrument for Detecting Biosignatures and Habitability Indicators on a Venus Life Finder Mission. AEROSPACE 2022. [DOI: 10.3390/aerospace9060312] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Recent and past observations of chemical and physical peculiarities in the atmosphere of Venus have renewed speculations about the existence of life in its clouds. To find signs of Venusian life, a dedicated astrobiological space exploration mission is required, and for this reason the Venus Life Finder mission is currently being prepared. A Venus Life Finder mission will require dedicated and specialized instruments to hunt for biosignatures and habitability indicators. In this contribution, we present the ORIGIN space instrument, a laser desorption/laser ablation ionization mass spectrometer. This instrument is designed to detect large, non-volatile molecules, specifically biomolecules such as amino acids and lipids. At the same time, it can also be used in ablation mode for elemental composition analysis. Recent studies with this space prototype instrument of amino acids, polycyclic aromatic hydrocarbons, lipids, salts, metals, sulphur isotopes, and microbial elemental composition are discussed in the context of studies of biosignatures and habitability indicators in Venus’s atmosphere. The implementation of the ORIGIN instrument into a Venus Life Finder mission is discussed, emphasizing the low weight and low power consumption of the instrument. An instrument design and sample handling system are presented that make optimal use of the capabilities of this instrument. ORIGIN is a highly versatile instrument with proven capabilities to investigate and potentially resolve many of the outstanding questions about the atmosphere of Venus and the presence of life in its clouds.
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8
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Salter TL, Magee BA, Waite JH, Sephton MA. Mass Spectrometric Fingerprints of Bacteria and Archaea for Life Detection on Icy Moons. ASTROBIOLOGY 2022; 22:143-157. [PMID: 35021862 DOI: 10.1089/ast.2020.2394] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
The icy moons of the outer Solar System display evidence of subsurface liquid water and, therefore, potential habitability for life. Flybys of Saturn's moon Enceladus by the Cassini spacecraft have provided measurements of material from plumes that suggest hydrothermal activity and the presence of organic matter. Jupiter's moon Europa may have similar plumes and is the target for the forthcoming Europa Clipper mission that carries a high mass resolution and high sensitivity mass spectrometer, called the MAss Spectrometer for Planetary EXploration (MASPEX), with the capability for providing detailed characterization of any organic materials encountered. We have performed a series of experiments using pyrolysis-gas chromatography-mass spectrometry to characterize the mass spectrometric fingerprints of microbial life. A range of extremophile Archaea and Bacteria have been analyzed and the laboratory data converted to MASPEX-type signals. Molecular characteristics of protein, carbohydrate, and lipid structures were detected, and the characteristic fragmentation patterns corresponding to these different biological structures were identified. Protein pyrolysis fragments included phenols, nitrogen heterocycles, and cyclic dipeptides. Oxygen heterocycles, such as furans, were detected from carbohydrates. Our data reveal how mass spectrometry on Europa Clipper can aid in the identification of the presence of life, by looking for characteristic bacterial fingerprints that are similar to those from simple Earthly organisms.
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Affiliation(s)
- Tara L Salter
- Impacts and Astromaterials Research Centre, Department of Earth Science and Engineering, Imperial College London, London, United Kingdom
| | - Brian A Magee
- Space Science and Engineering Division, Southwest Research Institute, Boulder, Colorado, USA
| | - J Hunter Waite
- Space Science and Engineering Division, Southwest Research Institute, San Antonio, Texas, USA
| | - Mark A Sephton
- Impacts and Astromaterials Research Centre, Department of Earth Science and Engineering, Imperial College London, London, United Kingdom
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9
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Royle SH, Watson JS, Sephton MA. Transformation of Cyanobacterial Biomolecules by Iron Oxides During Flash Pyrolysis: Implications for Mars Life-Detection Missions. ASTROBIOLOGY 2021; 21:1363-1386. [PMID: 34402652 DOI: 10.1089/ast.2020.2428] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Answering the question of whether life ever existed on Mars is a key goal of both NASA's and ESA's imminent Mars rover missions. The obfuscatory effects of oxidizing salts, such as perchlorates and sulfates, on organic matter during thermal decomposition analysis techniques are well established. Less well studied are the transformative effects of iron oxides and (oxy)hydroxides, which are present in great abundances in the martian regolith. We examined the products of flash pyrolysis-gas chromatography-mass spectrometry (a technique analogous to the thermal techniques employed by past, current, and future landed Mars missions) which form when the cyanobacteria Arthrospira platensis are heated in the presence of a variety of Mars-relevant iron-bearing minerals. We found that iron oxides/(oxy)hydroxides have transformative effects on the pyrolytic products of cyanobacterial biomolecules. Both the abundance and variety of molecular species detected were decreased as iron substrates transformed biomolecules, by both oxidative and reductive processes, into lower fidelity alkanes, aromatic and aryl-bonded hydrocarbons. Despite the loss of fidelity, a suite that contains mid-length alkanes and polyaromatic hydrocarbons and/or aryl-bonded molecules in iron-rich samples subjected to pyrolysis may allude to the transformation of cyanobacterially derived mid-long chain length fatty acids (particularly unsaturated fatty acids) originally present in the sample. Hematite was found to be the iron oxide with the lowest transformation potential, and because this iron oxide has a high affinity for codeposition of organic matter and preservation over geological timescales, sampling at Mars should target sediments/strata that have undergone a diagenetic history encouraging the dehydration, dihydroxylation, and oxidation of more reactive iron-bearing phases to hematite by looking for (mineralogical) evidence of the activity of oxidizing, acidic/neutral, and either hot or long-lived fluids.
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Affiliation(s)
- Samuel H Royle
- Impacts and Astromaterials Research Centre, Department of Earth Science and Engineering, Imperial College London, London, United Kingdom
| | - Jonathan S Watson
- Impacts and Astromaterials Research Centre, Department of Earth Science and Engineering, Imperial College London, London, United Kingdom
| | - Mark A Sephton
- Impacts and Astromaterials Research Centre, Department of Earth Science and Engineering, Imperial College London, London, United Kingdom
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Abrahamsson V, Henderson BL, Herman J, Zhong F, Lin Y, Kanik I, Nixon CA. Extraction and Separation of Chiral Amino Acids for Life Detection on Ocean Worlds Without Using Organic Solvents or Derivatization. ASTROBIOLOGY 2021; 21:575-586. [PMID: 33533680 DOI: 10.1089/ast.2020.2298] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
In situ instrumentation that can detect amino acids at parts-per-billion concentration levels and distinguish an enantiomeric excess of either d- or l-amino acids is vital for future robotic life-detection missions to promising targets in our solar system. In this article, a novel chiral amino acid analysis method is described, which reduces the risk of organic contamination and spurious signals from by-products by avoiding organic solvents and organic additives. Online solid-phase extraction, chiral liquid chromatography, and mass spectrometry were used for automated analysis of amino acids from solid and aqueous environmental samples. Carbonated water (pH ∼3, ∼5 wt % CO2 achieved at 6 MPa) was used as the extraction solvent for solid samples at 150°C and as the mobile phase at ambient temperature for chiral chromatographic separation. Of 18 enantiomeric amino acids, 5 enantiomeric pairs were separated with a chromatographic resolution >1.5 and 12 pairs with a resolution >0.7. The median lower limit of detection of amino acids was 2.5 μg/L, with the lowest experimentally verified as low as 0.25 μg/L. Samples from a geyser site (Great Fountain Geyser) and a geothermal spring site (Lemon Spring) in Yellowstone National Park were analyzed to demonstrate the viability of the method for future in situ missions to Ocean Worlds.
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Affiliation(s)
- Victor Abrahamsson
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
| | - Bryana L Henderson
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
| | - Julia Herman
- Department of Chemistry, Dartmouth College, Hanover, New Hampshire, USA
| | - Fang Zhong
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
| | - Ying Lin
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
| | - Isik Kanik
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
- Icy Worlds, NASA Astrobiology Institute, Pasadena, California, USA
| | - Conor A Nixon
- NASA Goddard Space Flight Center, Greenbelt, Maryland, USA
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11
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Jaramillo-Botero A, Cable ML, Hofmann AE, Malaska M, Hodyss R, Lunine J. Understanding Hypervelocity Sampling of Biosignatures in Space Missions. ASTROBIOLOGY 2021; 21:421-442. [PMID: 33749334 PMCID: PMC7994429 DOI: 10.1089/ast.2020.2301] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2020] [Accepted: 11/09/2020] [Indexed: 05/08/2023]
Abstract
The atomic-scale fragmentation processes involved in molecules undergoing hypervelocity impacts (HVIs; defined as >3 km/s) are challenging to investigate via experiments and still not well understood. This is particularly relevant for the consistency of biosignals from small-molecular-weight neutral organic molecules obtained during solar system robotic missions sampling atmospheres and plumes at hypervelocities. Experimental measurements to replicate HVI effects on neutral molecules are challenging, both in terms of accelerating uncharged species and isolating the multiple transition states over very rapid timescales (<1 ps). Nonequilibrium first-principles-based simulations extend the range of what is possible with experiments. We report on high-fidelity simulations of the fragmentation of small organic