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Durand-Bessart C, Akomo-Okoue EF, Ebang Ella GW, Porcher V, Bitome Essono PY, Bretagnolle F, Fontaine C. Local people enhance our understanding of Afrotropical frugivory networks. Curr Biol 2024; 34:1541-1548.e3. [PMID: 38452760 DOI: 10.1016/j.cub.2024.02.026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2023] [Revised: 11/20/2023] [Accepted: 02/13/2024] [Indexed: 03/09/2024]
Abstract
Afrotropical forests are undergoing massive change caused by defaunation, i.e., the human-induced decline of animal species,1 most of which are frugivorous species.1,2,3 Frugivores' depletion and their functional disappearance are expected to cascade on tree dispersal and forest structure via interaction networks,4,5,6,7 as the majority of tree species depend on frugivores for their dispersal.8 However, frugivory networks remain largely unknown, especially in Afrotropical areas,9,10,11 which considerably limits our ability to predict changes in forest dynamics and structures using network analysis.12,13,14,15 While the academic workforce may be inadequate to fill this knowledge gap before it is too late, local ecological knowledge appears as a valuable source of ecological information and could significantly contribute to our understanding of such crucial interactions for tropical forests.16,17,18,19,20,21 To investigate potential synergies between local ecological knowledge and academic knowledge,20,21 we compiled frugivory interactions linking 286 trees to 100 frugivore species from the academic literature and local ecological knowledge coming from interviews of Gabonese forest-dependent people. Here, we showed that local ecological knowledge on frugivory interactions was substantial and original, with 39% of these interactions unknown by science. We demonstrated that combining academic and local ecological knowledge affects the functional relationship linking frugivore body mass to seed size, as well as the network structure. Our results highlight the benefits of bridging knowledge systems between academics and local communities for a better understanding of the functioning and response to perturbations of Afrotropical forests.
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Affiliation(s)
- Clémentine Durand-Bessart
- Biogeosciences, UMR 6282, Université Bourgogne Franche Comte-CNRS, 21000 Dijon, France; Centre d'Ecologie et des Sciences de la Conservation, CESCO, UMR 7204, MNHN-CNRS-SU, 75005 Paris, France; SENS, IRD, CIRAD, 34000 Montpellier, France.
| | | | | | - Vincent Porcher
- Institut de Ciència i Tecnologia Ambientals (ICTA), Universitat Autònoma de Barcelona, 08193 Cerdanyola del Vallès, Barcelona, Spain; SENS, IRD, CIRAD, 34000 Montpellier, France
| | | | - François Bretagnolle
- Biogeosciences, UMR 6282, Université Bourgogne Franche Comte-CNRS, 21000 Dijon, France
| | - Colin Fontaine
- Centre d'Ecologie et des Sciences de la Conservation, CESCO, UMR 7204, MNHN-CNRS-SU, 75005 Paris, France
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2
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Shi Y, Hu G, Wang Y, Liang Q, Su D, Lu W, Deng W, Bouzayen M, Liu Y, Li Z, Huang B. The SlGRAS9-SlZHD17 transcriptional cascade regulates chlorophyll and carbohydrate metabolism contributing to fruit quality traits in tomato. New Phytol 2024; 241:2540-2557. [PMID: 38263687 DOI: 10.1111/nph.19530] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2023] [Accepted: 12/12/2023] [Indexed: 01/25/2024]
Abstract
Some essential components of fleshy fruits are dependent on photosynthetic activity and carbohydrate metabolism. Nevertheless, the regulatory mechanisms linking chlorophyll and carbohydrate metabolism remain partially understood. Here, we uncovered the role of SlGRAS9 and SlZHD17 transcription factors in controlling chlorophyll and carbohydrate accumulation in tomato fruit. Knockout or knockdown of SlGRAS9 or SlZHD17 resulted in marked increase in chlorophyll content, reprogrammed chloroplast biogenesis and enhanced accumulation of starch and soluble sugars. Combined genome-wide transcriptomic profiling and promoter-binding experiments unveiled a complex mechanism in which the SlGRAS9/SlZHD17 regulatory module modulates the expression of chloroplast and sugar metabolism either via a sequential transcriptional cascade or through binding of both TFs to the same gene promoters, or, alternatively, via parallel pathways where each of the TFs act on different target genes. For instance, the regulation of SlAGPaseS1 and SlSUS1 is mediated by SlZHD17 whereas that of SlVI and SlGLK1 occurs only through SlGRAS9 without the intervention of SlZHD17. Both SlGRAS9 and SlZHD17 can also directly bind the promoter of SlPOR-B to regulate its expression. Taken together, our findings uncover two important regulators acting synergistically to manipulate chlorophyll and carbohydrate accumulation and provide new potential breeding targets for improving fruit quality in fleshy fruits.
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Affiliation(s)
- Yuan Shi
- Key Laboratory of Plant Hormones and Molecular Breeding of Chongqing, School of Life Sciences, Chongqing University, Chongqing, 401331, China
- Center of Plant Functional Genomics, Institute of Advanced Interdisciplinary Studies, Chongqing University, Chongqing, 401331, China
| | - Guojian Hu
- Key Laboratory of Plant Hormones and Molecular Breeding of Chongqing, School of Life Sciences, Chongqing University, Chongqing, 401331, China
- Center of Plant Functional Genomics, Institute of Advanced Interdisciplinary Studies, Chongqing University, Chongqing, 401331, China
- Laboratoire de Recherche en Sciences Vegetales - Genomique et Biotechnologie des Fruits - UMR5546, Universite de Toulouse, CNRS, UPS, Toulouse-INP, Toulouse, 31326, France
| | - Yan Wang
- Key Laboratory of Plant Hormones and Molecular Breeding of Chongqing, School of Life Sciences, Chongqing University, Chongqing, 401331, China
- Center of Plant Functional Genomics, Institute of Advanced Interdisciplinary Studies, Chongqing University, Chongqing, 401331, China
| | - Qin Liang
- Key Laboratory of Plant Hormones and Molecular Breeding of Chongqing, School of Life Sciences, Chongqing University, Chongqing, 401331, China
- Center of Plant Functional Genomics, Institute of Advanced Interdisciplinary Studies, Chongqing University, Chongqing, 401331, China
| | - Deding Su
- Key Laboratory of Plant Hormones and Molecular Breeding of Chongqing, School of Life Sciences, Chongqing University, Chongqing, 401331, China
- Center of Plant Functional Genomics, Institute of Advanced Interdisciplinary Studies, Chongqing University, Chongqing, 401331, China
| | - Wang Lu
- Key Laboratory of Plant Hormones and Molecular Breeding of Chongqing, School of Life Sciences, Chongqing University, Chongqing, 401331, China
- Center of Plant Functional Genomics, Institute of Advanced Interdisciplinary Studies, Chongqing University, Chongqing, 401331, China
| | - Wei Deng
- Key Laboratory of Plant Hormones and Molecular Breeding of Chongqing, School of Life Sciences, Chongqing University, Chongqing, 401331, China
- Center of Plant Functional Genomics, Institute of Advanced Interdisciplinary Studies, Chongqing University, Chongqing, 401331, China
| | - Mondher Bouzayen
- Center of Plant Functional Genomics, Institute of Advanced Interdisciplinary Studies, Chongqing University, Chongqing, 401331, China
- Laboratoire de Recherche en Sciences Vegetales - Genomique et Biotechnologie des Fruits - UMR5546, Universite de Toulouse, CNRS, UPS, Toulouse-INP, Toulouse, 31326, France
| | - Yudong Liu
- School of Agricultural Sciences, Zhengzhou University, Zhengzhou, 450001, China
| | - Zhengguo Li
- Key Laboratory of Plant Hormones and Molecular Breeding of Chongqing, School of Life Sciences, Chongqing University, Chongqing, 401331, China
- Center of Plant Functional Genomics, Institute of Advanced Interdisciplinary Studies, Chongqing University, Chongqing, 401331, China
| | - Baowen Huang
- Key Laboratory of Plant Hormones and Molecular Breeding of Chongqing, School of Life Sciences, Chongqing University, Chongqing, 401331, China
- Center of Plant Functional Genomics, Institute of Advanced Interdisciplinary Studies, Chongqing University, Chongqing, 401331, China
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3
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Osorio S, Costa F, Gibon Y, Usadel B, Vicente A. Advances in fruit development and ripening. J Exp Bot 2023; 74:6205-6206. [PMID: 37930353 DOI: 10.1093/jxb/erad379] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/07/2023]
Affiliation(s)
- Sonia Osorio
- Department of Molecular Biology and Biochemistry, Institute of Mediterranean and Subtropical Horticulture 'La Mayora', Universidad de Malaga- Universidad de Málaga-Consejo Superior de Investigaciones Científicas (IHSM-UMA-CSIC), Malaga University, Málaga, Spain
| | - Fabrizio Costa
- Center Agriculture Food Environment (C3A), University of Trento, Via Mach 1, 39098 San Michele all'Adige (Trento), Italy
| | - Yves Gibon
- INRAE-Bordeaux, Villenave d'Ornon, Nouvelle Aquitaine, France
| | - Björn Usadel
- Institute of Biological Data Science, CEPLAS, Heinrich Heine University Düsseldorf/(IBG-4), Forschungszentrum Jülich, Germany
| | - Ariel Vicente
- College of Agriculture, National University of La Plata - CONICET Argentina, La Plata, Argentina
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4
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Zhu W, Li H, Dong P, Ni X, Fan M, Yang Y, Xu S, Xu Y, Qian Y, Chen Z, Lü P. Low temperature-induced regulatory network rewiring via WRKY regulators during banana peel browning. Plant Physiol 2023; 193:855-873. [PMID: 37279567 PMCID: PMC10469544 DOI: 10.1093/plphys/kiad322] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/13/2023] [Revised: 05/10/2023] [Accepted: 05/11/2023] [Indexed: 06/08/2023]
Abstract
Banana (Musa spp.) fruits, as typical tropical fruits, are cold sensitive, and lower temperatures can disrupt cellular compartmentalization and lead to severe browning. How tropical fruits respond to low temperature compared to the cold response mechanisms of model plants remains unknown. Here, we systematically characterized the changes in chromatin accessibility, histone modifications, distal cis-regulatory elements, transcription factor binding, and gene expression levels in banana peels in response to low temperature. Dynamic patterns of cold-induced transcripts were generally accompanied by concordant chromatin accessibility and histone modification changes. These upregulated genes were enriched for WRKY binding sites in their promoters and/or active enhancers. Compared to banana peel at room temperature, large amounts of banana WRKYs were specifically induced by cold and mediated enhancer-promoter interactions regulating critical browning pathways, including phospholipid degradation, oxidation, and cold tolerance. This hypothesis was supported by DNA affinity purification sequencing, luciferase reporter assays, and transient expression assay. Together, our findings highlight widespread transcriptional reprogramming via WRKYs during banana peel browning at low temperature and provide an extensive resource for studying gene regulation in tropical plants in response to cold stress, as well as potential targets for improving cold tolerance and shelf life of tropical fruits.
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Affiliation(s)
- Wenjun Zhu
- Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Hua Li
- Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Pengfei Dong
- Center for Disease Neurogenomics, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA
| | - Xueting Ni
- Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Minlei Fan
- Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Yingjie Yang
- Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Shiyao Xu
- Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Yanbing Xu
- Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Yangwen Qian
- WIMI Biotechnology Co., Ltd., Changzhou 213000, China
| | - Zhuo Chen
- Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Peitao Lü
- Fujian Agriculture and Forestry University, Fuzhou 350002, China
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5
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Wu Y, Popovsky-Sarid S, Tikunov Y, Borovsky Y, Baruch K, Visser RGF, Paran I, Bovy A. CaMYB12-like underlies a major QTL for flavonoid content in pepper (Capsicum annuum) fruit. New Phytol 2023; 237:2255-2267. [PMID: 36545937 DOI: 10.1111/nph.18693] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2022] [Accepted: 12/11/2022] [Indexed: 06/17/2023]
Abstract
The regulation of flavonoid biosynthesis is only partially explored in pepper (Capsicum annuum L.). The genetic basis underlying flavonoid variation in pepper fruit was studied. Variation of flavonoids in fruit of a segregating F2 population was studied using LC-MS followed by quantitative trait locus (QTL) analysis. Near-isogenic lines (NILs), BC1 S1 populations, virus-induced gene silenced (VIGS) and transgenic overexpression were used to confirm the QTL and the underlying candidate gene. A major QTL for flavonoid content was found in chromosome 5, and a CaMYB12-like transcription factor gene was identified as candidate gene. Near-isogenic lines (NILs) contrasting for CaMYB12-like confirmed its association with the flavonoid content variation. Virus-induced gene silencing (VIGS) of CaMYB12-like led to a significant decrease in the expression of several flavonoid pathway genes and a drastic decrease in flavonoid levels in silenced fruits. Expression of CaMYB12-like in the tomato slmyb12 mutant led to enhanced levels of several flavonoids in the fruit skin. Introgression of the CaMYB12-like allele into two cultivated varieties also increased flavonoid content in their fruits. A combination of metabolomic, genetic and gene functional analyses led to discovery of CaMYB12-like as a major regulator of flavonoid variation in pepper fruit and demonstrated its potential to breed for high-flavonoid content in cultivated pepper.
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Affiliation(s)
- Yi Wu
- Plant Breeding, Wageningen University and Research, 6708PB, Wageningen, the Netherlands
- Graduate School Experimental Plant Sciences, Wageningen University and Research, 6708PB, Wageningen, the Netherlands
| | - Sigal Popovsky-Sarid
- Institute of Plant Science, Agricultural Research Organization, The Volcani Center, 7534509, Rishon Lezion, Israel
| | - Yury Tikunov
- Plant Breeding, Wageningen University and Research, 6708PB, Wageningen, the Netherlands
| | - Yelena Borovsky
- Institute of Plant Science, Agricultural Research Organization, The Volcani Center, 7534509, Rishon Lezion, Israel
| | | | - Richard G F Visser
- Plant Breeding, Wageningen University and Research, 6708PB, Wageningen, the Netherlands
| | - Ilan Paran
- Institute of Plant Science, Agricultural Research Organization, The Volcani Center, 7534509, Rishon Lezion, Israel
| | - Arnaud Bovy
- Plant Breeding, Wageningen University and Research, 6708PB, Wageningen, the Netherlands
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6
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Freschi L, Corpas FJ, Palma JM. Fruit Physiology through Signaling Processes: Latest Advances and Future Challenges. Int J Mol Sci 2023; 24:ijms24020976. [PMID: 36674492 PMCID: PMC9861208 DOI: 10.3390/ijms24020976] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2022] [Accepted: 12/20/2022] [Indexed: 01/06/2023] Open
Abstract
Fruits are unique to flowering plants and confer a selective advantage to these species by facilitating seed maturation and dispersal [...].
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Affiliation(s)
- Luciano Freschi
- Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, Sao Paulo 05508-090, Brazil
- Correspondence:
| | - Francisco J. Corpas
- Group of Antioxidants, Free Radicals and Nitric Oxide in Biotechnology, Food and Agriculture, Estación Experimental del Zaidín, Spanish National Research Council (CSIC), C/Profesor Albareda 1, 18008 Granada, Spain
| | - José M. Palma
- Group of Antioxidants, Free Radicals and Nitric Oxide in Biotechnology, Food and Agriculture, Estación Experimental del Zaidín, Spanish National Research Council (CSIC), C/Profesor Albareda 1, 18008 Granada, Spain
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7
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Zhang Y, Chang BM, Burdet B, Dai Z, Delrot S, Keller M. Apoplastic sugar may be lost from grape berries and retrieved in pedicels. Plant Physiol 2022; 190:592-604. [PMID: 35642904 PMCID: PMC9434297 DOI: 10.1093/plphys/kiac262] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/07/2022] [Accepted: 05/07/2022] [Indexed: 06/15/2023]
Abstract
In ripening grape (Vitis sp.) berries, the combination of rapid sugar import, apoplastic phloem unloading, and water discharge via the xylem creates a potential risk for apoplastic sugar to be lost from the berries. We investigated the likelihood of such sugar loss and a possible sugar retrieval mechanism in the pedicels of different Vitis genotypes. Infusion of D-glucose-1-13C or L-glucose-1-13C to the stylar end of attached berries demonstrated that both sugars can be leached from the berries, but only the nontransport sugar L-glucose moved beyond the pedicels. No 13C enrichment was found in peduncles and leaves. Genes encoding 10 sugar transporters were expressed in the pedicels throughout grape ripening. Using an immunofluorescence technique, we localized the sucrose transporter SUC27 to pedicel xylem parenchyma cells. These results indicate that pedicels possess the molecular machinery for sugar retrieval from the apoplast. Plasmodesmata were observed between vascular parenchyma cells in pedicels, and movement of the symplastically mobile dye carboxyfluorescein demonstrated that the symplastic connection is physiologically functional. Taken together, the chemical, molecular, and anatomical evidence gathered here supports the idea that some apoplastic sugar can be leached from grape berries and is effectively retrieved in a two-step process in the pedicels. First, sugar transporters may actively retrieve leached sugar from the xylem. Second, retrieved sugar may move symplastically to the pedicel parenchyma for local use or storage, or to the phloem for recycling back to the berry.
