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Scutt CP. Model Species to Investigate the Origin of Flowers. Methods Mol Biol 2023; 2686:83-109. [PMID: 37540355 DOI: 10.1007/978-1-0716-3299-4_4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/05/2023]
Abstract
The angiosperms, or flowering plants, arose at least 135 million years ago (Ma) and rapidly diversified to form over 300,000 species alive today. This group appears, however, to have separated from its closest living relatives, the extant gymnosperms, much earlier: over 300 Ma. Representatives of basally-diverging angiosperm lineages are of key importance to studies aimed at reconstructing the most recent common ancestor of living angiosperms, including its morphological, anatomical, eco-physiological and molecular aspects. Furthermore, evo-devo comparisons of angiosperms with living gymnosperms may help to determine how the many novel aspects of angiosperms, including those of the flower, first came about. This chapter reviews literature on the origin of angiosperms and focusses on basally-diverging angiosperms and gymnosperms that show advantages as potential experimental models, reviewing information and protocols for the use of these species in an evo-devo context. The final section suggests a means by which data from living and fossil groups could be integrated to better elucidate evolutionary events that took place on the long stem-lineage that apparently preceded the radiation of living angiosperms.
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Affiliation(s)
- Charles P Scutt
- Laboratoire Reproduction et Développement des Plantes, Université de Lyon, ENS de Lyon, UCB Lyon-1, CNRS, INRA, Lyon, France.
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Dalziell EL, Baskin CC, Baskin JM, Young RE, Dixon KW, Merritt DJ. Morphophysiological dormancy in the basal angiosperm order Nymphaeales. ANNALS OF BOTANY 2019; 123:95-106. [PMID: 30052753 PMCID: PMC6344092 DOI: 10.1093/aob/mcy142] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2018] [Accepted: 07/04/2018] [Indexed: 06/08/2023]
Abstract
BACKGROUND AND AIMS Substantial evidence supports the hypothesis that morphophysiological dormancy (MPD) is the basal kind of seed dormancy in the angiosperms. However, only physiological dormancy (PD) is reported in seeds of the ANA-grade genus Nymphaea. The primary aim of this study was to determine the kind of dormancy in seeds of six species of Nymphaea from the wet-dry tropics of Australia. METHODS The effects of temperature, light and germination stimulants on germination were tested on multiple collections of seeds of N. immutabilis, N. lukei, N. macrosperma, N. ondinea, N. pubescens and N. violacea. Embryo growth prior to hypocotyl emergence was monitored. KEY RESULTS Germination was generally <10 % after 28 d in control treatments. Germination percentage was highest at 30 or 35 °C for seeds exposed to light and treated with ethylene or in anoxic conditions in sealed vials of water, and it differed significantly between collections of N. lukei, N. macrosperma and N. violacea. Seeds of N. pubescens did not germinate under any of the conditions. Embryo growth (8-37 % in length) occurred before hypocotyl emergence (germination) in seeds of the five species that germinated. CONCLUSIONS Fresh seeds were dormant, and the amount of pregermination embryo growth in seeds of N. lukei and N. immutabilis was relatively small, while in seeds of N. macrosperma, N. ondinea and N. violacea it was relatively large. Thus, seeds of N. lukei and N. immutabilis had PD and those of N. macrosperma, N. ondinea and N. violacea had MPD. Overall, we found that seeds in the most phylogenetically derived clades within Nymphaea have MPD, suggesting that PD is the most likely basal trait within the Nymphaeales. This study also highlights the broad range of dormancy types and germination strategies in the ANA-grade angiosperms.
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Affiliation(s)
- Emma L Dalziell
- Kings Park Science, Department of Biodiversity, Conservation and Attractions, Kings Park, WA, Australia
- School of Molecular and Life Sciences, Curtin University, Bentley, WA, Australia
- School of Biological Sciences, The University of Western Australia, Crawley, WA, Australia
| | - Carol C Baskin
- Department of Biology, University of Kentucky, Lexington, KY, USA
- Department of Plant and Soil Sciences, University of Kentucky, Lexington, KY, USA
| | - Jerry M Baskin
- Department of Biology, University of Kentucky, Lexington, KY, USA
| | - Renee E Young
- School of Molecular and Life Sciences, Curtin University, Bentley, WA, Australia
| | - Kingsley W Dixon
- School of Molecular and Life Sciences, Curtin University, Bentley, WA, Australia
| | - David J Merritt
- Kings Park Science, Department of Biodiversity, Conservation and Attractions, Kings Park, WA, Australia
- School of Biological Sciences, The University of Western Australia, Crawley, WA, Australia
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Tournebize R, Manel S, Vigouroux Y, Munoz F, de Kochko A, Poncet V. Two disjunct Pleistocene populations and anisotropic postglacial expansion shaped the current genetic structure of the relict plant Amborella trichopoda. PLoS One 2017; 12:e0183412. [PMID: 28820899 PMCID: PMC5562301 DOI: 10.1371/journal.pone.0183412] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2017] [Accepted: 08/03/2017] [Indexed: 12/04/2022] Open
Abstract
Past climate fluctuations shaped the population dynamics of organisms in space and time, and have impacted their present intra-specific genetic structure. Demo-genetic modelling allows inferring the way past demographic and migration dynamics have determined this structure. Amborella trichopoda is an emblematic relict plant endemic to New Caledonia, widely distributed in the understory of non-ultramafic rainforests. We assessed the influence of the last glacial climates on the demographic history and the paleo-distribution of 12 Amborella populations covering the whole current distribution. We performed coalescent genetic modelling of these dynamics, based on both whole-genome resequencing and microsatellite genotyping data. We found that the two main genetic groups of Amborella were shaped by the divergence of two ancestral populations during the last glacial maximum. From 12,800 years BP, the South ancestral population has expanded 6.3-fold while the size of the North population has remained stable. Recent asymmetric gene flow between the groups further contributed to the phylogeographical pattern. Spatially explicit coalescent modelling allowed us to estimate the location of ancestral populations with good accuracy (< 22 km) and provided indications regarding the mid-elevation pathways that facilitated post-glacial expansion.