biosignature molecules over the range v = 1-12 km/s, and demonstrate that the fragmentation fraction is a sensitive function of velocity, impact angle, molecular structure, impact surface material, and the presence of surrounding ice shells. Furthermore, we generate interpretable fragmentation pathways and spectra for velocity values above the fragmentation thresholds and reveal how organic molecules encased in ice grains, as would likely be the case for those in "ocean worlds," are preserved at even higher velocities than bare molecules. Our results place ideal spacecraft encounter velocities between 3 and 5 km/s for bare amino and fatty acids and within 4-6 km/s for the same species encased in ice grains and predict the onset of organic fragmentation in ice grains at >5 km/s, both consistent with recent experiments exploring HVI effects using impact-induced ionization and analysis via mass spectrometry and from the analysis of Enceladus organics in Cassini Data. From nanometer-sized ice Ih clusters, we establish that HVI energy is dissipated by ice casings through thermal resistance to the impact shock wave and that an upper fragmentation velocity limit exists at which ultimately any organic contents will be cleaved by the surrounding ice-this provides a fundamental path to characterize micrometer-sized ice grains. Altogether, these results provide quantifiable insights to bracket future instrument design and mission parameters.
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Affiliation(s)
- Andres Jaramillo-Botero
- Chemistry and Chemical Engineering Division, California Institute of Technology, Pasadena, California, USA
| | - Morgan L. Cable
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
| | - Amy E. Hofmann
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
| | - Michael Malaska
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
| | - Robert Hodyss
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
| | - Jonathan Lunine
- Department of Astronomy and Carl Sagan Institute, Cornell University, Ithaca, New York, USA
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12
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Xiao X, Zhang Y, Wang F. Hydrostatic pressure is the universal key driver of microbial evolution in the deep ocean and beyond. ENVIRONMENTAL MICROBIOLOGY REPORTS 2021; 13:68-72. [PMID: 33398931 DOI: 10.1111/1758-2229.12915] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2020] [Accepted: 12/04/2020] [Indexed: 06/12/2023]
Affiliation(s)
- Xiang Xiao
- State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, 200240, China
- International Center for Deep Life Investigation (IC-DLI), Shanghai Jiao Tong University, China
- Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai, Guangdong, China
| | - Yu Zhang
- International Center for Deep Life Investigation (IC-DLI), Shanghai Jiao Tong University, China
- School of Oceanography, Shanghai Jiao Tong University, 1954 Huashan Rd., Shanghai, 200030, China
| | - Fengping Wang
- International Center for Deep Life Investigation (IC-DLI), Shanghai Jiao Tong University, China
- Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai, Guangdong, China
- School of Oceanography, Shanghai Jiao Tong University, 1954 Huashan Rd., Shanghai, 200030, China
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13
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Mielczarek P, Silberring J, Smoluch M. MINIATURIZATION IN MASS SPECTROMETRY. MASS SPECTROMETRY REVIEWS 2020; 39:453-470. [PMID: 31793697 DOI: 10.1002/mas.21614] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2019] [Accepted: 11/14/2019] [Indexed: 06/10/2023]
Abstract
Expectations for continuous miniaturization in mass spectrometry are not declining for years. Portable instruments are highly welcome by the industry, science, space agencies, forensic laboratories, and many other units. All are striving for the small, cheap, and as good as possible instruments. This review describes the recent developments of miniature mass spectrometers and also provides selected applications where these devices are used. Upcoming perspectives of further development are also discussed. @ 2019 John Wiley & Sons Ltd. Mass Spec Rev.