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Affiliation(s)
- Yun Zhang
- Department of Horticulture, Irrigated Agriculture Research and Extension Center, Washington State University, Prosser, WA, USA
- Ste. Michelle Wine Estates, Prosser, WA, USA
| | | | | | - Zhanwu Dai
- INRAE, University of Bordeaux, ISVV, Villenave d’Ornon, France
- Institute of Botany, Chinese Academy of Sciences, Beijing, China
| | - Serge Delrot
- INRAE, University of Bordeaux, ISVV, Villenave d’Ornon, France
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8
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Pascual I, Antolín MC, Goicoechea N, Irigoyen JJ, Morales F. Grape berry transpiration influences ripening and must composition in cv. Tempranillo (Vitis vinifera L.). Physiol Plant 2022; 174:e13741. [PMID: 35765704 PMCID: PMC9543093 DOI: 10.1111/ppl.13741] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/13/2022] [Revised: 06/14/2022] [Accepted: 06/23/2022] [Indexed: 06/15/2023]
Abstract
The implications of grape berry transpiration for the ripening process and final grape composition were studied. An experiment was conducted, under controlled conditions, with fruit-bearing cuttings of Vitis vinifera L. cv. Tempranillo. Three doses of the antitranspirant di-1-p-menthene were applied directly to the bunch at the onset of veraison: 1%, 5%, and 10% (v/v) (D1, D5, and D10, respectively). A treatment with bunches sprayed with water (D0) was also included as a control. Grape and bunch transpiration, and total soluble solids (TSS) accumulation rate decreased as the dose of antitranspirant increased, thus resulting in the lengthening of the ripening period. Bunch transpiration rates were linearly correlated with the elapsed time between veraison and maturity, and with the TSS accumulation rate. The evolution of pH, malic acid and total skin anthocyanins during ripening did not show remarkable changes as a consequence of the artificially reduced bunch transpiration. However, a decoupling between TSS and anthocyanins was observed. At maturity, the bunches treated with D10 had significantly lower must acidity and higher pH and extractable anthocyanin levels, these differences being likely associated with the lengthening of the ripening period. The results show a clear implication of grape transpiration for the ripening process and final grape composition, and give new hints on the direct application of antitranspirants to the bunch as a way to regulate sugar accumulation while avoiding the concurrent delay of color development.
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Affiliation(s)
- Inmaculada Pascual
- Plant Stress Physiology Group (Associated Unit to CSIC, EEAD, Zaragoza)Universidad de Navarra‐BIOMAPamplonaNavarraSpain
| | - María Carmen Antolín
- Plant Stress Physiology Group (Associated Unit to CSIC, EEAD, Zaragoza)Universidad de Navarra‐BIOMAPamplonaNavarraSpain
| | - Nieves Goicoechea
- Plant Stress Physiology Group (Associated Unit to CSIC, EEAD, Zaragoza)Universidad de Navarra‐BIOMAPamplonaNavarraSpain
| | - Juan José Irigoyen
- Plant Stress Physiology Group (Associated Unit to CSIC, EEAD, Zaragoza)Universidad de Navarra‐BIOMAPamplonaNavarraSpain
| | - Fermín Morales
- Instituto de Agrobiotecnología (IdAB)CSIC‐Gobierno de NavarraMutilvaNavarraSpain
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9
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Tayal R, Kumar V, Irfan M. Harnessing the power of hydrogen sulphide (H 2 S) for improving fruit quality traits. Plant Biol (Stuttg) 2022; 24:594-601. [PMID: 34866296 DOI: 10.1111/plb.13372] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2021] [Accepted: 11/11/2021] [Indexed: 06/13/2023]
Abstract
Hydrogen sulphide (H2 S) is a gaseous molecule and originates endogenously in plants. It is considered a potential signalling agent in various physiological processes of plants. Numerous reports have examined the role of H2 S in fruit ripening and in enhancing fruit quality traits. H2 S coordinates the fruit antioxidant system, fruit ripening phytohormones, such as ethylene and abscisic acid, together with other ripening-related signalling molecules, including nitric oxide and hydrogen peroxide. Although many studies have increased understanding of various aspects of this complex network, there is a gap in understanding crosstalk of H2 S with key players of fruit ripening, postharvest senescence and fruit metabolism. This review focused on deciphering fruit H2 S metabolism, signalling and its interaction with other ripening-related signalling molecules during fruit ripening and postharvest storage. Moreover, we also discuss how H2 S can be used as a tool for improving fruit quality and productivity and reducing postharvest loss of perishable fruits.
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Affiliation(s)
- R Tayal
- National Institute of Plant Genome Research, New Delhi, India
| | - V Kumar
- Department of Physiology and Cell Biology, Department of Internal Medicine, The Ohio State University Wexner Medical Center, Columbus, OH, USA
| | - M Irfan
- Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY, USA
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10
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Zhou Y, Mumtaz MA, Zhang Y, Yang Z, Hao Y, Shu H, Zhu J, Bao W, Cheng S, Zhu G, Wang Z. Response of anthocyanin biosynthesis to light by strand-specific transcriptome and miRNA analysis in Capsicum annuum. BMC Plant Biol 2022; 22:79. [PMID: 35193520 PMCID: PMC8862587 DOI: 10.1186/s12870-021-03423-6] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2021] [Accepted: 12/30/2021] [Indexed: 05/26/2023]
Abstract
BACKGROUND Anthocyanins have distinct biological functions in plant coloring, plant defense against strong light, UV irradiation, and pathogen infection. Aromatic hydroxyl groups and ortho-dihydroxyl groups in anthocyanins are able to inhibit free-radical chain reactions and hydroxyl radicals. Thus, anthocyanins play an antioxidative role by removing various types of ROS. Pepper is one of the solanaceous vegetables with the largest cultivation area in China. The purple-fruited pepper is rich in anthocyanins, which not only increases the ornamental nature of the pepper fruit but also benefits the human body. In this experiment, light-induced regulatory pathways and related specific regulators of anthocyanin biosynthesis were examined through integrative transcriptomic and metabolomic analysis. RESULTS Results revealed that delphinium 3-O-glucoside significantly accumulated in light exposed surface of pepper fruit after 48 h as compared to shaded surface. Furthermore, through strand-specific sequencing technology, 1341 differentially expressed genes, 172 differentially expressed lncRNAs, 8 differentially expressed circRNAs, and 28 differentially expressed miRNAs were identified significantly different among both surfaces. The flavonoid synthesis pathway was significantly enriched by KEGG analysis including SHT (XM_016684802.1), AT-like (XM_016704776.1), CCoAOMT (XM_016698340.1, XM_016698341.1), CHI (XM_016697794.1, XM_016697793.1), CHS2 (XM_016718139.1), CHS1B (XM_016710598.1), CYP98A2-like (XM_016688489.1), DFR (XM_016705224.1), F3'5'H (XM_016693437.1), F3H (XM_016705025.1), F3'M (XM_016707872.1), LDOX (XM_016712446.1), TCM (XM_016722116.1) and TCM-like (XM_016722117.1). Most of these significantly enriched flavonoid synthesis pathway genes may be also regulated by lncRNA. Some differentially expressed genes encoding transcription factors were also identified including MYB4-like (XM_016725242.1), MYB113-like (XM_016689220.1), MYB308-like (XM_016696983.1, XM_016702244.1), and EGL1 (XM_016711673.1). Three 'lncRNA-miRNA-mRNA' regulatory networks with sly-miR5303, stu-miR5303g, stu-miR7997a, and stu-miR7997c were constructed, including 28 differentially expressed mRNAs and 6 differentially expressed lncRNAs. CONCLUSION Possible light regulated anthocyanin biosynthesis and transport genes were identified by transcriptome analysis, and confirmed by qRT-PCR. These results provide important data for further understanding of the anthocyanin metabolism in response to light in pepper.
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Affiliation(s)
- Yan Zhou
- Key Laboratory for Quality Regulation of Tropical Horticultural Crops of Hainan Province/Engineering Research Center of the Ministry of Education for New Variety Breeding of Tropical Crop, School of Horticulture, Hainan University, Haikou, 570228, China
| | - Muhammad Ali Mumtaz
- Key Laboratory for Quality Regulation of Tropical Horticultural Crops of Hainan Province/Engineering Research Center of the Ministry of Education for New Variety Breeding of Tropical Crop, School of Horticulture, Hainan University, Haikou, 570228, China
| | - Yonghao Zhang
- Institute of Tropical Horticulture Research in Hainan Academy of Agricultural Sciences, Haikou, 571100, China
| | - Zhuang Yang
- Key Laboratory for Quality Regulation of Tropical Horticultural Crops of Hainan Province/Engineering Research Center of the Ministry of Education for New Variety Breeding of Tropical Crop, School of Horticulture, Hainan University, Haikou, 570228, China
| | - Yuanyuan Hao
- Key Laboratory for Quality Regulation of Tropical Horticultural Crops of Hainan Province/Engineering Research Center of the Ministry of Education for New Variety Breeding of Tropical Crop, School of Horticulture, Hainan University, Haikou, 570228, China
| | - Huangying Shu
- Key Laboratory for Quality Regulation of Tropical Horticultural Crops of Hainan Province/Engineering Research Center of the Ministry of Education for New Variety Breeding of Tropical Crop, School of Horticulture, Hainan University, Haikou, 570228, China
| | - Jie Zhu
- Key Laboratory for Quality Regulation of Tropical Horticultural Crops of Hainan Province/Engineering Research Center of the Ministry of Education for New Variety Breeding of Tropical Crop, School of Horticulture, Hainan University, Haikou, 570228, China
| | - Wenlong Bao
- Key Laboratory for Quality Regulation of Tropical Horticultural Crops of Hainan Province/Engineering Research Center of the Ministry of Education for New Variety Breeding of Tropical Crop, School of Horticulture, Hainan University, Haikou, 570228, China
| | - Shanhan Cheng
- Key Laboratory for Quality Regulation of Tropical Horticultural Crops of Hainan Province/Engineering Research Center of the Ministry of Education for New Variety Breeding of Tropical Crop, School of Horticulture, Hainan University, Haikou, 570228, China
| | - Guopeng Zhu
- Key Laboratory for Quality Regulation of Tropical Horticultural Crops of Hainan Province/Engineering Research Center of the Ministry of Education for New Variety Breeding of Tropical Crop, School of Horticulture, Hainan University, Haikou, 570228, China
| | - Zhiwei Wang
- Key Laboratory for Quality Regulation of Tropical Horticultural Crops of Hainan Province/Engineering Research Center of the Ministry of Education for New Variety Breeding of Tropical Crop, School of Horticulture, Hainan University, Haikou, 570228, China.
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11
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Wu L, Wang H, Liu S, Liu M, Liu J, Wang Y, Sun L, Yang W, Shen H. Mapping of CaPP2C35 involved in the formation of light-green immature pepper (Capsicum annuum L.) fruits via GWAS and BSA. Theor Appl Genet 2022; 135:591-604. [PMID: 34762177 DOI: 10.1007/s00122-021-03987-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2021] [Accepted: 10/26/2021] [Indexed: 06/13/2023]
Abstract
Genome-wide association study, bulked segregant analysis, and genetic analysis delimited the LG locus controlling light-green immature pepper fruits into a 35.07 kbp region on chromosome 10. A strong candidate gene, CaPP2C35, was identified in this region. In pepper (Capsicum annuum L.), the common colors of immature fruits are yellowish white, milky yellow, green, purple, and purplish black. Genes related to dark green, white, and purple immature fruits have been cloned; however, only a few studies have investigated light-green immature fruits. Here, we performed a genetic study using light-green (17C827) and green (17C658) immature fruits. The light-green color of immature fruits was controlled by a single locus-dominant genetic trait compared with the green color of immature fruits. We also performed a genome-wide association study and bulked segregant analysis of immature-fruit color and mapped the LG locus to a 35.07 kbp region on chromosome 10. Only one gene, Capana10g001710, was found in this region. A G-A substitution occurred at the 313th base of the Capana10g001710 coding sequence in 17C827, resulting in the conversion of the α-helix of its encoded PP2C35 protein into a β-fold. The expression of Capana10g001710 (termed CaPP2C35) in 17C827 was significantly higher than in 17C658. Silencing CaPP2C35 in 17C827 resulted in an increase in chlorophyll content in the exocarp and the appearance of green stripes on the surface of the fruit. These results indicate that CaPP2C35 may be involved in the formation of light-green immature fruits by regulating the accumulation of chlorophyll content in the exocarp. Thus, these findings lay the foundation for further studies and genetic improvement of immature-fruit color in pepper.
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Affiliation(s)
- Lang Wu
- Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, Department of Vegetable Science, College of Horticulture, China Agricultural University, Beijing, 100193, China
| | - Haoran Wang
- Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, Department of Vegetable Science, College of Horticulture, China Agricultural University, Beijing, 100193, China
| | - Sujun Liu
- Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, Department of Vegetable Science, College of Horticulture, China Agricultural University, Beijing, 100193, China
| | - Mengmeng Liu
- Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, Department of Vegetable Science, College of Horticulture, China Agricultural University, Beijing, 100193, China
| | - Jinkui Liu
- Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, Department of Vegetable Science, College of Horticulture, China Agricultural University, Beijing, 100193, China
| | - Yihao Wang
- Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, Department of Vegetable Science, College of Horticulture, China Agricultural University, Beijing, 100193, China
| | - Liang Sun
- Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, Department of Vegetable Science, College of Horticulture, China Agricultural University, Beijing, 100193, China
| | - Wencai Yang
- Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, Department of Vegetable Science, College of Horticulture, China Agricultural University, Beijing, 100193, China
| | - Huolin Shen
- Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, Department of Vegetable Science, College of Horticulture, China Agricultural University, Beijing, 100193, China.
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12
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Ding X, Liu X, Jiang G, Li Z, Song Y, Zhang D, Jiang Y, Duan X. SlJMJ7 orchestrates tomato fruit ripening via crosstalk between H3K4me3 and DML2-mediated DNA demethylation. New Phytol 2022; 233:1202-1219. [PMID: 34729792 DOI: 10.1111/nph.17838] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2021] [Accepted: 10/28/2021] [Indexed: 06/13/2023]
Abstract
The ripening of fleshy fruits is a unique developmental process that Arabidopsis and rice lack. This process is driven by hormones and transcription factors. However, the critical and early regulators of fruit ripening are still poorly understood. Here, we revealed that SlJMJ7, an H3K4 demethylase, is a critical negative regulator of fruit ripening in tomato. Combined genome-wide transcription, binding sites, histone H3K4me3 and DNA methylation analyses demonstrated that SlJMJ7 regulates a key group of ripening-related genes, including ethylene biosynthesis (ACS2, ACS4 and ACO6), transcriptional regulation (RIN and NOR) and DNA demethylation (DML2) genes, by H3K4me3 demethylation. Moreover, loss of SlJMJ7 function leads to increased H3K4me3 levels, which directly activates ripening-related genes, and to global DML2-mediated DNA hypomethylation in fruit, which indirectly prompts expression of ripening-related genes. Together, these effects lead to accelerated fruit ripening in sljmj7 mutant. Our findings demonstrate that SlJMJ7 acts as a master negative regulator of fruit ripening not only through direct removal of H3K4me3 from multiple key ripening-related factors, but also through crosstalk between histone and DNA demethylation. These findings reveal a novel crosstalk between histone methylation and DNA methylation to regulate gene expression in plant developmental processes.
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Affiliation(s)
- Xiaochun Ding
- Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
| | - Xuncheng Liu
- Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
- Center of Economic Botany, Core Botanical Gardens, Chinese Academy of Sciences, Guangzhou, 510650, China
| | - Guoxiang Jiang
- Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
| | - Zhiwei Li
- Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Yunbo Song
- Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
| | - Dandan Zhang
- Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
| | - Yueming Jiang
- Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
- Center of Economic Botany, Core Botanical Gardens, Chinese Academy of Sciences, Guangzhou, 510650, China
- College of Advanced Agricultural Sciences, University of Chinese Academy of Sciences, Beijing, 10049, China
| | - Xuewu Duan
- Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
- Center of Economic Botany, Core Botanical Gardens, Chinese Academy of Sciences, Guangzhou, 510650, China
- College of Advanced Agricultural Sciences, University of Chinese Academy of Sciences, Beijing, 10049, China
- Agro-food Science and Technology Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, 530007, China
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13
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He Y, Chen R, Yang Y, Liang G, Zhang H, Deng X, Xi R. Sugar Metabolism and Transcriptome Analysis Reveal Key Sugar Transporters during Camellia oleifera Fruit Development. Int J Mol Sci 2022; 23:ijms23020822. [PMID: 35055010 PMCID: PMC8775869 DOI: 10.3390/ijms23020822] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2021] [Revised: 01/08/2022] [Accepted: 01/10/2022] [Indexed: 12/11/2022] Open
Abstract
Camellia oleifera is a widely planted woody oil crop with economic significance because it does not occupy cultivated land. The sugar-derived acetyl-CoA is the basic building block in fatty acid synthesis and oil synthesis in C. oleifera fruit; however, sugar metabolism in this species is uncharacterized. Herein, the changes in sugar content and metabolic enzyme activity and the transcriptomic changes during C. oleifera fruit development were determined in four developmental stages (CR6: young fruit formation; CR7: expansion; CR9: oil transformation; CR10: ripening). CR7 was the key period of sugar metabolism since it had the highest amount of soluble sugar, sucrose, and glucose with a high expression of genes related to sugar transport (four sucrose transporters (SUTs) or and one SWEET-like gene, also known as a sugar, will eventually be exported transporters) and metabolism. The significant positive correlation between their expression and sucrose content suggests that they may be the key genes responsible for sucrose transport and content maintenance. Significantly differentially expressed genes enriched in the starch and sucrose metabolism pathway were observed in the CR6 versus CR10 stages according to KEGG annotation. The 26 enriched candidate genes related to sucrose metabolism provide a molecular basis for further sugar metabolism studies in C. oleifera fruit.