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Affiliation(s)
- Rémi Tournebize
- UMR DIADE, Institut de Recherche pour le développement, University of Montpellier, Montpellier, France
| | - Stéphanie Manel
- UMR CEFE, Ecole Pratique des Hautes Etudes, PSL Research University, CNRS, University of Montpellier, Montpellier SupAgro, IRD, INRA, Montpellier, France
| | - Yves Vigouroux
- UMR DIADE, Institut de Recherche pour le développement, University of Montpellier, Montpellier, France
| | - François Munoz
- UMR AMAP, University of Montpellier, Montpellier, France
- French Institute of Pondicherry, Pondicherry, India
| | - Alexandre de Kochko
- UMR DIADE, Institut de Recherche pour le développement, University of Montpellier, Montpellier, France
| | - Valérie Poncet
- UMR DIADE, Institut de Recherche pour le développement, University of Montpellier, Montpellier, France
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Villegente M, Marmey P, Job C, Galland M, Cueff G, Godin B, Rajjou L, Balliau T, Zivy M, Fogliani B, Sarramegna-Burtet V, Job D. A Combination of Histological, Physiological, and Proteomic Approaches Shed Light on Seed Desiccation Tolerance of the Basal Angiosperm Amborella trichopoda. Proteomes 2017; 5:E19. [PMID: 28788068 PMCID: PMC5620536 DOI: 10.3390/proteomes5030019] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2017] [Revised: 07/22/2017] [Accepted: 07/25/2017] [Indexed: 12/13/2022] Open
Abstract
Desiccation tolerance allows plant seeds to remain viable in a dry state for years and even centuries. To reveal potential evolutionary processes of this trait, we have conducted a shotgun proteomic analysis of isolated embryo and endosperm from mature seeds of Amborella trichopoda, an understory shrub endemic to New Caledonia that is considered to be the basal extant angiosperm. The present analysis led to the characterization of 415 and 69 proteins from the isolated embryo and endosperm tissues, respectively. The role of these proteins is discussed in terms of protein evolution and physiological properties of the rudimentary, underdeveloped, Amborella embryos, notably considering that the acquisition of desiccation tolerance corresponds to the final developmental stage of mature seeds possessing large embryos.
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Affiliation(s)
- Matthieu Villegente
- Institut des Sciences Exactes et Appliquées (EA 7484), Université de Nouvelle-Calédonie, BP R4, 98851 Nouméa, Nouvelle-Calédonie.
| | - Philippe Marmey
- Institut de recherche pour le développement (IRD), UMR Diversité, Adaptation et Développement des plantes (DIADE), BP A5, 98848 Nouméa Cedex, Nouvelle-Calédonie.
| | - Claudette Job
- Centre National de la Recherche Scientifique (CNRS), CNRS-Université Claude Bernard Lyon-Institut National des Sciences Appliquées-Bayer CropScience (UMR5240), Bayer CropScience, F-69263 Lyon CEDEX 9, France.
| | - Marc Galland
- IJPB, Institut Jean-Pierre Bourgin (Institut National de la Rechercherche Agronomique(INRA), AgroParisTech, CNRS, Université Paris-Saclay) ; « Saclay Plant Sciences (SPS) » - RD10, F-78026 Versailles, France.
| | - Gwendal Cueff
- IJPB, Institut Jean-Pierre Bourgin (Institut National de la Rechercherche Agronomique(INRA), AgroParisTech, CNRS, Université Paris-Saclay) ; « Saclay Plant Sciences (SPS) » - RD10, F-78026 Versailles, France.