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Affiliation(s)
- Przemyslaw Mielczarek
- Department of Biochemistry and Neurobiology, Faculty of Materials Science and Ceramics, AGH University of Science and Technology, Mickiewicza 30, 30-059, Krakow, Poland
- Laboratory of Proteomics and Mass Spectrometry, Maj Institute of Pharmacology, Polish Academy of Sciences, Smetna 12, 31-343, Krakow, Poland
| | - Jerzy Silberring
- Department of Biochemistry and Neurobiology, Faculty of Materials Science and Ceramics, AGH University of Science and Technology, Mickiewicza 30, 30-059, Krakow, Poland
- Centre of Polymer and Carbon Materials, Polish Academy of Sciences, Curie-Sklodowskiej St. 34, 41-819, Zabrze, Poland
| | - Marek Smoluch
- Department of Biochemistry and Neurobiology, Faculty of Materials Science and Ceramics, AGH University of Science and Technology, Mickiewicza 30, 30-059, Krakow, Poland
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Waller SE, Belousov A, Kidd RD, Nikolić D, Madzunkov SM, Wiley JS, Darrach MR. Chemical Ionization Mass Spectrometry: Applications for the In Situ Measurement of Nonvolatile Organics at Ocean Worlds. ASTROBIOLOGY 2019; 19:1196-1210. [PMID: 31347911 DOI: 10.1089/ast.2018.1961] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
A new technique that has applications for the detection of nonvolatile organics on Ocean Worlds has been developed. Here, liquid mixtures of fatty acids (FAs) and/or amino acids (AAs) are introduced directly into a miniature quadrupole ion trap mass spectrometer (QITMS) developed at Jet Propulsion Laboratory and analyzed. Two ionization methods, electron impact and chemical ionization (EI and CI, respectively), are compared and contrasted. Further, multiple CI reagents are tested to explore their potential to "soften" ionization of FAs and AAs. Both EI and CI yield mass spectra that bear signatures of FAs or AAs; however, soft CI yields significantly cleaner mass spectra that are easier to interpret. The combination of soft CI with tandem mass spectrometry (MS/MS) has also been demonstrated for AAs, generating "fingerprint" mass spectra of fragments from protonated parent ions. To mimic potential Ocean World conditions, water is used as the primary collision gas in MS/MS experiments. This technique has the potential for the in situ analysis of molecules in the cryogenic plumes of Ocean Worlds (e.g., Enceladus) and comets with the ultimate goal of detecting potential biosignatures.
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Affiliation(s)
- Sarah E Waller
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | - Anton Belousov
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | - Richard D Kidd
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | - Dragan Nikolić
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | - Stojan M Madzunkov
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | - Joshua S Wiley
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | - Murray R Darrach
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
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Royle SH, Watson JS, Zhang Y, Chatzitheoklitos G, Sephton MA. Solid Phase Micro Extraction: Potential for Organic Contamination Control for Planetary Protection of Life-Detection Missions to the Icy Moons of the Outer Solar System. ASTROBIOLOGY 2019; 19:1153-1166. [PMID: 31216175 DOI: 10.1089/ast.2018.1968] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Conclusively detecting, or ruling out the possibility of, life on the icy moons of the outer Solar System will require spacecraft missions to undergo rigorous planetary protection and contamination control procedures to achieve extremely low levels of organic terrestrial contamination. Contamination control is necessary to avoid forward contamination of the body of interest and to avoid the detection of false-positive signals, which could either mask indigenous organic chemistry of interest or cause an astrobiological false alarm. Here we test a new method for rapidly and inexpensively assessing the organic cleanliness of spaceflight hardware surfaces using solid phase micro extraction (SPME) fibers to directly swab surfaces. The results suggest that the method is both time and cost efficient. The SPME-gas chromatography-mass spectrometry (SPME-GC-MS) method is sensitive to common midweight, nonpolar contaminant compounds, for example, aliphatic and aromatic hydrocarbons, which are common contaminants in laboratory settings. While we demonstrate the potential of SPME for surface sampling, the GC-MS instrumentation restricts the SPME-GC-MS technique's sensitivity to larger polar and nonvolatile compounds. Although not used in this study, to increase the potential range of detectable compounds, SPME can also be used in conjunction with high-performance liquid chromatography/liquid chromatography-mass spectrometry systems suitable for polar analytes (Kataoka et al., 2000). Thus, our SPME method presents an opportunity to monitor organic contamination in a relatively rapid and routine way that produces information-rich data sets.
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Affiliation(s)
- Samuel H Royle
- Impacts and Astromaterials Research Centre, Earth Science and Engineering, South Kensington Campus, Imperial College London, London, UK
| | - Jonathan S Watson
- Impacts and Astromaterials Research Centre, Earth Science and Engineering, South Kensington Campus, Imperial College London, London, UK
| | - Yuting Zhang
- Impacts and Astromaterials Research Centre, Earth Science and Engineering, South Kensington Campus, Imperial College London, London, UK
| | - Georgios Chatzitheoklitos
- Impacts and Astromaterials Research Centre, Earth Science and Engineering, South Kensington Campus, Imperial College London, London, UK
| | - Mark A Sephton
- Impacts and Astromaterials Research Centre, Earth Science and Engineering, South Kensington Campus, Imperial College London, London, UK
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