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Affiliation(s)
- Yu He
- Department of Forestry, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou 510642, China; (Y.H.); (R.C.); (Y.Y.); (G.L.); (H.Z.)
- Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, Guangzhou 510642, China
| | - Ruifan Chen
- Department of Forestry, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou 510642, China; (Y.H.); (R.C.); (Y.Y.); (G.L.); (H.Z.)
- Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, Guangzhou 510642, China
| | - Ying Yang
- Department of Forestry, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou 510642, China; (Y.H.); (R.C.); (Y.Y.); (G.L.); (H.Z.)
- Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, Guangzhou 510642, China
| | - Guichan Liang
- Department of Forestry, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou 510642, China; (Y.H.); (R.C.); (Y.Y.); (G.L.); (H.Z.)
- Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, Guangzhou 510642, China
| | - Heng Zhang
- Department of Forestry, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou 510642, China; (Y.H.); (R.C.); (Y.Y.); (G.L.); (H.Z.)
- Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, Guangzhou 510642, China
| | - Xiaomei Deng
- Department of Forestry, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou 510642, China; (Y.H.); (R.C.); (Y.Y.); (G.L.); (H.Z.)
- Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, Guangzhou 510642, China
- Correspondence: (X.D.); (R.X.)
| | - Ruchun Xi
- Department of Forestry, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou 510642, China; (Y.H.); (R.C.); (Y.Y.); (G.L.); (H.Z.)
- Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, Guangzhou 510642, China
- Correspondence: (X.D.); (R.X.)
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14
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Strouwen A, Nicolaï BM, Goos P. Robust dynamic experiments for the precise estimation of respiration and fermentation parameters of fruit and vegetables. PLoS Comput Biol 2022; 18:e1009610. [PMID: 35020716 PMCID: PMC8789162 DOI: 10.1371/journal.pcbi.1009610] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2021] [Revised: 01/25/2022] [Accepted: 11/03/2021] [Indexed: 11/18/2022] Open
Abstract
Dynamic models based on non-linear differential equations are increasingly being used in many biological applications. Highly informative dynamic experiments are valuable for the identification of these dynamic models. The storage of fresh fruit and vegetables is one such application where dynamic experimentation is gaining momentum. In this paper, we construct optimal O2 and CO2 gas input profiles to estimate the respiration and fermentation kinetics of pear fruit. The optimal input profiles, however, depend on the true values of the respiration and fermentation parameters. Locally optimal design of input profiles, which uses a single initial guess for the parameters, is the traditional method to deal with this issue. This method, however, is very sensitive to the initial values selected for the model parameters. Therefore, we present a robust experimental design approach that can handle uncertainty on the model parameters.
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Affiliation(s)
- Arno Strouwen
- Department of Biosystems, KU Leuven, Leuven, Belgium
- * E-mail:
| | | | - Peter Goos
- Department of Biosystems, KU Leuven, Leuven, Belgium
- Department of Engineering Management, University of Antwerp, Antwerp, Belgium
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15
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Harrison Day BL, Carins-Murphy MR, Brodribb TJ. Reproductive water supply is prioritized during drought in tomato. Plant Cell Environ 2022; 45:69-79. [PMID: 34705293 DOI: 10.1111/pce.14206] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/27/2021] [Revised: 10/09/2021] [Accepted: 10/10/2021] [Indexed: 06/13/2023]
Abstract
Reproductive success largely defines the fitness of plant species. Understanding how heat and drought affect plant reproduction is thus key to predicting future plant fitness under rising global temperatures. Recent work suggests reproductive tissues are highly vulnerable to water stress in perennial plants where reproductive sacrifice could preserve plant survival. However, most crop species are annuals where such a strategy would theoretically reduce fitness. We examined the reproductive strategy of tomato (Solanum lycopersicum var. Rheinlands Ruhm) to determine whether water supply to fruits is prioritized above vegetative tissues during drought. Using optical methods, we mapped xylem cavitation and tissue shrinkage in vegetative and reproductive organs during dehydration to determine the priority of water flow under acute water stress. Stems and peduncles of tomato showed significantly greater xylem cavitation resistance than leaves. This maintenance of intact water supply enabled tomato fruit to continue to expand during acute water stress, utilizing xylem water made available by tissue collapse and early cavitation of leaves. Here, tomato plants prioritize water supply to reproductive tissues, maintaining fruit development under drought conditions. These results emphasize the critical role of water transport in shaping life history and suggest a broad relevance of hydraulic prioritization in plant ecology.
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Affiliation(s)
| | | | - Timothy J Brodribb
- School of Natural Sciences, University of Tasmania, Hobart, Tasmania, Australia
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16
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Liu Z, Wu X, Liu H, Zhang M, Liao W. DNA methylation in tomato fruit ripening. Physiol Plant 2022; 174:e13627. [PMID: 35040145 DOI: 10.1111/ppl.13627] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2021] [Accepted: 01/05/2022] [Indexed: 06/14/2023]
Abstract
Fleshy fruit, the most economical and nutritional value unique to flowering plants, is an important part of our daily diet. Previous studies have shown that fruit ripening is regulated by transcription factors and the plant hormone ethylene, but recent research has also shown that epigenetics also plays an essential role, especially DNA methylation. DNA methylation is the process of transferring -CH3 to the fifth carbon of cytosine residues under the action of methyltransferase to form 5-methylcytosine (5-mC). So far, most works have been focused on tomato. Tomato ripening is dynamically regulated by DNA methylation and demethylation, but the understanding of this mechanism is still in its infancy. The dysfunction of a DNA demethylase, DEMETER-like DNA demethylases 2 (DML2), prevents the ripening of tomato fruits, but immature fruits ripen prematurely under the action of DNA methylation inhibitors. Additionally, studies have shown that the relationship between fruit quality and DNA methylation is not linear, but the specific molecular mechanism is still unclear. Here, we review the recent advances in the role of DNA methylation in tomato fruit ripening, the interaction of ripening transcription factors and DNA methylation, and its effects on quality. Then, a number of questions for future research of DNA methylation regulation in tomato fruit ripening is proposed.
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Affiliation(s)
- Zhiya Liu
- College of Horticulture, Gansu Agricultural University, Lanzhou, China
| | - Xuetong Wu
- College of Horticulture, Gansu Agricultural University, Lanzhou, China
| | - Huwei Liu
- College of Horticulture, Gansu Agricultural University, Lanzhou, China
| | - Meiling Zhang
- College of Science, Gansu Agricultural University, Lanzhou, China
| | - Weibiao Liao
- College of Horticulture, Gansu Agricultural University, Lanzhou, China
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17
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Shi CH, Wang XQ, Xu JF, Zhang YX, Qi B, Jun L. Dissecting the molecular mechanism of russeting in sand pear (Pyrus pyrifolia Nakai) by metabolomics, transcriptomics, and proteomics. Plant J 2021; 108:1644-1661. [PMID: 34623717 DOI: 10.1111/tpj.15532] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2021] [Revised: 09/16/2021] [Accepted: 09/27/2021] [Indexed: 06/13/2023]
Abstract
Brown coloration and a rough appearance as russet and semi-russet (partial russet) are features unique to the popular Asian sand pear (Pyrus pyrifolia Nakai). The degree of russeting is different between different genotypes. Russeting is sensitive to water fluctuations, where excessive rainwater can trigger/stimulate its development. However, the molecular mechanism of russeting is currently unclear. Here, we employed multi-omics, i.e., metabolomics, transcriptomics, and proteomics, and analyzed the effect of different sand pear genotypes and artificial rainfall on russeting of pear fruits. This led to the identification of 79, 64, and 29 differentially produced/expressed metabolites, transcripts, and proteins that are involved in the biosynthesis of suberin, phenylpropane, cutin, and waxes. Further analysis of these differentially expressed genes and their encoded proteins revealed that four of them exhibited high expression at both transcript and protein levels. Transient expression of one such gene, PbHHT1 (accession number 103966555), which encodes ω-hydroxypalmitate-O-feruloyl transferase, in young green non-russet fruits triggered premature suberization in the russeting pear genotypes. This coincided with increased production of 16-feruloyloxypalmitic acid, a conjugated compound between phenols and esters during the polymerization for suberin formation. Collectively, our data from the combined three omics demonstrate that russeting in sand pear is a complex process involving the biosynthesis and transport of suberin and many other secondary metabolites.
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Affiliation(s)
- Chun-Hui Shi
- Forest & Fruit Tree Research Institute, Shanghai Academy of Agriculture Sciences, Shanghai, 201403, China
- College of Horticulture, Hebei Agricultural University, Baoding, Hebei, 071001, China
| | - Xiao-Qing Wang
- Forest & Fruit Tree Research Institute, Shanghai Academy of Agriculture Sciences, Shanghai, 201403, China
| | - Jian-Feng Xu
- College of Horticulture, Hebei Agricultural University, Baoding, Hebei, 071001, China
| | - Yu-Xing Zhang
- College of Horticulture, Hebei Agricultural University, Baoding, Hebei, 071001, China
| | - Baoxiu Qi
- College of Horticulture, Hebei Agricultural University, Baoding, Hebei, 071001, China
- School of Pharmacy and Biomolecular Sciences, Liverpool John Moores University, James Parsons Building, Byrom Street, Liverpool, L3 3AF, UK
- Beijing Advanced Innovation Centre for Tree Breeding by Molecular Design, Beijing University of Agriculture, 7 Beinong Rd, Changping District, Beijing, China
| | - Luo Jun
- Forest & Fruit Tree Research Institute, Shanghai Academy of Agriculture Sciences, Shanghai, 201403, China
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18
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Gao Y, Fan ZQ, Zhang Q, Li HL, Liu GS, Jing Y, Zhang YP, Zhu BZ, Zhu HL, Chen JY, Grierson D, Luo YB, Zhao XD, Fu DQ. A tomato NAC transcription factor, SlNAM1, positively regulates ethylene biosynthesis and the onset of tomato fruit ripening. Plant J 2021; 108:1317-1331. [PMID: 34580960 DOI: 10.1111/tpj.15512] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/27/2019] [Revised: 09/09/2021] [Accepted: 09/21/2021] [Indexed: 06/13/2023]
Abstract
Fruit ripening in tomato (Solanum lycopersicum) is the result of selective expression of ripening-related genes, which are regulated by transcription factors (TFs). The NAC (NAM, ATAF1/2, and CUC2) TF family is one of the largest families of plant-specific TFs and members are involved in a variety of plant physiological activities, including fruit ripening. Fruit ripening-associated NAC TFs studied in tomato to date include NAC-NOR (non-ripening), SlNOR-like1 (non-ripening like1), SlNAC1, and SlNAC4. Considering the large number of NAC genes in the tomato genome, there is little information about the possible roles of other NAC members in fruit ripening, and research on their target genes is lacking. In this study, we characterize SlNAM1, a NAC TF, which positively regulates the initiation of tomato fruit ripening via its regulation of ethylene biosynthesis. The onset of fruit ripening in slnam1-deficient mutants created by CRISPR/Cas9 (clustered regularly interspaced short palindromic repeats and CRISPR-associated protein 9) technology was delayed, whereas fruit ripening in OE-SlNAM1 lines was accelerated compared with the wild type. The results of RNA-sequencing (RNA-seq) and promoter analysis suggested that SlNAM1 directly binds to the promoters of two key ethylene biosynthesis genes (1-aminocyclopropane-1-carboxylate synthase: SlACS2 and SlACS4) and activates their expression. This hypothesis was confirmed by electrophoretic mobility shift assays and dual-luciferase reporter assay. Our findings provide insights into the mechanisms of ethylene production and enrich understanding of the tomato fruit ripening regulatory network.
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Affiliation(s)
- Ying Gao
- Laboratory of Fruit Biology, College of Food Science & Nutritional Engineering, China Agricultural University, Beijing, 100083, China
- Laboratory of Fruit Quality Biology, Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Zijingang Campus, Hangzhou, 310058, China
| | - Zhong-Qi Fan
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangdong Provincial Key Laboratory of Postharvest Science of Fruits and Vegetables, College of Horticulture, South China Agricultural University, Guangzhou, 510642, China
- Institute of Postharvest Technology of Agricultural Products, College of Food Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, China
| | - Qiang Zhang
- School of Biology and Basic Medical Sciences, Soochow University, Suzhou, 215000, China
| | - Hong-Li Li
- Laboratory of Fruit Biology, College of Food Science & Nutritional Engineering, China Agricultural University, Beijing, 100083, China
| | - Gang-Shuai Liu
- Laboratory of Fruit Biology, College of Food Science & Nutritional Engineering, China Agricultural University, Beijing, 100083, China
| | - Yuan Jing
- Laboratory of Fruit Biology, College of Food Science & Nutritional Engineering, China Agricultural University, Beijing, 100083, China
| | - Yi-Ping Zhang
- Laboratory of Fruit Biology, College of Food Science & Nutritional Engineering, China Agricultural University, Beijing, 100083, China
| | - Ben-Zhong Zhu
- Laboratory of Fruit Biology, College of Food Science & Nutritional Engineering, China Agricultural University, Beijing, 100083, China
| | - Hong-Liang Zhu
- Laboratory of Fruit Biology, College of Food Science & Nutritional Engineering, China Agricultural University, Beijing, 100083, China
| | - Jian-Ye Chen
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangdong Provincial Key Laboratory of Postharvest Science of Fruits and Vegetables, College of Horticulture, South China Agricultural University, Guangzhou, 510642, China
| | - Donald Grierson
- Laboratory of Fruit Quality Biology, Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Zijingang Campus, Hangzhou, 310058, China
- Plant Sciences Division, School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough, LE12 5RD, UK
| | - Yun-Bo Luo
- Laboratory of Fruit Biology, College of Food Science & Nutritional Engineering, China Agricultural University, Beijing, 100083, China
| | - Xiao-Dan Zhao
- School of Food and Chemical Engineering, Beijing Technology and Business University, Beijing, 100048, China
| | - Da-Qi Fu
- Laboratory of Fruit Biology, College of Food Science & Nutritional Engineering, China Agricultural University, Beijing, 100083, China
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19
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Ding F, Li H, Wang J, Peng H, Chen H, Hu F, Lai B, Wei Y, Ma W, Li H, He X, Zhang S. Development of molecular markers based on the promoter difference of LcFT1 to discriminate easy- and difficult-flowering litchi germplasm resources and its application in crossbreeding. BMC Plant Biol 2021; 21:539. [PMID: 34784881 PMCID: PMC8594225 DOI: 10.1186/s12870-021-03309-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/01/2021] [Accepted: 10/25/2021] [Indexed: 06/13/2023]
Abstract
BACKGROUND Litchi is a well-known subtropical fruit crop. However, irregular bearing attributed to unstable flowering is a major ongoing problem for the development of the litchi industry. In a previous study, our laboratory proved that litchi flowering was induced by low temperature and that a FLOWERING LOCUS T (FT) homologue gene named LcFT1 played a pivotal role in this process. The present study aimed to understand the natural variation in FT among litchi germplasm resources and designed markers to verify easy- and difficult-flowering litchi germplasms. A grafting experiment was also carried out to explore whether it could shorten the seedling stage of litchi seedlings. RESULTS Two types of LcFT1 promoter existed in different litchi germplasm resources, and we named them the 'easy-flowering type of LcFT1 promoter' and 'difficult-flowering type of LcFT1 promoter', which resulted in three different LcFT1 genotypes of litchi germplasm resources, including the homozygous easy-flowering type of the LcFT1 genotype, homozygous difficult-flowering type of the LcFT1 genotype and heterozygous LcFT1 genotype of litchi germplasm resources. The homozygous easy-flowering type of the LcFT1 genotype and heterozygous LcFT1 genotype of the litchi germplasm resources completed their floral induction more easily than the homozygous difficult-flowering type of the LcFT1 genotype of litchi germplasm resources. Herein, we designed two kinds of efficient molecular markers based on the difference in LcFT1 promoter sequences and applied them to identify of the easy- and difficult-flowering litchi germplasm resources. These two kinds of molecular markers were capable of clearly distinguishing the easy- from difficult-flowering litchi germplasm resources at the seedling stage and provided the same results. Meanwhile, grafting the scion of seedlings to the annual branches of adult litchi trees could significantly shorten the seedling stage. CONCLUSIONS Understanding the flowering characteristics of litchi germplasm resources is essential for easy-flowering litchi breeding. In the present study, molecular markers provide a rapid and accurate approach for identifying the flowering characteristics. The application of these molecular markers not only significantly shortened the artificial crossbreeding cycle of easy-flowering litchi cultivars but also greatly saved manpower, material resources and land.
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Affiliation(s)
- Feng Ding
- Guangxi Crop Genetic Improvement and Biotechnology Key Laboratory, Guangxi Academy of Agricultural Sciences, Nanning, 530007, Guangxi, China
- Horticultural Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, 530007, Guangxi, China
- College of Agriculture, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi University, Nanning, 530004, Guangxi, China
| | - Haoran Li
- Guangxi Crop Genetic Improvement and Biotechnology Key Laboratory, Guangxi Academy of Agricultural Sciences, Nanning, 530007, Guangxi, China
| | - Jinying Wang
- College of Agriculture, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi University, Nanning, 530004, Guangxi, China
| | - Hongxiang Peng
- Horticultural Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, 530007, Guangxi, China
| | - Houbin Chen
- Horticulture College, South China Agricultural University, Guangzhou, 510642, Guangdong, China
| | - Fuchu Hu
- Institute of Tropical Fruit Trees, Hainan Academy of Agricultural Sciences/Hainan Provincial Key Laboratory of Tropical Fruit Tree Biology, Haikou, 510642, Hainan, China
| | - Biao Lai
- School of Advanced Agriculture and Bioengineering, Yangtze Normal University, Chongqing, 408100, China
| | - Yongzan Wei
- Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, 571101, Hainan, China
| | - Wuqiang Ma
- College of Horticulture, Hainan University, Haikou, 570228, Hainan, China
| | - Hongli Li
- Horticultural Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, 530007, Guangxi, China
| | - Xinhua He
- College of Agriculture, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi University, Nanning, 530004, Guangxi, China
| | - Shuwei Zhang
- Horticultural Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, 530007, Guangxi, China.
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20
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Yang H, Tian C, Ji S, Ni F, Fan X, Yang Y, Sun C, Gong H, Zhang A. Integrative analyses of metabolome and transcriptome reveals metabolomic variations and candidate genes involved in sweet cherry (Prunus avium L.) fruit quality during development and ripening. PLoS One 2021; 16:e0260004. [PMID: 34780562 PMCID: PMC8592472 DOI: 10.1371/journal.pone.0260004] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2021] [Accepted: 10/30/2021] [Indexed: 01/05/2023] Open
Abstract
Sweet cherry (Prunus avium L.), one of the most appreciated and most important commercial temperate fruits, has high sensory quality and nutritional value. Investigating its metabolic variations provides valuable information on the formation of fruit quality. In this study, widely targeted LC-MS/MS based metabolomics was used to identify and quantify metabolic changes during 'Black Pearl' sweet cherry development and ripening. A total of 263 significant differentially expressed metabolites (DEMs) were detected during the four fruit-development stages. Significant differences were observed in the composition and content of compounds in the four stages of cherry development, especially sugars, organic acids, and flavonoids. Moreover, transcriptome analysis provided a molecular basis for metabolic variations during fruit development. A total of 6724 significant differentially expressed genes (DEGs) were identified. Further correlation analysis of major DEMs and DEGs showed that 19 key DEGs were involved in sugar metabolism, 23 key DEGs in organic acid metabolism, and 13 key DEGs in flavonoid metabolism. The upregulated genes involved in the flavonoid pathway probably play an important role in regulating the rapid increase of anthocyanin content during fruit development. These comprehensive analysis data provide a better understanding to improve fruit quality traits based on molecular and metabolic levels.
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Affiliation(s)
- Haiying Yang
- School of Food Engineering, Ludong University, Yantai, Shandong, 264025, PR China
| | - Changping Tian
- Cherry Research Department, Yantai Agricultural Science and Technology Institute, No.26, West Gangcheng Street, Yantai, 265500, China
| | - Shujun Ji
- School of Food Engineering, Ludong University, Yantai, Shandong, 264025, PR China
| | - Fengzhu Ni
- School of Food Engineering, Ludong University, Yantai, Shandong, 264025, PR China
| | - Xinguang Fan
- School of Food Engineering, Ludong University, Yantai, Shandong, 264025, PR China
| | - Yanqing Yang
- School of Food Engineering, Ludong University, Yantai, Shandong, 264025, PR China
| | - Chanchan Sun
- Key Laboratory of Food Nutrition and Safety, Tianjin University of Science and Technology, Ministry of Education, Tianjin, 300457, China
| | - Hansheng Gong
- School of Food Engineering, Ludong University, Yantai, Shandong, 264025, PR China
| | - Aidi Zhang
- School of Food Engineering, Ludong University, Yantai, Shandong, 264025, PR China
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21
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Herrera-González JA, Bautista-Baños S, Serrano M, Romanazzi G, Gutiérrez-Martínez P. Non-Chemical Treatments for the Pre- and Post-Harvest Elicitation of Defense Mechanisms in the Fungi-Avocado Pathosystem. Molecules 2021; 26:molecules26226819. [PMID: 34833910 PMCID: PMC8617955 DOI: 10.3390/molecules26226819] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2021] [Revised: 11/05/2021] [Accepted: 11/09/2021] [Indexed: 01/10/2023] Open
Abstract
The greatest challenge for the avocado (Persea americana Miller) industry is to maintain the quality of the fruit to meet consumer requirements. Anthracnose is considered the most important disease in this industry, and it is caused by different species of the genus Colletotrichum, although other pathogens can be equally important. The defense mechanisms that fruit naturally uses can be triggered in response to the attack of pathogenic microorganisms and also by the application of exogenous elicitors in the form of GRAS compounds. The elicitors are recognized by receptors called PRRs, which are proteins located on the avocado fruit cell surface that have high affinity and specificity for PAMPs, MAMPs, and DAMPs. The activation of defense-signaling pathways depends on ethylene, salicylic, and jasmonic acids, and it occurs hours or days after PTI activation. These defense mechanisms aim to drive the pathogen to death. The application of essential oils, antagonists, volatile compounds, chitosan and silicon has been documented in vitro and on avocado fruit, showing some of them to have elicitor and fungicidal effects that are reflected in the postharvest quality of the fruit and a lower incidence of diseases. The main focus of these studies has been on anthracnose diseases. This review presents the most relevant advances in the use of natural compounds with antifungal and elicitor effects in plant tissues.
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Affiliation(s)
- Juan Antonio Herrera-González
- Laboratorio Integral de Investigación en Alimentos, TecNM-Instituto Tecnológico de Tepic, Av. Tecnológico 2595, Lagos de Country, Tepic 63175, Mexico;
- Instituto Nacional de Investigaciones Forestales, Agrícolas y Pecuarias, Campo Experimental Uruapan, Av. Latinoamericana 1101, Col. Revolución, Uruapan 60150, Mexico
| | - Silvia Bautista-Baños
- Centro de Desarrollo de Productos Bióticos, Instituto Politécnico Nacional, Carretera Yautepec-Jojutla Km 6, CEPROBI 8, San Isidro, Yautepec 62730, Mexico;
| | - Mario Serrano
- Centro de Ciencias Genómicas, Universidad Nacional Autónoma de Mexico, Cuernavaca 62209, Mexico;
| | - Gianfranco Romanazzi
- Department of Agricultural, Food and Environmental Sciences, Marche Polytechnic University, 60131 Ancona, Italy;
| | - Porfirio Gutiérrez-Martínez
- Laboratorio Integral de Investigación en Alimentos, TecNM-Instituto Tecnológico de Tepic, Av. Tecnológico 2595, Lagos de Country, Tepic 63175, Mexico;
- Correspondence:
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22
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Goetz M, Rabinovich M, Smith HM. The role of auxin and sugar signaling in dominance inhibition of inflorescence growth by fruit load. Plant Physiol 2021; 187:1189-1201. [PMID: 34734274 PMCID: PMC8566266 DOI: 10.1093/plphys/kiab237] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2021] [Accepted: 05/03/2021] [Indexed: 05/29/2023]
Abstract
Dominance inhibition of shoot growth by fruit load is a major factor that regulates shoot architecture and limits yield in agriculture and horticulture crops. In annual plants, the inhibition of inflorescence growth by fruit load occurs at a late stage of inflorescence development termed the end of flowering transition. Physiological studies show this transition is mediated by production and export of auxin from developing fruits in close proximity to the inflorescence apex. In the meristem, cessation of inflorescence growth is controlled in part by the age-dependent pathway, which regulates the timing of arrest. Here, we show the end of flowering transition is a two-step process in Arabidopsis (Arabidopsis thaliana). The first stage is characterized by a cessation of inflorescence growth, while immature fruit continues to develop. At this stage, dominance inhibition of inflorescence growth by fruit load is associated with a selective dampening of auxin transport in the apical region of the stem. Subsequently, an increase in auxin response in the vascular tissues of the apical stem where developing fruits are attached marks the second stage for the end of flowering transition. Similar to the vegetative and floral transition, the end of flowering transition is associated with a change in sugar signaling and metabolism in the inflorescence apex. Taken together, our results suggest that during the end of flowering transition, dominance inhibition of inflorescence shoot growth by fruit load is mediated by auxin and sugar signaling.
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Affiliation(s)
- Marc Goetz
- CSIRO Agriculture and Food, Locked Bag 2, Glen Osmond, SA 5064, Australia
| | - Maia Rabinovich
- CSIRO Agriculture and Food, Locked Bag 2, Glen Osmond, SA 5064, Australia
| | - Harley M Smith
- CSIRO Agriculture and Food, Locked Bag 2, Glen Osmond, SA 5064, Australia
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23
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Li M, Wu Z, Gu H, Cheng D, Guo X, Li L, Shi C, Xu G, Gu S, Abid M, Zhong Y, Qi X, Chen J. AvNAC030, a NAC Domain Transcription Factor, Enhances Salt Stress Tolerance in Kiwifruit. Int J Mol Sci 2021; 22:ijms222111897. [PMID: 34769325 PMCID: PMC8585034 DOI: 10.3390/ijms222111897] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Revised: 10/29/2021] [Accepted: 10/30/2021] [Indexed: 01/21/2023] Open
Abstract
Kiwifruit (Actinidia chinensis Planch) is suitable for neutral acid soil. However, soil salinization is increasing in kiwifruit production areas, which has adverse effects on the growth and development of plants, leading to declining yields and quality. Therefore, analyzing the salt tolerance regulation mechanism can provide a theoretical basis for the industrial application and germplasm improvement of kiwifruit. We identified 120 NAC members and divided them into 13 subfamilies according to phylogenetic analysis. Subsequently, we conducted a comprehensive and systematic analysis based on the conserved motifs, key amino acid residues in the NAC domain, expression patterns, and protein interaction network predictions and screened the candidate gene AvNAC030. In order to study its function, we adopted the method of heterologous expression in Arabidopsis. Compared with the control, the overexpression plants had higher osmotic adjustment ability and improved antioxidant defense mechanism. These results suggest that AvNAC030 plays a positive role in the salt tolerance regulation mechanism in kiwifruit.
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Affiliation(s)
- Ming Li
- Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou 450009, China; (Z.W.); (H.G.); (D.C.); (X.G.); (L.L.); (C.S.); (G.X.); (S.G.); (Y.Z.); (X.Q.); (J.C.)
- Correspondence: (M.L.); (M.A.)
| | - Zhiyong Wu
- Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou 450009, China; (Z.W.); (H.G.); (D.C.); (X.G.); (L.L.); (C.S.); (G.X.); (S.G.); (Y.Z.); (X.Q.); (J.C.)
| | - Hong Gu
- Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou 450009, China; (Z.W.); (H.G.); (D.C.); (X.G.); (L.L.); (C.S.); (G.X.); (S.G.); (Y.Z.); (X.Q.); (J.C.)
| | - Dawei Cheng
- Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou 450009, China; (Z.W.); (H.G.); (D.C.); (X.G.); (L.L.); (C.S.); (G.X.); (S.G.); (Y.Z.); (X.Q.); (J.C.)
| | - Xizhi Guo
- Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou 450009, China; (Z.W.); (H.G.); (D.C.); (X.G.); (L.L.); (C.S.); (G.X.); (S.G.); (Y.Z.); (X.Q.); (J.C.)
| | - Lan Li
- Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou 450009, China; (Z.W.); (H.G.); (D.C.); (X.G.); (L.L.); (C.S.); (G.X.); (S.G.); (Y.Z.); (X.Q.); (J.C.)
| | - Caiyun Shi
- Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou 450009, China; (Z.W.); (H.G.); (D.C.); (X.G.); (L.L.); (C.S.); (G.X.); (S.G.); (Y.Z.); (X.Q.); (J.C.)
| | - Guoyi Xu
- Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou 450009, China; (Z.W.); (H.G.); (D.C.); (X.G.); (L.L.); (C.S.); (G.X.); (S.G.); (Y.Z.); (X.Q.); (J.C.)
| | - Shichao Gu
- Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou 450009, China; (Z.W.); (H.G.); (D.C.); (X.G.); (L.L.); (C.S.); (G.X.); (S.G.); (Y.Z.); (X.Q.); (J.C.)
| | - Muhammad Abid
- Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou 450009, China; (Z.W.); (H.G.); (D.C.); (X.G.); (L.L.); (C.S.); (G.X.); (S.G.); (Y.Z.); (X.Q.); (J.C.)
- Lushan Botanical Garden, Chinese Academy of Sciences, Jiujiang 332900, China
- Correspondence: (M.L.); (M.A.)
| | - Yunpeng Zhong
- Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou 450009, China; (Z.W.); (H.G.); (D.C.); (X.G.); (L.L.); (C.S.); (G.X.); (S.G.); (Y.Z.); (X.Q.); (J.C.)
| | - Xiujuan Qi
- Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou 450009, China; (Z.W.); (H.G.); (D.C.); (X.G.); (L.L.); (C.S.); (G.X.); (S.G.); (Y.Z.); (X.Q.); (J.C.)
| | - Jinyong Chen
- Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou 450009, China; (Z.W.); (H.G.); (D.C.); (X.G.); (L.L.); (C.S.); (G.X.); (S.G.); (Y.Z.); (X.Q.); (J.C.)
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24
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Huang Z, Shen F, Chen Y, Cao K, Wang L. Chromosome-scale genome assembly and population genomics provide insights into the adaptation, domestication, and flavonoid metabolism of Chinese plum. Plant J 2021; 108:1174-1192. [PMID: 34473873 DOI: 10.1111/tpj.15482] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2020] [Revised: 08/27/2021] [Accepted: 08/30/2021] [Indexed: 06/13/2023]
Abstract
Globally, commercialized plum cultivars are mostly diploid Chinese plums (Prunus salicina Lindl.), also known as Japanese plums, and are one of the most abundant and variable fruit tree species. To advance Prunus genomic research, we present a chromosome-scale P. salicina genome assembly, constructed using an integrated strategy that combines Illumina, Oxford Nanopore, and high-throughput chromosome conformation capture (Hi-C) sequencing. The high-quality genome assembly consists of a 318.6-Mb sequence (contig N50 length of 2.3 Mb) with eight pseudo-chromosomes. The expansion of the P. salicina genome is led by recent segmental duplications and a long terminal repeat burst of approximately 0.2 Mya. This resulted in a significant expansion of gene families associated with flavonoid metabolism and plant resistance, which impacted fruit flavor and increased species adaptability. Population structure and domestication history suggest that Chinese plum may have originated from South China and provides a domestication route with accompanying genomic variations. Selection sweep and genetic diversity analysis enabled the identification of several critical genes associated with flowering time, stress tolerance, and flavonoid metabolism, demonstrating the essential roles of related pathways during domestication. Furthermore, we reconstructed and exploited flavonoid-anthocyanin metabolism using multi-omics analysis in Chinese plum and proposed a complete metabolic pathway. Collectively, our results will facilitate further candidate gene discovery for important agronomic traits in Chinese plum and provide insights into future functional genomic studies and DNA-informed breeding.
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Affiliation(s)
- Zhenyu Huang
- Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Science, Zhengzhou, Henan, 450009, China
| | - Fei Shen
- Beijing Agro-Biotechnology Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China
| | - Yuling Chen
- Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Science, Zhengzhou, Henan, 450009, China
| | - Ke Cao
- Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Science, Zhengzhou, Henan, 450009, China
| | - Lirong Wang
- Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Science, Zhengzhou, Henan, 450009, China
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25
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Morcillo F, Serret J, Beckers A, Collin M, Tisné S, George S, Poveda R, Louise C, Tranbarger TJ. A Non-Shedding Fruit Elaeis oleifera Palm Reveals Perturbations to Hormone Signaling, ROS Homeostasis, and Hemicellulose Metabolism. Genes (Basel) 2021; 12:1724. [PMID: 34828330 PMCID: PMC8621672 DOI: 10.3390/genes12111724] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Revised: 10/22/2021] [Accepted: 10/26/2021] [Indexed: 11/16/2022] Open
Abstract
The developmentally programmed loss of a plant organ is called abscission. This process is characterized by the ultimate separation of adjacent cells in the abscission zone (AZ). The discovery of an American oil palm (Elaeis oleifera) variant that does not shed its has allowed for the study of the mechanisms of ripe fruit abscission in this species. A comparative transcriptome analysis was performed to compare the fruit AZs of the non-shedding E. oleifera variant to an individual of the same progeny that sheds its ripe fruit normally. The study provides evidence for widespread perturbation to gene expression in the AZ of the non-shedding variant, compared to the normal fruit-shedding control, and offers insight into abscission-related functions. Beyond the genes with known or suspected roles during organ abscission or indehiscence that were identified, a list of genes with hormone-related functions, including ethylene, jasmonic acid, abscisic acid, cytokinin and salicylic acid, in addition to reactive oxygen species (ROS) metabolism, transcriptional responses and signaling pathways, was compiled. The results also allowed a comparison between the ripe fruit abscission processes of the African and American oil palm species at the molecular level and revealed commonalities with environmental stress pathways.
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Affiliation(s)
- Fabienne Morcillo
- DIADE (Diversité, Adaptation, Développement des Plantes), University of Montpellier, CIRAD (Centre de Coopération Internationale en Recherche Agronomique pour le Développement), IRD (Institut de Recherche pour le Développement), 34393 Montpellier, France; (F.M.); (J.S.); (A.B.); (M.C.)
- CIRAD, UMR (Unité Mixte de Recherche) DIADE, 34398 Montpellier, France
| | - Julien Serret
- DIADE (Diversité, Adaptation, Développement des Plantes), University of Montpellier, CIRAD (Centre de Coopération Internationale en Recherche Agronomique pour le Développement), IRD (Institut de Recherche pour le Développement), 34393 Montpellier, France; (F.M.); (J.S.); (A.B.); (M.C.)
| | - Antoine Beckers
- DIADE (Diversité, Adaptation, Développement des Plantes), University of Montpellier, CIRAD (Centre de Coopération Internationale en Recherche Agronomique pour le Développement), IRD (Institut de Recherche pour le Développement), 34393 Montpellier, France; (F.M.); (J.S.); (A.B.); (M.C.)
| | - Myriam Collin
- DIADE (Diversité, Adaptation, Développement des Plantes), University of Montpellier, CIRAD (Centre de Coopération Internationale en Recherche Agronomique pour le Développement), IRD (Institut de Recherche pour le Développement), 34393 Montpellier, France; (F.M.); (J.S.); (A.B.); (M.C.)
| | - Sebastien Tisné
- CIRAD, UMR AGAP (Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales), 34398 Montpellier, France;
- AGAP, University of Montpellier, CIRAD, INRAE (Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement), Institut Agro, 34398 Montpellier, France
| | - Simon George
- MGX-Montpellier GenomiX, University of Montpellier, CNRS (Centre National de la Recherche Scientifique), INSERM (Institut National de la Santé et de la Recherche Médicale), 34094 Montpellier, France;
| | - Roberto Poveda
- DANEC, Sangolqui/Rumiñahui, Sangolquí, Pichincha 171102, Ecuador;
| | | | - Timothy John Tranbarger
- DIADE (Diversité, Adaptation, Développement des Plantes), University of Montpellier, CIRAD (Centre de Coopération Internationale en Recherche Agronomique pour le Développement), IRD (Institut de Recherche pour le Développement), 34393 Montpellier, France; (F.M.); (J.S.); (A.B.); (M.C.)
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26
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Sun T. STAY-GREEN in orange: uncoupled functions in chlorophyll and carotenoid accumulation. Plant Physiol 2021; 187:667-669. [PMID: 34608976 PMCID: PMC8491069 DOI: 10.1093/plphys/kiab360] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2021] [Accepted: 07/15/2021] [Indexed: 06/13/2023]
Affiliation(s)
- Tianhu Sun
- Plant Breeding and Genetics Section, School of Integrative Plant Science, Cornell University, Ithaca, New York 14853, USA
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Pereira L, Zhang L, Sapkota M, Ramos A, Razifard H, Caicedo AL, van der Knaap E. Unraveling the genetics of tomato fruit weight during crop domestication and diversification. Theor Appl Genet 2021; 134:3363-3378. [PMID: 34283260 PMCID: PMC8440300 DOI: 10.1007/s00122-021-03902-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2021] [Accepted: 06/28/2021] [Indexed: 05/13/2023]
Abstract
Six novel fruit weight QTLs were identified in tomato using multiple bi-parental populations developed from ancestral accessions. Beneficial alleles at these loci arose in semi-domesticated subpopulations and were likely left behind. This study paves the way to introgress these alleles into breeding programs. The size and weight of edible organs have been strongly selected during crop domestication. Concurrently, human have also focused on nutritional and cultural characteristics of fruits and vegetables, at times countering selective pressures on beneficial size and weight alleles. Therefore, it is likely that novel improvement alleles for organ weight still segregate in ancestral germplasm. To date, five domestication and diversification genes affecting tomato fruit weight have been identified, yet the genetic basis for increases in weight has not been fully accounted for. We found that fruit weight increased gradually during domestication and diversification, and semi-domesticated subpopulations featured high phenotypic and nucleotide diversity. Columella and septum fruit tissues were proportionally increased, suggesting targeted selection. We developed twenty-one F2 populations with parents fixed for the known fruit weight genes, corresponding to putative key transitions from wild to fully domesticated tomatoes. These parents also showed differences in fruit weight attributes as well as the developmental timing of size increase. A subset of populations was targeted for QTL-seq, leading to the identification of six uncloned fruit weight QTLs. Three QTLs, located on chromosomes 1, 2 and 3, were subsequently validated by progeny testing. By exploring the segregation of the known fruit weight genes and the identified QTLs, we estimated that most beneficial alleles in the newly identified loci arose in semi-domesticated subpopulations from South America and were not likely transmitted to fully domesticated landraces. Therefore, these alleles could be incorporated into breeding programs using the germplasm and genetic resources identified in this study.
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Affiliation(s)
- Lara Pereira
- Center for Applied Genetic Technologies, University of Georgia, Athens, GA, USA
| | - Lei Zhang
- Center for Applied Genetic Technologies, University of Georgia, Athens, GA, USA
| | - Manoj Sapkota
- Institute for Plant Breeding, Genetics and Genomics, University of Georgia, Athens, GA, USA
| | - Alexis Ramos
- Institute for Plant Breeding, Genetics and Genomics, University of Georgia, Athens, GA, USA
| | - Hamid Razifard
- Biology Department, University of Massachusetts Amherst, Amherst, MA, USA
| | - Ana L Caicedo
- Biology Department, University of Massachusetts Amherst, Amherst, MA, USA
| | - Esther van der Knaap
- Center for Applied Genetic Technologies, University of Georgia, Athens, GA, USA.
- Institute for Plant Breeding, Genetics and Genomics, University of Georgia, Athens, GA, USA.
- Department of Horticulture, University of Georgia, Athens, GA, USA.
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Samkumar A, Jones D, Karppinen K, Dare AP, Sipari N, Espley RV, Martinussen I, Jaakola L. Red and blue light treatments of ripening bilberry fruits reveal differences in signalling through abscisic acid-regulated anthocyanin biosynthesis. Plant Cell Environ 2021; 44:3227-3245. [PMID: 34337774 DOI: 10.1111/pce.14158] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2021] [Revised: 07/19/2021] [Accepted: 07/19/2021] [Indexed: 05/28/2023]
Abstract
The biosynthesis of anthocyanins has been shown to be influenced by light quality. However, the molecular mechanisms underlying the light-mediated regulation of fruit anthocyanin biosynthesis are not well understood. In this study, we analysed the effects of supplemental red and blue light on the anthocyanin biosynthesis in non-climacteric bilberry (Vaccinium myrtillus L.). After 6 days of continuous irradiation during ripening, both red and blue light elevated concentration of anthocyanins, up to 12- and 4-folds, respectively, compared to the control. Transcriptomic analysis of ripening berries showed that both light treatments up-regulated all the major anthocyanin structural genes, the key regulatory MYB transcription factors and abscisic acid (ABA) biosynthetic genes. However, higher induction of specific genes of anthocyanin and delphinidin biosynthesis alongside ABA signal perception and metabolism were found in red light. The difference in red and blue light signalling was found in 9-cis-epoxycarotenoid dioxygenase (NCED), ABA receptor pyrabactin resistance-like (PYL) and catabolic ABA-8'hydroxylase gene expression. Red light also up-regulated expression of soluble N-ethylmaleimide-sensitive factor attachment protein receptor (SNARE) domain transporters, which may indicate involvement of these proteins in vesicular trafficking of anthocyanins during fruit ripening. Our results suggest differential signal transduction and transport mechanisms between red and blue light in ABA-regulated anthocyanin and delphinidin biosynthesis during bilberry fruit ripening.
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Affiliation(s)
- Amos Samkumar
- Department of Arctic and Marine Biology, UiT The Arctic University of Norway, Tromsø, Norway
| | - Dan Jones
- The New Zealand Institute for Plant and Food Research Ltd., Auckland, New Zealand
| | - Katja Karppinen
- Department of Arctic and Marine Biology, UiT The Arctic University of Norway, Tromsø, Norway
| | - Andrew P Dare
- The New Zealand Institute for Plant and Food Research Ltd., Auckland, New Zealand
| | - Nina Sipari
- Viikki Metabolomics Unit, Organismal and Evolutionary Biology Research Programme, University of Helsinki, Helsinki, Finland
| | - Richard V Espley
- The New Zealand Institute for Plant and Food Research Ltd., Auckland, New Zealand
| | | | - Laura Jaakola
- Department of Arctic and Marine Biology, UiT The Arctic University of Norway, Tromsø, Norway
- Norwegian Institute of Bioeconomy Research, Ås, Norway
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29
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Wei Y, Jin J, Xu Y, Liu W, Yang G, Bu H, Li T, Wang A. Ethylene-activated MdPUB24 mediates ubiquitination of MdBEL7 to promote chlorophyll degradation in apple fruit. Plant J 2021; 108:169-182. [PMID: 34296800 DOI: 10.1111/tpj.15432] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2021] [Revised: 07/02/2021] [Accepted: 07/20/2021] [Indexed: 05/21/2023]
Abstract
Chlorophyll (Chl) degradation is a natural phenomenon that occurs during ripening in many fleshy fruit species, and also during fruit storage. The plant hormone ethylene is a key factor in promoting Chl degradation during fruit storage, but the mechanisms involved in this induction are largely unknown. In this study, an apple (Malus domestica) BEL1-LIKE HOMEODOMAIN transcription factor 7 (MdBEL7), potentially functioning as a transcriptional repressor of the Chl catabolic genes (CCGs), including MdCLH, MdPPH2 and MdRCCR2, was identified as a partner of the ethylene-activated U-box type E3 ubiquitin ligase MdPUB24 in a yeast library screen. Yeast-two-hybrid, co-immunoprecipitation and luciferase complementation imaging assays were then used to verify the interaction between MdBEL7 and MdPUB24. In vitro and in vivo ubiquitination experiments revealed that MdPUB24 functions as an E3 ubiquitin ligase to ubiquitinate MdBEL7, thereby causing its degradation through the 26S proteasome pathway. Transient overexpression of MdPUB24 in apple fruit led to a decrease in MdBEL7 abundance and increased expression of CCG genes, including MdCLH, MdPPH2 and MdRCCR2, as well as greater Chl degradation. Taken together, the data indicated that an ethylene-activated U-box type E3 ubiquitin ligase MdPUB24 directly interacts with and ubiquitinates MdBEL7. Consequent degradation of MdBEL7 results in enhanced expression of MdCLH, MdPPH2 and MdRCCR2, and thus Chl degradation during apple fruit storage. Our results reveal that an ethylene-MdPUB24-MdBEL7 module regulates Chl degradation by post-translational modification during apple fruit storage.
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Affiliation(s)
- Yun Wei
- College of Horticulture, Shenyang Agricultural University, Shenyang, 110866, China
- National & Local Joint Engineering Research Center of Northern Horticultural Facilities Design & Application Technology (Liaoning), Shenyang, 110866, China
- Key Laboratory of Fruit Postharvest Biology, Liaoning Province, 110866, China
| | - Juntong Jin
- College of Horticulture, Shenyang Agricultural University, Shenyang, 110866, China
- National & Local Joint Engineering Research Center of Northern Horticultural Facilities Design & Application Technology (Liaoning), Shenyang, 110866, China
- Key Laboratory of Fruit Postharvest Biology, Liaoning Province, 110866, China
| | - Yaxiu Xu
- College of Horticulture, Shenyang Agricultural University, Shenyang, 110866, China
- National & Local Joint Engineering Research Center of Northern Horticultural Facilities Design & Application Technology (Liaoning), Shenyang, 110866, China
- Key Laboratory of Fruit Postharvest Biology, Liaoning Province, 110866, China
| | - Weiting Liu
- College of Horticulture, Shenyang Agricultural University, Shenyang, 110866, China
- National & Local Joint Engineering Research Center of Northern Horticultural Facilities Design & Application Technology (Liaoning), Shenyang, 110866, China
- Key Laboratory of Fruit Postharvest Biology, Liaoning Province, 110866, China
| | - Guangxin Yang
- College of Horticulture, Shenyang Agricultural University, Shenyang, 110866, China
- National & Local Joint Engineering Research Center of Northern Horticultural Facilities Design & Application Technology (Liaoning), Shenyang, 110866, China
- Key Laboratory of Fruit Postharvest Biology, Liaoning Province, 110866, China
| | - Haidong Bu
- College of Horticulture, Shenyang Agricultural University, Shenyang, 110866, China
- National & Local Joint Engineering Research Center of Northern Horticultural Facilities Design & Application Technology (Liaoning), Shenyang, 110866, China
- Key Laboratory of Fruit Postharvest Biology, Liaoning Province, 110866, China
| | - Tong Li
- College of Horticulture, Shenyang Agricultural University, Shenyang, 110866, China
- National & Local Joint Engineering Research Center of Northern Horticultural Facilities Design & Application Technology (Liaoning), Shenyang, 110866, China
- Key Laboratory of Fruit Postharvest Biology, Liaoning Province, 110866, China
| | - Aide Wang
- College of Horticulture, Shenyang Agricultural University, Shenyang, 110866, China
- National & Local Joint Engineering Research Center of Northern Horticultural Facilities Design & Application Technology (Liaoning), Shenyang, 110866, China
- Key Laboratory of Fruit Postharvest Biology, Liaoning Province, 110866, China
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Abstract
A major challenge to the papaya industry is inconsistency in fruit quality and, in particular, flavour, which is a complex trait that comprises taste perception in the mouth (sweetness, acidity, or bitterness) and aroma produced by several volatile compounds. Current commercial varieties vary greatly in their taste, likely due to historical prioritised selection for fruit appearance as well as large environmental effects. Therefore, it is important to better understand the genetic and biochemical mechanisms and biosynthesis pathways underpinning preferable flavour in order to select and breed for better tasting new commercial papaya varieties. As an initial step, objectively measurable standards of the compound profiles that provide papaya's taste and aroma, together with 'mouth feel', are required. This review presents an overview of the approaches to characterise the flavour profiles of papaya through sugar component determination, volatile compound detection, sensory panel testing, as well as genomics-based studies to identify the papaya flavour.
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Affiliation(s)
| | - Rebecca Ford
- Centre for Planetary Health and Food Security, School of Environment and Science, Griffith University, Nathan, QLD 4111, Australia; (Z.Z.); (I.B.); (C.K.)
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31
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Hu F, Cheng J, Dong J, Zhong J, Zhou Z, Hu K. Fine mapping and candidate gene analysis of the up locus determining fruit orientation in pepper (Capsicum spp.). Theor Appl Genet 2021; 134:2901-2911. [PMID: 34076730 DOI: 10.1007/s00122-021-03867-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2021] [Accepted: 05/20/2021] [Indexed: 06/12/2023]
Abstract
The up locus determining fruit orientation was fine-mapped into a region with a physical length of ~169.51 kb on chromosome P12 in pepper. Capana12g000958, encoding a developmentally regulated G protein 2, was proposed as the strongest candidate via sequence comparison and expression analysis. Fruit orientation is an important horticultural and domesticated trait, which is controlled by a single semi-dominant gene (up) in pepper. However, the gene underlying up locus has not yet been identified. In this study, the previously detected major QTL UP12.1 was firstly verified using a backcross population (n = 225) stem from the cross of BB3 (C. annuum) and its wild relative Chiltepin (C. annuum var. glabriusculum) using BB3 as the recurrent parent. Then, a large BC1F2 population (n = 1827) was used for recombinant screening to delimit the up locus into an interval with ~ 169.51 kb in length. Sequence comparison and expression analysis suggested that Capana12g000958, encoding a developmentally regulated G protein 2, was the most likely candidate gene for the up locus. There is no difference within the coding sequences of Capana12g000958 between BB3 and Chiltepin, while a SNP in the upstream of Capana12g000958 showed a complete correlation with the fruit orientation among a panel of 40 diverse pepper inbred lines. These findings will form a basis for gene isolation and reveal of genetic mechanism underlying the fruit orientation domestication in pepper.
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Affiliation(s)
- Fang Hu
- College of Horticulture, South China Agricultural University/Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (South China), Ministry of Agriculture and Rural Affairs/Guangdong Vegetables Engineering Research Center, Guangzhou, 510642, China
| | - Jiaowen Cheng
- College of Horticulture, South China Agricultural University/Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (South China), Ministry of Agriculture and Rural Affairs/Guangdong Vegetables Engineering Research Center, Guangzhou, 510642, China
| | - Jichi Dong
- College of Horticulture, South China Agricultural University/Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (South China), Ministry of Agriculture and Rural Affairs/Guangdong Vegetables Engineering Research Center, Guangzhou, 510642, China
| | - Jian Zhong
- College of Horticulture, South China Agricultural University/Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (South China), Ministry of Agriculture and Rural Affairs/Guangdong Vegetables Engineering Research Center, Guangzhou, 510642, China
| | - Ziyan Zhou
- College of Horticulture, South China Agricultural University/Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (South China), Ministry of Agriculture and Rural Affairs/Guangdong Vegetables Engineering Research Center, Guangzhou, 510642, China
| | - Kailin Hu
- College of Horticulture, South China Agricultural University/Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (South China), Ministry of Agriculture and Rural Affairs/Guangdong Vegetables Engineering Research Center, Guangzhou, 510642, China.
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32
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Wang F, Wu Y, Wu W, Huang Y, Zhu C, Zhang R, Chen J, Zeng J. Integrative analysis of metabolome and transcriptome profiles provides insight into the fruit pericarp pigmentation disorder caused by 'Candidatus Liberibacter asiaticus' infection. BMC Plant Biol 2021; 21:397. [PMID: 34433413 PMCID: PMC8385863 DOI: 10.1186/s12870-021-03167-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/14/2020] [Accepted: 08/10/2021] [Indexed: 06/13/2023]
Abstract
BACKGROUND Mandarin 'Shatangju' is susceptible to Huanglongbing (HLB) and the HLB-infected fruits are small, off-flavor, and stay-green at the maturity period. To understand the relationship between pericarp color and HLB pathogen and the effect mechanism of HLB on fruit pericarp coloration, quantitative analyses of HLB bacterial pathogens and carotenoids and also the integrative analysis of metabolome and transcriptome profiles were performed in the mandarin 'Shatangju' variety with four different color fruits, whole green fruits (WGF), top-yellow and base-green fruits (TYBGF), whole light-yellow fruits (WLYF), and whole dark-yellow fruits (WDYF) that were infected with HLB. RESULTS the HLB bacterial population followed the order WGF > TYBGF > WLYF > WDYF. And there were significant differences between each group of samples. Regarding the accumulation of chlorophyll and carotenoid, the chlorophyll-a content in WGF was the highest and in WDYF was the lowest. The content of chlorophyll-b in WGF was significantly higher than that in other three pericarps. There were significant differences in the total content of carotenoid between each group. WGF and TYBGF pericarps were low in phytoene, γ-carotene, β-cryptoxanthin and apocarotenal, while other kinds of carotenoids were significantly higher than those in WDYF. And WLYF was only short of apocarotenal. We comprehensively compared the transcriptome and metabolite profiles of abnormal (WGF, TYBGF and WLYF) and normal (WDYF, control) pericarps. In total, 2,880, 2,782 and 1,053 differentially expressed genes (DEGs), including 121, 117 and 43 transcription factors were identified in the three comparisons, respectively. The qRT-PCR confirmed the expression levels of genes selected from transcriptome. Additionally, a total of 77 flavonoids and other phenylpropanoid-derived metabolites were identified in the three comparisons. Most (76.65 %) showed markedly lower abundances in the three comparisons. The phenylpropanoid biosynthesis pathway was the major enrichment pathway in the integrative analysis of metabolome and transcriptome profiles. CONCLUSIONS Synthesizing the above analytical results, this study indicated that different color pericarps were associated with the reduced levels of some carotenoids and phenylpropanoids derivatives products and the down-regulation of proteins in flavonoids, phenylpropanoids derivatives biosynthesis pathway and the photosynthesis-antenna proteins.
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Affiliation(s)
- Feiyan Wang
- Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization & Guangdong Province Key Laboratory of Tropical and Subtropical Fruit Tree Research, Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, 510640 Guangzhou, China
- College of Horticulture, South China Agricultural University, 510642 Guangzhou, China
| | - Yunli Wu
- College of Horticulture, South China Agricultural University, 510642 Guangzhou, China
| | - Wen Wu
- Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization & Guangdong Province Key Laboratory of Tropical and Subtropical Fruit Tree Research, Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, 510640 Guangzhou, China
| | - Yongjing Huang
- Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization & Guangdong Province Key Laboratory of Tropical and Subtropical Fruit Tree Research, Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, 510640 Guangzhou, China
| | - Congyi Zhu
- Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization & Guangdong Province Key Laboratory of Tropical and Subtropical Fruit Tree Research, Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, 510640 Guangzhou, China
| | - Ruimin Zhang
- Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization & Guangdong Province Key Laboratory of Tropical and Subtropical Fruit Tree Research, Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, 510640 Guangzhou, China
| | - Jiezhong Chen
- College of Horticulture, South China Agricultural University, 510642 Guangzhou, China
| | - Jiwu Zeng
- Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization & Guangdong Province Key Laboratory of Tropical and Subtropical Fruit Tree Research, Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, 510640 Guangzhou, China
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Sun S, Lin M, Qi X, Chen J, Gu H, Zhong Y, Sun L, Muhammad A, Bai D, Hu C, Fang J. Full-length transcriptome profiling reveals insight into the cold response of two kiwifruit genotypes (A. arguta) with contrasting freezing tolerances. BMC Plant Biol 2021; 21:365. [PMID: 34380415 PMCID: PMC8356467 DOI: 10.1186/s12870-021-03152-w] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2021] [Accepted: 08/02/2021] [Indexed: 05/16/2023]
Abstract
BACKGROUND Kiwifruit (Actinidia Lindl.) is considered an important fruit species worldwide. Due to its temperate origin, this species is highly vulnerable to freezing injury while under low-temperature stress. To obtain further knowledge of the mechanism underlying freezing tolerance, we carried out a hybrid transcriptome analysis of two A. arguta (Actinidi arguta) genotypes, KL and RB, whose freezing tolerance is high and low, respectively. Both genotypes were subjected to - 25 °C for 0 h, 1 h, and 4 h. RESULTS SMRT (single-molecule real-time) RNA-seq data were assembled using the de novo method, producing 24,306 unigenes with an N50 value of 1834 bp. Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis of DEGs showed that they were involved in the 'starch and sucrose metabolism', the 'mitogen-activated protein kinase (MAPK) signaling pathway', the 'phosphatidylinositol signaling system', the 'inositol phosphate metabolism', and the 'plant hormone signal transduction'. In particular, for 'starch and sucrose metabolism', we identified 3 key genes involved in cellulose degradation, trehalose synthesis, and starch degradation processes. Moreover, the activities of beta-GC (beta-glucosidase), TPS (trehalose-6-phosphate synthase), and BAM (beta-amylase), encoded by the abovementioned 3 key genes, were enhanced by cold stress. Three transcription factors (TFs) belonging to the AP2/ERF, bHLH (basic helix-loop-helix), and MYB families were involved in the low-temperature response. Furthermore, weighted gene coexpression network analysis (WGCNA) indicated that beta-GC, TPS5, and BAM3.1 were the key genes involved in the cold response and were highly coexpressed together with the CBF3, MYC2, and MYB44 genes. CONCLUSIONS Cold stress led various changes in kiwifruit, the 'phosphatidylinositol signaling system', 'inositol phosphate metabolism', 'MAPK signaling pathway', 'plant hormone signal transduction', and 'starch and sucrose metabolism' processes were significantly affected by low temperature. Moreover, starch and sucrose metabolism may be the key pathway for tolerant kiwifruit to resist low temperature damages. These results increase our understanding of the complex mechanisms involved in the freezing tolerance of kiwifruit under cold stress and reveal a series of candidate genes for use in breeding new cultivars with enhanced freezing tolerance.
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Affiliation(s)
- Shihang Sun
- Key Laboratory for Fruit Tree Growth, Development and Quality Control, Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou, 450009, China
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), College of Horticulture and Forestry Science, Huazhong Agricultural University, Wuhan, 430070, China
| | - Miaomiao Lin
- Key Laboratory for Fruit Tree Growth, Development and Quality Control, Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou, 450009, China
| | - Xiujuan Qi
- Key Laboratory for Fruit Tree Growth, Development and Quality Control, Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou, 450009, China
| | - Jinyong Chen
- Key Laboratory for Fruit Tree Growth, Development and Quality Control, Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou, 450009, China
| | - Hong Gu
- Key Laboratory for Fruit Tree Growth, Development and Quality Control, Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou, 450009, China
| | - Yunpeng Zhong
- Key Laboratory for Fruit Tree Growth, Development and Quality Control, Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou, 450009, China
| | - Leiming Sun
- Key Laboratory for Fruit Tree Growth, Development and Quality Control, Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou, 450009, China
| | - Abid Muhammad
- Key Laboratory for Fruit Tree Growth, Development and Quality Control, Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou, 450009, China
| | - Danfeng Bai
- Key Laboratory for Fruit Tree Growth, Development and Quality Control, Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou, 450009, China
| | - Chungen Hu
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), College of Horticulture and Forestry Science, Huazhong Agricultural University, Wuhan, 430070, China.
| | - Jinbao Fang
- Key Laboratory for Fruit Tree Growth, Development and Quality Control, Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou, 450009, China.
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Jin M, Gan S, Jiao J, He Y, Liu H, Yin X, Zhu Q, Rao J. Genome-wide analysis of the bZIP gene family and the role of AchnABF1 from postharvest kiwifruit (Actinidia chinensis cv. Hongyang) in osmotic and freezing stress adaptations. Plant Sci 2021; 308:110927. [PMID: 34034875 DOI: 10.1016/j.plantsci.2021.110927] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2020] [Revised: 04/17/2021] [Accepted: 04/25/2021] [Indexed: 05/21/2023]
Abstract
Chilling injury (CI) is a barrier to the refrigeration of kiwifruit, resulting in decreased fruit quality and increased nutrient loss during storage. Understanding the molecular basis underlying the cold response and its regulation in refrigerated kiwifruit is therefore highly important. Basic (region) leucine zipper (bZIP) transcription factors (TFs) have been widely studied for their roles in abiotic stress resistance in various species. In this study, we identified 81 bZIP family proteins in kiwifruit and classified them into 11 groups. Further transcriptome analysis revealed that the expression of members of the AREB/ABF family was strongly induced by low temperature and abscisic acid (ABA). Ectopic expression of AchnABF1 enhanced plant cold tolerance by upregulating the expression of several key genes associated with ABA-dependent and ABA-independent pathways in Arabidopsis thaliana. Reactive oxygen species (ROS) metabolism was suggested to be involved in the AchnABF1-mediated osmotic stress response. For instance, enhanced ROS-scavenging ability was observed in transgenic plants with enhanced activity of catalase (CAT) and peroxidase (POD), which resulted in decreased in situ O2.- and H2O2 accumulation, ion leakage, and malondialdehyde (MDA) content under various abiotic stresses. In addition, AchnABF1 also participated in the osmotic stress response during both the germination and postgermination stages. We concluded that AchnABF1 may play an important role in kiwifruit during refrigeration.
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Affiliation(s)
- Mijing Jin
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Sufu Gan
- Biotechnology of Horticultural Crops, TUM School for Life Sciences Weihenstephan, Technische Universität München, Freising, D-85354, Germany
| | - Jianqing Jiao
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Yiheng He
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Hui Liu
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Xueren Yin
- Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Zijingang Campus, Hangzhou, China
| | - Qinggang Zhu
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, China.
| | - Jingping Rao
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, China.
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Zhang Z, Liu J, Huber DJ, Qu H, Yun Z, Li T, Jiang Y. Transcriptome, degradome and physiological analysis provide new insights into the mechanism of inhibition of litchi fruit senescence by melatonin. Plant Sci 2021; 308:110926. [PMID: 34034874 DOI: 10.1016/j.plantsci.2021.110926] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2021] [Revised: 04/19/2021] [Accepted: 04/25/2021] [Indexed: 05/25/2023]
Abstract
Litchi fruit has high commercial value on the international market, but senesces rapidly after harvest. We used weighted gene co-expression network analysis (WGCNA) and degradome technology to investigate the molecular mechanisms of melatonin-mediated delay of litchi fruit senescence through application of exogenous melatonin and p-chlorophenylalanine (p-CPA, an inhibitor of melatonin biosynthesis) treatments. Results demonstrated that exogenous melatonin treatment delayed litchi fruit senescence while p-CPA accelerated senescence. Coupled analyses of transcriptome and physiological parameters of litchi fruit provided the correlation of network modules with dynamic changes in browning index during storage. Additionally, we found that microRNAs (miR858 and miR160a) and their targets were actively involved in melatonin-mediated delay of litchi fruit senescence. Melatonin treatment decreased abscisic acid (ABA) content but increased PP2C and F-box expression levels, suggesting the involvement of ABA signaling in melatonin-mediated antisenescence. The transcriptions of ZAT, NAC and DREB1 were activated by melatonin treatment. Moreover, the major functional genes involved in histone methylation, γ-aminobutyric acid (GABA) metabolism, energy production, reactive oxygen species (ROS) accumulation and cell death were identified in the melatonin-inhibited litchi pericarp browning. Taken together, we first constructed the global map of the important regulators and pathways to delay litchi senescence and pericarp browning mediated by melatonin.
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Affiliation(s)
- Zhengke Zhang
- College of Food Science and Engineering, Hainan University, Haikou, 570228, China
| | - Jialiang Liu
- College of Food Science and Engineering, Hainan University, Haikou, 570228, China
| | - Donald J Huber
- Horticultural Sciences Department, PO Box 110690, IFAS, University of Florida, Gainesville, FL, 32611-0690, USA
| | - Hongxia Qu
- Key Laboratory of Plant Resource Conservation and Sustainable Utilization, Key Laboratory of Post-Harvest Handling of Fruits, Ministry of Agriculture, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China; Center of Economic Botany, Core Botanical Gardens, Chinese Academy of Sciences, Guangzhou, 510650, China
| | - Ze Yun
- Key Laboratory of Plant Resource Conservation and Sustainable Utilization, Key Laboratory of Post-Harvest Handling of Fruits, Ministry of Agriculture, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
| | - Taotao Li
- Key Laboratory of Plant Resource Conservation and Sustainable Utilization, Key Laboratory of Post-Harvest Handling of Fruits, Ministry of Agriculture, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China; Center of Economic Botany, Core Botanical Gardens, Chinese Academy of Sciences, Guangzhou, 510650, China.
| | - Yueming Jiang
- Key Laboratory of Plant Resource Conservation and Sustainable Utilization, Key Laboratory of Post-Harvest Handling of Fruits, Ministry of Agriculture, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China; Center of Economic Botany, Core Botanical Gardens, Chinese Academy of Sciences, Guangzhou, 510650, China
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36
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Almeida J, Perez-Fons L, Fraser PD. A transcriptomic, metabolomic and cellular approach to the physiological adaptation of tomato fruit to high temperature. Plant Cell Environ 2021; 44:2211-2229. [PMID: 32691430 DOI: 10.1111/pce.13854] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2020] [Revised: 07/02/2020] [Accepted: 07/12/2020] [Indexed: 05/21/2023]
Abstract
High temperatures can negatively influence plant growth and development. Besides yield, the effects of heat stress on fruit quality traits remain poorly characterised. In tomato, insights into how fruits regulate cellular metabolism in response to heat stress could contribute to the development of heat-tolerant varieties, without detrimental effects on quality. In the present study, the changes occurring in wild type tomato fruits after exposure to transient heat stress have been elucidated at the transcriptome, cellular and metabolite level. An impact on fruit quality was evident as nutritional attributes changed in response to heat stress. Fruit carotenogenesis was affected, predominantly at the stage of phytoene formation, although altered desaturation/isomerisation arose during the transient exposure to high temperatures. Plastidial isoprenoid compounds showed subtle alterations in their distribution within chromoplast sub-compartments. Metabolite profiling suggests limited effects on primary/intermediary metabolism but lipid remodelling was evident. The heat-induced molecular signatures included the accumulation of sucrose and triacylglycerols, and a decrease in the degree of membrane lipid unsaturation, which influenced the volatile profile. Collectively, these data provide valuable insights into the underlying biochemical and molecular adaptation of fruit to heat stress and will impact on our ability to develop future climate resilient tomato varieties.
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Affiliation(s)
- Juliana Almeida
- Department of Biological Sciences, Royal Holloway University of London, Egham, UK
| | - Laura Perez-Fons
- Department of Biological Sciences, Royal Holloway University of London, Egham, UK
| | - Paul D Fraser
- Department of Biological Sciences, Royal Holloway University of London, Egham, UK
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Zheng T, Guan L, Yu K, Haider MS, Nasim M, Liu Z, Li T, Zhang K, Jiu S, Jia H, Fang J. Expressional diversity of grapevine 3-Hydroxy-3-methylglutaryl-CoA reductase (VvHMGR) in different grapes genotypes. BMC Plant Biol 2021; 21:279. [PMID: 34147088 PMCID: PMC8214791 DOI: 10.1186/s12870-021-03073-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2021] [Accepted: 05/26/2021] [Indexed: 05/16/2023]
Abstract
BACKGROUND 3-Hydroxy-3-methylglutaryl-CoA reductase (HMGR) is a key enzyme in the mevalonate (MVA) pathway, which regulates the metabolism of terpenoids in the cytoplasm and determines the type and content of downstream terpenoid metabolites. RESULTS Results showed that grapevine HMGR family has three members, such as VvHMGR1, VvHMGR2, and VvHMGR3. The expression of VvHMGRs in 'Kyoho' has tissue specificity, for example, VvHMGR1 keeps a higher expression, VvHMGR2 is the lowest, and VvHMGR3 gradually decreases as the fruit development. VvHMGR3 is closely related to CsHMGR1 and GmHMGR9 and has collinearity with CsHMGR2 and GmHMGR4. By the prediction of interaction protein, it can interact with HMG-CoA synthase, MVA kinase, FPP/GGPP synthase, diphosphate mevalonate decarboxylase, and participates in the synthesis and metabolism of terpenoids. VvHMGR3 have similar trends in expression with some of the genes of carotenoid biosynthesis and MEP pathways. VvHMGR3 responds to various environmental and phytohormone stimuli, especially salt stress and ultraviolet (UV) treatment. The expression level of VvHMGRs is diverse in grapes of different colors and aroma. VvHMGRs are significantly higher in yellow varieties than that in red varieties, whereas rose-scented varieties showed significantly higher expression than that of strawberry aroma. The expression level is highest in yellow rose-scented varieties, and the lowest in red strawberry scent varieties, especially 'Summer Black' and 'Fujiminori'. CONCLUSION This study confirms the important role of VvHMGR3 in the process of grape fruit coloring and aroma formation, and provided a new idea to explain the loss of grape aroma and poor coloring during production. There may be an additive effect between color and aroma in the HMGR expression aspect.
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Affiliation(s)
- Ting Zheng
- College of Horticulture, Nanjing Agricultural University, Jiangsu Province, Nanjing City, 210095, PR China
| | - Lubin Guan
- College of Horticulture, Nanjing Agricultural University, Jiangsu Province, Nanjing City, 210095, PR China
| | - Kun Yu
- College of Agriculture, Shihezi University, Shihezi City, 832003, PR China
| | - Muhammad Salman Haider
- College of Horticulture, Nanjing Agricultural University, Jiangsu Province, Nanjing City, 210095, PR China
| | - Maazullah Nasim
- College of Horticulture, Nanjing Agricultural University, Jiangsu Province, Nanjing City, 210095, PR China
| | - Zhongjie Liu
- College of Horticulture, Nanjing Agricultural University, Jiangsu Province, Nanjing City, 210095, PR China
| | - Teng Li
- College of Horticulture, Nanjing Agricultural University, Jiangsu Province, Nanjing City, 210095, PR China
| | - Kekun Zhang
- College of Enology, Northwest A&F University, Yangling, 712100, PR China
| | - Songtao Jiu
- Department of Plant Science, Shanghai Jiao Tong University, 200030, Shanghai, PR China
| | - Haifeng Jia
- College of Horticulture, Nanjing Agricultural University, Jiangsu Province, Nanjing City, 210095, PR China.
| | - Jinggui Fang
- College of Horticulture, Nanjing Agricultural University, Jiangsu Province, Nanjing City, 210095, PR China.
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Minorsky PV. On the Inside. Plant Physiol 2021; 186:193-195. [PMID: 35237801 PMCID: PMC8154083 DOI: 10.1093/plphys/kiab104] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2021] [Accepted: 02/23/2021] [Indexed: 06/14/2023]
Affiliation(s)
- Peter V Minorsky
- School of Health and Natural Sciences, Mercy College, Dobbs Ferry, New York, USA
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Forlani S, Mizzotti C, Masiero S. The NAC side of the fruit: tuning of fruit development and maturation. BMC Plant Biol 2021; 21:238. [PMID: 34044765 PMCID: PMC8157701 DOI: 10.1186/s12870-021-03029-y] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2020] [Accepted: 05/10/2021] [Indexed: 05/16/2023]
Abstract
Fruits and seeds resulting from fertilization of flowers, represent an incredible evolutionary advantage in angiosperms and have seen them become a critical element in our food supply.Many studies have been conducted to reveal how fruit matures while protecting growing seeds and ensuring their dispersal. As result, several transcription factors involved in fruit maturation and senescence have been isolated both in model and crop plants. These regulators modulate several cellular processes that occur during fruit ripening such as chlorophyll breakdown, tissue softening, carbohydrates and pigments accumulation.The NAC superfamily of transcription factors is known to be involved in almost all these aspects of fruit development and maturation. In this review, we summarise the current knowledge regarding NACs that modulate fruit ripening in model species (Arabidopsis thaliana and Solanum lycopersicum) and in crops of commercial interest (Oryza sativa, Malus domestica, Fragaria genus, Citrus sinensis and Musa acuminata).
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Affiliation(s)
- Sara Forlani
- Department of Biosciences, Università Degli Studi Di Milano, Via Celoria 26, 20133, Milan, Italy
| | - Chiara Mizzotti
- Department of Biosciences, Università Degli Studi Di Milano, Via Celoria 26, 20133, Milan, Italy
| | - Simona Masiero
- Department of Biosciences, Università Degli Studi Di Milano, Via Celoria 26, 20133, Milan, Italy.
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Abstract
Neck shrivel is a quality disorder of European plum (Prunus × domestica L.). It has been suggested that backflow in the xylem (from fruit to tree) could contribute to the incidence of neck shrivel in plum. The objective was to quantify rates of xylem, phloem and of transpiration flow in developing plum fruit. Using linear variable displacement transducers, changes in fruit volume were recorded 1) in un-treated control fruit, 2) in fruit that had their pedicels steam-girdled (phloem interrupted, xylem still functional) and 3) in detached fruit, left in the canopy (xylem and phloem interrupted). Xylem flow rates were occasionally negative in the early hours after sunrise, indicating xylem sap backflow from fruit to tree. Later in the day, xylem flows were positive and generally higher in daytime and lower at night. Significant phloem flow occurred in daytime, but ceased after sunset. During stage II (but not during stage III), the rates of xylem flow and transpiration were variable and closely related to atmospheric vapor pressure deficit. The relative contribution of xylem inflow to total sap inflow averaged 79% during stage II, decreasing to 25% during stage III. In contrast, phloem sap inflow averaged 21% of total sap inflow during stage II, increasing to 75% in stage III. Our results indicate that xylem backflow occurs early in the day. However, xylem backflow rates are considered too low to significantly contribute to the incidence of neck shrivel.
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Affiliation(s)
- Andreas Winkler
- Institute for Horticultural Production Systems, Leibniz-University Hannover, Hannover, Germany
| | - Moritz Knoche
- Institute for Horticultural Production Systems, Leibniz-University Hannover, Hannover, Germany
- * E-mail:
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Kaur H, Ozga JA, Reinecke DM. Balancing of hormonal biosynthesis and catabolism pathways, a strategy to ameliorate the negative effects of heat stress on reproductive growth. Plant Cell Environ 2021; 44:1486-1503. [PMID: 32515497 DOI: 10.1111/pce.13820] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2019] [Accepted: 05/29/2020] [Indexed: 05/08/2023]
Abstract
In pea (Pisum sativum L.), moderate heat stress during early flowering/fruit set increased seed/ovule abortion, and concomitantly produced fruits with reduced ovary (pericarp) length, and fewer seeds at maturity. Plant hormonal networks coordinate seed and pericarp growth and development. To determine if these hormonal networks are modulated in response to heat stress, we analyzed the gene expression patterns and associated these patterns with precursors, and bioactive and inactive metabolites of the auxin, gibberellin (GA), abscisic acid (ABA), and ethylene biosynthesis/catabolism pathways in young developing seeds and pericarps of non-stressed and 4-day heat-stressed fruits. Our data suggest that within the developing seeds heat stress decreased bioactive GA levels reducing GA growth-related processes, and that increased ethylene levels may have promoted this inhibitory response. In contrast, heat stress increased auxin biosynthesis gene expression and auxin levels in the seeds and pericarps, and seed ABA levels, both effects can increase seed sink strength. We hypothesize that seeds with higher auxin- and ABA-induced sink strength and adequate bioactive GA levels will set and continue to grow, while the seeds with lower sink strength (low auxin, ABA, and GA levels) will become more sensitive to heat stress-induced ethylene leading to ovule/seed abortion.
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Affiliation(s)
- Harleen Kaur
- Plant BioSystems, Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, Alberta, Canada
| | - Jocelyn A Ozga
- Plant BioSystems, Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, Alberta, Canada
| | - Dennis M Reinecke
- Plant BioSystems, Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, Alberta, Canada
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Lu S, Ye J, Zhu K, Zhang Y, Zhang M, Xu Q, Deng X. A fruit ripening-associated transcription factor CsMADS5 positively regulates carotenoid biosynthesis in citrus. J Exp Bot 2021; 72:3028-3043. [PMID: 33543257 DOI: 10.1093/jxb/erab045] [Citation(s) in RCA: 29] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/09/2020] [Accepted: 02/01/2021] [Indexed: 05/21/2023]
Abstract
Carotenoids in citrus contribute to the quality of the fruit, but the mechanism of its transcriptional regulation is fairly unknown. Here, we characterized a citrus FRUITFULL sub-clade MADS gene, CsMADS5, that was ripening-inducible and acted as a nucleus-localized trans-activator. Transient overexpression of CsMADS5 in citrus induced fruit coloration and enhanced carotenoid concentrations. The expression of carotenogenic genes including phytoene synthase (PSY), phytoene desaturase (PDS), and lycopene β-cyclase 1 (LCYb1) was increased in the peels of fruits overexpressing CsMADS5. Similar results were observed from stable overexpression of CsMADS5 in tomato fruits and citrus calli, even though the effect of CsMADS5 on carotenoid metabolism in transgenic citrus calli was limited. Further biochemical analyses demonstrated that CsMADS5 activated the transcription of PSY, PDS, and LCYb1 by directly binding to their promoters. We concluded that CsMADS5 positively regulates carotenoid biosynthesis in fruits by directly activating the transcription of carotenogenic genes. Moreover, CsMADS5 physically interacted with a positive regulator CsMADS6, indicating that CsMADS5 may form an enhancer complex with CsMADS6 to synergistically promote carotenoid accumulation. These findings expand our understanding of the complex transcriptional regulatory hierarchy of carotenoid biosynthesis during fruit ripening.
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Affiliation(s)
- Suwen Lu
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University, Wuhan, China
- University of Trento, Italy
| | - Junli Ye
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University, Wuhan, China
| | - Kaijie Zhu
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University, Wuhan, China
| | - Yin Zhang
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University, Wuhan, China
| | | | - Qiang Xu
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University, Wuhan, China
| | - Xiuxin Deng
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University, Wuhan, China
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Song Y, Hanner RH, Meng B. Probing into the Effects of Grapevine Leafroll-Associated Viruses on the Physiology, Fruit Quality and Gene Expression of Grapes. Viruses 2021; 13:v13040593. [PMID: 33807294 PMCID: PMC8066071 DOI: 10.3390/v13040593] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2021] [Revised: 03/23/2021] [Accepted: 03/26/2021] [Indexed: 12/19/2022] Open
Abstract
Grapevine leafroll is one of the most widespread and highly destructive grapevine diseases that is responsible for great economic losses to the grape and wine industries throughout the world. Six distinct viruses have been implicated in this disease complex. They belong to three genera, all in the family Closteroviridae. For the sake of convenience, these viruses are named as grapevine leafroll-associated viruses (GLRaV-1, -2, -3, -4, -7, and -13). However, their etiological role in the disease has yet to be established. Furthermore, how infections with each GLRaV induce the characteristic disease symptoms remains unresolved. Here, we first provide a brief overview on each of these GLRaVs with a focus on genome structure, expression strategies and gene functions, where available. We then provide a review on the effects of GLRaV infection on the physiology, fruit quality, fruit chemical composition, and gene expression of grapevine based on the limited information so far reported in the literature. We outline key methodologies that have been used to study how GLRaV infections alter gene expression in the grapevine host at the transcriptomic level. Finally, we present a working model as an initial attempt to explain how infections with GLRaVs lead to the characteristic symptoms of grapevine leafroll disease: leaf discoloration and downward rolling. It is our hope that this review will serve as a starting point for grapevine virology and the related research community to tackle this vastly important and yet virtually uncharted territory in virus-host interactions involving woody and perennial fruit crops.
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Affiliation(s)
- Yashu Song
- Department of Molecular and Cellular Biology, University of Guelph, Guelph, ON N1G 2W1, Canada;
| | - Robert H. Hanner
- Department of Integrative Biology and Biodiversity Institute of Ontario, University of Guelph, Guelph, ON N1G 2W1, Canada;
| | - Baozhong Meng
- Department of Molecular and Cellular Biology, University of Guelph, Guelph, ON N1G 2W1, Canada;
- Correspondence: ; Tel.: +1-519-824-4120 (ext. 53876)
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Liang B, Sun Y, Wang J, Zheng Y, Zhang W, Xu Y, Li Q, Leng P. Tomato protein phosphatase 2C influences the onset of fruit ripening and fruit glossiness. J Exp Bot 2021; 72:2403-2418. [PMID: 33345282 DOI: 10.1093/jxb/eraa593] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2020] [Accepted: 12/16/2020] [Indexed: 06/12/2023]
Abstract
Abscisic acid (ABA) plays a vital role in coordinating physiological processes during fresh fruit ripening. Binding of ABA to receptors facilitates the interaction and inhibition of type 2C phosphatase (PP2C) co-receptors. However, the exact mechanism of PP2C during fruit ripening is unclear. In this study, we determined the role of the tomato ABA co-receptor type 2C phosphatase SlPP2C3, a negative regulator of ABA signaling and fruit ripening. SlPP2C3 selectively interacted with monomeric ABA receptors and SlSnRK2.8 kinase in both yeast and tobacco epidermal cells. Expression of SlPP2C3 was ABA-inducible, which was negatively correlated with fruit ripening. Tomato plants with suppressed SlPP2C3 expression exhibited enhanced sensitivity to ABA, while plants overexpressing SlPP2C3 were less sensitive to ABA. Importantly, lack of SlPP2C3 expression accelerated the onset of fruit ripening and affected fruit glossiness by altering the outer epidermis structure. There was a significant difference in the expression of cuticle-related genes in the pericarp between wild-type and SlPP2C3-suppressed lines based on RNA sequencing (RNA-seq) analysis. Taken together, our findings demonstrate that SlPP2C3 plays an important role in the regulation of fruit ripening and fruit glossiness in tomato.
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Affiliation(s)
- Bin Liang
- College of Horticulture, China Agricultural University, Beijing, PR China
| | - Yufei Sun
- College of Horticulture, China Agricultural University, Beijing, PR China
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel
| | - Juan Wang
- College of Horticulture, China Agricultural University, Beijing, PR China
| | - Yu Zheng
- College of Horticulture, China Agricultural University, Beijing, PR China
| | - Wenbo Zhang
- College of Horticulture, China Agricultural University, Beijing, PR China
| | - Yandan Xu
- College of Horticulture, China Agricultural University, Beijing, PR China
| | - Qian Li
- College of Horticulture, China Agricultural University, Beijing, PR China
| | - Ping Leng
- College of Horticulture, China Agricultural University, Beijing, PR China
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Coluccio Leskow C, Conte M, Del Pozo T, Bermúdez L, Lira BS, Gramegna G, Baroli I, Burgos E, Zavallo D, Kamenetzky L, Asís R, Gonzalez M, Fernie AR, Rossi M, Osorio S, Carrari F. The cytosolic invertase NI6 affects vegetative growth, flowering, fruit set, and yield in tomato. J Exp Bot 2021; 72:2525-2543. [PMID: 33367755 DOI: 10.1093/jxb/eraa594] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2020] [Accepted: 12/21/2020] [Indexed: 06/12/2023]
Abstract
Sucrose metabolism is important for most plants, both as the main source of carbon and via signaling mechanisms that have been proposed for this molecule. A cleaving enzyme, invertase (INV) channels sucrose into sink metabolism. Although acid soluble and insoluble invertases have been largely investigated, studies on the role of neutral invertases (A/N-INV) have lagged behind. Here, we identified a tomato A/N-INV encoding gene (NI6) co-localizing with a previously reported quantitative trait locus (QTL) largely affecting primary carbon metabolism in tomato. Of the eight A/N-INV genes identified in the tomato genome, NI6 mRNA is present in all organs, but its expression was higher in sink tissues (mainly roots and fruits). A NI6-GFP fusion protein localized to the cytosol of mesophyll cells. Tomato NI6-silenced plants showed impaired growth phenotype, delayed flowering and a dramatic reduction in fruit set. Global gene expression and metabolite profile analyses of these plants revealed that NI6 is not only essential for sugar metabolism, but also plays a signaling role in stress adaptation. We also identified major hubs, whose expression patterns were greatly affected by NI6 silencing; these hubs were within the signaling cascade that coordinates carbohydrate metabolism with growth and development in tomato.
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Affiliation(s)
- Carla Coluccio Leskow
- Instituto de Biotecnología, Instituto Nacional de Tecnología Agropecuaria (IB-INTA), and Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), B1712WAA Hurlingham, Argentina
| | - Mariana Conte
- Instituto de Biotecnología, Instituto Nacional de Tecnología Agropecuaria (IB-INTA), and Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), B1712WAA Hurlingham, Argentina
| | - Talia Del Pozo
- Centro Tecnológico de Recursos Vegetales, Escuela de Agronomía, Universidad Mayor, Camino La Pirámide 5750, Huechuraba, Santiago, Chile
| | - Luisa Bermúdez
- Instituto de Biotecnología, Instituto Nacional de Tecnología Agropecuaria (IB-INTA), and Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), B1712WAA Hurlingham, Argentina
- Cátedra de Genética, Facultad de Agronomía, Universidad de Buenos Aires, Buenos Aires, Argentina
| | - Bruno Silvestre Lira
- Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, São Paulo, SP, Brazil
| | - Giovanna Gramegna
- Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, São Paulo, SP, Brazil
| | - Irene Baroli
- Instituto de Biodiversidad y Biología Experimental Aplicada., IBBEA, CONICET, Buenos Aires, Argentina
| | - Estanislao Burgos
- Instituto de Fisiología, Biología Molecular y Neurociencias (IFIBYNE-UBA-CONICET), Ciudad Universitaria, C1428EHA Buenos Aires, Argentina
| | - Diego Zavallo
- Instituto de Biotecnología, Instituto Nacional de Tecnología Agropecuaria (IB-INTA), and Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), B1712WAA Hurlingham, Argentina
| | - Laura Kamenetzky
- Laboratorio de Genómica y Bioinformática de Patógenos. iB3 | Instituto de Biociencias, Biotecnología y Biología traslacional. Departamento de Fisiologia y Biologia Molecular y Celular Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Argentina
| | - Ramón Asís
- Facultad de Ciencias Químicas, Universidad Nacional de Córdoba, Córdoba, Argentina
| | - Mauricio Gonzalez
- Centro Tecnológico de Recursos Vegetales, Escuela de Agronomía, Universidad Mayor, Camino La Pirámide 5750, Huechuraba, Santiago, Chile
| | - Alisdair Robert Fernie
- Max Planck Institute for Molecular Plant Physiology, Wissenschafts Park Golm, Am Mühlenberg 1, Potsdam-Golm, D-14 476, Germany
| | - Magdalena Rossi
- Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, São Paulo, SP, Brazil
| | - Sonia Osorio
- Instituto de Hortofruticultura Subtropical y Mediterránea "La Mayora," University of Malaga-Consejo Superior de Investigaciones Científicas, Department of Molecular Biology and Biochemistry, Campus de Teatinos, 29071 Malaga, Spain
| | - Fernando Carrari
- Cátedra de Genética, Facultad de Agronomía, Universidad de Buenos Aires, Buenos Aires, Argentina
- Instituto de Fisiología, Biología Molecular y Neurociencias (IFIBYNE-UBA-CONICET), Ciudad Universitaria, C1428EHA Buenos Aires, Argentina
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Piñero MC, Otálora G, Collado J, López-Marín J, Del Amor FM. Foliar application of putrescine before a short-term heat stress improves the quality of melon fruits (Cucumis melo L.). J Sci Food Agric 2021; 101:1428-1435. [PMID: 32833253 DOI: 10.1002/jsfa.10756] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2020] [Revised: 06/25/2020] [Accepted: 08/24/2020] [Indexed: 06/11/2023]
Abstract
BACKGROUND Climate change has caused an increase in the frequency and intensity of heatwaves, worldwide, which subject plants to thermal stress for short periods; this can affect the quality of melon fruits, both negatively and positively. Since the application of putrescine has been shown to help increase tolerance of abiotic stresses, the objective of this work is to determine the effects of the foliar application of putrescine (1.5 and 5 mmol L-1 ) before a short heat stress (HS) on the quality of melon fruits. RESULTS The results indicate that HS had a positive effect on the quality of melon fruits, since it increased the total sugars and polyamines contents and the antioxidant capacity, and reduced the presence of substances undesirable in foods such as nitrate. However, the fruit quality was further increased by the combination of HS and putrescine (5 mmol L-1 ). In this case, the melon fruits showed increases in their antioxidant capacity and contents of polyamines, amino acids and minerals beneficial to health. The nitrate concentration was even lower than in the control fruits. CONCLUSION This novel study highlights the possibility of improving the nutritional quality of melon pulp by applying foliar putrescine in combination with a short period of high temperature. © 2020 Society of Chemical Industry.
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Affiliation(s)
- María Carmen Piñero
- Department of Crop Production and Agri-Technology, Murcia Institute of Agri-Food Research and Development (IMIDA), C/Mayor, s/n, Murcia, 30150, Spain
| | - Ginés Otálora
- Department of Crop Production and Agri-Technology, Murcia Institute of Agri-Food Research and Development (IMIDA), C/Mayor, s/n, Murcia, 30150, Spain
| | - Jacinta Collado
- Department of Crop Production and Agri-Technology, Murcia Institute of Agri-Food Research and Development (IMIDA), C/Mayor, s/n, Murcia, 30150, Spain
| | - Josefa López-Marín
- Department of Crop Production and Agri-Technology, Murcia Institute of Agri-Food Research and Development (IMIDA), C/Mayor, s/n, Murcia, 30150, Spain
| | - Francisco M Del Amor
- Department of Crop Production and Agri-Technology, Murcia Institute of Agri-Food Research and Development (IMIDA), C/Mayor, s/n, Murcia, 30150, Spain
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Wang W, Liu D, Qin M, Xie Z, Chen R, Zhang Y. Effects of Supplemental Lighting on Potassium Transport and Fruit Coloring of Tomatoes Grown in Hydroponics. Int J Mol Sci 2021; 22:2687. [PMID: 33799970 PMCID: PMC7961429 DOI: 10.3390/ijms22052687] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2021] [Revised: 03/02/2021] [Accepted: 03/03/2021] [Indexed: 11/22/2022] Open
Abstract
Supplemental blue/red lighting accelerated fruit coloring and promoted lycopene synthesis in tomato fruits. Potassium (K) is the most enriched cation in tomato fruits, and its fertigation improved tomato yield and fruit color. However, the effects of supplemental lighting on K uptake and transport by tomatoes and whether supplemental lighting accelerates fruit coloring through enhancing K uptake and transport are still unclear. We investigated the effects of supplemental light-emitting diode (LED) lighting (SL; 100% red, 100% blue; 75% red combined 25% blue) on K uptake in roots and transport in the fruits as well as the fruit coloring of tomatoes (Micro-Tom) grown in an experimental greenhouse in hydroponics. The use of red SL or red combined blue SL enhanced K uptake and K accumulation as well as carotenoid (phytoene, lycopene, γ-carotene, and β-carotene) content in fruits by increasing photosynthesis, plant growth, and fruit weight. The genes related to ethylene signaling were upregulated by red SL. Quantitative real-time PCR (qRT-PCR) results showed that K transporter genes (SlHAKs) are differentially expressed during fruit development and ripening. The highest-expressed gene was SlHAK10 when fruit reached breaker and ripening. SlHAK3 and SlHAK19 were highly expressed at breaker, and SlHAK18 was highly expressed at ripening. These might be related to the formation of tomato fruit ripening and quality. SlHAK4, SlHAK6, SlHAK8, and SlHAK9 were significantly downregulated with fruit ripening and induced by low K. The expression level of SlHAK6, SlHAK10, SlHAK15, and SlHAK19 were significantly increased by blue SL or red combined blue SL during breaker and ripening. Blue SL or red combined blue SL increased content of phytoene, β-carotene, α-carotene, and γ-carotene and accelerated fruit coloring by enhancing K uptake in roots and transport in fruits during fruit ripening. This was consistent with the expression level of SlHAK6, SlHAK10, SlHAK15, and SlHAK19 during fruit development and ripening. The key genes of photoreceptors, light signaling transcript factors as well as abscisic acid (ABA) transduction induced by blue SL or red combined blue SL were consistent with the upregulated genes of SlHAK6, SlHAK10, SlHAK15, and SlHAK19 under blue SL and red combined blue SL. The K transport in tomato fruits might be mediated by light signaling and ABA signaling transduction. These results provide valuable information for fruit quality control and the light regulating mechanism of K transport and fruit coloring in tomatoes.
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Affiliation(s)
| | | | | | | | - Riyuan Chen
- College of Horticulture, South China Agricultural University, Guangzhou 510642, China; (W.W.); (D.L.); (M.Q.); (Z.X.)
| | - Yiting Zhang
- College of Horticulture, South China Agricultural University, Guangzhou 510642, China; (W.W.); (D.L.); (M.Q.); (Z.X.)
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48
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Qiao H, Zhang H, Wang Z, Shen Y. Fig fruit ripening is regulated by the interaction between ethylene and abscisic acid. J Integr Plant Biol 2021; 63:553-569. [PMID: 33421307 DOI: 10.1111/jipb.13065] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2020] [Accepted: 12/28/2020] [Indexed: 06/12/2023]
Abstract
Fleshy fruit ripening is typically regulated by ethylene in climacteric fruits and abscisic acid (ABA) in non-climacteric fruits. Common fig (Ficus carica) shows a dual-ripening mechanism, which is not fully understood. Here, we detected separate peaks of ethylene and ABA in fig fruits at the onset- and on-ripening stages, in conjunction with a sharp rise in glucose and fructose contents. In a newly-designed split-fruit system, exogenous ethylene failed to rescue fluridone-inhibited fruit ripening, whereas exogenous ABA rescued 2-amino-ethoxy-vinyl glycine (AVG)-inhibited fruit ripening. Transcriptome analysis revealed changes in the expression of genes key to both ABA and ethylene biosynthesis and perception during fig fruit ripening. At the de-greening stage, downregulation of FcACO2 or FcPYL8 retarded ripening, but downregulation of FcETR1/2 did not; unexpectedly, downregulation of FcAAO3 promoted ripening, but it inhibited ripening only before the de-greening stage. Furthermore, we detected an increase in ethylene emissions in the FcAAO3-RNAi ripening fruit and a decrease in ABA levels in the FcACO2-RNAi unripening fruit. Importantly, FcPYL8 can bind to ABA, suggesting that it functions as an ABA receptor. Our findings support the hypothesis that ethylene regulates the fig fruit ripening in an ABA-dependent manner. We propose a model for the role of the ABA-ethylene interaction in climacteric/non-climacteric processes.
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Affiliation(s)
- Han Qiao
- Beijing Key Laboratory for Agricultural Application and New Technique, College of Plant Science and Technology, Beijing University of Agriculture, Beijing, 102206, China
| | - Han Zhang
- Beijing Key Laboratory for Agricultural Application and New Technique, College of Plant Science and Technology, Beijing University of Agriculture, Beijing, 102206, China
| | - Zhun Wang
- Beijing Key Laboratory for Agricultural Application and New Technique, College of Plant Science and Technology, Beijing University of Agriculture, Beijing, 102206, China
| | - Yuanyue Shen
- Beijing Key Laboratory for Agricultural Application and New Technique, College of Plant Science and Technology, Beijing University of Agriculture, Beijing, 102206, China
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Cui Y, Zhai Y, Flaishman M, Li J, Chen S, Zheng C, Ma H. Ethephon induces coordinated ripening acceleration and divergent coloration responses in fig (Ficus carica L.) flowers and receptacles. Plant Mol Biol 2021; 105:347-364. [PMID: 33185823 DOI: 10.1007/s11103-020-01092-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2020] [Accepted: 11/04/2020] [Indexed: 05/15/2023]
Abstract
The regulatory landscape of ethephon-accelerated fig ripening is revealed; flowers and receptacles exhibit opposite responses in anthocyanin accumulation; PG, PL and EXP are suggested key genes in fig softening. Ethephon is used to accelerate fig-fruit ripening for improvement of harvesting efficiency, but the underlying molecular mechanism is still unclear. To elucidate the detailed biological mechanism of ethylene-accelerated fig ripening, fruit in phase II (the lag phase on the double sigmoid growth curve) were treated with ethephon, and reached commercial ripeness 6 days earlier than the nontreated controls. Transcriptomes of flowers and the surrounding receptacles-which together make up the pseudocarp in fig fruit-were analyzed. There were 5189, 5818 and 2563 differentially expressed genes (DEGs) 2, 4 and 6 days after treatment (DAT) in treated compared to control fruit, screened by p-adjust < 0.05 and |log2(fold change) |≥ 2. The DEGs were significantly enriched in plant hormone metabolism and signal transduction, cell-wall modification, sugar accumulation and anthocyanin accumulation pathways. DEGs in the first three pathway categories demonstrated an overall similar expression change in flowers and receptacles, whereas DEGs in anthocyanin pigmentation revealed divergent transcript abundance. Specifically, in both flowers and receptacles, ethephon significantly upregulated 1-aminocyclopropane-1-carboxylate oxidase and downregulated most of the ethylene-response factor genes; polygalacturonase, pectate lyase and expansin were mainly upregulated; two acid beta-fructofuranosidases were upregulated. However, structural genes in the anthocyanin-synthesis pathway were mainly downregulated in female flowers 2 and 4 DAT, whereas they were upregulated in the receptacles. Our study reveals the regulatory landscape of the two tissues of fig fruit in ethylene-induced ripening; the differentially expressed pathways and genes provide valuable resources for the mining of target genes for crucial biological and commercial trait improvement.
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Affiliation(s)
- Yuanyuan Cui
- Department of Fruit Tree Sciences, College of Horticulture, China Agricultural University, Beijing, 100193, China
| | - Yanlei Zhai
- Department of Fruit Tree Sciences, College of Horticulture, China Agricultural University, Beijing, 100193, China
| | - Moshe Flaishman
- Department of Fruit Tree Sciences, Agricultural Research Organization, The Volcani Center, Bet Dagan, Israel
| | - Jinping Li
- Fig Research Institute of Weiyuan County, Neijiang, 642450, Sichuan, China
| | - Shangwu Chen
- College of Food Science and Nutritional Engineering, China Agricultural University, Beijing, 100083, China
| | - Chuanlin Zheng
- Department of Fruit Tree Sciences, College of Horticulture, China Agricultural University, Beijing, 100193, China.
| | - Huiqin Ma
- Department of Fruit Tree Sciences, College of Horticulture, China Agricultural University, Beijing, 100193, China.
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50
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Huang J, Gut LJ. Impact of Background Fruit Odors on Attraction of Drosophila suzukii (Diptera: Drosophilidae) to Its Symbiotic Yeast. J Insect Sci 2021; 21:6166187. [PMID: 33693806 PMCID: PMC7947983 DOI: 10.1093/jisesa/ieab016] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2020] [Indexed: 05/25/2023]
Abstract
Background odors produced by plants in the environment can interfere with the response of insects to a point-releasing attractant, especially when their compositions overlap. In this study, a series of binary choice tests was conducted in a wind tunnel to investigate whether background odors emitted from cherry, blueberry, blackberry, or raspberry fruits would affect the level of Drosophila suzukii (Matsumura) attraction to its symbiotic yeast, Hanseniaspora uvarum (Niehaus) (Saccharomycetales: Saccharomycetaceae). Whether an increase in the intensity of background odors would affect the attractiveness of H. uvarum to D. suzukii was also investigated, either by increasing the number of cherry or raspberry fruit per cup or by increasing the number of fruit cups surrounding the cup baited with the yeast. In wind tunnel assays, background fruit odors interfering with D. suzukii attraction to the yeast varied among fruit types. Raspberry odor inhibited the attractiveness of H. uvarum to the fly the most, followed by blackberry odor, whereas cherry and blueberry odors had no significant impact on the attraction. An increase in the intensity of odors by adding more cherry or raspberry fruit per cup did not increase the impact of fruit odor on the attraction; however, adding more raspberry cups around H. uvarum linearly decreased its attractiveness, suggesting that background host fruit abundance and likely increase in host odor may influence D. suzukii attraction to yeast odor depending on host species.
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Affiliation(s)
- Juan Huang
- Department of Entomology, Michigan State University, East Lansing, MI, USA
| | - Larry J Gut
- Department of Entomology, Michigan State University, East Lansing, MI, USA
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