- AgroParisTech, Département « Science de la Vie et Santé », Unité de Formation-Recherche en Physiologie végétale, F-75231 Paris, France.
| | - Béatrice Godin
- IJPB, Institut Jean-Pierre Bourgin (Institut National de la Rechercherche Agronomique(INRA), AgroParisTech, CNRS, Université Paris-Saclay) ; « Saclay Plant Sciences (SPS) » - RD10, F-78026 Versailles, France.
- AgroParisTech, Département « Science de la Vie et Santé », Unité de Formation-Recherche en Physiologie végétale, F-75231 Paris, France.
| | - Loïc Rajjou
- IJPB, Institut Jean-Pierre Bourgin (Institut National de la Rechercherche Agronomique(INRA), AgroParisTech, CNRS, Université Paris-Saclay) ; « Saclay Plant Sciences (SPS) » - RD10, F-78026 Versailles, France.
- AgroParisTech, Département « Science de la Vie et Santé », Unité de Formation-Recherche en Physiologie végétale, F-75231 Paris, France.
| | - Thierry Balliau
- Plateforme d'Analyse Protéomique de Paris Sud Ouest (PAPPSO), GQE-Le Moulon, INRA, Université Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, F-91190 Gif-sur-Yvette, France.
| | - Michel Zivy
- Plateforme d'Analyse Protéomique de Paris Sud Ouest (PAPPSO), GQE-Le Moulon, INRA, Université Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, F-91190 Gif-sur-Yvette, France.
| | - Bruno Fogliani
- Institut des Sciences Exactes et Appliquées (EA 7484), Université de Nouvelle-Calédonie, BP R4, 98851 Nouméa, Nouvelle-Calédonie.
- Institut Agronomique Néo-Calédonien (IAC), Équipe ARBOREAL, Agriculture Biodiversité et Valorisation, BP 73 Port Laguerre, 98890 Païta, Nouvelle-Calédonie.
| | - Valérie Sarramegna-Burtet
- Institut des Sciences Exactes et Appliquées (EA 7484), Université de Nouvelle-Calédonie, BP R4, 98851 Nouméa, Nouvelle-Calédonie.
| | - Dominique Job
- Centre National de la Recherche Scientifique (CNRS), CNRS-Université Claude Bernard Lyon-Institut National des Sciences Appliquées-Bayer CropScience (UMR5240), Bayer CropScience, F-69263 Lyon CEDEX 9, France.
- AgroParisTech, Département « Science de la Vie et Santé », Unité de Formation-Recherche en Physiologie végétale, F-75231 Paris, France.
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Anger N, Fogliani B, Scutt CP, Gâteblé G. Dioecy in Amborella trichopoda: evidence for genetically based sex determination and its consequences for inferences of the breeding system in early angiosperms. ANNALS OF BOTANY 2017; 119:591-597. [PMID: 28110266 PMCID: PMC5604545 DOI: 10.1093/aob/mcw278] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2016] [Accepted: 12/09/2016] [Indexed: 05/28/2023]
Abstract
BACKGROUND AND AIMS This work aimed to gain insight into the breeding system at the base of living angiosperms through both character state reconstructions and the study of sex ratios and phenotypes in the likely sister to all other living angiosperms, Amborella trichopoda . METHODS Sex phenotypes were mapped onto a phylogeny of basally diverging angiosperms using maximum parsimony. In parallel, sex ratios and phenotypes were studied over two consecutive flowering seasons in an ex situ population of A. trichopoda , while the sex ratio of an in situ population was also assessed. KEY RESULTS Parsimony analyses failed to resolve the breeding system present at the base of living angiosperms, but indicated the importance of A. trichopoda for the future elucidation of this question. The ex situ A. trichopoda population studied showed a primary sex ratio close to 1:1, though sex ratio bias was found in the in situ population studied. Instances of sexual instability were quantified in both populations. CONCLUSIONS Sex ratio data support the presence of genetic sex determination in A. trichopoda , whose further elucidation may guide inferences on the breeding system at the base of living angiosperms. Sexual instability in A. trichopoda suggests the operation of epigenetic mechanisms, and the evolution of dioecy via a gynodioecious intermediate.
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Affiliation(s)
- Nicolas Anger
- Institut Agronomique néo-Calédonien (IAC), BP 73 Port Laguerre, 98890 Païta, New Caledonia
| | - Bruno Fogliani
- Institut Agronomique néo-Calédonien (IAC), BP 73 Port Laguerre, 98890 Païta, New Caledonia
- Université de la Nouvelle-Calédonie (UNC), Laboratoire Insulaire du Vivant et de l'Environnement (LIVE), 98851 Nouméa, New Caledonia
| | - Charles P. Scutt
- Laboratoire de Reproduction et Développement des Plantes (UMR 5667: CNRS-INRA-Université de Lyon), Ecole Normale Supérieure de Lyon (ENS-Lyon), 46 allée d’Italie, 69364 Lyon Cedex 07, France
| | - Gildas Gâteblé
- Institut Agronomique néo-Calédonien (IAC), BP 73 Port Laguerre, 98890 Païta, New Caledonia
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