• Reference Citation Analysis
  • v
  • v
  • Find an Article
Find an Article PDF (4633588)   Today's Articles (4216)   Subscriber (49968)
For: Wang J, Zou Q, Lin C. A comparison of deep learning-based pre-processing and clustering approaches for single-cell RNA sequencing data. Brief Bioinform 2021;23:6361043. [PMID: 34472590 DOI: 10.1093/bib/bbab345] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2021] [Revised: 07/22/2021] [Accepted: 08/04/2021] [Indexed: 11/13/2022]  Open
Number Cited by Other Article(s)
1
Xu L, Li Z, Ren J, Liu S, Xu Y. Single-cell RNA sequencing data analysis utilizing multi-type graph neural networks. Comput Biol Med 2024;179:108921. [PMID: 39059210 DOI: 10.1016/j.compbiomed.2024.108921] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2024] [Revised: 07/08/2024] [Accepted: 07/16/2024] [Indexed: 07/28/2024]
2
Sun Y, Kong L, Huang J, Deng H, Bian X, Li X, Cui F, Dou L, Cao C, Zou Q, Zhang Z. A comprehensive survey of dimensionality reduction and clustering methods for single-cell and spatial transcriptomics data. Brief Funct Genomics 2024:elae023. [PMID: 38860675 DOI: 10.1093/bfgp/elae023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2023] [Revised: 02/29/2024] [Accepted: 05/27/2024] [Indexed: 06/12/2024]  Open
3
Wang H, Liu Z, Ma X. Learning Consistency and Specificity of Cells From Single-Cell Multi-Omic Data. IEEE J Biomed Health Inform 2024;28:3134-3145. [PMID: 38709615 DOI: 10.1109/jbhi.2024.3370868] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/08/2024]
4
Agerskov RH, Nyeng P. Innervation of the pancreas in development and disease. Development 2024;151:dev202254. [PMID: 38265192 DOI: 10.1242/dev.202254] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2024]
5
Fang Z, Zheng R, Li M. scMAE: a masked autoencoder for single-cell RNA-seq clustering. Bioinformatics 2024;40:btae020. [PMID: 38230824 PMCID: PMC10832357 DOI: 10.1093/bioinformatics/btae020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2023] [Revised: 01/07/2024] [Accepted: 01/12/2024] [Indexed: 01/18/2024]  Open
6
Zheng W, Min W, Wang S. TsImpute: an accurate two-step imputation method for single-cell RNA-seq data. Bioinformatics 2023;39:btad731. [PMID: 38039139 PMCID: PMC10724850 DOI: 10.1093/bioinformatics/btad731] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2023] [Revised: 11/22/2023] [Accepted: 11/30/2023] [Indexed: 12/03/2023]  Open
7
Liu T, Fang ZY, Li X, Zhang LN, Cao DS, Yin MZ. Graph deep learning enabled spatial domains identification for spatial transcriptomics. Brief Bioinform 2023;24:7130976. [PMID: 37080761 DOI: 10.1093/bib/bbad146] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2023] [Revised: 03/02/2023] [Accepted: 03/27/2023] [Indexed: 04/22/2023]  Open
8
Lu J, Sheng Y, Qian W, Pan M, Zhao X, Ge Q. scRNA-seq data analysis method to improve analysis performance. IET Nanobiotechnol 2023;17:246-256. [PMID: 36727937 DOI: 10.1049/nbt2.12115] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2022] [Revised: 12/28/2022] [Accepted: 12/30/2022] [Indexed: 02/03/2023]  Open
9
Zhang J, Liu X, Huang Z, Wu C, Zhang F, Han A, Stalin A, Lu S, Guo S, Huang J, Liu P, Shi R, Zhai Y, Chen M, Zhou W, Bai M, Wu J. T cell-related prognostic risk model and tumor immune environment modulation in lung adenocarcinoma based on single-cell and bulk RNA sequencing. Comput Biol Med 2023;152:106460. [PMID: 36565482 DOI: 10.1016/j.compbiomed.2022.106460] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2022] [Revised: 12/06/2022] [Accepted: 12/19/2022] [Indexed: 12/24/2022]
10
Rong Z, Liu Z, Song J, Cao L, Yu Y, Qiu M, Hou Y. MCluster-VAEs: An end-to-end variational deep learning-based clustering method for subtype discovery using multi-omics data. Comput Biol Med 2022;150:106085. [PMID: 36162197 DOI: 10.1016/j.compbiomed.2022.106085] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2022] [Revised: 07/30/2022] [Accepted: 09/03/2022] [Indexed: 11/03/2022]
11
Liu Q, Luo X, Li J, Wang G. scESI: evolutionary sparse imputation for single-cell transcriptomes from nearest neighbor cells. Brief Bioinform 2022;23:6580519. [PMID: 35512331 DOI: 10.1093/bib/bbac144] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2022] [Revised: 03/14/2022] [Accepted: 03/31/2022] [Indexed: 02/01/2023]  Open
12
Pan J, You ZH, Li LP, Huang WZ, Guo JX, Yu CQ, Wang LP, Zhao ZY. DWPPI: A Deep Learning Approach for Predicting Protein–Protein Interactions in Plants Based on Multi-Source Information With a Large-Scale Biological Network. Front Bioeng Biotechnol 2022;10:807522. [PMID: 35387292 PMCID: PMC8978800 DOI: 10.3389/fbioe.2022.807522] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2021] [Accepted: 02/25/2022] [Indexed: 12/30/2022]  Open
PrevPage 1 of 1 1Next
© 2004-2024 Baishideng Publishing Group Inc. All rights reserved. 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA